Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 114 of 311
Found at i:37884035 original size:52 final size:54
Alignment explanation
Indices: 37883871--37884072 Score: 200
Period size: 56 Copynumber: 3.8 Consensus size: 54
37883861 ATATTGAGTC
* * * * * *
37883871 CGCACA-TCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACAC-TAGTGCAACATAGTCAAAT
** * *
37883924 CGCACACTTAGTGCTACATAGTCAAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTC-AAACTCGCACAC-TAGTGCAACATAGTCAAAT
* **
37883980 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACA-TAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTAGTGCAACATAGTCAAAT
37884032 CGCACACTTAGTGCTACATAGTCAAA-TCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACAC-TAGTGC
37884073 TGTACAATTT
Statistics
Matches: 123, Mismatches: 18, Indels: 15
0.79 0.12 0.10
Matches are distributed among these distances:
52 42 0.34
53 8 0.07
54 27 0.22
55 1 0.01
56 45 0.37
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTAGTGCAACATAGTCAAAT
Found at i:37886885 original size:101 final size:99
Alignment explanation
Indices: 37886642--37886938 Score: 472
Period size: 97 Copynumber: 3.0 Consensus size: 99
37886632 AAGCGATACA
* *
37886642 GATACTTATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
**
37886707 GCCTCTATCCCAGACAGGGTCTTACACGAAATCA
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
* *
37886741 GATACTC--AAACAAGTACAATGCCAACGTCCCAGATGTGATCTTACATGTAATTCAATATTGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
* *
37886804 GCCTCCTGTCCCAGACAGGGTCTTTACACAAAATTT
66 GCCT-CTATCCCAGACAGGGTC-TTACACGAAATTT
*
37886840 GATACTCATAAACAAGTACAATGCCAACGTCCCAAACGTGGTCTTACATGTAATTCAATATTGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
*
37886905 GCCTCTATCCCAGATAGGGTCTTACACGAAATTT
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
37886939 CAGATCGAAG
Statistics
Matches: 180, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
97 57 0.32
98 16 0.09
99 35 0.19
100 15 0.08
101 57 0.32
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (99 bp):
GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
Found at i:37889812 original size:53 final size:54
Alignment explanation
Indices: 37889696--37889833 Score: 170
Period size: 53 Copynumber: 2.6 Consensus size: 54
37889686 AGTAAAGCAT
* * * *
37889696 GTAAGACCATGTCAAGACATGGCATTGATAACTACTATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGTAACTACTATAAGGCAAAGATACCAC
* * * * * *
37889750 GTAAGACCATGTTAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAACTACTATAAGGCAAAGATACCAC
*
37889803 GTAAGACCATGTCAAGACATGGAAATGGTAA
1 GTAAGACCATGTCAAGACATGGCAATGGTAA
37889834 TTTTAAAAAG
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
53 42 0.60
54 28 0.40
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAACTACTATAAGGCAAAGATACCAC
Found at i:37893113 original size:99 final size:99
Alignment explanation
Indices: 37892818--37893114 Score: 504
Period size: 99 Copynumber: 3.0 Consensus size: 99
37892808 AAGCGATACA
* *
37892818 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCCAATATCGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
**
37892883 GCCTCTATCCCAGACAGGGTCTTACACGAAATCA
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
* *
37892917 GATACTCATAAACAAGTACAATGCCAACGTCCCAGATGTGATCTTACATGTAATTCAATATTGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
* *
37892982 GCCTCTGTCCCAGACAGGGTCTTACACAAAATTT
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
*
37893016 GATACTCATAAACAAGTACAATGCCAACGTCCCAAACGTGGTCTTACATGTAATTCAATATTGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
*
37893081 GCCTCTATCCCAGATAGGGTCTTACACGAAATTT
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
37893115 CAGATCGAAG
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 184 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (99 bp):
GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
Found at i:37900460 original size:99 final size:99
Alignment explanation
Indices: 37900280--37900576 Score: 513
Period size: 99 Copynumber: 3.0 Consensus size: 99
37900270 GAAGCGATAC
*
37900280 AGATACTCATAAACAAGTACAATGCCAACGTCCCAAACGTGGTCTTACATGTAATTCAATATCGA
1 AGATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGA
*
37900345 TGCCTCTATCCTAGACAGGGTCTTACACGAAATT
66 TGCCTCTATCCCAGACAGGGTCTTACACGAAATT
* *
37900379 AGATACTCATAAACAAGTACAATGCCAACGTCCCAGATGTGATCTTACATGTAATTCAATATCGA
1 AGATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGA
* * *
37900444 TGCCTCTGTCCCAGACAGGGTCTTACATGAAATC
66 TGCCTCTATCCCAGACAGGGTCTTACACGAAATT
*
37900478 AGATACTCATAAACAAGTACAATGCCAACGTCCCAGACATGGTCTTACATGTAATTCAATATCGA
1 AGATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGA
*
37900543 TGCCTCTATCCCAGACAGGGTCTTACACAAAATT
66 TGCCTCTATCCCAGACAGGGTCTTACACGAAATT
37900577 TCAAATCGAA
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 184 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (99 bp):
AGATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGA
TGCCTCTATCCCAGACAGGGTCTTACACGAAATT
Found at i:37905532 original size:43 final size:42
Alignment explanation
Indices: 37905461--37905625 Score: 129
Period size: 43 Copynumber: 3.9 Consensus size: 42
37905451 CGGAAAGATC
* *
37905461 ATACAATGCCAATGTCCCAGATGTGGTCTTACATGAAATCAA
1 ATACGATGCCAATGTCCCAGATGTGGTCTTACACGAAATCAA
* *
37905503 ATATCGATGCCACTGTCCCAGATAG-GGTCTTACACGAAATCAG
1 ATA-CGATGCCAATGTCCCAGAT-GTGGTCTTACACGAAATCAA
* * * * * * *
37905546 ATACGATACCAACGTCCCATACGCT-GTCTTATAGGTAAGTCATA
1 ATACGATGCCAATGTCCCAGATG-TGGTCTTACACG-AAATCA-A
* **
37905590 AGT-CGATGCCAACGTCCCAGACATGGTCTTACACGA
1 A-TACGATGCCAATGTCCCAGATGTGGTCTTACACGA
37905626 TAACACATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 15
0.75 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 43 0.44
44 27 0.28
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGATGTGGTCTTACACGAAATCAA
Found at i:37914739 original size:42 final size:43
Alignment explanation
Indices: 37914638--37914797 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 43
37914628 AGTTCATACA
* * **
37914638 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCCAATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACATGAAATAAAATATCG
37914681 ATGCC-ACTGTCCTAGACAG-GGTCTTACATGAAATAAAATAT-G
1 ATGCCAAC-GTCCTAGAC-GTGGTCTTACATGAAATAAAATATCG
* * * *
37914723 ATGCCAACGTCCTAGACGTGGTCTTACACGTACATCATAAT-TCA
1 ATGCCAACGTCCTAGACGTGGTCTTACATG-AAAT-AAAATATCG
* * *
37914767 ATGCCAACATCCCAGACGCGGTCTTACATGA
1 ATGCCAACGTCCTAGACGTGGTCTTACATGA
37914798 TAACACATAT
Statistics
Matches: 98, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 39 0.40
44 31 0.32
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGTGGTCTTACATGAAATAAAATATCG
Found at i:37918516 original size:31 final size:31
Alignment explanation
Indices: 37918478--37918540 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
37918468 TTAAAAAAAT
37918478 TATTTTTGTTTGGTTGTGACACAAATGCATG
1 TATTTTTGTTTGGTTGTGACACAAATGCATG
37918509 TATTTTTGTTTGGTTGTGACACAAATGCATG
1 TATTTTTGTTTGGTTGTGACACAAATGCATG
37918540 T
1 T
37918541 CTGCTTTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.46
Consensus pattern (31 bp):
TATTTTTGTTTGGTTGTGACACAAATGCATG
Found at i:37920240 original size:23 final size:23
Alignment explanation
Indices: 37920209--37920278 Score: 122
Period size: 23 Copynumber: 3.0 Consensus size: 23
37920199 GACGTGTGGT
*
37920209 CCCACATGTGCCCGCTTTATGGG
1 CCCATATGTGCCCGCTTTATGGG
37920232 CCCATATGTGCCCGCTTTATGGG
1 CCCATATGTGCCCGCTTTATGGG
*
37920255 CCCATATGTGCCCGTTTTATGGG
1 CCCATATGTGCCCGCTTTATGGG
37920278 C
1 C
37920279 TTTAGGGCCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.13, C:0.31, G:0.26, T:0.30
Consensus pattern (23 bp):
CCCATATGTGCCCGCTTTATGGG
Found at i:37920421 original size:26 final size:27
Alignment explanation
Indices: 37920380--37920432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
37920370 ACCCCCAAAT
37920380 TGACAAAATAACTATTATGCCCCTATG
1 TGACAAAATAACTATTATGCCCCTATG
* *
37920407 TGAC-AAATGACTATTATGCCCTTATG
1 TGACAAAATAACTATTATGCCCCTATG
37920433 AGATGTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (27 bp):
TGACAAAATAACTATTATGCCCCTATG
Found at i:37922995 original size:12 final size:13
Alignment explanation
Indices: 37922959--37922996 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
37922949 AAATATTTGA
37922959 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
37922972 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
37922986 CTTG-TCTTAAT
1 CTTGTTCTTAAT
37922997 CTTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:37936430 original size:46 final size:46
Alignment explanation
Indices: 37936377--37936559 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
37936367 TATATATACA
* * * *
37936377 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
37936423 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATACC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
37936469 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
37936515 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
37936560 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37936602 original size:22 final size:22
Alignment explanation
Indices: 37936576--37936696 Score: 68
Period size: 22 Copynumber: 5.2 Consensus size: 22
37936566 TTCCACGTTC
*
37936576 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCGACCTT
* *
37936598 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
37936622 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
* * *
37936645 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGC-CATTCGACCTT
*
37936669 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
37936692 ATCAC
1 ATCAC
37936697 GCATATGCAT
Statistics
Matches: 74, Mismatches: 13, Indels: 24
0.67 0.12 0.22
Matches are distributed among these distances:
22 26 0.35
23 13 0.18
24 14 0.19
25 21 0.28
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:37936604 original size:47 final size:47
Alignment explanation
Indices: 37936533--37936873 Score: 423
Period size: 47 Copynumber: 7.1 Consensus size: 47
37936523 ACACATTTCG
* * * * * *
37936533 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
**
37936580 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37936627 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
**
37936674 CATTGGCCATTCGGCCTTATCACGCATATGCATGTTCACATTCATCACA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT--CA
37936723 TTGGCCATTCAGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 -----CATT--GGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37936777 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * **
37936824 CATTTGCCATTCGGCCTTACCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
37936871 CAT
1 CAT
37936874 AAAATCCTAA
Statistics
Matches: 262, Mismatches: 22, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
46 1 0.00
47 210 0.80
49 6 0.02
54 6 0.02
56 39 0.15
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:37936673 original size:25 final size:25
Alignment explanation
Indices: 37936598--37936676 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
37936588 ATTCTACCTT
*
37936598 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATATTCACATTC
* * * *
37936623 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCATATTC-ACATTC
37936645 ATCACATATATGCATATTCACATTC
1 ATCACATATATGCATATTCACATTC
37936670 ATCACAT
1 ATCACAT
37936677 TGGCCATTCG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 10 0.25
23 6 0.15
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATATTCACATTC
Found at i:37936722 original size:56 final size:55
Alignment explanation
Indices: 37936662--37936827 Score: 174
Period size: 56 Copynumber: 3.1 Consensus size: 55
37936652 ATATGCATAT
37936662 TCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATGCATGTTCACATTCA
1 TCACATTCATCACATTGGCCATTCGGCCTTATCAC-CATATGCATGTTCACATTCA
**
37936718 TCACATT-GGC-CATTCAGGCCATTCGGCCTTATCA-CATAT--ATG----CATGT--
1 TCACATTCATCACATT--GGCCATTCGGCCTTATCACCATATGCATGTTCACAT-TCA
* *
37936765 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTCATCACATTGGCCATTCGGCCTTATCAC-CATATGCATGTTCACATTCA
37936821 TCACATT
1 TCACATT
37936828 TGCCATTCGG
Statistics
Matches: 89, Mismatches: 6, Indels: 30
0.71 0.05 0.24
Matches are distributed among these distances:
47 24 0.27
48 4 0.04
49 9 0.10
51 3 0.03
52 3 0.03
54 10 0.11
55 4 0.04
56 32 0.36
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (55 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACCATATGCATGTTCACATTCA
Found at i:37936749 original size:103 final size:102
Alignment explanation
Indices: 37936627--37936839 Score: 365
Period size: 103 Copynumber: 2.1 Consensus size: 102
37936617 ACATTCATCA
37936627 CATT-GGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCT
1 CATTCGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCT
*
37936691 TATCACGCATATGCATGTTCACATTCATCACATTGGC
66 TATCACACATATGCATGTTCACATTCATCACATTGGC
*
37936728 CATTCAGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CATTC-GGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCC
* * *
37936793 TTATCTCATATATGCATGTTCACATTCATCACATTTGC
65 TTATCACACATATGCATGTTCACATTCATCACATTGGC
37936831 CATTCGGCC
1 CATTCGGCC
37936840 TTACCTCATA
Statistics
Matches: 105, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
101 4 0.04
102 4 0.04
103 97 0.92
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (102 bp):
CATTCGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCT
TATCACACATATGCATGTTCACATTCATCACATTGGC
Found at i:37936862 original size:150 final size:150
Alignment explanation
Indices: 37936584--37936873 Score: 472
Period size: 150 Copynumber: 1.9 Consensus size: 150
37936574 TCATCACATT
*
37936584 GGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
* * * **
37936649 CATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATGCATGTTCACA
66 CATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTACCACACATATACACATTCACA
37936714 TTCATCACATTGGCCATTCA
131 TTCATCACATTGGCCATTCA
* *
37936734 GGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCT
1 GGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
* * * *
37936799 CATATATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTACCTCATATATACACATTCACA
66 CATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTACCACACATATACACATTCACA
37936864 TTCATCACAT
131 TTCATCACAT
37936874 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
150 128 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (150 bp):
GGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTACCACACATATACACATTCACA
TTCATCACATTGGCCATTCA
Found at i:37940709 original size:28 final size:28
Alignment explanation
Indices: 37940678--37940834 Score: 136
Period size: 28 Copynumber: 5.5 Consensus size: 28
37940668 CTGACTGATT
*
37940678 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
37940706 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
37940735 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
37940763 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * **
37940792 TGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
37940820 TTGCACACACAGTGC
1 TCGCACACATAGTGC
37940835 CTCATAATTC
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
27 1 0.01
28 55 0.54
29 44 0.44
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:37940738 original size:29 final size:29
Alignment explanation
Indices: 37940705--37940806 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
37940695 GATTAAAGAA
37940705 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
37940734 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
37940762 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
37940791 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
37940807 TCGGTTGGAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:37940745 original size:57 final size:57
Alignment explanation
Indices: 37940678--37940838 Score: 232
Period size: 57 Copynumber: 2.8 Consensus size: 57
37940668 CTGACTGATT
* * *
37940678 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
37940735 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
37940792 TGGCACACATAGTGCTCGGTTGGAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
37940839 TAATTCCAGC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 94 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:37940911 original size:40 final size:40
Alignment explanation
Indices: 37940866--37941040 Score: 271
Period size: 40 Copynumber: 4.4 Consensus size: 40
37940856 CCTTCGAGGT
*
37940866 TTAGCCCAGATATATCACTAGCATGAATGCTCTTCGGAAC
1 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
37940906 TTAG-CCAGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCA-GATATATCACTAGCACGAATGCTCTTCGGAAC
* * *
37940946 TTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
37940986 TTAGCCCAGATATATCACTAGCACGAATGCTTTTCGGGAC
1 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
*
37941026 TTAGCCCGGATATAT
1 TTAGCCCAGATATAT
37941041 ATAACTCTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.02
40 120 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:37942575 original size:46 final size:46
Alignment explanation
Indices: 37942520--37942656 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
37942510 TATATATACA
* * * *
37942520 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
37942566 CTTCTCATACACGTTTCGCATTAGCCATTCAGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
37942612 CATCTCATATACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
37942657 ATACACTTCC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37942701 original size:47 final size:47
Alignment explanation
Indices: 37942630--37943064 Score: 584
Period size: 47 Copynumber: 9.1 Consensus size: 47
37942620 ATACATTTCG
* * * * * *
37942630 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
37942677 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37942724 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37942771 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37942818 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37942865 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT--CA
* *
37942914 TTGGCCATTCGGGCCATTCGGCCTTATCACACATTTGCATGTTCACATTCATCA
1 -----CATT--GGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
37942968 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * * **
37943015 CATTTGACATTCGACCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
37943062 CAT
1 CAT
37943065 AAAATCCTAA
Statistics
Matches: 357, Mismatches: 21, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.00
47 304 0.85
49 6 0.02
54 6 0.02
56 40 0.11
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:37942936 original size:103 final size:103
Alignment explanation
Indices: 37942822--37943027 Score: 367
Period size: 103 Copynumber: 2.0 Consensus size: 103
37942812 TCATCACATT
37942822 GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
37942887 CACATATGCATGTTCACATTCATCACATTGGCCATTCG
66 CACATATGCATGTTCACATTCATCACATTGGACATTCG
* *
37942925 GGCCATTCGGCCTTATCACACATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCT
1 GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
* *
37942990 CATATATGCATGTTCACATTCATCACATTTGACATTCG
66 CACATATGCATGTTCACATTCATCACATTGGACATTCG
37943028 ACCTTATCTC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (103 bp):
GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CACATATGCATGTTCACATTCATCACATTGGACATTCG
Found at i:37942947 original size:150 final size:150
Alignment explanation
Indices: 37942775--37943064 Score: 481
Period size: 150 Copynumber: 1.9 Consensus size: 150
37942765 TCATCACATT
37942775 GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
* * * **
37942840 CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
66 CACATATGCATGTTCACATTCATCACATTGGACATTCGACCTTATCACACATATACACATTCACA
37942905 TTCATCACATTGGCCATTCG
131 TTCATCACATTGGCCATTCG
* *
37942925 GGCCATTCGGCCTTATCACACATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCT
1 GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
* * * *
37942990 CATATATGCATGTTCACATTCATCACATTTGACATTCGACCTTATCTCATATATACACATTCACA
66 CACATATGCATGTTCACATTCATCACATTGGACATTCGACCTTATCACACATATACACATTCACA
37943055 TTCATCACAT
131 TTCATCACAT
37943065 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
150 129 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (150 bp):
GGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CACATATGCATGTTCACATTCATCACATTGGACATTCGACCTTATCACACATATACACATTCACA
TTCATCACATTGGCCATTCG
Found at i:37942971 original size:23 final size:23
Alignment explanation
Indices: 37942943--37943020 Score: 63
Period size: 23 Copynumber: 3.3 Consensus size: 23
37942933 GGCCTTATCA
37942943 CACATTTGCATGTTCACATTCAT
1 CACATTTGCATGTTCACATTCAT
* * *
37942966 CACATTGGCCA--TTCGGCCTT-AT
1 CACATTTG-CATGTTC-ACATTCAT
*
37942988 CTCATATATGCATGTTCACATTCAT
1 CACAT-T-TGCATGTTCACATTCAT
37943013 CACATTTG
1 CACATTTG
37943021 ACATTCGACC
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 9 0.22
23 15 0.38
24 7 0.17
25 9 0.22
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (23 bp):
CACATTTGCATGTTCACATTCAT
Found at i:37943065 original size:25 final size:23
Alignment explanation
Indices: 37943002--37943065 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
37942992 TATATGCATG
*
37943002 TTCACATTCATCACAT-TTGACA
1 TTCACATTCATCACATATTCACA
* *
37943024 TTCGACCTT-ATCTCATATATACACA
1 TTC-ACATTCATCACATAT-T-CACA
37943049 TTCACATTCATCACATA
1 TTCACATTCATCACATA
37943066 AAATCCTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
22 9 0.28
23 5 0.16
24 5 0.16
25 13 0.41
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (23 bp):
TTCACATTCATCACATATTCACA
Found at i:37945706 original size:15 final size:15
Alignment explanation
Indices: 37945686--37945750 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
37945676 GTATCTTAGG
37945686 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
37945701 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
37945716 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
37945731 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
37945745 TTTCTT
1 TTTCTT
37945751 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:37958783 original size:10 final size:10
Alignment explanation
Indices: 37958750--37958794 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
37958740 GACTTATTCT
37958750 TAAAAAATATA
1 TAAAAAATA-A
*
37958761 TAAAATAAAAA
1 TAAAA-AATAA
37958772 TAAAAAATAA
1 TAAAAAATAA
37958782 TAAAAAATAA
1 TAAAAAATAA
37958792 TAA
1 TAA
37958795 TTACATACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 17 0.55
11 11 0.35
12 3 0.10
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
TAAAAAATAA
Found at i:37964603 original size:10 final size:8
Alignment explanation
Indices: 37964570--37964598 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
37964560 AAATATTTTC
37964570 AAAAAT-A
1 AAAAATAA
37964577 AAAAATAA
1 AAAAATAA
37964585 AAAAATAA
1 AAAAATAA
37964593 AAAAAT
1 AAAAAT
37964599 TTAAATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAAATAA
Found at i:37972509 original size:28 final size:28
Alignment explanation
Indices: 37972466--37972529 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
37972456 TGGAAAGTAG
* * *
37972466 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
* *
37972494 TTGGGCCTGATAGGCCATGTGGACGAGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
37972522 TTGGGCCT
1 TTGGGCCT
37972530 AAAGGGGCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCATATGAACGAGA
Found at i:37972876 original size:27 final size:27
Alignment explanation
Indices: 37972846--37973155 Score: 273
Period size: 27 Copynumber: 11.7 Consensus size: 27
37972836 TAATAAAGAG
*
37972846 AAATTATCGAAATACCCCCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
37972873 AAATTATC-AAAGTACCCCCGGTTTGTA
1 AAATTATCGAAA-TACCCTCGATTTGTA
* * *
37972900 AAATTACCAAAATACCCTTGA-TTGTTA
1 AAATTATCGAAATACCCTCGATTTG-TA
* * * *
37972927 AATTTAACGAAATACCCTCAATTTATA
1 AAATTATCGAAATACCCTCGATTTGTA
*
37972954 AAATT-TCTGAAAT-CCCTCGA-TTGTG
1 AAATTATC-GAAATACCCTCGATTTGTA
*
37972979 AAATTA-CTGAAATACCC-CTAATTTGTA
1 AAATTATC-GAAATACCCTC-GATTTGTA
* *
37973006 AAATTATCGAAATACCCTC-AATTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
37973032 AAATTATTGAAATACCCTCGATTTTTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
37973059 AAATTATCAAAATACCC-AGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
37973085 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
37973111 AAATTA-CTAAAATACCGTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
37973138 AAATTACCGAAATACCCT
1 AAATTATCGAAATACCCT
37973156 TGTAGTGTAA
Statistics
Matches: 232, Mismatches: 35, Indels: 32
0.78 0.12 0.11
Matches are distributed among these distances:
25 17 0.07
26 85 0.37
27 122 0.53
28 8 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:37973017 original size:79 final size:81
Alignment explanation
Indices: 37972846--37973154 Score: 305
Period size: 79 Copynumber: 3.9 Consensus size: 81
37972836 TAATAAAGAG
* * * *
37972846 AAATTATCGAAATACCCCCGATTTGTAAAATTATC--AAAGTACCCCCGGTTTGTAAAATTACCA
1 AAATTATCGAAATACCCTC-AATTGTAAAATTATCTGAAA-TACCCTCGATTTGTAAAATTACCA
* *
37972909 AAATACCCTTGA-TTGTTA
64 AAATACCCCTAATTTG-TA
* * * * **
37972927 AATTTAACGAAATACCCTCAATTTATAAAATT-TCTGAAAT-CCCTCGA-TTGTGAAATTACTGA
1 AAATTATCGAAATACCCTCAA-TTGTAAAATTATCTGAAATACCCTCGATTTGTAAAATTACCAA
37972989 AATACCCCTAATTTGTA
65 AATACCCCTAATTTGTA
* * *
37973006 AAATTATCGAAATACCCTCAATTGTGAAATTAT-TGAAATACCCTCGATTTTTAAAATTATCAAA
1 AAATTATCGAAATACCCTCAATTGTAAAATTATCTGAAATACCCTCGATTTGTAAAATTACCAAA
37973070 ATA-CCC-AGATTTGTA
66 ATACCCCTA-ATTTGTA
* * * * * * *
37973085 AAATTACCAAAATACCCTCGATTGTGAAATTA-CTAAAATACCGTCGATTTGTAAAATTACCGAA
1 AAATTATCGAAATACCCTCAATTGTAAAATTATCTGAAATACCCTCGATTTGTAAAATTACCAAA
37973149 ATACCC
66 ATACCC
37973155 TTGTAGTGTA
Statistics
Matches: 189, Mismatches: 29, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
78 15 0.08
79 118 0.62
80 27 0.14
81 26 0.14
82 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTATCGAAATACCCTCAATTGTAAAATTATCTGAAATACCCTCGATTTGTAAAATTACCAAA
ATACCCCTAATTTGTA
Found at i:37973024 original size:53 final size:54
Alignment explanation
Indices: 37972846--37973155 Score: 273
Period size: 53 Copynumber: 5.8 Consensus size: 54
37972836 TAATAAAGAG
* * * * *
37972846 AAATTATCGAAATACCCCCGATTTGTAAAATTA-TCAAAGTACCCCCGGTTTGTA
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACTGAAA-TACCCTCGATTTGTA
* * * * *
37972900 AAATTACCAAAATACCCTTGA-TTGTTAAATTTAAC-GAAATACCCTCAATTTATA
1 AAATTATCAAAATACCCTCGATTTG-TAAAATT-ACTGAAATACCCTCGATTTGTA
* * *
37972954 AAATT-TCTGAAAT-CCCTCGA-TTGTGAAATTACTGAAATACCC-CTAATTTGTA
1 AAATTATC-AAAATACCCTCGATTTGTAAAATTACTGAAATACCCTC-GATTTGTA
* * * * *
37973006 AAATTATCGAAATACCCTC-AATTGTGAAATTATTGAAATACCCTCGATTTTTA
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* ** *
37973059 AAATTATCAAAATACCC-AGATTTGTAAAATTACCAAAATACCCTCGA-TTGTG
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* *
37973111 AAATTA-CTAAAATACCGTCGATTTGTAAAATTACCGAAATACCCT
1 AAATTATC-AAAATACCCTCGATTTGTAAAATTACTGAAATACCCT
37973156 TGTAGTGTAA
Statistics
Matches: 212, Mismatches: 31, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
51 4 0.02
52 49 0.23
53 111 0.52
54 44 0.21
55 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTATCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTA
Found at i:37973173 original size:27 final size:27
Alignment explanation
Indices: 37973134--37973196 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
37973124 ACCGTCGATT
*
37973134 TGTAAAATTACCGAAATACC-CTTGTAG
1 TGTAAAATGACCGAAATACCAC-TGTAG
**
37973161 TGTAAAATGACCGACTTACCACTGTAG
1 TGTAAAATGACCGAAATACCACTGTAG
37973188 TGTAAAATG
1 TGTAAAATG
37973197 CCTGTTTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCACTGTAG
Found at i:37977525 original size:40 final size:40
Alignment explanation
Indices: 37977377--37977600 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
37977367 TGAATGATGT
* * * *
37977377 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * * *
37977417 CCGGACTAAGAT-TCGAAGGAATTTGTGCGACTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* * *
37977457 CCGGGCTAAG-CCCGATGGCATTAGTGCGAGATACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
37977495 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37977536 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37977576 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37977601 AACGAGTAGC
Statistics
Matches: 153, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
39 30 0.20
40 113 0.74
41 10 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37986977 original size:27 final size:27
Alignment explanation
Indices: 37986946--37987124 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
37986936 TAAATTGTAC
37986946 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37986973 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37986999 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37987027 GGCACTAAGTTGTGCGAGTTTGACTATGT
1 AGCACTAAG-TGTGCGA-TTTGACTATGT
* *
37987056 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37987083 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37987110 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37987125 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 99 0.77
28 14 0.11
29 16 0.12
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37987061 original size:83 final size:81
Alignment explanation
Indices: 37986947--37987103 Score: 226
Period size: 83 Copynumber: 1.9 Consensus size: 81
37986937 AAATTGTACA
* *
37986947 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37987011 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37987028 GCACTAAGTTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAG-TGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
37987093 GTGCGAGTTGA
64 GTGCGAATTGA
37987104 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 8 0.12
82 7 0.10
83 51 0.76
84 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37987115 original size:83 final size:81
Alignment explanation
Indices: 37986943--37987124 Score: 222
Period size: 83 Copynumber: 2.2 Consensus size: 81
37986933 GATTAAATTG
* *
37986943 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37987008 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37987024 TGCGGCACTAAGTTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAG-TGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
37987088 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
37987107 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37987125 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
81 10 0.12
82 14 0.17
83 60 0.71
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37989130 original size:40 final size:40
Alignment explanation
Indices: 37988893--37989116 Score: 251
Period size: 40 Copynumber: 5.6 Consensus size: 40
37988883 TGAATGATGT
* * * *
37988893 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
37988933 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* * * *
37988973 CCGAGCTAAG-CCCGATGGCATTGGTGCGAGATACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37989011 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
37989052 CCGGGCTAAGTGCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37989092 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37989117 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
39 32 0.21
40 114 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37989139 original size:119 final size:119
Alignment explanation
Indices: 37988892--37989122 Score: 279
Period size: 119 Copynumber: 1.9 Consensus size: 119
37988882 TTGAATGATG
* * *
37988892 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATTT
* * **
37988957 GTGCGAGTTACTAATTCCGAGCTAAGCCCGATGGCATTGGTGCGAGATACTAAA
66 GTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGATACTAAA
* * * *
37989011 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TGCCAAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCAAAGGCAT
* * *
37989074 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
64 TTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAG
37989123 TAGCTATATT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
118 3 0.03
119 68 0.72
120 23 0.24
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATTT
GTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGATACTAAA
Found at i:37989147 original size:119 final size:119
Alignment explanation
Indices: 37988892--37989149 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
37988882 TTGAATGATG
* * * *
37988892 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAATCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATTT
* * **
37988957 GTGCGAGTTACTAATTCCGAGCTAAGCCCGATGGCATTGGTGCGAGATACTAAA
66 GTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGATACTAAA
* * * * *
37989011 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TGCCAAAGGCAT
1 TCCGGGTTAAATCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCAAAGGCAT
* * * *
37989074 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGATA-CTAAA
* *
37989131 TTC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
37989150 TATGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.72
120 29 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAATCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATTT
GTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGATACTAAA
Found at i:37993930 original size:79 final size:77
Alignment explanation
Indices: 37993828--37994051 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 77
37993818 GCTACTCATT
* *
37993828 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAA-TGCCTTCGGGACTTAGCCCGG
* *
37993893 ATTTAGTAACTCGCA
63 AATTAGTAACTCACA
* *
37993908 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGGA
*
37993972 ATTAGTATCTCACA
64 ATTAGTAACTCACA
* * * * * *
37993986 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
37994051 A
63 A
37994052 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 35 0.28
79 55 0.45
80 33 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAAT
TAGTAACTCACA
Found at i:37993945 original size:39 final size:40
Alignment explanation
Indices: 37993828--37994051 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
37993818 GCTACTCATT
* *
37993828 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
37993868 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
37993908 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
37993947 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
37993986 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
37994027 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37994052 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 75 0.46
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:38001314 original size:460 final size:460
Alignment explanation
Indices: 38000450--38001373 Score: 1767
Period size: 460 Copynumber: 2.0 Consensus size: 460
38000440 CATCACCACA
38000450 CTATCAAATCTCATTTTGGTACCTTTTGAAATGTATATAGTAAAGTATGGCATGTATAGGCTAGA
1 CTATCAAATCTCATTTTGGTACCTTTTGAAATGTATATAGTAAAGTATGGCATGTATAGGCTAGA
*
38000515 AGTACTTTGGATATGATTTGTAATGTTTATATTTAGATATGTGATATGGCTTGATAGGGTTGTGT
66 AGTACTTTAGATATGATTTGTAATGTTTATATTTAGATATGTGATATGGCTTGATAGGGTTGTGT
38000580 TTATGTTTTCATTTCGGTATATGAAATGTGATGTAAAATGACCTATTTGATGTGTTCATCAATAA
131 TTATGTTTTCATTTCGGTATATGAAATGTGATGTAAAATGACCTATTTGATGTGTTCATCAATAA
* *
38000645 GTTTTGGTATGAGATTTGGTCATGAGTTTAACGATTATGAAACCATATGTTTTGATATGATTTGA
196 GTTTTGGTATGAGATTCGGTCATGAGTTTAAAGATTATGAAACCATATGTTTTGATATGATTTGA
38000710 TCTTATGTTTTGGCACAATTGAGTTGAATTTATAAGCATGTAAATGGTTGACAATGTTATCGCAT
261 TCTTATGTTTTGGCACAATTGAGTTGAATTTATAAGCATGTAAATGGTTGACAATGTTATCGCAT
38000775 GAATGTTATATGGTTTGGTTTAGAAATTGGCTAAAATTGTTGTGTAAATATGCTTGGTTTGGTGC
326 GAATGTTATATGGTTTGGTTTAGAAATTGGCTAAAATTGTTGTGTAAATATGCTTGGTTTGGTGC
*
38000840 TTATAGGTTTGACCCAATTAGGGTGGCAAGTTGGCTATTCAAATGTGTCTCAGCCATGTGCAACA
391 TTATAGGCTTGACCCAATTAGGGTGGCAAGTTGGCTATTCAAATGTGTCTCAGCCATGTGCAACA
38000905 CAAGG
456 CAAGG
38000910 CTATCAAATCTCATTTTGGTACCTTTTGAAATGTATATAGTAAAGTATGGCATGTATAGGCTAGA
1 CTATCAAATCTCATTTTGGTACCTTTTGAAATGTATATAGTAAAGTATGGCATGTATAGGCTAGA
38000975 AGTACTTTAGATATGATTTGTAATGTTTATATTTAGATATGTGATATGGCTTGATAGGGTTGTGT
66 AGTACTTTAGATATGATTTGTAATGTTTATATTTAGATATGTGATATGGCTTGATAGGGTTGTGT
* *
38001040 TTATGTTTTCATTTCGGTATATGAAATGTGATGTAAAATGATCTATTTGATGTGTTCATGAATAA
131 TTATGTTTTCATTTCGGTATATGAAATGTGATGTAAAATGACCTATTTGATGTGTTCATCAATAA
*
38001105 GTTTTGGTATGAGATTCGGTCATGAGTTTAAAGATTATGAAACCATATGTTTTGATATGATTTTA
196 GTTTTGGTATGAGATTCGGTCATGAGTTTAAAGATTATGAAACCATATGTTTTGATATGATTTGA
*
38001170 TCTTATGTTTTGGCACAATTGAGTTGAGTTTATAAGCATGTAAATGGTTGACAATGTTATCGCAT
261 TCTTATGTTTTGGCACAATTGAGTTGAATTTATAAGCATGTAAATGGTTGACAATGTTATCGCAT
38001235 GAATGTTATATGGTTTGGTTTAGAAATTGGCTAAAATTGTTGTGTAAATATGCTTGGTTTGGTGC
326 GAATGTTATATGGTTTGGTTTAGAAATTGGCTAAAATTGTTGTGTAAATATGCTTGGTTTGGTGC
*
38001300 TTATAGGCTTGACCCAATTAGGGTGGCAAGTTGGCTATTCAAATGTGTCTCAGGCATGTGCAACA
391 TTATAGGCTTGACCCAATTAGGGTGGCAAGTTGGCTATTCAAATGTGTCTCAGCCATGTGCAACA
38001365 CAAGG
456 CAAGG
38001370 CTAT
1 CTAT
38001374 GTTACATGGT
Statistics
Matches: 455, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
460 455 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (460 bp):
CTATCAAATCTCATTTTGGTACCTTTTGAAATGTATATAGTAAAGTATGGCATGTATAGGCTAGA
AGTACTTTAGATATGATTTGTAATGTTTATATTTAGATATGTGATATGGCTTGATAGGGTTGTGT
TTATGTTTTCATTTCGGTATATGAAATGTGATGTAAAATGACCTATTTGATGTGTTCATCAATAA
GTTTTGGTATGAGATTCGGTCATGAGTTTAAAGATTATGAAACCATATGTTTTGATATGATTTGA
TCTTATGTTTTGGCACAATTGAGTTGAATTTATAAGCATGTAAATGGTTGACAATGTTATCGCAT
GAATGTTATATGGTTTGGTTTAGAAATTGGCTAAAATTGTTGTGTAAATATGCTTGGTTTGGTGC
TTATAGGCTTGACCCAATTAGGGTGGCAAGTTGGCTATTCAAATGTGTCTCAGCCATGTGCAACA
CAAGG
Found at i:38002548 original size:48 final size:48
Alignment explanation
Indices: 38002476--38002800 Score: 269
Period size: 48 Copynumber: 6.9 Consensus size: 48
38002466 GATATTTGGG
* * * * *
38002476 TGATATGTGTGCCAGTGTAAGACCAAGTCTGGAAAATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
38002524 CGATATGAAAGCCAGTGTAAGACCA----T--G-CATGGCATCGGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
38002565 TGTTGTGAGAGCTAGTGTAAGAACATGTCTGGGACATGGCATTGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
38002612 TTGATATGTGCGCTAGTGTAAG-CGCATGTCTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCCAGTGTAAGAC-CATGTCTGGGACATGGCATCGGCCA
* *
38002661 -CATTATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGG-CA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
38002708 TTGATACGGGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * * *
38002756 TCAGCATGTGAGGCAGTGTAACACCATGTTTGGAACATGGCATCG
1 TGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
38002801 ACAATTCACC
Statistics
Matches: 221, Mismatches: 40, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
41 31 0.14
44 1 0.00
45 1 0.00
47 7 0.03
48 176 0.80
49 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:38002688 original size:96 final size:96
Alignment explanation
Indices: 38002551--38002800 Score: 315
Period size: 96 Copynumber: 2.6 Consensus size: 96
38002541 TAAGACCATG
* ** * * *
38002551 CATGGCATCGGCGATGTTGTGAGAGCTAGTGTAAGAA-CATGTCTGGGACATGGCATTGGCATTG
1 CATGGCATCGGCCACATTATGAGAGCCAGTGTAA-AACCATGTCTGGGACATGGCATCGGCATTG
* * *
38002615 ATATGTGCGCTAGTGTAAG-CGCATGTCTGGGA
65 ATACGGGAGCTAGTGTAAGAC-CATGTCTGGGA
38002647 CATGGCATCGGCCACATTATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATTGA
1 CATGGCATCGGCCACATTATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATTGA
38002712 TACGGGAGCTAGTGTAAGACCATGTCTGGGA
66 TACGGGAGCTAGTGTAAGACCATGTCTGGGA
* ** * * * * *
38002743 CATGGCATCGGCCTCAGCATGTGAGGCAGTGTAACACCATGTTTGGAACATGGCATCG
1 CATGGCATCGGCCACATTATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCG
38002801 ACAATTCACC
Statistics
Matches: 135, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
95 2 0.01
96 132 0.98
97 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (96 bp):
CATGGCATCGGCCACATTATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATTGA
TACGGGAGCTAGTGTAAGACCATGTCTGGGA
Found at i:38010890 original size:43 final size:43
Alignment explanation
Indices: 38010742--38010890 Score: 162
Period size: 42 Copynumber: 3.5 Consensus size: 43
38010732 TGAGATATCG
* * * *
38010742 TGTAAGACCGTGTCTGGGACACAGGCCTCGATAC-GAGATTTACG
1 TGTAAGACCATGTCTAGGACACAGGCATCGATACTGA-A-TTACA
* *
38010786 TGTAAGACCATGTCTAGGACATAGGCATCG-TATCTG-ATTTCA
1 TGTAAGACCATGTCTAGGACACAGGCATCGATA-CTGAATTACA
*
38010828 TGTAAGATCC-TGTCTAGGACAGAGGCATCGATACTGAATTACA
1 TGTAAGA-CCATGTCTAGGACACAGGCATCGATACTGAATTACA
*
38010871 TGTAAGACCATGTCCAGGAC
1 TGTAAGACCATGTCTAGGAC
38010891 GTTGACATTG
Statistics
Matches: 90, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
42 34 0.38
43 28 0.31
44 27 0.30
45 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACACAGGCATCGATACTGAATTACA
Found at i:38023679 original size:30 final size:30
Alignment explanation
Indices: 38023620--38023679 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
38023610 ATTTACGAGC
* *
38023620 CTAGGGGTAAAATCATAATTTTGTAAAAAT
1 CTAGGGGCAAAATCATAATTTTGCAAAAAT
* * *
38023650 CTAGGGGCAAAATGATCATTTTGCCAAAAT
1 CTAGGGGCAAAATCATAATTTTGCAAAAAT
38023680 ATGATTTATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (30 bp):
CTAGGGGCAAAATCATAATTTTGCAAAAAT
Found at i:38024067 original size:48 final size:47
Alignment explanation
Indices: 38023996--38024229 Score: 238
Period size: 48 Copynumber: 4.9 Consensus size: 47
38023986 ATATTTGGGT
* *
38023996 GATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTTT-GGACATGGCATCGGCCAC
* * * *
38024044 GATATGAGAGCCAGTTTAAGACCATGTTTTGAACATGGCATCGGCAAT
1 GATATGAGAGCCAGTGTAAGACCATG-TTTGGACATGGCATCGGCCAC
* * * * *
38024092 GTTGTGAGGGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGG-CATT
1 GATATGAGAGCCAGTGTAAGACCATGT-TTGGACATGGCATCGGCCA-C
* * * *
38024139 GAGACGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCCTC
1 GATATGAGAGCCAGTGTAAGACCATGT-TTGGACATGGCATCGGCCAC
* * *
38024187 GACATGTGAGGCAGTGTAAGACCATGTTTGGACCATGGCATCG
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGA-CATGGCATCG
38024230 ACAATTCACC
Statistics
Matches: 153, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
46 2 0.01
47 39 0.25
48 108 0.71
49 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (47 bp):
GATATGAGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGGCCAC
Found at i:38024135 original size:95 final size:96
Alignment explanation
Indices: 38024005--38024229 Score: 264
Period size: 95 Copynumber: 2.4 Consensus size: 96
38023995 TGATATGTGT
* * * *
38024005 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTTTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGAGACGAGAGCCAGTGTAAGACCAT
*
38024069 GTTTTGAACATGGCATCGGCAATGTTGTGAGG
65 GTCTTGAACATGGCATCGGCAATGTTGTGAGG
* *
38024101 GCCAGTGTAAGACC-TGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCCAGTGTAAGACCATG
* * *
38024165 TCTTGGACATGGCATCGGC-CTCGACATGTGA-G
66 TCTTGAACATGGCATCGGCAAT-G--TTGTGAGG
*
38024197 G-CAGTGTAAGACCATGT-TTGGACCATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGA-CATGGCATCG
38024230 ACAATTCACC
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
94 3 0.03
95 75 0.67
96 29 0.26
97 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCCAGTGTAAGACCATG
TCTTGAACATGGCATCGGCAATGTTGTGAGG
Found at i:38026123 original size:43 final size:43
Alignment explanation
Indices: 38026058--38026230 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
38026048 TGCTCGTACA
* ** * *
38026058 ATGCC-ATATCCCAGATGTGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
** * ** * *
38026100 ATGCCTCTGTCCCAGACAAGGTCTTACACAAAATCAAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
38026143 ATGCCAATGTCCCTGACATGGTCTTACACGTATTCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * * *
38026186 ATGCCAATTTCCCAGACATGGTCTTACATGTAATCATATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
38026229 AT
1 AT
38026231 AACTTAATGT
Statistics
Matches: 100, Mismatches: 28, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 6 0.06
43 93 0.93
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:38041505 original size:47 final size:47
Alignment explanation
Indices: 38041427--38041829 Score: 621
Period size: 47 Copynumber: 8.6 Consensus size: 47
38041417 CCCTTCGGGA
* * * * *
38041427 CTTATCACATTTATACACTTTCACATCCATCA-AGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACA-TCGGCCATTAGGC
* * *
38041474 CCTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38041521 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38041568 CTTATCACAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
38041614 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38041663 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38041710 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38041757 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38041804 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
38041830 CACAATTATC
Statistics
Matches: 328, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
46 43 0.13
47 241 0.73
48 3 0.01
49 41 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38041506 original size:25 final size:25
Alignment explanation
Indices: 38041478--38041555 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
38041468 CTCGGCCCTG
38041478 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
** * *** *
38041503 TCACATCGA-CCA-TTAGGC-CTCA
1 TCACATATATACACTTTCACATTCA
38041525 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
38041550 TCACAT
1 TCACAT
38041556 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 10 0.28
23 5 0.14
24 5 0.14
25 16 0.44
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:38045951 original size:38 final size:38
Alignment explanation
Indices: 38045900--38046108 Score: 157
Period size: 38 Copynumber: 5.0 Consensus size: 38
38045890 TTTCAAATTA
*
38045900 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
38045938 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTAAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGT---T
* * *
38045979 GAATCAATATATGTAACCGTGGCATATCCACTTAACACCACGTTGCATGT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCAC---G--T-T
* **
38046029 ATCAATATGTGTAATTGTGGTATATCCACTTAGCACCACGTT
1 A-C---ATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
38046071 ACACGTATAACCGTGGTATATCCACTTAACACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
38046109 TTTTCATTCC
Statistics
Matches: 136, Mismatches: 19, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
38 66 0.49
41 2 0.01
42 2 0.01
43 2 0.01
44 1 0.01
45 4 0.03
47 26 0.19
48 27 0.20
50 5 0.04
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:38046054 original size:48 final size:48
Alignment explanation
Indices: 38045945--38046071 Score: 175
Period size: 48 Copynumber: 2.7 Consensus size: 48
38045935 GTTACATGTT
38045945 TAACCGTGGTATATCCACTTAGCACCACG-TAAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAAATGAATCAATATATG
* * ** * *
38045992 TAACCGTGGCATATCCACTTAACACCACGTTGCATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAAATGAATCAATATATG
**
38046040 TAATTGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGTATATCCACTTAGCACCACGTTA
38046072 CACGTATAAC
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 27 0.40
48 41 0.60
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAAATGAATCAATATATG
Found at i:38048378 original size:15 final size:15
Alignment explanation
Indices: 38048355--38048396 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
38048345 GAAGCCCAGA
38048355 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
38048370 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
38048385 ATAAGGAAATCC
1 ATAAGGAAATCC
38048397 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:38052120 original size:40 final size:40
Alignment explanation
Indices: 38052065--38052268 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
38052055 CGGATGATAA
* *
38052065 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
38052105 CCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
38052145 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
38052185 CCAGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
38052225 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
38052265 CCGG
1 CCGG
38052269 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38052194 original size:80 final size:80
Alignment explanation
Indices: 38052061--38052266 Score: 308
Period size: 80 Copynumber: 2.6 Consensus size: 80
38052051 TATTCGGATG
* * * * *
38052061 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGGC
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATA-TCCAGGCTAAGCCCCGAAGGC
* *
38052125 ATTTGTGTGAGTTACT
65 ATTTGTGCGAGTTACC
38052141 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCAGGCTAAGCCCCGAAGGCA
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCAGGCTAAGCCCCGAAGGCA
38052206 TTTGTGCGAGTTACC
66 TTTGTGCGAGTTACC
*
38052221 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTA-CTATATCC
38052267 GGTTAAATTC
Statistics
Matches: 116, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
79 2 0.02
80 113 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCAGGCTAAGCCCCGAAGGCA
TTTGTGCGAGTTACC
Found at i:38054974 original size:38 final size:38
Alignment explanation
Indices: 38054917--38054991 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
38054907 TCAAATTAAC
*
38054917 ATGTATAACCGTGGCATATCCACTTAGCACCACGTTAG
1 ATGTATAACCATGGCATATCCACTTAGCACCACGTTAG
* *
38054955 ATGTTTAACCATGGTATATCCACTTAGCACCACGTTA
1 ATGTATAACCATGGCATATCCACTTAGCACCACGTTA
38054992 ATGAATCAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (38 bp):
ATGTATAACCATGGCATATCCACTTAGCACCACGTTAG
Found at i:38055077 original size:85 final size:85
Alignment explanation
Indices: 38054917--38055122 Score: 313
Period size: 85 Copynumber: 2.4 Consensus size: 85
38054907 TCAAATTAAC
*
38054917 ATGTATAACCGTGGCATATCCACTTAGCACCACGTTAGATGTTTAACCATGGTATATCCACTTAG
1 ATGTA-AA-CGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAG
*
38054982 CACCACGTTAATGAATCAATAT
64 CACCACGTTAATGAATAAATAT
* * * **
38055004 ATGTAAACGTGACATATCTACTTAGAACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCA
1 ATGTAAACGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCA
*
38055069 CCATGTTAATGAATAAATAT
66 CCACGTTAATGAATAAATAT
*
38055089 ATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 ATGTAAACGTGGCATATCCACTTAGCACCACGTT
38055123 TTTTCATTCC
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 100 0.93
86 2 0.02
87 5 0.05
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (85 bp):
ATGTAAACGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCA
CCACGTTAATGAATAAATAT
Found at i:38056126 original size:48 final size:48
Alignment explanation
Indices: 38056050--38056229 Score: 236
Period size: 48 Copynumber: 3.8 Consensus size: 48
38056040 GGGATGTTGC
* *
38056050 ATGCCATGTCCCAGACATTGTCTCACACTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
* ** *
38056098 ATGCCATGTCCGAGACATGGTCTTACACTGGCACGTAT-TCAATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-ATCGTCG
* * * * *
38056146 ATGCCATGTCCCAGACATGGTCATGCATTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
*
38056194 ATGTCATGTCCCAGACATGGTCTTACACTGGCACAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
38056230 TTAGCACAGT
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
47 2 0.02
48 108 0.96
49 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
Found at i:38056214 original size:96 final size:97
Alignment explanation
Indices: 38056045--38056227 Score: 280
Period size: 96 Copynumber: 1.9 Consensus size: 97
38056035 AAATCGGGAT
* * *
38056045 GTTGCATGCCATGTCCCAGACATTGTCTCACACTGGCACACATATCATCGTCGATGCCATGTCCG
1 GTTGCATGCCATGTCCCAGACATGGTCTCACACTGGCACACATATCATCGCCGATGCCATGTCCC
38056110 AGACATGGTCTTACACTGGCACGTATTCAATC
66 AGACATGGTCTTACACTGGCACGTATTCAATC
* * * *
38056142 GTTG-ATGCCATGTCCCAGACATGGTCAT-GCATTGGCACATATATCATCGCCGATGTCATGTCC
1 GTTGCATGCCATGTCCCAGACATGGTC-TCACACTGGCACACATATCATCGCCGATGCCATGTCC
38056205 CAGACATGGTCTTACACTGGCAC
65 CAGACATGGTCTTACACTGGCAC
38056228 ACTTAGCACA
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
96 73 0.94
97 5 0.06
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (97 bp):
GTTGCATGCCATGTCCCAGACATGGTCTCACACTGGCACACATATCATCGCCGATGCCATGTCCC
AGACATGGTCTTACACTGGCACGTATTCAATC
Found at i:38060317 original size:50 final size:50
Alignment explanation
Indices: 38060173--38060409 Score: 226
Period size: 50 Copynumber: 4.7 Consensus size: 50
38060163 AACCGAAGCT
* * *
38060173 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
* * * *** *
38060222 ATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
* * * *
38060272 ATCTGATACACGTAGCAGCCTGCATTTAGTACTACATATGCGACCTAACT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
* * *
38060322 ATCT-AGTACACGTAGTAGCTTGCACTTAGCACTACACATGTGACCTAAAACA
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCT--AACA
* * * * * *
38060374 ATTTTAAACACATAGTAGCTTGCACATAGTACTACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACA
38060410 AATGTGTTCT
Statistics
Matches: 153, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
49 39 0.25
50 81 0.53
52 32 0.21
53 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
Found at i:38060358 original size:100 final size:99
Alignment explanation
Indices: 38060173--38060369 Score: 259
Period size: 100 Copynumber: 2.0 Consensus size: 99
38060163 AACCGAAGCT
* * * *
38060173 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATCCGGTACATGTAGT
1 ATCTGATACACATAGCAGCCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGT
*
38060238 AGCCTGCACTTAGTACTACACACATGACCTAACC
66 AGCCTGCACTTAGCACTACACACATGACCTAACC
* * * * * *
38060272 ATCTGATACACGTAGCAGCCTGCATTTAGTACTACATATGCGACCTAACTATCTAGTACACGTAG
1 ATCTGATACACATAGCAGCCTGCACTTAGTACTACACATGCAACC-AACAATCCAGTACACGTAG
* **
38060337 TAGCTTGCACTTAGCACTACACATGTGACCTAA
65 TAGCCTGCACTTAGCACTACACACATGACCTAA
38060370 AACAATTTTA
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
99 39 0.47
100 44 0.53
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (99 bp):
ATCTGATACACATAGCAGCCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGT
AGCCTGCACTTAGCACTACACACATGACCTAACC
Found at i:38066855 original size:48 final size:48
Alignment explanation
Indices: 38066620--38066855 Score: 328
Period size: 48 Copynumber: 4.9 Consensus size: 48
38066610 AATCCACATC
* * * *
38066620 TCATCACCGATGCCATGTCCCATACATGGTCTTACACTATCACACATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATA
*
38066668 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAAATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATA
* * * *
38066716 TAATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCACGTATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATA
* *
38066764 TCATCGTCGATGCCATGTCCCATACATGGTCTTACACTAGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATA
* * ** *
38066812 TTATTGTTGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
38066856 CTTAGCATGG
Statistics
Matches: 168, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 168 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATA
Found at i:38074735 original size:19 final size:19
Alignment explanation
Indices: 38074711--38074748 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
38074701 AAAACATAGT
38074711 TAAGCAACTATTTCAATTC
1 TAAGCAACTATTTCAATTC
38074730 TAAGCAACTATTTCAATTC
1 TAAGCAACTATTTCAATTC
38074749 AAATCTCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGCAACTATTTCAATTC
Found at i:38089367 original size:30 final size:30
Alignment explanation
Indices: 38089332--38089395 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
38089322 GAATTGATGC
38089332 TTTAAATGTTAATGATATTATCTATTTTAA
1 TTTAAATGTTAATGATATTATCTATTTTAA
38089362 TTTAAATGTTAATGATATTATCTATTTTAA
1 TTTAAATGTTAATGATATTATCTATTTTAA
38089392 TTTA
1 TTTA
38089396 CTCTAAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (30 bp):
TTTAAATGTTAATGATATTATCTATTTTAA
Found at i:38096833 original size:15 final size:15
Alignment explanation
Indices: 38096815--38096858 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
38096805 GAAGCCCAGA
38096815 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
38096830 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
38096845 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
38096859 TTTACAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:38099705 original size:56 final size:56
Alignment explanation
Indices: 38099609--38099778 Score: 175
Period size: 56 Copynumber: 3.0 Consensus size: 56
38099599 TTTGATGACA
* * **
38099609 TGATACATGCTAGGTCTGGGAGCTTGTGTAGCCCCATTGAGAGGCATGTAATTATG
1 TGATACATGCTAGGTCTGGGAGCTTATGTAGCTCTGTTGAGAGGCATGTAATTATG
* * **
38099665 TGGTACACGCTAGGTCTGGGAGCTTATGTAGCTCTGTTGAGAGGC--GTGGTTATG
1 TGATACATGCTAGGTCTGGGAGCTTATGTAGCTCTGTTGAGAGGCATGTAATTATG
* * *
38099719 TGATGCATGCTAGGTCCGGGTGTTCTTATGTAG-TCCTGTTGAGAGGCATGCTATATTATG
1 TGATACATGCTAGGTCTGGGAG--CTTATGTAGCT-CTGTTGAGAGGCATG-TA-ATTATG
38099779 ATTATGGCAC
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
54 24 0.26
55 1 0.01
56 60 0.65
58 1 0.01
59 1 0.01
60 5 0.05
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.33
Consensus pattern (56 bp):
TGATACATGCTAGGTCTGGGAGCTTATGTAGCTCTGTTGAGAGGCATGTAATTATG
Found at i:38102959 original size:57 final size:57
Alignment explanation
Indices: 38102890--38102997 Score: 198
Period size: 57 Copynumber: 1.9 Consensus size: 57
38102880 AAAGAACATT
38102890 GGTTTTCCCCCTTATCTATTGGTTAAATTGTTCCCATTTAGTTATCCTTAGAATATA
1 GGTTTTCCCCCTTATCTATTGGTTAAATTGTTCCCATTTAGTTATCCTTAGAATATA
* *
38102947 GGTTTTCCCCCTTATTTATTGGTTAAATTGTTCCTATTTAGTTATCCTTAG
1 GGTTTTCCCCCTTATCTATTGGTTAAATTGTTCCCATTTAGTTATCCTTAG
38102998 CATACATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (57 bp):
GGTTTTCCCCCTTATCTATTGGTTAAATTGTTCCCATTTAGTTATCCTTAGAATATA
Found at i:38108553 original size:21 final size:21
Alignment explanation
Indices: 38108519--38108572 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
38108509 ATTGTTTAGA
* *
38108519 AGGAAGTAGCTGTTCCAGAAG
1 AGGAAGTTGCTGTTCAAGAAG
* *
38108540 AGGAAGTTGTTGTTGAAGAAG
1 AGGAAGTTGCTGTTCAAGAAG
*
38108561 AAGAAGTTGCTG
1 AGGAAGTTGCTG
38108573 AAAATAAGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.35, T:0.24
Consensus pattern (21 bp):
AGGAAGTTGCTGTTCAAGAAG
Found at i:38114503 original size:14 final size:14
Alignment explanation
Indices: 38114484--38114510 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38114474 TAGGCATTTC
38114484 ATATGAAAATTTTG
1 ATATGAAAATTTTG
38114498 ATATGAAAATTTT
1 ATATGAAAATTTT
38114511 TTCGATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
ATATGAAAATTTTG
Found at i:38114603 original size:16 final size:18
Alignment explanation
Indices: 38114574--38114608 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
38114564 TGAATTCTAG
38114574 TAGCTATAAGGATT-AAA
1 TAGCTATAAGGATTCAAA
38114591 TAGCTAT-AGGATTCAAA
1 TAGCTATAAGGATTCAAA
38114608 T
1 T
38114609 CTAGAGGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (18 bp):
TAGCTATAAGGATTCAAA
Found at i:38117237 original size:20 final size:20
Alignment explanation
Indices: 38117212--38117251 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
38117202 TATGATCTTG
*
38117212 GTAAATGAATAGTAATATAT
1 GTAAATGAATAGTAAAATAT
* *
38117232 GTAAATTAATTGTAAAATAT
1 GTAAATGAATAGTAAAATAT
38117252 TCTGAAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (20 bp):
GTAAATGAATAGTAAAATAT
Found at i:38118867 original size:7 final size:7
Alignment explanation
Indices: 38118855--38118887 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
38118845 AATGGCTTTC
38118855 ATCAATT
1 ATCAATT
38118862 ATCAATT
1 ATCAATT
38118869 ATCAATT
1 ATCAATT
38118876 ATCAATT
1 ATCAATT
38118883 ATCAA
1 ATCAA
38118888 GTGGCAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (7 bp):
ATCAATT
Found at i:38118895 original size:21 final size:21
Alignment explanation
Indices: 38118855--38118895 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
38118845 AATGGCTTTC
* *
38118855 ATCAATTATCAATTATCAATT
1 ATCAATTATCAAGTAGCAATT
*
38118876 ATCAATTATCAAGTGGCAAT
1 ATCAATTATCAAGTAGCAAT
38118896 ATGTATTCTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (21 bp):
ATCAATTATCAAGTAGCAATT
Found at i:38119073 original size:12 final size:12
Alignment explanation
Indices: 38119056--38119082 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
38119046 AGCAAAACAG
38119056 GTTTTTAGCGGC
1 GTTTTTAGCGGC
38119068 GTTTTTAGCGGC
1 GTTTTTAGCGGC
38119080 GTT
1 GTT
38119083 CGAATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.33, T:0.44
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:38119136 original size:39 final size:39
Alignment explanation
Indices: 38119089--38119165 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
38119079 CGTTCGAATG
38119089 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
* ** *
38119128 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTT
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
38119166 TTTAAAAACG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (39 bp):
AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
Found at i:38119374 original size:40 final size:38
Alignment explanation
Indices: 38119251--38119390 Score: 122
Period size: 40 Copynumber: 3.6 Consensus size: 38
38119241 CCTTTGGTGG
* *
38119251 CTTTAGCGGCGCTTTCTAAAAACGCCGCTAAAGATTGAGT
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTAATG-TTGA-T
* * * ** *
38119291 -ATTAGCGGCGCTTTTTTAAAAATGACGCTATATGTACAC
1 CTTTAGCGGCGC-TTTTTAAAAACGCCGCTA-ATGTTGAT
38119330 CTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGAT
1 CTTTAGCGGCGCTTTTTA-AAAACGCCGCTAATG-TTGAT
* *
38119370 CTTTAGTGGCG-TTTTAAAAAA
1 CTTTAGCGGCGCTTTTTAAAAA
38119391 AATGCCGCAA
Statistics
Matches: 79, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
38 4 0.05
39 24 0.30
40 49 0.62
41 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (38 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTAATGTTGAT
Found at i:38119821 original size:50 final size:50
Alignment explanation
Indices: 38119767--38119878 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
38119757 ACTATTGTAA
* * *
38119767 GGTTTATGTATTATGGATTTAGAGATTATGGTTTATGGGTTAAAAGTT-AG
1 GGTTTATGT-TTATGGAGTTAGAGATTAAGGTTTAGGGGTTAAAAGTTAAG
* * * **
38119817 GGTTTATGGTTTATGGGGTTAGGGTTTAAGGTTTAGGGGTTAAGGGTTAAG
1 GGTTTAT-GTTTATGGAGTTAGAGATTAAGGTTTAGGGGTTAAAAGTTAAG
38119868 GGTTTATGTTT
1 GGTTTATGTTT
38119879 TATTGTTTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
50 41 0.79
51 11 0.21
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (50 bp):
GGTTTATGTTTATGGAGTTAGAGATTAAGGTTTAGGGGTTAAAAGTTAAG
Found at i:38119827 original size:7 final size:7
Alignment explanation
Indices: 38119813--38119924 Score: 64
Period size: 7 Copynumber: 15.6 Consensus size: 7
38119803 GGGTTAAAAG
38119813 TTAGGGT
1 TTAGGGT
*
38119820 TTATGGT
1 TTAGGGT
*
38119827 TTATGGGG
1 TTA-GGGT
38119835 TTAGGGT
1 TTAGGGT
*
38119842 TTAAGGT
1 TTAGGGT
38119849 TTAGGGGT
1 TTA-GGGT
*
38119857 TAAGGGT
1 TTAGGGT
*
38119864 TAAGGGT
1 TTAGGGT
* *
38119871 TTATGTT
1 TTAGGGT
**
38119878 TTATTGT
1 TTAGGGT
*
38119885 TTAAGGT
1 TTAGGGT
38119892 TTAAGGG-
1 TT-AGGGT
*
38119899 TTAGGGG
1 TTAGGGT
* *
38119906 CTAGGAAT
1 TTAGG-GT
38119914 TTAGGGT
1 TTAGGGT
38119921 TTAG
1 TTAG
38119925 ATTAATTAGT
Statistics
Matches: 80, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
6 4 0.05
7 59 0.74
8 17 0.21
ACGTcount: A:0.21, C:0.01, G:0.37, T:0.42
Consensus pattern (7 bp):
TTAGGGT
Found at i:38119840 original size:22 final size:22
Alignment explanation
Indices: 38119812--38119875 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
38119802 TGGGTTAAAA
*
38119812 GTTAGGGTTTATGGTTTATGGG
1 GTTAGGGTTTAAGGTTTATGGG
38119834 GTTAGGGTTTAAGGTTTA-GGG
1 GTTAGGGTTTAAGGTTTATGGG
38119855 GTTAAGGG-TTAAGGGTTTATG
1 GTT-AGGGTTTAA-GGTTTATG
38119876 TTTTATTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
21 10 0.26
22 27 0.71
23 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (22 bp):
GTTAGGGTTTAAGGTTTATGGG
Found at i:38126962 original size:43 final size:43
Alignment explanation
Indices: 38126902--38127097 Score: 275
Period size: 43 Copynumber: 4.6 Consensus size: 43
38126892 TAATTTTTTA
** * *
38126902 AAAGGTCATGATTTTTAGCGGCGTTTGTAGGAAAAGTGTCGCT
1 AAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCT
* * *
38126945 AAAAGTCATGACCTTTAGCGGCGTTTGTGGGATAAGCGCCGCT
1 AAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCT
* * *
38126988 AATGGTCATGACCTTTAGCGGCGTTTGTGGGATAAGTGACGCT
1 AAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCT
* *
38127031 AAAGGTCATGACCTTTAGCAGCGTTTGTGGGAAAAGTGCCACT
1 AAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCT
*
38127074 AAAGGTCATGACTTTTAGCGGCGT
1 AAAGGTCATGACCTTTAGCGGCGT
38127098 CGTCTTTAGC
Statistics
Matches: 135, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 135 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
AAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCT
Found at i:38130564 original size:86 final size:86
Alignment explanation
Indices: 38130437--38130604 Score: 264
Period size: 86 Copynumber: 2.0 Consensus size: 86
38130427 TATCCAAAAA
* * * * *
38130437 TCGAGCTATTCGTACAATTTACGAATATAATTTACACGGACAGATTTAAAAGATATTTTTGAATC
1 TCGAGCTATCCATACAATTTACGAATATAATTTACACGGACAAATTCAAAAGATATTTTCGAATC
*
38130502 TATTTTAACTAAATGCTAAAT
66 TATCTTAACTAAATGCTAAAT
* *
38130523 TCGAGCTATCCATACAATTTATGAATATAATTTACATGGACAAATTCAAAAGATATTTTCGAATC
1 TCGAGCTATCCATACAATTTACGAATATAATTTACACGGACAAATTCAAAAGATATTTTCGAATC
38130588 TATCTTAACTAAATGCT
66 TATCTTAACTAAATGCT
38130605 TTTGTAAACT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 74 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (86 bp):
TCGAGCTATCCATACAATTTACGAATATAATTTACACGGACAAATTCAAAAGATATTTTCGAATC
TATCTTAACTAAATGCTAAAT
Found at i:38132413 original size:31 final size:31
Alignment explanation
Indices: 38132351--38132417 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
38132341 TAATATGTAA
* *
38132351 TTATATATATAAATTTAGATTTTATGTAATT
1 TTATATATATAAATTTAGATTTAATCTAATT
38132382 TTATATATA-AAATTTTA-ATTTAATCTAAATT
1 TTATATATATAAA-TTTAGATTTAATCT-AATT
38132413 TTATA
1 TTATA
38132418 AATTATTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 10 0.31
31 22 0.69
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (31 bp):
TTATATATATAAATTTAGATTTAATCTAATT
Found at i:38136153 original size:19 final size:21
Alignment explanation
Indices: 38136126--38136176 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 21
38136116 TAAAACAAAA
*
38136126 TTTAGAAATATATT-TTATAT
1 TTTAGAAATATATTGTTAAAT
*
38136146 TTTA-AAAT-TTTTGTTAAAT
1 TTTAGAAATATATTGTTAAAT
*
38136165 TTTATAAATATA
1 TTTAGAAATATA
38136177 ACAAAAAGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 3 0.12
19 13 0.52
20 8 0.32
21 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (21 bp):
TTTAGAAATATATTGTTAAAT
Found at i:38147494 original size:44 final size:44
Alignment explanation
Indices: 38147425--38147516 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
38147415 CTGAAGTAAC
*
38147425 AGTAATAGTACGACACACAATGTGCCTCATCGACTTAA-AGTCGA
1 AGTAATAGTACGACACACAATGTGCCTCATCGACTCAACA-TCGA
** *
38147469 AGTAATAGTACGACAC-TTATAGTGCCTCATTGACTCAACATCGA
1 AGTAATAGTACGACACACAAT-GTGCCTCATCGACTCAACATCGA
38147513 AGTA
1 AGTA
38147517 TCCCTGAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 39 0.93
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (44 bp):
AGTAATAGTACGACACACAATGTGCCTCATCGACTCAACATCGA
Found at i:38149016 original size:23 final size:24
Alignment explanation
Indices: 38148960--38149018 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
38148950 AAATAAATTA
* *
38148960 TTTTATAACAAGTGTACATATATC
1 TTTTATTACAAATGTACATATATC
38148984 TATTTATTACAAATGTATCA-ATAT-
1 T-TTTATTACAAATGTA-CATATATC
38149008 TTTTATTACAA
1 TTTTATTACAA
38149019 TTGTCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 17 0.55
26 2 0.06
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (24 bp):
TTTTATTACAAATGTACATATATC
Found at i:38152262 original size:22 final size:24
Alignment explanation
Indices: 38152220--38152263 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
38152210 TAACTAAGTT
38152220 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
38152244 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
38152264 TTTTGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:38152873 original size:12 final size:12
Alignment explanation
Indices: 38152841--38152884 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
38152831 TTATTATAAC
38152841 AATAATTTAATAT
1 AATAATTTAA-AT
38152854 AATAATTTAAAT
1 AATAATTTAAAT
* **
38152866 AATTATTTATTT
1 AATAATTTAAAT
38152878 AATAATT
1 AATAATT
38152885 AATTATAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AATAATTTAAAT
Found at i:38152992 original size:14 final size:17
Alignment explanation
Indices: 38152973--38153010 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
38152963 ATTTATTTCT
38152973 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
38152987 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
38153004 TAATATA
1 TAATATA
38153011 GTTTATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:38154513 original size:24 final size:24
Alignment explanation
Indices: 38154481--38154574 Score: 118
Period size: 24 Copynumber: 3.9 Consensus size: 24
38154471 CTGTCAAGAG
38154481 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
* *
38154505 AGGATTTAGGAGTTGATAAAGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
*
38154529 AGGATTTAGGAGCAGATAAGGGA-
1 AGGATTTAGGAGCTGATAAGGGAT
* *
38154552 GGGAATCTAGGAGCTGATCAAGG
1 AGG-ATTTAGGAGCTGAT-AAGG
38154575 AACAAGAGGT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
23 2 0.03
24 54 0.90
25 4 0.07
ACGTcount: A:0.35, C:0.05, G:0.37, T:0.22
Consensus pattern (24 bp):
AGGATTTAGGAGCTGATAAGGGAT
Found at i:38156008 original size:27 final size:27
Alignment explanation
Indices: 38155969--38156079 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
38155959 GGAAGCGTCT
*
38155969 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
38155996 TGGTGGCTCTGCCACATATT-TCTGTTC
1 TGGTGGCTCTGCCACA-ATTATCTGATC
*
38156023 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
* * *
38156051 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAATTATCTGATC
38156077 TGG
1 TGG
38156080 CAGCCGTGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:38156074 original size:54 final size:54
Alignment explanation
Indices: 38155969--38156079 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
38155959 GGAAGCGTCT
* *
38155969 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
* * *
38156023 TGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTC
38156077 TGG
1 TGG
38156080 CAGCCGTGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
Found at i:38161110 original size:14 final size:14
Alignment explanation
Indices: 38161091--38161126 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
38161081 TTTATTCACT
38161091 TGTGACATTCATAG
1 TGTGACATTCATAG
38161105 TGTGACATTCATAG
1 TGTGACATTCATAG
38161119 TGTGACAT
1 TGTGACAT
38161127 ACCTGAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (14 bp):
TGTGACATTCATAG
Found at i:38161878 original size:6 final size:6
Alignment explanation
Indices: 38161852--38161897 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
38161842 AGGTTTTCGA
* * * *
38161852 AAATGG GAATGG GAATAG AAATGG AAATAG AAATGG AAATGG AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
38161898 TTGCAATCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:38163898 original size:16 final size:18
Alignment explanation
Indices: 38163877--38163909 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
38163867 ATGTTTAAGC
38163877 AAACATA-AAA-TAAAAA
1 AAACATATAAATTAAAAA
38163893 AAACATATAAATTAAAA
1 AAACATATAAATTAAAA
38163910 GTTTTATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (18 bp):
AAACATATAAATTAAAAA
Found at i:38163928 original size:45 final size:47
Alignment explanation
Indices: 38163879--38163970 Score: 127
Period size: 49 Copynumber: 2.0 Consensus size: 47
38163869 GTTTAAGCAA
*
38163879 ACATAAAAT-AAAA-AAAACATATAAATTAAAAGTTT-TATGTACACC
1 ACATAAAATAAAAACAAAACACATAAATTAAAA-TTTCTATGTACACC
38163924 ACATAAAATAAGAAAACAAAACACATAAATTAAAATTTCTATGTACA
1 ACATAAAAT-A-AAAACAAAACACATAAATTAAAATTTCTATGTACA
38163971 TCCCTTAGAC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
45 9 0.22
48 7 0.17
49 25 0.61
ACGTcount: A:0.59, C:0.12, G:0.04, T:0.25
Consensus pattern (47 bp):
ACATAAAATAAAAACAAAACACATAAATTAAAATTTCTATGTACACC
Found at i:38165672 original size:27 final size:27
Alignment explanation
Indices: 38165634--38165689 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
38165624 CTAATGAACC
38165634 TACACTGATTATATTGGTTGCCATCCT
1 TACACTGATTATATTGGTTGCCATCCT
*
38165661 TACACTGATTATATTGGTTGCTATCCT
1 TACACTGATTATATTGGTTGCCATCCT
38165688 TA
1 TA
38165690 GTTAGGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (27 bp):
TACACTGATTATATTGGTTGCCATCCT
Found at i:38166186 original size:25 final size:26
Alignment explanation
Indices: 38166158--38166206 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
38166148 CTATAAGAAT
*
38166158 AAAACCTACACTAAAAAT-AAAAGTG
1 AAAACCTAAACTAAAAATGAAAAGTG
*
38166183 AAAAGCTAAACTAAAAATGAAAAG
1 AAAACCTAAACTAAAAATGAAAAG
38166207 AAAAAGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.63, C:0.12, G:0.10, T:0.14
Consensus pattern (26 bp):
AAAACCTAAACTAAAAATGAAAAGTG
Found at i:38166211 original size:25 final size:25
Alignment explanation
Indices: 38166158--38166212 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
38166148 CTATAAGAAT
* * *
38166158 AAAACCTACACTAAAAATAAAAGTG
1 AAAAGCTAAACTAAAAATAAAAGTA
38166183 AAAAGCTAAACTAAAAATGAAAAG-A
1 AAAAGCTAAACTAAAAAT-AAAAGTA
38166208 AAAAG
1 AAAAG
38166213 GAAAAGAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.65, C:0.11, G:0.11, T:0.13
Consensus pattern (25 bp):
AAAAGCTAAACTAAAAATAAAAGTA
Found at i:38167202 original size:35 final size:35
Alignment explanation
Indices: 38167163--38167233 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
38167153 AAATGTGAGT
38167163 TGAATATGGACTAAATAGAAATAACGTAGCTTGTA
1 TGAATATGGACTAAATAGAAATAACGTAGCTTGTA
38167198 TGAATATGGACTAAATAGAAATAACGTAGCTTGTA
1 TGAATATGGACTAAATAGAAATAACGTAGCTTGTA
38167233 T
1 T
38167234 TTTTCTTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (35 bp):
TGAATATGGACTAAATAGAAATAACGTAGCTTGTA
Found at i:38167713 original size:46 final size:45
Alignment explanation
Indices: 38167660--38167754 Score: 118
Period size: 46 Copynumber: 2.1 Consensus size: 45
38167650 TATCAAAAAT
* *
38167660 GACCATAGTTAAAAGACACTATAGCAACATGACGGAAAATAAATAA
1 GACCATAGTTAAAAGAAACTATAGCAACAGGACGG-AAATAAATAA
* * * * *
38167706 GACCATAGTTGAAAGAAACTATGGCACCAGGTCGGGAATAAATAA
1 GACCATAGTTAAAAGAAACTATAGCAACAGGACGGAAATAAATAA
38167751 GACC
1 GACC
38167755 GTGGCTGAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 13 0.31
46 29 0.69
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (45 bp):
GACCATAGTTAAAAGAAACTATAGCAACAGGACGGAAATAAATAA
Found at i:38175428 original size:18 final size:18
Alignment explanation
Indices: 38175401--38175436 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
38175391 ACAGATTGGC
38175401 CACACAACCATGTTCTTA
1 CACACAACCATGTTCTTA
*
38175419 CACACGACCATGTTCTTA
1 CACACAACCATGTTCTTA
38175437 GGCCACATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.28
Consensus pattern (18 bp):
CACACAACCATGTTCTTA
Found at i:38185758 original size:20 final size:19
Alignment explanation
Indices: 38185733--38185781 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
38185723 GAAGGGAAAT
*
38185733 AAATTAAAAGTATTATTAAA
1 AAATTAAAAGTA-TAGTAAA
*
38185753 AAATTAATGAGTATAGTAAA
1 AAATTAA-AAGTATAGTAAA
*
38185773 ATATTAAAA
1 AAATTAAAA
38185782 AATAAATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 1 0.04
20 19 0.79
21 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (19 bp):
AAATTAAAAGTATAGTAAA
Found at i:38192153 original size:33 final size:33
Alignment explanation
Indices: 38192116--38192197 Score: 83
Period size: 33 Copynumber: 2.5 Consensus size: 33
38192106 GACGAGTAGA
** * * *
38192116 GTACTGCGGTGGATATGGGTCGAGGGTAGTGCT
1 GTACTGCGGTGGATACAGGCCGAGAGAAGTGCT
* * *
38192149 GTACTGCAGTTGATACAGGCCGAGAGAAGTGTT
1 GTACTGCGGTGGATACAGGCCGAGAGAAGTGCT
*
38192182 GTGCTGCGGTGGATAC
1 GTACTGCGGTGGATAC
38192198 GACCCAAAGA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.20, C:0.15, G:0.40, T:0.26
Consensus pattern (33 bp):
GTACTGCGGTGGATACAGGCCGAGAGAAGTGCT
Found at i:38210316 original size:12 final size:12
Alignment explanation
Indices: 38210296--38210329 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
38210286 TTTTTTAAAA
*
38210296 TATACTATTTTT
1 TATATTATTTTT
38210308 TATATTA-TTTT
1 TATATTATTTTT
38210319 TATATTATTTT
1 TATATTATTTT
38210330 AGTACATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TATATTATTTTT
Found at i:38210509 original size:155 final size:153
Alignment explanation
Indices: 38210261--38210790 Score: 774
Period size: 152 Copynumber: 3.5 Consensus size: 153
38210251 TATATTTTGG
* * *
38210261 TATTTATTTTATTTTCAAATTTTATTTTTTTAAAATATACTATTTT-TTATATTATTTTTATATT
1 TATTTATTTTATTTTCAGATTTTA-TTTTTTAAAATATACTATTTTCCTATTTTATTTTTATATT
*
38210325 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACT
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTTATTTAGTAAAAAACT
38210390 CTGATTTTGGCCCTTTGTTTTTAT
130 CTGATTTTGGCCCTTTGTTTTTAT
**
38210414 TATTTATTTTATTTTTGGATTTTATTTTTTAAAATATACTATTTTCCTATTTTATTTTTTTATAT
1 TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCCTATTTTA--TTTTTATAT
* * *
38210479 TATTTTAGTACATAATGGTTCGAATGTATTATTTCAGTATTTTTTATATTTATTTAGTAAAAAAC
64 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTTATTTAGTAAAAAAC
* *
38210544 TTTGATTTTGGGCCTTTGTTTTTAT
129 TCTGATTTTGGCCCTTTGTTTTTAT
* *
38210569 TATTTATTTTATTTTTAGA--TT-TTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATT
1 TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCCTATTTTA-TTTTTATATT
*
38210631 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAATGT-TTTTTTATATTTATTTAATAAAAAA
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTT-A-GTATTTTTTATATTTATTTAGTAAAAAA
38210695 CTCT-AGTTTTGGCCCTTTGTTTTTA-
128 CTCTGA-TTTTGGCCCTTTGTTTTTAT
* *
38210720 T-TTT-TTTTATTTTCATATTTTATTTTTTAAAATAAACTATTTTCGCT-TTTTATTTTTATATT
1 TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTC-CTATTTTATTTTTATATT
38210782 ATTTTAGTA
65 ATTTTAGTA
38210791 AAAAACCCGC
Statistics
Matches: 344, Mismatches: 23, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
149 11 0.03
150 3 0.01
151 65 0.19
152 122 0.35
153 32 0.09
155 111 0.32
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.60
Consensus pattern (153 bp):
TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCCTATTTTATTTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTTATTTAGTAAAAAACTC
TGATTTTGGCCCTTTGTTTTTAT
Found at i:38211082 original size:14 final size:12
Alignment explanation
Indices: 38211054--38211078 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38211044 GTATATAACA
38211054 TACATAGGCTTT
1 TACATAGGCTTT
38211066 TACATAGGCTTT
1 TACATAGGCTTT
38211078 T
1 T
38211079 TTACTTCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (12 bp):
TACATAGGCTTT
Found at i:38211414 original size:3 final size:3
Alignment explanation
Indices: 38211406--38211435 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
38211396 AATGCTGCCG
*
38211406 CCT CCT CCT CCT CCT CCT CCT ACT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
38211436 TCTTCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.03, C:0.63, G:0.00, T:0.33
Consensus pattern (3 bp):
CCT
Found at i:38211615 original size:27 final size:27
Alignment explanation
Indices: 38211574--38211640 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
38211564 ATCAGTGTAG
* * **
38211574 GGTGCCGCCTCTGGCAG-CCCAACCATT
1 GGTGCCGCCTATGGCAGTCCC-ACAACC
38211601 GGTGCCGCCTATGGCAGTCCCACAACC
1 GGTGCCGCCTATGGCAGTCCCACAACC
38211628 GGTGCCGCCTATG
1 GGTGCCGCCTATG
38211641 AGATACCCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.91
28 3 0.09
ACGTcount: A:0.15, C:0.39, G:0.28, T:0.18
Consensus pattern (27 bp):
GGTGCCGCCTATGGCAGTCCCACAACC
Found at i:38214917 original size:46 final size:47
Alignment explanation
Indices: 38214784--38215051 Score: 213
Period size: 46 Copynumber: 5.7 Consensus size: 47
38214774 TGCAGGTGCT
* * *
38214784 GATGCCATGTCCCAAACATGATCTTACACAAGCTCTAGCATATCTGT-GCC
1 GATGCCATGTCCCAGACATG-TCTTACACTAGCT-TA-CATCTC-GTAGCC
38214834 GATGCCATGTCCCAGACATAGTCTTACACT-GAC--ACATCTCGTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTCGTAGCC
*
38214880 GATG-CATGTCCCAGACATGTCTTACACTAGCTTACATCTCG-AGGCT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTA-GCC
* *
38214926 GAT-ACATGTCCCAGACATGTCTTACACTAGC--AC-TCGTC-TCAACAAC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTACATC-TCGT-AGC--C
* * * * *
38214972 TATGCCATATCTCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGTAGCC
38215020 GATG-CATGTCCCAGACATGTCTTACACTAGCT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCT
38215052 CATGCCAGTG
Statistics
Matches: 181, Mismatches: 16, Indels: 46
0.74 0.07 0.19
Matches are distributed among these distances:
43 2 0.01
44 16 0.09
45 19 0.10
46 68 0.38
47 25 0.14
48 17 0.09
49 1 0.01
50 29 0.16
51 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAGCC
Found at i:38217925 original size:205 final size:205
Alignment explanation
Indices: 38217573--38217988 Score: 823
Period size: 205 Copynumber: 2.0 Consensus size: 205
38217563 AATGGTAACG
*
38217573 ACAACAACAAAGTTGCTAAAAGAAGAAAAGGAAAAGATGAGATCTCTAGTGACCATGAAGGGGCT
1 ACAACAACAAAGTTGCTAAAAGAAGAAAAGGAAAAGATGAGATCTCTAGTGAACATGAAGGGGCT
38217638 AATAATATGCCATAATTAATTGTAACTTTGTATTAATTTTCCCATTTTGGAATGAAAAATTAAAC
66 AATAATATGCCATAATTAATTGTAACTTTGTATTAATTTTCCCATTTTGGAATGAAAAATTAAAC
38217703 TTTGAAAAATTCAAGTTTACTTGTTACTATTATGACATCATATCTTTTTGTGAACTTATTTCATC
131 TTTGAAAAATTCAAGTTTACTTGTTACTATTATGACATCATATCTTTTTGTGAACTTATTTCATC
38217768 TTTTCGTATA
196 TTTTCGTATA
38217778 ACAACAACAAAGTTGCTAAAAGAAGAAAAGGAAAAGATGAGATCTCTAGTGAACATGAAGGGGCT
1 ACAACAACAAAGTTGCTAAAAGAAGAAAAGGAAAAGATGAGATCTCTAGTGAACATGAAGGGGCT
38217843 AATAATATGCCATAATTAATTGTAACTTTGTATTAATTTTCCCATTTTGGAATGAAAAATTAAAC
66 AATAATATGCCATAATTAATTGTAACTTTGTATTAATTTTCCCATTTTGGAATGAAAAATTAAAC
38217908 TTTGAAAAATTCAAGTTTACTTGTTACTATTATGACATCATATCTTTTTGTGAACTTATTTCATC
131 TTTGAAAAATTCAAGTTTACTTGTTACTATTATGACATCATATCTTTTTGTGAACTTATTTCATC
38217973 TTTTCGTATA
196 TTTTCGTATA
38217983 ACAACA
1 ACAACA
38217989 TTGTTCATAC
Statistics
Matches: 210, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 210 1.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (205 bp):
ACAACAACAAAGTTGCTAAAAGAAGAAAAGGAAAAGATGAGATCTCTAGTGAACATGAAGGGGCT
AATAATATGCCATAATTAATTGTAACTTTGTATTAATTTTCCCATTTTGGAATGAAAAATTAAAC
TTTGAAAAATTCAAGTTTACTTGTTACTATTATGACATCATATCTTTTTGTGAACTTATTTCATC
TTTTCGTATA
Found at i:38218591 original size:69 final size:69
Alignment explanation
Indices: 38218500--38218834 Score: 217
Period size: 69 Copynumber: 4.9 Consensus size: 69
38218490 CCATTAGCTG
* ** * *
38218500 TGTTGGAGGCTATGATCATAAACCAACGAGCCTTTATAGTATCAGCTAGGAACGTAGGTTTGCTA
1 TGTTGGAGGTTACAATCATAAACCGACGAGCCTTTATAGTATCAGCTGGGAACGTAGGTTTGCTA
38218565 GCAA
66 GCAA
* * * * * * * *
38218569 TTTTGGAGGTTACAATCTTAAACCGACAAACCTTTAT-GACATCAGCTGGGAGCGCAGGTCTGCT
1 TGTTGGAGGTTACAATCATAAACCGACGAGCCTTTATAG-TATCAGCTGGGAACGTAGGTTTGCT
**
38218633 AGTTA
65 AGCAA
* ** * ** *
38218638 TGTTGGAGGTTGCAATCATAAACCGTTGAGCCTTTAGAGTATCAATTGGGAACGTAGGTTTGTTA
1 TGTTGGAGGTTACAATCATAAACCGACGAGCCTTTATAGTATCAGCTGGGAACGTAGGTTTGCTA
38218703 GC--
66 GCAA
*** * * ** * * * * ***
38218705 TGGTTTGGAGGTTGTGATCTTAAATCGGTGAACCTTTATGGCATAAGCTGGGAACGTAGGTCCAC
1 T-G-TTGGAGGTTACAATCATAAACCGACGAGCCTTTATAGTATCAGCTGGGAACGTAGGTTTGC
*
38218770 TAGCTA
64 TAGCAA
* * * * * * * *
38218776 TGTTGGAGGCTACAATTATAAACCGATGAGCTTTTAGAGTATTAGCTGGAAATGTAGGT
1 TGTTGGAGGTTACAATCATAAACCGACGAGCCTTTATAGTATCAGCTGGGAACGTAGGT
38218835 CCACTAGCTA
Statistics
Matches: 197, Mismatches: 63, Indels: 12
0.72 0.23 0.04
Matches are distributed among these distances:
67 1 0.01
68 2 0.01
69 191 0.97
70 2 0.01
71 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (69 bp):
TGTTGGAGGTTACAATCATAAACCGACGAGCCTTTATAGTATCAGCTGGGAACGTAGGTTTGCTA
GCAA
Found at i:38218597 original size:138 final size:138
Alignment explanation
Indices: 38218272--38218879 Score: 526
Period size: 138 Copynumber: 4.4 Consensus size: 138
38218262 ATTTTAACTG
* * *
38218272 GGAACGTA-GTTCACTAGCTATTTTAGAGGTTGCAATCTCAAACCAACAAACCTTTATGACATCA
1 GGAACGTAGGTTCACTAGCTATTTTAGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCA
* ** * * * * * ** *
38218336 GCTGAGAGTGTTGGTTCACTAGCTGTATAGGATGCTACT-ATCATAAATTGACAAAGCCTTTAGA
66 GCTGAGAGCGCAGGTCCACTAGCTATGTTGGAGGCTA-TGATCATAAACCGAC-GAGCCTTTAGA
38218400 GTATCAGCTA
129 GTATCAGCTA
* * * * * * *
38218410 GGAACATAGGTCCACGAGTTGTTTTAGAGGCTGCGATCTTAAACTGACAAACCTTTATGACATCA
1 GGAACGTAGGTTCACTAGCTATTTTAGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCA
* * * * * *
38218475 GTTGAGAGCGCAGTTCCATTAGCTGTGTTGGAGGCTATGATCATAAACCAACGAGCCTTTATAGT
66 GCTGAGAGCGCAGGTCCACTAGCTATGTTGGAGGCTATGATCATAAACCGACGAGCCTTTAGAGT
38218540 ATCAGCTA
131 ATCAGCTA
** * * * *
38218548 GGAACGTAGGTTTGCTAGCAATTTTGGAGGTTACAATCTTAAACCGACAAACCTTTATGACATCA
1 GGAACGTAGGTTCACTAGCTATTTTAGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCA
* ** * **
38218613 GCTGGGAGCGCAGGTCTGCTAGTTATGTTGGAGG-T-TGCAATCATAAACCGTTGAGCCTTTAGA
66 GCTGAGAGCGCAGGTCCACTAGCTATGTTGGAGGCTATG--ATCATAAACCGACGAGCCTTTAGA
** *
38218676 GTATCAATTG
129 GTATCAGCTA
*** ** * * * *** * *
38218686 GGAACGTAGGTTTGTTAGCTGGTTTGGAGGTTGTGATCTTAAATCGGTGAACCTTTATGGCATAA
1 GGAACGTAGGTTCACTAGCTATTTTAGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCA
* * * ** * * *
38218751 GCTGGGAACGTAGGTCCACTAGCTATGTTGGAGGCTACAATTATAAACCGATGAGCTTTTAGAGT
66 GCTGAGAGCGCAGGTCCACTAGCTATGTTGGAGGCTATGATCATAAACCGACGAGCCTTTAGAGT
*
38218816 ATTAGCT-
131 ATCAGCTA
* * *
38218823 GGAAATGTAGGTCCACTAGCTATTTTAGAGGTTGCGAT-TTAAACCGGCAAACCTTTA
1 GG-AACGTAGGTTCACTAGCTATTTTAGAGGTTGCGATCTTAAACCGACAAACCTTTA
38218880 GATTATACTA
Statistics
Matches: 372, Mismatches: 91, Indels: 15
0.78 0.19 0.03
Matches are distributed among these distances:
136 2 0.01
137 19 0.05
138 266 0.72
139 85 0.23
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (138 bp):
GGAACGTAGGTTCACTAGCTATTTTAGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCA
GCTGAGAGCGCAGGTCCACTAGCTATGTTGGAGGCTATGATCATAAACCGACGAGCCTTTAGAGT
ATCAGCTA
Found at i:38224978 original size:27 final size:28
Alignment explanation
Indices: 38224894--38224991 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
38224884 CATGAGATTG
* * * *
38224894 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
38224923 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
38224951 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
38224978 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
38224992 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:38225002 original size:27 final size:27
Alignment explanation
Indices: 38224922--38225004 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
38224912 TAAATTGTAC
* *
38224922 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
38224950 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
38224977 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
38225004 A
1 A
38225005 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:38225005 original size:29 final size:27
Alignment explanation
Indices: 38224894--38225005 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
38224884 CATGAGATTG
** * *
38224894 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
38224923 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
38224951 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
38224978 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
38225006 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Done.