Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 131 of 311
Found at i:44172201 original size:28 final size:28
Alignment explanation
Indices: 44172170--44172326 Score: 136
Period size: 28 Copynumber: 5.5 Consensus size: 28
44172160 CTGACTAATT
*
44172170 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
44172198 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
44172227 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
44172255 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * **
44172284 TGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
44172312 TTGCACACACAGTGC
1 TCGCACACATAGTGC
44172327 CTCATAATTC
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
27 1 0.01
28 55 0.54
29 44 0.44
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:44172230 original size:29 final size:29
Alignment explanation
Indices: 44172197--44172298 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
44172187 GATTAAAGAA
44172197 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
44172226 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
44172254 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
44172283 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
44172299 TCGGTTGGAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:44172237 original size:57 final size:57
Alignment explanation
Indices: 44172170--44172330 Score: 232
Period size: 57 Copynumber: 2.8 Consensus size: 57
44172160 CTGACTAATT
* * *
44172170 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
44172227 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
44172284 TGGCACACATAGTGCTCGGTTGGAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
44172331 TAATTCCAGA
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 94 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:44172403 original size:40 final size:40
Alignment explanation
Indices: 44172358--44172612 Score: 420
Period size: 40 Copynumber: 6.4 Consensus size: 40
44172348 CCTTCGAGTT
*
44172358 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
44172398 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
44172438 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* * *
44172478 TTAGCTCGGATACATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* * *
44172518 TTAGCCTGGATATATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
44172558 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGTAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
44172598 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
44172613 ATAACTCTCA
Statistics
Matches: 200, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 200 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:44178111 original size:13 final size:13
Alignment explanation
Indices: 44178093--44178130 Score: 67
Period size: 13 Copynumber: 2.8 Consensus size: 13
44178083 GTTTTTACAT
44178093 TTATGCATGATTA
1 TTATGCATGATTA
44178106 TTATGCATGATTA
1 TTATGCATGATTA
44178119 TTATGACATGAT
1 TTATG-CATGAT
44178131 CAGAGTAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (13 bp):
TTATGCATGATTA
Found at i:44181658 original size:131 final size:131
Alignment explanation
Indices: 44181420--44181679 Score: 430
Period size: 131 Copynumber: 2.0 Consensus size: 131
44181410 AAGGGAAAGG
* * * * *
44181420 GTGAAGTACATTACAGCATCCACTGTGCCTTTGACTATGTTCAGTGATATTGTTAAACAACTTCA
1 GTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTCCAGTGACATTGTTAAACAACTTCA
* * *
44181485 GTTGCCAAATAAGAGGTTGATTTTAGATTGTTGTACATGGTGGAATGCAACATATGCTATGTTGG
66 ATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTTGG
44181550 T
131 T
*
44181551 GTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTCCAGTGACATTGTTAAGCAACTTCA
1 GTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTCCAGTGACATTGTTAAACAACTTCA
*
44181616 ATTGCCAAATAAGAGATTTATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTTG
66 ATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTTG
44181680 TCATGTGTAT
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 119 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (131 bp):
GTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTCCAGTGACATTGTTAAACAACTTCA
ATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTTGG
T
Found at i:44186078 original size:46 final size:46
Alignment explanation
Indices: 44186028--44186203 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
44186018 TGATTGAGCA
44186028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
* ** *
44186074 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAA-T--G
* *
44186119 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
* *
44186167 -CTCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTAGGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGG
44186204 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
Found at i:44186184 original size:93 final size:93
Alignment explanation
Indices: 44186025--44186195 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
44186015 GGATGATTGA
*
44186025 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGTCCGAACTCGTTGAGT
44186090 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
44186118 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGTC-CGAACTCGTTGAG
*
44186182 TTGAGTTCGAGTTC
65 TTGAGTCCGAGTTC
44186196 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:44189284 original size:65 final size:65
Alignment explanation
Indices: 44189180--44189310 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
44189170 CCCCTAGGGT
*
44189180 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCGTGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
44189245 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
44189310 T
1 T
44189311 GCATGGGACT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:44200477 original size:26 final size:26
Alignment explanation
Indices: 44200429--44200479 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
44200419 CTCAAAATGG
* *
44200429 AACACTTAAAAAGAATTCCTAAAGAA
1 AACACTGAAAAAGAATCCCTAAAGAA
44200455 AACACTGAAAAAGAA-CCCATAAAGA
1 AACACTGAAAAAGAATCCC-TAAAGA
44200480 TTCAAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.59, C:0.18, G:0.10, T:0.14
Consensus pattern (26 bp):
AACACTGAAAAAGAATCCCTAAAGAA
Found at i:44201442 original size:108 final size:108
Alignment explanation
Indices: 44201253--44201467 Score: 313
Period size: 108 Copynumber: 2.0 Consensus size: 108
44201243 GCTTATGGTG
* * * * *
44201253 ATTGTAACAGCTCGATATCGGGCCTAGTTGGAACAATGGTTTCAGGACCACAAATCCGATGCAAG
1 ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
**
44201318 AAAATTTATTTTTATTATACTTTTATGGTCTACAATTTCACGA
66 AAAATTTATTTTTATTATACTTTTATCATCTACAATTTCACGA
* * * * *
44201361 ATTGTAACAGCTCAATTTTGGGACTAGTCGAAACAGTGGTTTCGGGACCACAAATCCGACGTAAG
1 ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
*
44201426 AAAATTTATTTTTATTATATTTTTATCATCTACAATTTCACG
66 AAAATTTATTTTTATTATACTTTTATCATCTACAATTTCACG
44201468 GAATGATTTC
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 94 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (108 bp):
ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
AAAATTTATTTTTATTATACTTTTATCATCTACAATTTCACGA
Found at i:44209765 original size:24 final size:24
Alignment explanation
Indices: 44209738--44209786 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
44209728 TCACTCTTTG
44209738 TTTAGCCGAA-TTTTGGACTCCCTA
1 TTTA-CCGAATTTTTGGACTCCCTA
*
44209762 TTTACTGAATTTTTGGACTCCCTA
1 TTTACCGAATTTTTGGACTCCCTA
44209786 T
1 T
44209787 ACTTTTCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.43
Consensus pattern (24 bp):
TTTACCGAATTTTTGGACTCCCTA
Found at i:44210608 original size:27 final size:27
Alignment explanation
Indices: 44210568--44210635 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
44210558 TTACCTAGAC
*
44210568 CCCTTATGTTGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
44210595 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * *
44210622 TCGTTATATGGTAA
1 CCCTTATGTGGTAA
44210636 GGTGACTGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:44210641 original size:27 final size:27
Alignment explanation
Indices: 44210568--44210647 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
44210558 TTACCTAGAC
* * *
44210568 CCCTTATGTTGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
*
44210595 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
* * **
44210622 TCGTTATATGGTAAGGTGACTGTTTT
1 CCCTTATATGGTAAAATGACTGTTTT
44210648 TCCCGATGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.12, G:0.21, T:0.44
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTGTTTTG
Found at i:44216785 original size:50 final size:50
Alignment explanation
Indices: 44216715--44216855 Score: 176
Period size: 50 Copynumber: 2.8 Consensus size: 50
44216705 CACATAATAA
* * * * *
44216715 GATGTCAATGTCATATCCCAGATATGGTCTTACAT-AGATTCACACATATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGA-TCACAAATATC
* *
44216765 GATGCCAATGCCATGGCCCAGACATGGTCTTACATGGGATCACAAATATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATCACAAATATC
* * *
44216815 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATC
44216856 TCATATTGAA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 78 0.98
51 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATCACAAATATC
Found at i:44224015 original size:22 final size:22
Alignment explanation
Indices: 44223987--44224062 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
44223977 AAGTGTGTAT
44223987 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
44224009 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
44224033 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
44224056 ATGTGAT
1 ATGTGAT
44224063 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:44224021 original size:47 final size:47
Alignment explanation
Indices: 44223952--44224154 Score: 286
Period size: 47 Copynumber: 4.3 Consensus size: 47
44223942 AGCTTAAGAT
44223952 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
44223999 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
44224046 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGAGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
44224093 CGAATGGTAAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
44224138 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
44224155 AAAGTTTGCA
Statistics
Matches: 139, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
45 21 0.15
46 6 0.04
47 112 0.81
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:44224279 original size:39 final size:40
Alignment explanation
Indices: 44224225--44224309 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
44224215 AAATGAATTG
* * * *
44224225 TGCTGAGATTGTATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
*
44224264 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
44224304 TGCTGG
1 TGCTGG
44224310 TGAATTAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 18 0.45
40 22 0.55
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:44226944 original size:40 final size:41
Alignment explanation
Indices: 44226889--44227039 Score: 193
Period size: 40 Copynumber: 3.8 Consensus size: 41
44226879 GGATATAACT
* *
44226889 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* *
44226929 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
*
44226969 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT--AGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* ** *
44227008 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
44227040 TTTTCATCCA
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 31 0.31
40 67 0.67
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:44235090 original size:40 final size:39
Alignment explanation
Indices: 44235046--44235196 Score: 187
Period size: 40 Copynumber: 3.8 Consensus size: 39
44235036 GGATATAACT
* *
44235046 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT--AGTA
*
44235086 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGTA
* *
44235126 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
* ** *
44235165 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
44235197 TTTTCATCCA
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 32 0.33
40 64 0.65
42 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
Found at i:44240670 original size:33 final size:33
Alignment explanation
Indices: 44240615--44240688 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 33
44240605 AAGTTATCGT
*
44240615 ATAAGACCATAGCCGAGCTATGGCA-ATCGAATA
1 ATAAGACCATAACCGAGCTATGGCATA-CGAATA
* * * *
44240648 ATAAGACCATAATCGGGTTATGGCATACGAATG
1 ATAAGACCATAACCGAGCTATGGCATACGAATA
44240681 A-AAGACCA
1 ATAAGACCA
44240689 CGGCAAGGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 7 0.20
33 27 0.77
34 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (33 bp):
ATAAGACCATAACCGAGCTATGGCATACGAATA
Found at i:44244680 original size:51 final size:51
Alignment explanation
Indices: 44244565--44244665 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
44244555 AGAAAGAGAG
* * *
44244565 AATTTCAAGTCGGTAATAAGGTATTCTTAAAAGTATCACCTTGGAAGAAAT
1 AATTTCAAGTTGGTGATAAGATATTCTTAAAAGTATCACCTTGGAAGAAAT
44244616 AATTTCAAGTTGGTGATAAGATATTCTTAAAAGTATCACCTTGGAAGAAA
1 AATTTCAAGTTGGTGATAAGATATTCTTAAAAGTATCACCTTGGAAGAAA
44244666 ATTCTCCAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32
Consensus pattern (51 bp):
AATTTCAAGTTGGTGATAAGATATTCTTAAAAGTATCACCTTGGAAGAAAT
Found at i:44246456 original size:24 final size:24
Alignment explanation
Indices: 44246393--44246464 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
44246383 TTATTACATT
* *
44246393 GCTCTTAGTGAGCTTCTCGA-TATG
1 GCTCTTA-TGAGCTTCCCGATTATA
* * *
44246417 GTTCTTTGTGAACTTCCCGATTATA
1 GCTC-TTATGAGCTTCCCGATTATA
44246442 GCTCTTATGAGCTTCCC-ATTATA
1 GCTCTTATGAGCTTCCCGATTATA
44246465 TAGCCTGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
23 6 0.16
24 24 0.63
25 8 0.21
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.40
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCCGATTATA
Found at i:44248672 original size:37 final size:37
Alignment explanation
Indices: 44248629--44248898 Score: 202
Period size: 37 Copynumber: 7.4 Consensus size: 37
44248619 TAGTCAATGC
*
44248629 CAACCTTTAAAAAAGGTTGAGATAAACCTGTTTAAGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* **
44248666 CAACCTTTAAAAAAGGTT-AGGATAGA-CTCGTCTAAAA
1 CAACCTTTAAAAAAGGTTGA-GATAAACCT-GTCTAAGG
*
44248703 CAA-CTTT-AAAAAGGTTG-GCATATACCTTGTCTAAGG
1 CAACCTTTAAAAAAGGTTGAG-ATAAACC-TGTCTAAGG
* * *
44248739 AAACCTTTAAAAAAGGTTGAGATAAAGCTGTCTATGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* * * * **
44248776 C-ACC-TT-AAAAGGGTTGGGATAGACCTCATCTAAAA
1 CAACCTTTAAAAAAGGTTGAGATAAACCT-GTCTAAGG
* * * *
44248811 CAACCTTTAAAATATGTTGAGATAGACCTATCTAAGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* * *
44248848 CAACC-TT-AAAAAGGTTGGGATAGATA-TTGTTTAAGG
1 CAACCTTTAAAAAAGGTTGAGATA-A-ACCTGTCTAAGG
*
44248884 CAACCCTTAAAAAAG
1 CAACCTTTAAAAAAG
44248899 TCTAAGGCAA
Statistics
Matches: 183, Mismatches: 33, Indels: 33
0.73 0.13 0.13
Matches are distributed among these distances:
34 17 0.09
35 32 0.17
36 36 0.20
37 60 0.33
38 37 0.20
39 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (37 bp):
CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
Found at i:44248772 original size:73 final size:72
Alignment explanation
Indices: 44248629--44248898 Score: 242
Period size: 73 Copynumber: 3.7 Consensus size: 72
44248619 TAGTCAATGC
* * * *
44248629 CAACCTTTAAAAAAGGTTGAGATAAACC-TGTTTAAGGCAACCTTTAAAAAAGGTT-AGGATAGA
1 CAACC-TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTAAAAAAGGTTGA-GATAGA
**
44248692 CTCGTCTAAAA
63 CT-GTCTAAGG
* * * *
44248703 CAACTTTAAAAAGGTTGGCATATACCTTGTCTAAGGAAACCTTTAAAAAAGGTTGAGATAAAGCT
1 CAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTAAAAAAGGTTGAGATAGA-CT
*
44248768 GTCTATGG
65 GTCTAAGG
* ** * * *
44248776 C-ACCTTAAAAGGGTTGGGATAGACCTCATCTAA-AACAACCTTTAAAATATGTTGAGATAGACC
1 CAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGA-AACCTTTAAAAAAGGTTGAGATAGA-C
*
44248839 TATCTAAGG
64 TGTCTAAGG
** * * *
44248848 CAACCTTAAAAAGGTTGGGATAGATATTGTTTAAGGCAACCCTTAAAAAAG
1 CAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTAAAAAAG
44248899 TCTAAGGCAA
Statistics
Matches: 156, Mismatches: 34, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
71 1 0.01
72 73 0.47
73 75 0.48
74 7 0.04
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (72 bp):
CAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTAAAAAAGGTTGAGATAGACTG
TCTAAGG
Found at i:44248911 original size:58 final size:56
Alignment explanation
Indices: 44248841--44248952 Score: 179
Period size: 58 Copynumber: 2.0 Consensus size: 56
44248831 GATAGACCTA
* *
44248841 TCTAAGGCAACCTTAAAAAGGTTGGGATAGATATTGTTTAAGGCAACCCTTAAAAAAG
1 TCTAAGGCAACCTTAAAAAGGTTGGGATAGA-ATCGTCTAAGGCAA-CCTTAAAAAAG
*
44248899 TCTAAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCTAAGGCAACCTTAAAAA
1 TCTAAGGCAACCTTAAAAAGGTTGGGATAGAATCGTCTAAGGCAACCTTAAAAA
44248953 GGTTGCGATA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 9 0.18
57 11 0.22
58 31 0.61
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (56 bp):
TCTAAGGCAACCTTAAAAAGGTTGGGATAGAATCGTCTAAGGCAACCTTAAAAAAG
Found at i:44248944 original size:35 final size:36
Alignment explanation
Indices: 44248898--44248974 Score: 129
Period size: 35 Copynumber: 2.2 Consensus size: 36
44248888 CCTTAAAAAA
*
44248898 GTCTAAGGCAACCTTAAAAAGGTTGGGATAGA-CTC
1 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
*
44248933 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTT
1 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
44248969 GTCTAA
1 GTCTAA
44248975 AGGTTGGGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 31 0.79
36 8 0.21
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (36 bp):
GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
Found at i:44248977 original size:58 final size:58
Alignment explanation
Indices: 44248915--44249032 Score: 193
Period size: 58 Copynumber: 2.0 Consensus size: 58
44248905 GCAACCTTAA
* * *
44248915 AAAGGTTGGGATAGACTCGTCTAAGGCAACCTTAAAAAGGTT-GCGATAGACCTTGTCT
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAG-GATAGACCTTGTCT
44248973 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
44249031 AA
1 AA
44249033 GGCAACCTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
58 55 0.98
59 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (58 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
Found at i:44248997 original size:22 final size:23
Alignment explanation
Indices: 44248950--44248998 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
44248940 GCAACCTTAA
*
44248950 AAAGGTTGCGATAGACCTTGTCT
1 AAAGGTTGCGATAGACCTCGTCT
*
44248973 AAAGGTTGGGATAGACC-CGTCT
1 AAAGGTTGCGATAGACCTCGTCT
44248995 AAAG
1 AAAG
44248999 CAACCCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (23 bp):
AAAGGTTGCGATAGACCTCGTCT
Found at i:44249020 original size:35 final size:35
Alignment explanation
Indices: 44248973--44249210 Score: 176
Period size: 35 Copynumber: 6.7 Consensus size: 35
44248963 GACCTTGTCT
*
44248973 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
* * *
44249008 AAAGGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAGGTTGGGATAGACC-CGTCTAAAGCAACC-TTAA
** ** *
44249045 AAAGGTTAAGATAGAGTCTTCTAATA-CAACCTTAA
1 AAAGGTTGGGATAGACCCGTCTAA-AGCAACCTTAA
* * *
44249080 AAAGTTTGGGATATACCTTGTCT-AAGACAACCTTTAA
1 AAAGGTTGGGATAGACC-CGTCTAAAG-CAACC-TTAA
* * * *
44249117 AAAGGTTGGGATAGACCCGTTTAAGGCAATCTTTA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
* * * *
44249152 AAAGGTTGGGATAAACCCAT-TTAAGACAATCTTAA
1 AAAGGTTGGGATAGACCCGTCTAAAG-CAACCTTAA
* * * *
44249187 AAGGGTTGGAATAAACACGTCTAA
1 AAAGGTTGGGATAGACCCGTCTAA
44249211 GGAAGTTTTT
Statistics
Matches: 158, Mismatches: 35, Indels: 19
0.75 0.17 0.09
Matches are distributed among these distances:
34 4 0.03
35 77 0.49
36 39 0.25
37 38 0.24
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (35 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
Found at i:44249038 original size:36 final size:36
Alignment explanation
Indices: 44248973--44249164 Score: 185
Period size: 35 Copynumber: 5.4 Consensus size: 36
44248963 GACCTTGTCT
* * *
44248973 AAAGGTTGGGATAGACC-CGTCTAAAGCAACCCTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
*
44249008 AAAGGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TTAA
** * **
44249045 AAAGGTTAAGATAGA-GTCT-TCTAATACAACCTTAA
1 AAAGGTTGGGATAGACCT-TGTCTAAGGCAACCTTAA
* * *
44249080 AAAGTTTGGGATATACCTTGTCTAAGACAACCTTTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TTAA
* * * *
44249117 AAAGGTTGGGATAGACC-CGTTTAAGGCAATCTTTA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
44249152 AAAGGTTGGGATA
1 AAAGGTTGGGATA
44249165 AACCCATTTA
Statistics
Matches: 130, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
35 48 0.37
36 45 0.35
37 37 0.28
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (36 bp):
AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
Found at i:44249130 original size:72 final size:72
Alignment explanation
Indices: 44248973--44249164 Score: 224
Period size: 72 Copynumber: 2.7 Consensus size: 72
44248963 GACCTTGTCT
*
44248973 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGGCAA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACAA
44249038 CCTTTAA
66 CCTTTAA
** ** * * * * *
44249045 AAAGGTTAAGATAGAGTCTTCTAATA-CAACCTTAAAAAGTTTGGGATATACCTTGTCTAAGACA
1 AAAGGTTGGGATAGACCCGTCTAA-AGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACA
44249109 ACCTTTAA
65 ACCTTTAA
* * * * * *
44249117 AAAGGTTGGGATAGACCCGTTTAAGGCAATCTTTAAAAGGTTGGGATA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATA
44249165 AACCCATTTA
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
72 97 0.99
73 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (72 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACAA
CCTTTAA
Found at i:44250126 original size:16 final size:16
Alignment explanation
Indices: 44250105--44250140 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
44250095 AGGTGAAATC
* *
44250105 AATAAACTGTTATAAA
1 AATAAAATGTTAAAAA
44250121 AATAAAATGTTAAAAA
1 AATAAAATGTTAAAAA
44250137 AATA
1 AATA
44250141 TTGTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGTTAAAAA
Found at i:44254960 original size:5 final size:5
Alignment explanation
Indices: 44254950--44254981 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
44254940 CAATTTGTGG
44254950 AAATA AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AAATA AA
44254982 GAACACAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:44255643 original size:129 final size:129
Alignment explanation
Indices: 44255411--44255674 Score: 368
Period size: 129 Copynumber: 2.0 Consensus size: 129
44255401 GTGTCGGCAT
* ** * *
44255411 AGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
1 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
* * * *
44255476 AAATGATTGGCCAAAGCGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCGGCCCAAA
66 AAAAGATTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
* *
44255540 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCTTTATAC
1 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
* * * * *
44255605 AAAA-AGTTGGCCAAAGCATATGTCGGCAAGTGTTTCCCAACATTTAAGAAAGTGTCGCCCCAAA
66 AAAAGA-TTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
44255669 AGTGTC
1 AGTGTC
44255675 TGTCCTAAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
128 1 0.01
129 117 0.99
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (129 bp):
AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
AAAAGATTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
Found at i:44257082 original size:23 final size:24
Alignment explanation
Indices: 44257056--44257115 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
44257046 CCCATTTTTG
* **
44257056 AAAATA-TTAATTTTTTTAATATT
1 AAAATATTTAAATTTTAAAATATT
44257079 AAAA-ATTTAAATTTTAAAATATT
1 AAAATATTTAAATTTTAAAATATT
*
44257102 AAAATCAATTAAAT
1 AAAAT-ATTTAAAT
44257116 AAATTATTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 1 0.03
23 22 0.73
25 7 0.23
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAAATATTTAAATTTTAAAATATT
Found at i:44259099 original size:40 final size:40
Alignment explanation
Indices: 44259044--44259258 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
44259034 CGGATGATAA
* *
44259044 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
44259084 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
44259124 CC-GGCTAAGTCCCG-AGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
44259162 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
44259202 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
44259241 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
44259259 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 38 0.24
39 39 0.24
40 83 0.52
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:44259177 original size:78 final size:79
Alignment explanation
Indices: 44259044--44259258 Score: 285
Period size: 78 Copynumber: 2.7 Consensus size: 79
44259034 CGGATGATAA
* * * *
44259044 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
44259109 TGCGAGTTATTACAT
65 TGCGAGTTACTACAT
44259124 CC-GGCTAAGTCCCG-AGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
44259187 TGCGAGTTACTATAT
65 TGCGAGTTACTACAT
* * * *
44259202 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCCGGGCTAAGTCCCGAAGG
44259259 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 75 0.62
79 39 0.32
80 7 0.06
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTACAT
Found at i:44267313 original size:40 final size:40
Alignment explanation
Indices: 44267130--44267312 Score: 276
Period size: 40 Copynumber: 4.6 Consensus size: 40
44267120 CGGATGATAA
* *
44267130 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
44267170 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
44267210 CTGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
44267250 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
44267290 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
44267313 GAGCGAATAG
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:44285391 original size:46 final size:46
Alignment explanation
Indices: 44285324--44285491 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
44285314 TATTTGGGCA
44285324 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAGCG
* ** * ** *
44285370 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACT-AGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATGGATGTGA-GCG
* * * * *
44285417 TCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAGCG
* *
44285463 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
44285492 GCTTATGGGC
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 63 0.64
47 35 0.36
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAGCG
Found at i:44285400 original size:20 final size:20
Alignment explanation
Indices: 44285331--44285400 Score: 50
Period size: 20 Copynumber: 3.2 Consensus size: 20
44285321 GCATCCGAAC
44285331 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
* * **
44285351 TCATTTATGGATGTGAGCGTCCGAAC
1 TCGTTGA--G-T-TGA--GTCCGAGT
44285377 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
44285397 TCGT
1 TCGT
44285401 GAGATGTAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
20 15 0.42
22 4 0.11
23 2 0.06
24 4 0.11
26 11 0.31
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (20 bp):
TCGTTGAGTTGAGTCCGAGT
Found at i:44285479 original size:93 final size:93
Alignment explanation
Indices: 44285320--44285492 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
44285310 GGGATATTTG
* * * * *
44285320 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
44285385 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
44285413 GGCATCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
44285478 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
44285493 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:44287850 original size:44 final size:43
Alignment explanation
Indices: 44287787--44287906 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 43
44287777 CATGTATCGT
44287787 ATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCGC
1 ATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGC-CGC
* *
44287831 ATCCATAATGAACTCGGACCAACTCAACGAGCTCCGATGCCTC
1 ATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCCGC
* * * *
44287874 ATACATATCATGAACCCGGACCAATTTAACGAG
1 ATCCATA--ATGAACTCGGACCAACTCAACGAG
44287907 TTCGAATTTC
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
43 8 0.12
44 39 0.57
45 21 0.31
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (43 bp):
ATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCCGC
Found at i:44292162 original size:26 final size:24
Alignment explanation
Indices: 44292123--44292279 Score: 117
Period size: 26 Copynumber: 6.5 Consensus size: 24
44292113 GAACTTACCG
* * *
44292123 CAGCTCGTATGAGCTTATTGATATGT
1 CAGCTCGTAAGAGCTTACTG-T-TCT
44292149 CAGCTCGTAAGAGCTTACTGTTCT
1 CAGCTCGTAAGAGCTTACTGTTCT
* *
44292173 CAGCTCGTATGAACTTACTG-T-T
1 CAGCTCGTAAGAGCTTACTGTTCT
* *
44292195 CAGCTCGTTAGAGCTTACCGTT-T
1 CAGCTCGTAAGAGCTTACTGTTCT
* *
44292218 CTGCTC-AATAGAGCTTACTGTTCAT
1 CAGCTCGTA-AGAGCTTACTGTTC-T
* *
44292243 CAGCTCAGGAAGAGCTTACCGTTCAT
1 CAGCTC-GTAAGAGCTTACTGTTC-T
*
44292269 -AGCTCGAAAGA
1 CAGCTCGTAAGA
44292280 ACGGAGAATG
Statistics
Matches: 108, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
22 17 0.16
23 20 0.19
24 25 0.23
25 12 0.11
26 33 0.31
27 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTGTTCT
Found at i:44292200 original size:22 final size:24
Alignment explanation
Indices: 44292148--44292281 Score: 89
Period size: 24 Copynumber: 5.6 Consensus size: 24
44292138 TATTGATATG
*
44292148 TCAGCTCGTAAGAGCTTACTGTTC
1 TCAGCTCGTAAGAACTTACTGTTC
*
44292172 TCAGCTCGTATGAACTTACTG-T-
1 TCAGCTCGTAAGAACTTACTGTTC
* * *
44292194 TCAGCTCGTTAGAGCTTACCGTT-
1 TCAGCTCGTAAGAACTTACTGTTC
* * *
44292217 TCTGCTC-AATAGAGCTTACTGTTC
1 TCAGCTCGTA-AGAACTTACTGTTC
* * *
44292241 ATCAGCTCAGGAAGAGCTTACCGTTC
1 -TCAGCTC-GTAAGAACTTACTGTTC
*
44292267 AT-AGCTCGAAAGAAC
1 -TCAGCTCGTAAGAAC
44292282 GGAGAATGAT
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
22 17 0.19
23 20 0.22
24 25 0.28
25 11 0.12
26 15 0.17
27 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (24 bp):
TCAGCTCGTAAGAACTTACTGTTC
Found at i:44292419 original size:20 final size:20
Alignment explanation
Indices: 44292394--44292432 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
44292384 TATGGTAAAG
44292394 TACTATTGATACGAATGAAT
1 TACTATTGATACGAATGAAT
* *
44292414 TACTATTTATACGATTGAA
1 TACTATTGATACGAATGAA
44292433 AGTAAAATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (20 bp):
TACTATTGATACGAATGAAT
Found at i:44294130 original size:47 final size:47
Alignment explanation
Indices: 44294058--44294226 Score: 186
Period size: 47 Copynumber: 3.6 Consensus size: 47
44294048 GTAAGGTGCT
*
44294058 GATGCCATGTCCCAGACACGGTCTTACATTGACTCATATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACATTGACTCATATCTCAAGTC
* * *
44294105 GAAGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGTC
1 GATGCCATGTCCCAGACATGGTCTTACATTGACTCAT-ATCTC-AAGTC
* * *
44294153 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-T-TCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACA-TTG-ACTCATATCTCAA-GTC
*
44294199 GATGCCATGTCCCAAACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
44294227 CTGGTTCTCG
Statistics
Matches: 103, Mismatches: 11, Indels: 15
0.80 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 18 0.17
47 65 0.63
48 18 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACATTGACTCATATCTCAAGTC
Found at i:44297175 original size:8 final size:8
Alignment explanation
Indices: 44297161--44297204 Score: 79
Period size: 8 Copynumber: 5.5 Consensus size: 8
44297151 GGCAAAAGTT
44297161 GAAATGCC
1 GAAATGCC
*
44297169 AAAATGCC
1 GAAATGCC
44297177 GAAATGCC
1 GAAATGCC
44297185 GAAATGCC
1 GAAATGCC
44297193 GAAATGCC
1 GAAATGCC
44297201 GAAA
1 GAAA
44297205 AGTTGAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (8 bp):
GAAATGCC
Found at i:44297182 original size:16 final size:16
Alignment explanation
Indices: 44297161--44297220 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
44297151 GGCAAAAGTT
44297161 GAAATGCCAAAATGCC
1 GAAATGCCAAAATGCC
*
44297177 GAAATGCCGAAATGCC
1 GAAATGCCAAAATGCC
**
44297193 GAAATGCCGAAAA-GTT
1 GAAATGCC-AAAATGCC
44297209 GAAATGCCAAAA
1 GAAATGCCAAAA
44297221 AACCAAAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
15 4 0.10
16 32 0.82
17 3 0.08
ACGTcount: A:0.45, C:0.20, G:0.22, T:0.13
Consensus pattern (16 bp):
GAAATGCCAAAATGCC
Found at i:44297212 original size:24 final size:24
Alignment explanation
Indices: 44297154--44297220 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
44297144 ATGAATCGGC
44297154 AAAAGTTGAAATGCCAAAATGCCG
1 AAAAGTTGAAATGCCAAAATGCCG
* ** *
44297178 AAATGCCGAAATGCCGAAATGCCG
1 AAAAGTTGAAATGCCAAAATGCCG
44297202 AAAAGTTGAAATGCCAAAA
1 AAAAGTTGAAATGCCAAAA
44297221 AACCAAAAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (24 bp):
AAAAGTTGAAATGCCAAAATGCCG
Found at i:44297480 original size:29 final size:28
Alignment explanation
Indices: 44297421--44297537 Score: 85
Period size: 29 Copynumber: 4.1 Consensus size: 28
44297411 GTGAGCATGA
* * * * *
44297421 ATATGAATGTGACTGGACCTAACGGACC
1 ATATAAATGTGATTGGGCCTAATGGGCC
44297449 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * * *
44297478 ATATACAGGTGATTTGGGCTTGATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
44297507 ATATGAATGAGA-TGGGCC-AAGTGGGCC
1 ATATAAATGTGATTGGGCCTAA-TGGGCC
44297534 ATAT
1 ATAT
44297538 GCATGTATGT
Statistics
Matches: 70, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 14 0.20
28 11 0.16
29 44 0.63
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:44298611 original size:17 final size:18
Alignment explanation
Indices: 44298578--44298612 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
44298568 TTTTAAGAAG
44298578 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
44298596 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
44298613 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:44299196 original size:30 final size:30
Alignment explanation
Indices: 44299162--44299218 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
44299152 TTTTGAGCAG
*
44299162 AGGGGCAAAATGGTCATTTTGCCAAAGCTT
1 AGGGGCAAAATGGTCATTTTACCAAAGCTT
*
44299192 AGGGGTAAAATGGTCATTTTACCAAAG
1 AGGGGCAAAATGGTCATTTTACCAAAG
44299219 GTGTAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTACCAAAGCTT
Found at i:44299693 original size:46 final size:45
Alignment explanation
Indices: 44299546--44299759 Score: 202
Period size: 46 Copynumber: 4.6 Consensus size: 45
44299536 TGTGTGAGCT
* * *
44299546 AGTGTAAGACATGTCTGGGACATGCATCGACTACAATATGTGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCT-CAAGATGTAAGCC
* * *
44299592 AGTGTAAGACCATGTCTGGGACATGACATCGGCATCAAGATG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATC-GCCTCAAGATGTA-AGCC
*
44299640 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCAAGATGTAAGCC
* ** * * *
44299686 AGTGTAAGACATGT-TGGGACATGCATTGGTTGCGAGA--TATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCT-CAAGATGTAAGCC
44299729 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
44299760 GCACCTTACC
Statistics
Matches: 141, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
43 13 0.09
44 7 0.05
45 24 0.17
46 43 0.30
47 31 0.22
48 21 0.15
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCAAGATGTAAGCC
Found at i:44307403 original size:46 final size:46
Alignment explanation
Indices: 44307353--44307469 Score: 146
Period size: 46 Copynumber: 2.5 Consensus size: 46
44307343 TGTAGTCGAC
* * *
44307353 GCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCCAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAGGCCGAT
**
44307399 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATTCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
*
44307445 GCCATGTCCTAGACATGGTCTTACA
1 G-CATGTCCCAGACAT-GTCTTACA
44307470 TTGGTTCTCG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
46 40 0.65
47 14 0.23
48 8 0.13
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
Found at i:44317913 original size:39 final size:39
Alignment explanation
Indices: 44317709--44317931 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
44317699 TTGAATGCTG
* * * * * *
44317709 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATACA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
44317749 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * * *
44317789 TTCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
44317829 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
44317869 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
44317908 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
44317932 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 38 0.25
40 104 0.68
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:44317951 original size:79 final size:80
Alignment explanation
Indices: 44317791--44317966 Score: 187
Period size: 79 Copynumber: 2.2 Consensus size: 80
44317781 ATACAAGTTT
* * * * *
44317791 CGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
* * *
44317856 GCGAGTTATTAAATC
66 ACGAGTGACTAAATC
* * * *
44317871 CGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGA
1 CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
*
44317935 ACGAG-GAGCTATATC
66 ACGAGTGA-CTAAATC
* *
44317950 C-GGTTAAATCCTGAAGG
1 CGGGTTAAGTCCCGAAGG
44317967 TACGTGATTT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.60
80 17 0.21
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
CGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAATC
Found at i:44326000 original size:27 final size:26
Alignment explanation
Indices: 44325970--44326223 Score: 256
Period size: 27 Copynumber: 9.4 Consensus size: 26
44325960 AATTATTGAT
* *
44325970 TACCCTCGATTAGCAAAATTACCAAAA
1 TACCC-CGATTTGTAAAATTACCAAAA
* * *
44325997 TACCCTCTATTAGCAAAATTACCAAAA
1 TACCC-CGATTTGTAAAATTACCAAAA
* *
44326024 TATCCCTAGTTTGTAAAATTACCAAAA
1 TACCCCGA-TTTGTAAAATTACCAAAA
* *
44326051 TACCCCTGGTTTGTAAAATTACAAAAA
1 TACCCC-GATTTGTAAAATTACCAAAA
* * *
44326078 TACCTCTAGTTTGTAAAATTACAAAAA
1 TACCCCGA-TTTGTAAAATTACCAAAA
*
44326105 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCC-GATTTGTAAAATTACCAAAA
* *
44326132 TACCCCTAGTTTGTAAGATTACCAAAA
1 TACCCCGA-TTTGTAAAATTACCAAAA
* *
44326159 TACCCCTGATTTGTGAAATTACTAAAA
1 TACCCC-GATTTGTAAAATTACCAAAA
* *
44326186 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCC-CGATTTGTAAAATTACCAAAA
44326213 TACCCCGATTT
1 TACCCCGATTT
44326224 ACAGAACTAC
Statistics
Matches: 193, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
26 8 0.04
27 183 0.95
28 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
TACCCCGATTTGTAAAATTACCAAAA
Found at i:44326051 original size:54 final size:53
Alignment explanation
Indices: 44325984--44326223 Score: 313
Period size: 54 Copynumber: 4.5 Consensus size: 53
44325974 CTCGATTAGC
* *
44325984 AAAATTACCAAAATACCCTCT-ATTAGCAAAATTACCAAAATATCCCTAGTTTGT
1 AAAATTACCAAAATACCC-CTGATTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* *
44326038 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAAATACCTCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACC-CTAGTTTGT
* *
44326092 AAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* * * * *
44326146 AAGATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTAG-TTTGT
*
44326200 AAAATTACCAAAGTACCCC-GATTT
1 AAAATTACCAAAATACCCCTGATTT
44326224 ACAGAACTAC
Statistics
Matches: 167, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
53 14 0.08
54 151 0.90
55 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:44326097 original size:81 final size:80
Alignment explanation
Indices: 44325984--44326218 Score: 294
Period size: 81 Copynumber: 2.9 Consensus size: 80
44325974 CTCGATTAGC
* * *
44325984 AAAATTACCAAAATACCCTCTA-TTAGCAAAATTACCAAAATATCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCTCTAGTTTGTAAAATTACAAAAATA-CCCTAGTTTGTAAAATTACCA
*
44326048 AAATACCCCTGGTTTGT
64 AAATACCCCTAGTTTGT
* *
44326065 AAAATTACAAAAATACCTCTAGTTTGTAAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCTCTAGTTTGTAAAATTACAAAAATA-CCCTAGTTTGTAAAATTACCAA
44326130 AATACCCCTAGTTTGT
65 AATACCCCTAGTTTGT
* * * * * *
44326146 AAGATTACCAAAATACCCCT-GATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTACCA
1 AAAATTACCAAAATACCTCTAG-TTTGTAAAATTACAAAAATACCCTAG-TTTGTAAAATTACCA
*
44326210 AAGTACCCC
64 AAATACCCC
44326219 GATTTACAGA
Statistics
Matches: 136, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
80 12 0.09
81 124 0.91
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCTCTAGTTTGTAAAATTACAAAAATACCCTAGTTTGTAAAATTACCAAA
ATACCCCTAGTTTGT
Found at i:44326285 original size:27 final size:27
Alignment explanation
Indices: 44326255--44326340 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 27
44326245 CGATTTACAA
44326255 AATTATTGAAATACCCCTTTAGGGTAG
1 AATTATTGAAATACCCCTTTAGGGTAG
*
44326282 AATTATTGAAATACCCTTTTAGGGTAG
1 AATTATTGAAATACCCCTTTAGGGTAG
* * * *
44326309 AAATATCGAAATACCCCTGTACGGTAG
1 AATTATTGAAATACCCCTTTAGGGTAG
44326336 AATTA
1 AATTA
44326341 CCGAGATACC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (27 bp):
AATTATTGAAATACCCCTTTAGGGTAG
Found at i:44326349 original size:27 final size:27
Alignment explanation
Indices: 44326255--44326351 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
44326245 CGATTTACAA
*
44326255 AATTATTGAAATACCCCTTTAGGGTAG
1 AATTATCGAAATACCCCTTTAGGGTAG
* *
44326282 AATTATTGAAATACCCTTTTAGGGTAG
1 AATTATCGAAATACCCCTTTAGGGTAG
* * *
44326309 AAATATCGAAATACCCCTGTACGGTAG
1 AATTATCGAAATACCCCTTTAGGGTAG
* *
44326336 AATTACCGAGATACCC
1 AATTATCGAAATACCC
44326352 TTATGGGGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (27 bp):
AATTATCGAAATACCCCTTTAGGGTAG
Found at i:44326361 original size:27 final size:27
Alignment explanation
Indices: 44326262--44326369 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 27
44326252 CAAAATTATT
**
44326262 GAAATACCCCTT-TAGGGTAGAATTATT
1 GAAATA-CCCTTATAGGGTAGAATTACC
* * *
44326289 GAAATACCCTTTTAGGGTAGAAATATC
1 GAAATACCCTTATAGGGTAGAATTACC
* * *
44326316 GAAATACCCCTGTACGGTAGAATTACC
1 GAAATACCCTTATAGGGTAGAATTACC
* * *
44326343 GAGATACCCTTATGGGGTAAAATTACC
1 GAAATACCCTTATAGGGTAGAATTACC
44326370 ATTTTGCCCC
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 5 0.07
27 62 0.93
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (27 bp):
GAAATACCCTTATAGGGTAGAATTACC
Found at i:44326361 original size:54 final size:53
Alignment explanation
Indices: 44326253--44326365 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
44326243 CTCGATTTAC
* * * ** *
44326253 AAAATTATTGAAATACCCCTTTAGGGTAGAATTATTGAAATACCCTTTTAGGGT
1 AAAA-TATCGAAATACCCCTGTACGGTAGAATTACCGAAATACCCTTATAGGGT
* *
44326307 AGAAATATCGAAATACCCCTGTACGGTAGAATTACCGAGATACCCTTATGGGGT
1 A-AAATATCGAAATACCCCTGTACGGTAGAATTACCGAAATACCCTTATAGGGT
44326361 AAAAT
1 AAAAT
44326366 TACCATTTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 4 0.08
54 43 0.86
55 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (53 bp):
AAAATATCGAAATACCCCTGTACGGTAGAATTACCGAAATACCCTTATAGGGT
Found at i:44327183 original size:26 final size:26
Alignment explanation
Indices: 44327105--44327184 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
44327095 TATTTTGTTA
* *
44327105 AGTGGCTTTGCCATATTATCTGTTTCT
1 AGTGGCTTTGCCACAATATCTG-TTCT
* *
44327132 GGTGGCTATGCCACAAATATCTGTTCT
1 AGTGGCTTTGCCAC-AATATCTGTTCT
44327159 AGTGGCTTTGCCACAATATCTGTTCT
1 AGTGGCTTTGCCACAATATCTGTTCT
44327185 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.26
27 27 0.59
28 7 0.15
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (26 bp):
AGTGGCTTTGCCACAATATCTGTTCT
Found at i:44327342 original size:6 final size:6
Alignment explanation
Indices: 44327305--44327485 Score: 86
Period size: 6 Copynumber: 29.3 Consensus size: 6
44327295 TTGCATTCAC
* * * * *
44327305 ATTCTG GTTCTG ATTC-G GTTACTTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
44327355 ATTCTG ATTCTT ATTCTT ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
44327404 ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTTTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
44327454 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
44327486 AATGCTTCTT
Statistics
Matches: 131, Mismatches: 27, Indels: 34
0.68 0.14 0.18
Matches are distributed among these distances:
5 9 0.07
6 103 0.79
7 13 0.10
8 6 0.05
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:44327361 original size:25 final size:25
Alignment explanation
Indices: 44327305--44327371 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
44327295 TTGCATTCAC
* * * * *
44327305 ATTCTGGTTCTGATTCGGTTACTTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
44327330 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
44327355 ATTCTGATTCTTATTCT
1 ATTCTGATTCTGATTCT
44327372 TATTCTAATT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:44327377 original size:37 final size:37
Alignment explanation
Indices: 44327336--44327408 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
44327326 CTTGATACTG
* * *
44327336 ATTCTGATTCTGTCACCTAATTCTGATTCTTATTCTT
1 ATTCTAATTCTGTCACCTAATACTGATTCTGATTCTT
* *
44327373 ATTCTAATTCTGTTACCTGATACTGATTCTGATTCT
1 ATTCTAATTCTGTCACCTAATACTGATTCTGATTCT
44327409 GTCACCTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (37 bp):
ATTCTAATTCTGTCACCTAATACTGATTCTGATTCTT
Found at i:44327402 original size:62 final size:62
Alignment explanation
Indices: 44327305--44327439 Score: 198
Period size: 62 Copynumber: 2.2 Consensus size: 62
44327295 TTGCATTCAC
* * * *
44327305 ATTCTGGTTCTGATTCGGTTACTTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTT
1 ATTCTGATTCTAATTCGGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTG
* * * *
44327367 ATTCTTATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTGATTTTGATTCTG
1 ATTCTGATTCTAATTCGGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTG
44327429 ATTCTGATTCT
1 ATTCTGATTCT
44327440 GTCACCTGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTAATTCGGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTG
Found at i:44327407 original size:25 final size:25
Alignment explanation
Indices: 44327373--44327464 Score: 94
Period size: 25 Copynumber: 3.4 Consensus size: 25
44327363 TCTTATTCTT
* *
44327373 ATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTGATACTG
44327398 ATTCTGATTCTGTCACCTGATTTTGATTCTG
1 ATTCTGATTCTGTCACCTGA---T-A--CTG
**
44327429 ATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGTCACCTGATACTG
44327454 ATTCTGATTCT
1 ATTCTGATTCT
44327465 CATTTTGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 31 0.54
28 2 0.04
29 1 0.02
31 23 0.40
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTGATACTG
Found at i:44327417 original size:19 final size:18
Alignment explanation
Indices: 44327333--44327459 Score: 64
Period size: 19 Copynumber: 6.8 Consensus size: 18
44327323 TTACTTGATA
44327333 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGT-AC
* *
44327352 CTAATTCTGATTCT-TATT
1 CTGATTCTGATTCTGTA-C
* *
44327370 CTTATTCTAATTCTGTTAC
1 CTGATTCTGATTCTG-TAC
* *
44327389 CTGATACTGATTCTG-ATT
1 CTGATTCTGATTCTGTA-C
* * *
44327407 CTG-TCACCTGATTTTG-ATT
1 CTGAT--TCTGATTCTGTA-C
44327426 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGT-AC
*
44327445 CTGATTTTGATTCTG
1 CTGATTCTGATTCTG
44327460 ATTCTCATTT
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
17 3 0.04
18 24 0.29
19 53 0.63
20 4 0.05
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.48
Consensus pattern (18 bp):
CTGATTCTGATTCTGTAC
Found at i:44327430 original size:31 final size:31
Alignment explanation
Indices: 44327327--44327464 Score: 147
Period size: 31 Copynumber: 4.5 Consensus size: 31
44327317 ATTCGGTTAC
* *
44327327 TTGATACTGATTCTGATTCTGTCACCTAATT
1 TTGATTCTGATTCTGATTCTGTCACCTGATT
* * * * *
44327358 CTGATTCTTATTCTTATTC--TAATTCTG-TT
1 TTGATTCTGATTCTGATTCTGTCA-CCTGATT
* *
44327387 ACCTGATACTGATTCTGATTCTGTCACCTGATT
1 --TTGATTCTGATTCTGATTCTGTCACCTGATT
44327420 TTGATTCTGATTCTGATTCTGTCACCTGATT
1 TTGATTCTGATTCTGATTCTGTCACCTGATT
44327451 TTGATTCTGATTCT
1 TTGATTCTGATTCT
44327465 CATTTTGATT
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
29 4 0.05
30 2 0.02
31 74 0.85
32 3 0.03
33 4 0.05
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.49
Consensus pattern (31 bp):
TTGATTCTGATTCTGATTCTGTCACCTGATT
Found at i:44329509 original size:68 final size:64
Alignment explanation
Indices: 44329362--44329546 Score: 214
Period size: 68 Copynumber: 2.8 Consensus size: 64
44329352 ATATAGTTCG
* *
44329362 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTACATTTATCTCGTA
*
44329425 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGTGACCTAGCTACATTATAATGTC
1 GCTCTCTTGTAC-ACATGGTGTACAC-TCAGTACCACCCATGTGACCTAGCTACATT-T-A--TC
*
44329488 TTGTA
60 TCGTA
* * * **
44329493 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACAT
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTACAT
44329547 ACTATCTGTA
Statistics
Matches: 103, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
62 1 0.01
63 44 0.43
64 4 0.04
65 1 0.01
66 1 0.01
67 1 0.01
68 50 0.49
69 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTACATTTATCTCGTA
Found at i:44330247 original size:30 final size:30
Alignment explanation
Indices: 44330213--44330273 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
44330203 TCTTTAACTC
44330213 AAACTTTGGA-AAAATTACAATTTTGCCCCT
1 AAACTTT-GACAAAATTACAATTTTGCCCCT
* * *
44330243 AAACTTTTACATAATTACACTTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
44330273 A
1 A
44330274 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (30 bp):
AAACTTTGACAAAATTACAATTTTGCCCCT
Found at i:44332963 original size:29 final size:29
Alignment explanation
Indices: 44332908--44333031 Score: 126
Period size: 29 Copynumber: 4.3 Consensus size: 29
44332898 GTGAGCATGA
* * *
44332908 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
44332936 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
** *
44332965 ATATTTAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
44332994 ATATGAATAT-AATTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
44333022 AGATACATGT
1 ATATAAATGT
44333032 ATGTGAATTT
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
28 33 0.42
29 46 0.58
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:44337600 original size:29 final size:29
Alignment explanation
Indices: 44337567--44337676 Score: 78
Period size: 31 Copynumber: 3.6 Consensus size: 29
44337557 ATATTTTAAA
44337567 AATTATGATTTTTTTTAAATTGGTCACCC
1 AATTATGATTTTTTTTAAATTGGTCACCC
** **
44337596 AATTATGGATTTGTTTCTTTTA-TGGTTTCCC
1 AATTAT-GATTT-TTT-TTAAATTGGTCACCC
* ** *
44337627 AACTATGAACTTTTTTAAATTGGTCATCC
1 AATTATGATTTTTTTTAAATTGGTCACCC
*
44337656 AACTAATTGAGTTTTTTTTAA
1 AA-TTA-TGA-TTTTTTTTAA
44337677 TCCATTTTCG
Statistics
Matches: 58, Mismatches: 16, Indels: 11
0.68 0.19 0.13
Matches are distributed among these distances:
28 3 0.05
29 17 0.29
30 9 0.16
31 18 0.31
32 11 0.19
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.49
Consensus pattern (29 bp):
AATTATGATTTTTTTTAAATTGGTCACCC
Found at i:44339273 original size:46 final size:47
Alignment explanation
Indices: 44339217--44339345 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 47
44339207 ACATCTCGTA
*
44339217 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTTA-T-GTCTCGAG
1 GCTGATGCATGTCCCAAACATGTCTTACACTGGC-TACTCGTCTCAAG
* * *
44339263 GCTGAAGCATGTCCCAAACATGTCTTACACTAGC-ACTCGTCTCAAT
1 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTACTCGTCTCAAG
* *
44339309 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GCTGATG-CATGTCCCAAACAT-GTCTTACACTGGCT
44339346 CTCAAAATGT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 43 0.61
47 13 0.19
48 12 0.17
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTGGCTACTCGTCTCAAG
Found at i:44339368 original size:47 final size:46
Alignment explanation
Indices: 44339317--44339438 Score: 183
Period size: 47 Copynumber: 2.7 Consensus size: 46
44339307 ATGCCGATGC
44339317 CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGTGGCTAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGT-GCTAATG
* * *
44339364 CATGTCCTAAACATGGTCTTACACTGGCTCTCAAAATGTGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGTGCTAATG
* *
44339410 TATGTCCCAGACAT-GTCATACACTGGCTC
1 CATGTCCCAGACATGGTCTTACACTGGCTC
44339439 ACACAAGTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 14 0.21
46 17 0.25
47 37 0.54
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGTGCTAATG
Found at i:44343959 original size:19 final size:20
Alignment explanation
Indices: 44343935--44343972 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
44343925 GGTACCACCA
44343935 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
44343954 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
44343973 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:44344733 original size:30 final size:30
Alignment explanation
Indices: 44344699--44344758 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
44344689 ATTTAATACG
44344699 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
44344729 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
44344759 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:44351445 original size:19 final size:20
Alignment explanation
Indices: 44351421--44351458 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
44351411 GGTACCACCA
44351421 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
44351440 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
44351459 ACCCTTATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:44360913 original size:47 final size:46
Alignment explanation
Indices: 44360802--44361023 Score: 179
Period size: 47 Copynumber: 4.8 Consensus size: 46
44360792 GTTATTGTGG
* * * *
44360802 GCTAGTGTAAGACATGTTTAGGACATGCATCGGCCA-C-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GATGATA
* *
44360848 GCCTA-TATAAGACAATGTCTGGGACATGGCATCGGCATCGAGACGAGT-
1 G-CTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATCGAGATGA-TA
* * *
44360896 GCTAGTGTATGACATGTCTGGGACATGCA-CGGCCTCGAGATGTTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGATA
* * * *
44360941 GCCAGTGTAAGATATGTCTGGGACATGCATCGAC-TACGAAATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGATGATA
*
44360987 G-TCAGTGTAAGACCATGTCTGGGATATGGCATCGGCA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
44361024 CCCTACCCCA
Statistics
Matches: 141, Mismatches: 21, Indels: 25
0.75 0.11 0.13
Matches are distributed among these distances:
44 1 0.01
45 38 0.27
46 32 0.23
47 44 0.31
48 25 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGATA
Found at i:44360949 original size:45 final size:46
Alignment explanation
Indices: 44360805--44361022 Score: 185
Period size: 45 Copynumber: 4.7 Consensus size: 46
44360795 ATTGTGGGCT
* * * * *
44360805 AGTGTAAGACATGTTTAGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGATAGCC
* * * *
44360851 TA-TATAAGACAATGTCTGGGACATGGCATCGGCATCGAGACGAGT-GCT
1 -AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGA-TAGCC
* *
44360899 AGTGTATGACATGTCTGGGACATGCA-CGGCCTCGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCC
* * * *
44360944 AGTGTAAGATATGTCTGGGACATGCATC-GACTACGAAATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATAGCC
*
44360990 AGTGTAAGACCATGTCTGGGATATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
44361023 ACCCTACCCC
Statistics
Matches: 136, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
45 40 0.29
46 30 0.22
47 38 0.28
48 25 0.18
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCC
Found at i:44375718 original size:56 final size:56
Alignment explanation
Indices: 44375642--44375753 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
44375632 CACCCGCTAT
44375642 GTGCCTCATCTAAAATCTTCTAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
1 GTGCCTCATCTAAAATCTTCTAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
44375698 GTGCCTCATCTAAAATCTTCTAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
1 GTGCCTCATCTAAAATCTTCTAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
44375754 TCTTTGAACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (56 bp):
GTGCCTCATCTAAAATCTTCTAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
Found at i:44381204 original size:55 final size:53
Alignment explanation
Indices: 44381049--44381255 Score: 171
Period size: 53 Copynumber: 3.8 Consensus size: 53
44381039 TTCCTTTTTA
* * *
44381049 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * * *
44381102 AACTCACCATTCCCACGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * * *
44381156 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* ** * * *
44381211 AACTTACCAATTTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
44381256 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 39 0.33
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:44381373 original size:13 final size:13
Alignment explanation
Indices: 44381355--44381395 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
44381345 AATCATCAAG
44381355 GAATAAATTTATA
1 GAATAAATTTATA
*
44381368 GAATAAATTTACA
1 GAATAAATTTATA
* *
44381381 AAATAAATATATA
1 GAATAAATTTATA
44381394 GA
1 GA
44381396 TGCTAAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (13 bp):
GAATAAATTTATA
Found at i:44390975 original size:46 final size:46
Alignment explanation
Indices: 44390888--44391013 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
44390878 ACATCAAATA
* *
44390888 GCCGATGCATGTCCCAGACATGTCTTACACTGACTTACGTCTCGA-
1 GCCGATGCATGTCCTAGACATGTCTTACACTGACTTACGTCTCAAT
44390933 GACCGATGCATGTCCTAGACATGTCTTACACTAGCAC-T-CGTCTCAAT
1 G-CCGATGCATGTCCTAGACATGTCTTACACT-G-ACTTACGTCTCAAT
* *
44390980 GCCAATTCCATGTCCTAGACATGGTCTTACACTG
1 GCCGA-TGCATGTCCTAGACAT-GTCTTACACTG
44391014 GCTCTCAAAA
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
45 1 0.01
46 39 0.55
47 19 0.27
48 12 0.17
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGACTTACGTCTCAAT
Found at i:44396370 original size:48 final size:48
Alignment explanation
Indices: 44396273--44396390 Score: 137
Period size: 48 Copynumber: 2.5 Consensus size: 48
44396263 ACCACGATTA
* * *
44396273 ATGAGAGCCAGTGTAAGACCATGCCTGGGACATGACATTAGCGTTGAT
1 ATGAGAGCCAGTGTAAGACCATGCCTGGGACATGACATCAGCATGGAT
* * * *
44396321 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGAT
1 ATGAGAGCCAGTGTAAGACCATGCCTGGGACATGACATCAGCATGGAT
* * * *
44396369 ATGTGTGTCATTGTAAGACCAT
1 ATGAGAGCCAGTGTAAGACCAT
44396391 ATCGGGATAT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGCCTGGGACATGACATCAGCATGGAT
Found at i:44397715 original size:29 final size:28
Alignment explanation
Indices: 44397657--44397742 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 28
44397647 TACCTGTATC
* *
44397657 TGGCCCATTAAGCCCAATCATATTCT-TA
1 TGGCCCATTAGGCCCAATCACATT-TATA
44397685 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
* * * *
44397714 TGACCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
44397742 T
1 T
44397743 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:44397980 original size:16 final size:16
Alignment explanation
Indices: 44397959--44397989 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
44397949 AAACTTTTGG
44397959 CTTTTCGGCATTTCAA
1 CTTTTCGGCATTTCAA
*
44397975 CTTTTCGGCTTTTCA
1 CTTTTCGGCATTTCA
44397990 GCATTTCGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (16 bp):
CTTTTCGGCATTTCAA
Found at i:44397987 original size:24 final size:23
Alignment explanation
Indices: 44397950--44398004 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
44397940 ACCGTAGCCA
*
44397950 AACTTTTGGCTTTTCGGCATTTC
1 AACTTTTGGCTTTTCAGCATTTC
44397973 AACTTTTCGGCTTTTCAGCATTTC
1 AACTTTT-GGCTTTTCAGCATTTC
*
44397997 GACTTTTG
1 AACTTTTG
44398005 CTGATACATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 8 0.28
24 21 0.72
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (23 bp):
AACTTTTGGCTTTTCAGCATTTC
Found at i:44397996 original size:16 final size:16
Alignment explanation
Indices: 44397961--44398003 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
44397951 ACTTTTGGCT
* *
44397961 TTTCGGCATTTCAACT
1 TTTCGGCTTTTCAACA
*
44397977 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAACA
*
44397993 TTTCGACTTTT
1 TTTCGGCTTTT
44398004 GCTGATACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAACA
Found at i:44401524 original size:23 final size:23
Alignment explanation
Indices: 44401490--44401534 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
44401480 CCCAAATATG
44401490 AAAACACATATA-TTTCATTTAC
1 AAAACACATATACTTTCATTTAC
*
44401512 AAAATCACCTATACTTTTCATTT
1 AAAA-CACATATAC-TTTCATTT
44401535 GGCCAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 7 0.37
25 8 0.42
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAACACATATACTTTCATTTAC
Found at i:44401944 original size:41 final size:41
Alignment explanation
Indices: 44401887--44402065 Score: 254
Period size: 41 Copynumber: 4.3 Consensus size: 41
44401877 ACATAAAATT
* *
44401887 TGCTAGGC-ATAAAGCCT-AGTATAATACACTGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
44401928 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
* *
44401971 TGCTAGGCAATAAGCCTGATATAATACGCCAGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
44402012 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
44402053 TGCAAGGCAATAA
1 TGCTAGGCAATAA
44402066 ACCCCGAATA
Statistics
Matches: 125, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
41 85 0.68
42 3 0.02
43 37 0.30
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:44402020 original size:84 final size:82
Alignment explanation
Indices: 44401887--44402065 Score: 254
Period size: 84 Copynumber: 2.2 Consensus size: 82
44401877 ACATAAAATT
** *
44401887 TGCTAGGC-ATAAAGCCTAGTATAATACACTGGCACAGAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAAT-AAGCCTAGTATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
*
44401951 ATACACCGGCATATAAAGCC
65 ATACACCGGC--ACAAAGCC
*
44401971 TGCTAGGCAATAAGCCT-GATATAATACGCCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAATAAGCCTAG-TATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
44402035 ATACACCGGCACAAAGCC
65 ATACACCGGCACAAAGCC
*
44402053 TGCAAGGCAATAA
1 TGCTAGGCAATAA
44402066 ACCCCGAATA
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
82 19 0.22
83 1 0.01
84 65 0.75
85 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (82 bp):
TGCTAGGCAATAAGCCTAGTATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACCGGCACAAAGCC
Found at i:44402764 original size:25 final size:25
Alignment explanation
Indices: 44402710--44402764 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
44402700 AACATCAAAG
*
44402710 ATTTATTATTCATCATCAAACAACA
1 ATTTCTTATTCATCATCAAACAACA
44402735 ATTTCTTATTCATCATCAAACAACA
1 ATTTCTTATTCATCATCAAACAACA
44402760 ATTTC
1 ATTTC
44402765 ATCACATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.00, T:0.38
Consensus pattern (25 bp):
ATTTCTTATTCATCATCAAACAACA
Found at i:44403998 original size:392 final size:392
Alignment explanation
Indices: 44402735--44404110 Score: 2709
Period size: 392 Copynumber: 3.5 Consensus size: 392
44402725 TCAAACAACA
*
44402735 ATTTCTTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
1 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
44402800 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
66 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
44402865 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
131 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
44402930 CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
196 CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
*
44402995 AGGTCTTTAGCAACCCATTTCTTTTATTTATTTCATGTTTTGACCCCTCGATTTACAAATTTCTA
261 AGGTCTTTAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTA
44403060 AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
326 AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
44403125 AG
391 AG
44403127 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
1 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
*
44403192 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACAATCTCAAAAACGTAAA
66 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
44403257 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
131 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
44403322 CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
196 CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
44403387 AGGTCTTTAGCAACCCATTT-TTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTA
261 AGGTCTTTAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTA
44403451 AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
326 AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
44403516 AG
391 AG
44403518 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
1 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
*
44403583 CATTAAATCCAAAAGTTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
66 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
44403648 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
131 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
44403713 CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
196 CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
44403778 AGGTCTTTAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTA
261 AGGTCTTTAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTA
44403843 AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
326 AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
44403908 AG
391 AG
44403910 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
1 ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
44403975 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
66 CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
44404040 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
131 AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
44404105 CTTCCA
196 CTTCCA
44404111 AACTCATCTT
Statistics
Matches: 977, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
391 388 0.40
392 589 0.60
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (392 bp):
ATTTATTATTCATCATCAAACAACAATTTCATCACATAATAAACAATGGAAAATCTCAAATTCTT
CATTAAATCCAAAAATTAAGGCATGGGTTTACTAGTACTCGAAGCAACGATCTCAAAAACGTAAA
AATTATCAAAAACCGAGTAAAACACATACCCGAATTAAGCTTCCAAAGGTGCCAAATATTCAAAG
CTTCCATCAAAATAACACAAATTACTCAAAATTTCATCAAACCCATGTTAGGCCGAATTTATCTT
AGGTCTTTAGCAACCCATTTCTTTTATTTATTTCACGTTTTGACCCCTCGATTTACAAATTTCTA
AATTTAGTCCTTAATACACATTTTTATCAAAAATCACTTAATTAAACATGAAAATCAAACATCAA
AG
Found at i:44407458 original size:93 final size:93
Alignment explanation
Indices: 44407299--44407470 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
44407289 GCCCATAACT
* * *
44407299 GAACTCAGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATGAGTGAACCCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
44407364 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
44407392 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
44407457 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
44407471 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:44407459 original size:46 final size:46
Alignment explanation
Indices: 44407291--44407466 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
44407281 TGTAACCCGC
* * * * * *
44407291 CCATAACTGAACTCAGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
44407337 CCATGAGTGAACCCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
44407387 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
44407430 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
44407467 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44409931 original size:46 final size:48
Alignment explanation
Indices: 44409790--44409955 Score: 176
Period size: 48 Copynumber: 3.5 Consensus size: 48
44409780 TCCTAGATAG
* ** * *
44409790 GTCTTACACTAGCTTATCTATCTCGAGGCCAATCCATGTCCCAGACAT
1 GTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACAT
* *
44409838 GTCTTACATTGGCTTAAATATCTCGAGGCCGATGTATGTCCCAGACAT
1 GTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACAT
* * *
44409886 ATCTTACACTGGCTCT-CATAT-T-GTGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGCT-TAAATATCTCGAGGCCGATGCATGTCCCAGACAT
* * * *
44409932 GCCTTACACTAGCATACATATCTC
1 GTCTTACACTGGCTTAAATATCTC
44409956 CCAATATCAA
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 37 0.38
47 2 0.02
48 57 0.58
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
GTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACAT
Found at i:44423042 original size:43 final size:46
Alignment explanation
Indices: 44422975--44423090 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 46
44422965 CTTGAGGTCG
*
44422975 ATGCATGTCCCAAACATGTT-TTACACTGGCT-T-A-ATCGA-GGCCA
1 ATGCATGTCCCAGACAT-TTCTTACACTGGCTCTCATATC-ATGGCCA
**
44423018 ATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATCATGGCTG
1 ATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATCATGGCCA
*
44423064 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATTTCTTACACT
44423091 AGCACACATA
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
42 2 0.03
43 27 0.42
44 1 0.02
45 2 0.03
46 32 0.50
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATCATGGCCA
Found at i:44423074 original size:46 final size:43
Alignment explanation
Indices: 44422968--44423090 Score: 142
Period size: 43 Copynumber: 2.8 Consensus size: 43
44422958 GTTCTATCTT
* *
44422968 GAGGTCGATGCATGTCCCAAACATGTT-TTACACTGGCTTAATC
1 GAGGCCGATGCATGTCCCAGACAT-TTCTTACACTGGCTTAATC
*
44423011 GAGGCCAATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATC
1 GAGGCCGATGCATGTCCCAGACATTTCTTACACTGGCT-T-A-ATC
* *
44423057 -ATGGCTGATGCATGTCCCAGACATGTCTTACACT
1 GA-GGCCGATGCATGTCCCAGACATTTCTTACACT
44423091 AGCACACATA
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
42 2 0.03
43 32 0.46
44 1 0.01
45 2 0.03
46 32 0.46
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (43 bp):
GAGGCCGATGCATGTCCCAGACATTTCTTACACTGGCTTAATC
Found at i:44424542 original size:10 final size:10
Alignment explanation
Indices: 44424527--44424573 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
44424517 GCTTATAATC
44424527 CATACCAAAT
1 CATACCAAAT
44424537 CATACCAAAT
1 CATACCAAAT
44424547 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
*
44424560 CATACCAAAA
1 CATACCAAAT
44424570 CATA
1 CATA
44424574 TGTTTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.52
11 6 0.18
12 6 0.18
13 4 0.12
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:44424563 original size:23 final size:22
Alignment explanation
Indices: 44424531--44424573 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
44424521 ATAATCCATA
*
44424531 CCAAATCATACCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
44424553 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
44424574 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:44427675 original size:25 final size:27
Alignment explanation
Indices: 44427638--44427690 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
44427628 TCAAACATGC
44427638 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
44427664 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
44427690 A
1 A
44427691 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:44439496 original size:8 final size:7
Alignment explanation
Indices: 44439468--44439494 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
44439458 ATGTAATATT
44439468 TTTTTTA
1 TTTTTTA
44439475 TTTTTTA
1 TTTTTTA
44439482 TTTTTTA
1 TTTTTTA
44439489 TTTTTT
1 TTTTTT
44439495 TAAGAACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:44448907 original size:22 final size:22
Alignment explanation
Indices: 44448879--44448932 Score: 81
Period size: 24 Copynumber: 2.4 Consensus size: 22
44448869 TGTTACTGGA
44448879 AGCTTACTGTTCAGCTCAATAG
1 AGCTTACTGTTCAGCTCAATAG
*
44448901 AGCTTACCGTTTTCAGCTCAATAG
1 AGCTTA-C-TGTTCAGCTCAATAG
44448925 AGCTTACT
1 AGCTTACT
44448933 ATTTATCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 7 0.24
23 2 0.07
24 20 0.69
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (22 bp):
AGCTTACTGTTCAGCTCAATAG
Found at i:44456512 original size:41 final size:41
Alignment explanation
Indices: 44456455--44456604 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
44456445 TCGGGGTTTA
44456455 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
44456496 AATCCGATCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * *
44456537 AA-CCGAACCTAGTTTTGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
44456577 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
44456605 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:44464711 original size:12 final size:12
Alignment explanation
Indices: 44464675--44464734 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
44464665 AATTCCGCAT
*
44464675 ACATAGTGCCAT
1 ACATAGTGCCAC
*
44464687 ACATA-TACGCAC
1 ACATAGTGC-CAC
44464699 ACATAGTGCCAC
1 ACATAGTGCCAC
* *
44464711 ACA-AATACGCAC
1 ACATAGTGC-CAC
44464723 ACATAGTGCCAC
1 ACATAGTGCCAC
44464735 TCAAATCCGC
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
11 5 0.14
12 27 0.73
13 5 0.14
ACGTcount: A:0.38, C:0.32, G:0.13, T:0.17
Consensus pattern (12 bp):
ACATAGTGCCAC
Found at i:44464753 original size:24 final size:24
Alignment explanation
Indices: 44464646--44464745 Score: 119
Period size: 24 Copynumber: 4.2 Consensus size: 24
44464636 GATTCAACTC
* * * *
44464646 CGCACACATAGTGCCAAATAATTC
1 CGCACACATAGTGCCACACAAATA
* * *
44464670 CGCATACATAGTGCCATACATATA
1 CGCACACATAGTGCCACACAAATA
44464694 CGCACACATAGTGCCACACAAATA
1 CGCACACATAGTGCCACACAAATA
* *
44464718 CGCACACATAGTGCCACTCAAATC
1 CGCACACATAGTGCCACACAAATA
44464742 CGCA
1 CGCA
44464746 TATCTAGTAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (24 bp):
CGCACACATAGTGCCACACAAATA
Found at i:44492040 original size:29 final size:29
Alignment explanation
Indices: 44492006--44492079 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
44491996 TAATCAACCA
* *
44492006 CGCACACTTAGTGCCATGTACTTT-ACA-CT
1 CGCACACTTAGTGCCATGCA-TTTCA-AGCC
44492035 CGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAGCC
44492064 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
44492080 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 37 0.90
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCC
Found at i:44494482 original size:43 final size:43
Alignment explanation
Indices: 44494431--44494516 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
44494421 GAGATATGTC
44494431 GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
* *
44494474 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTGTGGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
44494517 TACCTATGAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGGTCCGAATTCATTATGGATGCGA
Found at i:44507413 original size:46 final size:46
Alignment explanation
Indices: 44507346--44507521 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
44507336 TGTAACCCGC
* *
44507346 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTAGTAT
* *
44507392 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTAGTAT
* *** * * *
44507438 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTAGTAT
*
44507485 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
44507522 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.02
46 71 0.65
47 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTAGTAT
Found at i:44507461 original size:93 final size:93
Alignment explanation
Indices: 44507354--44507525 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
44507344 GCCCATAAGT
* * *
44507354 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
44507418 ATGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
44507447 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
44507512 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
44507526 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:44513614 original size:22 final size:22
Alignment explanation
Indices: 44513588--44513632 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
44513578 TTACAACAGC
44513588 ATATTTTGTCAAACCAAATCAT
1 ATATTTTGTCAAACCAAATCAT
44513610 ATATTTTGTCAAACCAAATCAT
1 ATATTTTGTCAAACCAAATCAT
44513632 A
1 A
44513633 CCAACTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (22 bp):
ATATTTTGTCAAACCAAATCAT
Found at i:44516009 original size:40 final size:40
Alignment explanation
Indices: 44515954--44516177 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
44515944 TATTCGGATG
*
44515954 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
44515994 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
44516037 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
44516077 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
44516117 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
44516157 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
44516178 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 113 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:44516100 original size:83 final size:80
Alignment explanation
Indices: 44515961--44516177 Score: 296
Period size: 83 Copynumber: 2.7 Consensus size: 80
44515951 ATGATATCCA
* **
44515961 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
44516026 GAGTAGTTG-CTATACCCG
66 ---TAG-TGACTATACCCG
*
44516044 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
*
44516109 TAGTGACTATATCCG
66 TAGTGACTATACCCG
* * *
44516124 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
44516178 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.36
81 2 0.02
83 61 0.49
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
TAGTGACTATACCCG
Found at i:44524204 original size:40 final size:40
Alignment explanation
Indices: 44524149--44524372 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
44524139 TATTCGGATG
*
44524149 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
44524189 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
44524232 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
44524272 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
44524312 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
44524352 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
44524373 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:44524295 original size:83 final size:80
Alignment explanation
Indices: 44524156--44524372 Score: 287
Period size: 83 Copynumber: 2.7 Consensus size: 80
44524146 ATGATATCCA
* **
44524156 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
44524221 GAGTAGTTG-CTATACCCG
66 ---TAG-TGACTATACCCG
*
44524239 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
*
44524304 TAGTGACTATATCCG
66 TAGTGACTATACCCG
* * * *
44524319 GGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
44524373 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.36
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
TAGTGACTATACCCG
Found at i:44529192 original size:43 final size:42
Alignment explanation
Indices: 44529126--44529283 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
44529116 AGCTCATACA
44529126 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACATGTAATCAAATAT-G
* *
44529169 ATGCC-ACTGTCCCAGACAGGGTCTTACATGAAATAAAATA-G
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAATCAAATATG
* * * *
44529210 ATGCTAATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGT-AATCA-AA-TATG
*
44529254 ATGCCAACGTCCCAGACATGGTCTTACATG
1 ATGCCAACGTCCCAGACAGGGTCTTACATG
44529284 AGAACACATA
Statistics
Matches: 97, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 25 0.26
42 7 0.07
43 35 0.36
44 30 0.31
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAAATATG
Done.