Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 135 of 311
Found at i:45731554 original size:28 final size:28
Alignment explanation
Indices: 45731495--45731558 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
45731485 CTATGTACGC
* **
45731495 CACTTAGTGCGTGAAATATCGAGTGTGG
1 CACTTAGTGCGTGAAATATCGACTGTAA
* * *
45731523 CACTTAGTGTGTGAGATATTGACTGTAA
1 CACTTAGTGCGTGAAATATCGACTGTAA
45731551 CACTTAGT
1 CACTTAGT
45731559 TTGCGAGGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (28 bp):
CACTTAGTGCGTGAAATATCGACTGTAA
Found at i:45738810 original size:40 final size:40
Alignment explanation
Indices: 45738751--45738826 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
45738741 CAGCTATTTG
* * *
45738751 TGGCACTTAGTGTGCGATTTGACATAGCTTCGGCTACATA
1 TGGCACTTAGCGTGCGATTTGACATAGATTCAGCTACATA
* *
45738791 TGGCACTTAGCGTGGGATTTGAGATAGATTCAGCTA
1 TGGCACTTAGCGTGCGATTTGACATAGATTCAGCTA
45738827 TGTACGACAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGCGTGCGATTTGACATAGATTCAGCTACATA
Found at i:45739806 original size:27 final size:27
Alignment explanation
Indices: 45739736--45739806 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
45739726 CTCGACCTGT
*
45739736 AAAATTA-CCAAAGTACCCTTGATTTAC
1 AAAATTATCGAAA-TACCCTTGATTTAC
***
45739763 AAAATTATCGTTTTACCCTTGATTTAC
1 AAAATTATCGAAATACCCTTGATTTAC
*
45739790 AAAATTATTGAAATACC
1 AAAATTATCGAAATACC
45739807 TCTGTAGGGT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.35
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTTGATTTAC
Found at i:45739820 original size:27 final size:27
Alignment explanation
Indices: 45739790--45739931 Score: 185
Period size: 27 Copynumber: 5.3 Consensus size: 27
45739780 CTTGATTTAC
*
45739790 AAAATTATTGAAATACCTCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
*
45739817 AAAATTATTGAATTACCCCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
*
45739844 AGAATTATTGAAATACCCCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
* **
45739871 AAAAATACCGAAATACCCCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
* * * * *
45739898 AGAATTACTGAGATACCCTTGTGGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
45739925 AAAATTA
1 AAAATTA
45739932 CCATTTTGCC
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (27 bp):
AAAATTATTGAAATACCCCTGTAGGGT
Found at i:45740802 original size:25 final size:25
Alignment explanation
Indices: 45740774--45740834 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
45740764 CACATTCTGG
* *
45740774 TTCTGATTCTGTTACCTGATACTAA
1 TTCTGATTCTGTCACCTAATACTAA
* * *
45740799 TTCTGTTTCTGTCACCTAATTCTGA
1 TTCTGATTCTGTCACCTAATACTAA
45740824 TTCTGATTCTG
1 TTCTGATTCTG
45740835 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.48
Consensus pattern (25 bp):
TTCTGATTCTGTCACCTAATACTAA
Found at i:45740817 original size:19 final size:19
Alignment explanation
Indices: 45740795--45740865 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
45740785 TTACCTGATA
*
45740795 CTAATTCTGTTTCTGTCAC
1 CTAATTCTGATTCTGTCAC
*
45740814 CTAATTCTGATTCTG--ATT
1 CTAATTCTGATTCTGTCA-C
*
45740832 CTGATTCTGATTCTGTCAC
1 CTAATTCTGATTCTGTCAC
45740851 CTAATTCTGATTCTG
1 CTAATTCTGATTCTG
45740866 ATTCTCATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.02
18 14 0.32
19 28 0.64
20 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.13, T:0.46
Consensus pattern (19 bp):
CTAATTCTGATTCTGTCAC
Found at i:45740826 original size:6 final size:6
Alignment explanation
Indices: 45740817--45740882 Score: 71
Period size: 6 Copynumber: 10.8 Consensus size: 6
45740807 CTGTCACCTA
* *
45740817 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
45740866 ATTCTC ATTATG ATTCT
1 ATTCTG ATTCTG ATTCT
45740883 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
5 1 0.02
6 45 0.92
7 2 0.04
8 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:45740830 original size:37 final size:37
Alignment explanation
Indices: 45740789--45740882 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
45740779 ATTCTGTTAC
*
45740789 CTGATACTAATTCTGTTTCTGTCACCTAATTCTGATT
1 CTGATACTAATTCTGATTCTGTCACCTAATTCTGATT
* *
45740826 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATACTAATTCTGATTCTGTCACCTAATTCTGATT
* * *
45740863 CTGATTCTCATTATGATTCT
1 CTGATACTAATTCTGATTCT
45740883 AGTTTTGATA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (37 bp):
CTGATACTAATTCTGATTCTGTCACCTAATTCTGATT
Found at i:45742372 original size:40 final size:40
Alignment explanation
Indices: 45742289--45742504 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
45742279 CAACCAAGTA
** *
45742289 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
45742327 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45742367 CCTTCGGGACTTAGCCCAGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
45742407 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
45742447 CCTTCGGGGCTT-GCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
45742486 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45742505 TTATCATCCA
Statistics
Matches: 157, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 16 0.10
39 44 0.28
40 94 0.60
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45742499 original size:119 final size:118
Alignment explanation
Indices: 45742289--45742502 Score: 290
Period size: 119 Copynumber: 1.8 Consensus size: 118
45742279 CAACCAAGTA
** * **
45742289 CCTTCGGGGTTTAGCCGGATATAGCTACTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 CCTTCGGGACTTAGCCGGATATAGCTACTGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
45742354 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTACTTCGCACAAATG
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTACTTCGCACAAATG
*
45742407 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGGCTT-GCCC-GAAACT
1 CCTTCGGGACTTAG-CCGGATATAGCT-ACT-GCACAAATGCCTTCGGGACTTAGCCCGGAAA-T
* *
45742469 AGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
62 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
45742503 GGTTATCATC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 15 0.18
119 49 0.59
120 19 0.23
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
ACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTACTTCGCACAAATG
Found at i:45748269 original size:42 final size:42
Alignment explanation
Indices: 45748157--45748294 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 42
45748147 AGGATTTCGA
** *
45748157 TATATGATTTTGTGTAAGACCAC-GTCTGGGATTTTGGCATCG
1 TATATGATTTTGTGTAAGACC-CTGTCTGGGACATTGGAATCG
* * *
45748199 -ATTTGAGATTTATGTGTAAGACCATGTCTGGGACATTGGAATTG
1 TATAT--GATTT-TGTGTAAGACCCTGTCTGGGACATTGGAATCG
* *
45748243 TATATGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TATATGATTTTGTGTAAGACCCTGTCTGGGACATTGGAATCG
*
45748285 ATATTTGATT
1 -TATATGATT
45748295 ACATGTAAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
41 3 0.04
42 28 0.36
43 18 0.23
44 26 0.33
45 3 0.04
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (42 bp):
TATATGATTTTGTGTAAGACCCTGTCTGGGACATTGGAATCG
Found at i:45748305 original size:43 final size:42
Alignment explanation
Indices: 45748213--45748306 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
45748203 GAGATTTATG
* * ***
45748213 TGTAAGACCATGTCTGGGACATTGGAATTGTATATGATTTTG
1 TGTAAGACCATGTCTGGGACAGTGGAATCGTATATGATTACA
* * *
45748255 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGAATCG-TATATGATTACA
45748298 TGTAAGACC
1 TGTAAGACC
45748307 TCGTTTGGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 26 0.60
43 17 0.40
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTGGAATCGTATATGATTACA
Found at i:45757824 original size:42 final size:42
Alignment explanation
Indices: 45757727--45757825 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 42
45757717 AGGGTAGGAC
* *
45757727 AGACACAGCCGTGTGAAAGTCTCACATACCCATGTGCCCATG
1 AGACACAGCTGTGTGAAAGTCTCACATACCCATGTGCCCACG
** * * *
45757769 AGACGTAGTTGTGTGAAAGTCTCACATGCCCGTGTGCCCACG
1 AGACACAGCTGTGTGAAAGTCTCACATACCCATGTGCCCACG
*
45757811 GGACACAGCTGTGTG
1 AGACACAGCTGTGTG
45757826 TCTAGAGACA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (42 bp):
AGACACAGCTGTGTGAAAGTCTCACATACCCATGTGCCCACG
Found at i:45758614 original size:13 final size:13
Alignment explanation
Indices: 45758596--45758620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45758586 ATAAATAAAT
45758596 AAATAATAACTAA
1 AAATAATAACTAA
45758609 AAATAATAACTA
1 AAATAATAACTA
45758621 TTTAAGACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAATAACTAA
Found at i:45766978 original size:39 final size:39
Alignment explanation
Indices: 45766832--45767014 Score: 201
Period size: 39 Copynumber: 4.6 Consensus size: 39
45766822 TCGAATGATG
* * * *
45766832 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45766872 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
45766911 TTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
45766950 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45766990 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
45767015 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 22 0.18
39 54 0.45
40 37 0.31
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45767044 original size:79 final size:77
Alignment explanation
Indices: 45766879--45767047 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 77
45766869 ATATCCGGAC
** **
45766879 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTT
45766944 ACTAAATCCGGGT
65 ACTAAATCCGGGT
* * *
45766957 TAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-
1 TAAGTCCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTGGAACGAGT
*
45767021 TAGCTATATCC-GGT
64 TA-CTAAATCCGGGT
*
45767035 TAAATTCCGAAGG
1 T-AAGTCCGAAGG
45767048 TACGTGATTC
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 25 0.32
78 19 0.24
79 34 0.44
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (77 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTA
CTAAATCCGGGT
Found at i:45776558 original size:39 final size:40
Alignment explanation
Indices: 45776457--45776648 Score: 196
Period size: 40 Copynumber: 4.8 Consensus size: 40
45776447 TCGAATGATG
* * * *
45776457 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* *
45776496 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* *
45776537 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
45776576 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
45776615 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
45776649 AGCTATATCC
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
39 35 0.27
40 85 0.66
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:45776593 original size:79 final size:81
Alignment explanation
Indices: 45776457--45776641 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
45776447 TCGAATGATG
*
45776457 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45776521 TGTACGAGATACTA-A
66 TGTACGAGATACTATA
* * * **
45776536 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
45776598 TTTGTGCGAGTTACTATA
64 TTTGTACGAGATACTATA
* *
45776616 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45776642 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGATACTATA
Found at i:45776663 original size:79 final size:79
Alignment explanation
Indices: 45776510--45776674 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
45776500 GGACTAAGAT
* **
45776510 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
45776575 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
45776589 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
45776652 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45776668 CCGAAGG
1 CCGAAGG
45776675 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45777091 original size:47 final size:47
Alignment explanation
Indices: 45776866--45777224 Score: 569
Period size: 47 Copynumber: 7.6 Consensus size: 47
45776856 AAGGGTTGGT
*
45776866 AATGTAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45776913 AATGTGAAAGTGTATATATATCTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
45776962 AATGTGAAAGTGTAT-TATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45777008 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45777057 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45777104 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
45777151 AATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
* *
45777198 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45777225 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 13, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
46 47 0.16
47 151 0.52
48 5 0.02
49 89 0.30
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45777401 original size:37 final size:37
Alignment explanation
Indices: 45777343--45777421 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
45777333 CCGAGCTCTA
* * *
45777343 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
45777380 AAGACCCGATAACTTA-TTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAAC-TACGTGTGGAGATTATGTCCAGGT
45777417 AAGAC
1 AAGAC
45777422 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:45785386 original size:21 final size:21
Alignment explanation
Indices: 45785360--45785400 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45785350 GAAGCAGAAG
*
45785360 TTGTTGCAA-AAGAGGAAGTTC
1 TTGTTG-AAGAAGAGAAAGTTC
45785381 TTGTTGAAGAAGAGAAAGTT
1 TTGTTGAAGAAGAGAAAGTT
45785401 GCTAAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.37, C:0.05, G:0.29, T:0.29
Consensus pattern (21 bp):
TTGTTGAAGAAGAGAAAGTTC
Found at i:45785876 original size:17 final size:17
Alignment explanation
Indices: 45785854--45785887 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45785844 GATAAGTATA
*
45785854 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
45785871 CATTGTCATTACATTTT
1 CATTGTCATTACATTTT
45785888 TGTGTTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.53
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:45793155 original size:24 final size:24
Alignment explanation
Indices: 45793128--45793174 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
45793118 ATATGTTGAC
45793128 ATTCAAATCAGCACACATAGTGCT
1 ATTCAAATCAGCACACATAGTGCT
* *
45793152 ATTCAACTCCGCACACATAGTGC
1 ATTCAAATCAGCACACATAGTGC
45793175 CATACTACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (24 bp):
ATTCAAATCAGCACACATAGTGCT
Found at i:45793187 original size:24 final size:24
Alignment explanation
Indices: 45793138--45793198 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
45793128 ATTCAAATCA
* * *
45793138 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACAACACC
*
45793162 GCACACATAGTGCCATACTACACC
1 GCACACATAGTGCCATACAACACC
45793186 GCACACATAGTGC
1 GCACACATAGTGC
45793199 GAATGTGCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATACAACACC
Found at i:45799022 original size:44 final size:43
Alignment explanation
Indices: 45798872--45799022 Score: 132
Period size: 41 Copynumber: 3.6 Consensus size: 43
45798862 AGCTCATACA
* *
45798872 ATGCCACATCCCAGACGTGGTCTTACATGT-AATCACATATCG
1 ATGCCACGTCCCAGACATGGTCTTACATGTAAATCACATATCG
* * * *
45798914 ATGCCAC-TTCCAGACA-GGTTCTTACACG-AACTCATATA-CG
1 ATGCCACGTCCCAGACATGG-TCTTACATGTAAATCACATATCG
* * * * *
45798954 ATACCGATGTCCCACACATAGTCTTACATGTAAATCACAAATCG
1 ATGCC-ACGTCCCAGACATGGTCTTACATGTAAATCACATATCG
*
45798998 ATGCCAACGTCCCAAACATGGTCTT
1 ATGCC-ACGTCCCAGACATGGTCTT
45799023 GCACGAAATA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
40 8 0.10
41 23 0.28
42 22 0.27
43 8 0.10
44 22 0.27
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCACGTCCCAGACATGGTCTTACATGTAAATCACATATCG
Found at i:45805514 original size:29 final size:29
Alignment explanation
Indices: 45805447--45805571 Score: 198
Period size: 29 Copynumber: 4.3 Consensus size: 29
45805437 AAGTCTATAT
* *
45805447 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
45805475 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
45805504 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
45805533 ACATTCATATGGACCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
45805562 ACATTCATAT
1 ACATTCATAT
45805572 TCATACTTTC
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 21 0.24
29 68 0.76
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:45805802 original size:16 final size:16
Alignment explanation
Indices: 45805781--45805832 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
45805771 GTAGCCAAAC
*
45805781 TTTCAAATTTTTGGCA
1 TTTCAACTTTTTGGCA
45805797 TTTCAACTTTTTGGCA
1 TTTCAACTTTTTGGCA
* *
45805813 TTTCGACTTTTTAGCA
1 TTTCAACTTTTTGGCA
45805829 TTTC
1 TTTC
45805833 GGGATTTGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (16 bp):
TTTCAACTTTTTGGCA
Found at i:45812784 original size:39 final size:40
Alignment explanation
Indices: 45812685--45812906 Score: 219
Period size: 39 Copynumber: 5.6 Consensus size: 40
45812675 TGAATGATGT
* * *
45812685 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * * *
45812724 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
45812765 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
45812803 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-A
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
45812843 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAG-TACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
45812882 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
45812907 AACGAGAGCT
Statistics
Matches: 155, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
37 1 0.01
38 6 0.04
39 81 0.52
40 57 0.37
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:45812825 original size:79 final size:78
Alignment explanation
Indices: 45812688--45812906 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 78
45812678 ATGATGTCCG
* * * * * *
45812688 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTGGTGC-GAGT-ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGT
* *
45812751 GCGAGATACTAATTTCG
63 GCGAGATACTAA-ATCC
*
45812768 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGGTGCGAG-TACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTG
*
45812831 CGAGTTACTAAATCC
64 CGAGATACTAAATCC
* * *
45812846 GGTTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTGGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
45812907 AACGAGAGCT
Statistics
Matches: 119, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
78 38 0.32
79 67 0.56
80 14 0.12
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTGGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGATACTAAATCC
Found at i:45820743 original size:40 final size:39
Alignment explanation
Indices: 45820659--45820882 Score: 283
Period size: 40 Copynumber: 5.7 Consensus size: 39
45820649 TTGAATGATG
* * *
45820659 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
45820699 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
45820738 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
45820777 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
45820817 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
45820857 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45820883 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 10 0.06
39 50 0.30
40 96 0.59
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:45820904 original size:79 final size:79
Alignment explanation
Indices: 45820659--45820915 Score: 229
Period size: 79 Copynumber: 3.3 Consensus size: 79
45820649 TTGAATGATG
* * * * * * *
45820659 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTA-AACCGGGCTAAG-TCCCGAAGGCAT
** *
45820722 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* * *
45820739 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTG
** *
45820803 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
45820817 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTT
*
45820882 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
* *
45820897 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45820916 TACGTGATTT
Statistics
Matches: 153, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.01
78 44 0.29
79 55 0.36
80 52 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:45830357 original size:13 final size:14
Alignment explanation
Indices: 45830339--45830367 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45830329 AATTATCATG
45830339 AAAAATA-TTAAAC
1 AAAAATATTTAAAC
45830352 AAAAATATTTAAAC
1 AAAAATATTTAAAC
45830366 AA
1 AA
45830368 GTTGTGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATATTTAAAC
Found at i:45830803 original size:23 final size:23
Alignment explanation
Indices: 45830777--45830844 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
45830767 GGTAGAAAGG
45830777 GGGATGGTGGGGGAGAGAGGGAC
1 GGGATGGTGGGGGAGAGAGGGAC
* *
45830800 GGGA---T-GAGGAG-GAAGG--
1 GGGATGGTGGGGGAGAGAGGGAC
*
45830816 GGGATGGTGGGGGAGAGAGGAAC
1 GGGATGGTGGGGGAGAGAGGGAC
45830839 GGGATG
1 GGGATG
45830845 AGGAGGTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 14
0.63 0.10 0.27
Matches are distributed among these distances:
16 4 0.12
18 4 0.12
19 6 0.18
20 6 0.18
21 3 0.09
23 10 0.30
ACGTcount: A:0.25, C:0.03, G:0.63, T:0.09
Consensus pattern (23 bp):
GGGATGGTGGGGGAGAGAGGGAC
Found at i:45830818 original size:39 final size:39
Alignment explanation
Indices: 45830773--45830850 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
45830763 TGGAGGTAGA
*
45830773 AAGGGGGATGGTGGGGGAGAGAGGGACGGGATGAGGAGG
1 AAGGGGGATGGTGGGGGAGAGAGGAACGGGATGAGGAGG
45830812 AAGGGGGATGGTGGGGGAGAGAGGAACGGGATGAGGAGG
1 AAGGGGGATGGTGGGGGAGAGAGGAACGGGATGAGGAGG
45830851 TTTTCTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.03, G:0.63, T:0.08
Consensus pattern (39 bp):
AAGGGGGATGGTGGGGGAGAGAGGAACGGGATGAGGAGG
Found at i:45831007 original size:21 final size:21
Alignment explanation
Indices: 45830981--45831038 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
45830971 CTACGATATT
45830981 TTTATTTTTATATATTTTAAA
1 TTTATTTTTATATATTTTAAA
* *
45831002 TTTATTATTATAT-TTTTTAA
1 TTTATTTTTATATATTTTAAA
45831022 TTTATGTATTTATATAT
1 TTTAT-T-TTTATATAT
45831039 ATTTTTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 11 0.35
21 13 0.42
22 6 0.19
23 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTTTTATATATTTTAAA
Found at i:45831024 original size:27 final size:25
Alignment explanation
Indices: 45830983--45831052 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
45830973 ACGATATTTT
45830983 TATTTTTATATATTTTAAATTTATTATTA
1 TATTTTT-TA-ATTTTAAATTTA-TA-TA
**
45831012 TATTTTTTAATTTATGTATTTATATA
1 TATTTTTTAATTT-TAAATTTATATA
45831038 TATTTTTTGAATTTT
1 TATTTTTT-AATTTT
45831053 TTAGAATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
26 11 0.30
27 11 0.30
28 8 0.22
29 7 0.19
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (25 bp):
TATTTTTTAATTTTAAATTTATATA
Found at i:45832975 original size:54 final size:54
Alignment explanation
Indices: 45832893--45833005 Score: 208
Period size: 54 Copynumber: 2.1 Consensus size: 54
45832883 AACTTGACAT
45832893 ATGCAACTATATAGGAATCAGAGTTAATTGGTCAACCTAAACAATATATATTGG
1 ATGCAACTATATAGGAATCAGAGTTAATTGGTCAACCTAAACAATATATATTGG
* *
45832947 ATGCAACTATATATGAATCAGAGTTAATTGGTCAACCTAAGCAATATATATTGG
1 ATGCAACTATATAGGAATCAGAGTTAATTGGTCAACCTAAACAATATATATTGG
45833001 ATGCA
1 ATGCA
45833006 GGCATGAGAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (54 bp):
ATGCAACTATATAGGAATCAGAGTTAATTGGTCAACCTAAACAATATATATTGG
Found at i:45835557 original size:26 final size:24
Alignment explanation
Indices: 45835504--45835561 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
45835494 ATTAAACTGT
* *
45835504 TTTAAATTTTTTTAGATATATTAT
1 TTTAAATTATTTTAGATATATTAC
*
45835528 TTTAAATTATTTTATATACTATATAC
1 TTTAAATTATTTTAGATA-TAT-TAC
45835554 TTTAAATT
1 TTTAAATT
45835562 GCTTTATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 16 0.55
25 3 0.10
26 10 0.34
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTAAATTATTTTAGATATATTAC
Found at i:45835583 original size:26 final size:26
Alignment explanation
Indices: 45835466--45835814 Score: 171
Period size: 26 Copynumber: 13.8 Consensus size: 26
45835456 GACTCTTTGA
45835466 TTTT-TAT-TTATTTATTTTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
** * *
45835490 TTTTAT-TA--AACTGTTTTAAATTT
1 TTTTATATATTATTTATTTTAAATTG
* *
45835513 TTTTAGATA-TA-TTATTTTAAATTA
1 TTTTATATATTATTTATTTTAAATTG
* * *
45835537 TTTTATATACTATATACTTTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
* *
45835563 CTTTATACATTATTTATTTTAAACTTG
1 TTTTATATATTATTTATTTTAAA-TTG
* *
45835590 TTTTATGTATTATTCATTTTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
45835616 TTTTAT-TATTTACTTTAATTTT---TT-
1 TTTTATATA-TTA-TTT-ATTTTAAATTG
* ** *
45835640 TTTCATATATTATCAATTTCAAATT-
1 TTTTATATATTATTTATTTTAAATTG
* *
45835665 TTTATATGTATTATCTATTTT---TT-
1 TTT-TATATATTATTTATTTTAAATTG
* * *
45835688 ATATACCAT-TTATTT-TTTTAAGA-TG
1 TTTTA-TATATTATTTATTTTAA-ATTG
* * *
45835713 TTTTGTATATTACTTATTTTAAATTTCT
1 TTTTATATATTATTTATTTTAAA-TT-G
* * ** *
45835741 TTTTACATAATATTTATTTTAAGCTC
1 TTTTATATATTATTTATTTTAAATTG
* * *
45835767 ATTTATATATTATTTATCTTAAATTA
1 TTTTATATATTATTTATTTTAAATTG
*
45835793 TTTTACATATTATTTATTTTAA
1 TTTTATATATTATTTATTTTAA
45835815 TTTTTTTCCC
Statistics
Matches: 241, Mismatches: 58, Indels: 50
0.69 0.17 0.14
Matches are distributed among these distances:
21 4 0.02
22 11 0.05
23 21 0.09
24 36 0.15
25 23 0.10
26 97 0.40
27 26 0.11
28 23 0.10
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.60
Consensus pattern (26 bp):
TTTTATATATTATTTATTTTAAATTG
Found at i:45835944 original size:28 final size:26
Alignment explanation
Indices: 45835897--45835955 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
45835887 TAATCTATTT
*
45835897 TTAAATTTTTTTGTATATTATTGATA
1 TTAAATTTTTTTGTACATTATTGATA
* * *
45835923 TTAAATTTATTTTTTCACATTATTTATT
1 TTAAATTT-TTTTGT-ACATTATTGATA
45835951 TTAAA
1 TTAAA
45835956 CTCATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.30
27 5 0.19
28 14 0.52
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (26 bp):
TTAAATTTTTTTGTACATTATTGATA
Found at i:45835950 original size:26 final size:24
Alignment explanation
Indices: 45835892--45835950 Score: 57
Period size: 26 Copynumber: 2.3 Consensus size: 24
45835882 ACATATAATC
*
45835892 TATTT-TTAAATTTTTTTGTATAT
1 TATTTATTAAATTTTTTTGTACAT
*
45835915 TATTGATATTAAATTTATTTTTTCACAT
1 TATT--TATTAAATTT-TTTTGT-ACAT
45835943 TATTTATT
1 TATTTATT
45835951 TTAAACTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 4 0.14
25 1 0.03
26 12 0.41
27 5 0.17
28 7 0.24
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (24 bp):
TATTTATTAAATTTTTTTGTACAT
Found at i:45839085 original size:45 final size:45
Alignment explanation
Indices: 45839028--45839128 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
45839018 GGCTATGGAC
* * * **
45839028 ACACAACAAAAACATTGCAGATGGAATTTGTCTATGGTTATGGGT
1 ACACAACAAAAACACTGCAAATGGAATCTACCTATGGTTATGGGT
* *
45839073 ACACAACAAAAACACTGTAAATGGAATCTACCTATGGTTATTGGT
1 ACACAACAAAAACACTGCAAATGGAATCTACCTATGGTTATGGGT
45839118 ACACAACAAAA
1 ACACAACAAAA
45839129 TAATACAGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (45 bp):
ACACAACAAAAACACTGCAAATGGAATCTACCTATGGTTATGGGT
Found at i:45841222 original size:27 final size:26
Alignment explanation
Indices: 45841184--45841252 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
45841174 GCGGATACTC
*
45841184 CACAGCTCGTGTAAGCAAGCCCATT-TT
1 CACAGCTCGTGTAAGCAA-CAC-TTATT
*
45841211 CACAGCTCGTGTGAGC-ACACTTATT
1 CACAGCTCGTGTAAGCAACACTTATT
*
45841236 CATAGCTCGTGTAAGCA
1 CACAGCTCGTGTAAGCA
45841253 TATATGTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 2 0.06
25 18 0.50
26 1 0.03
27 15 0.42
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
CACAGCTCGTGTAAGCAACACTTATT
Found at i:45849140 original size:25 final size:25
Alignment explanation
Indices: 45849106--45849155 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
45849096 ATCCCTTGAC
45849106 TTGGAAATGTTAGAAACAAATAATT
1 TTGGAAATGTTAGAAACAAATAATT
*
45849131 TTGGAAATGTTAGAAATAAATAATT
1 TTGGAAATGTTAGAAACAAATAATT
45849156 CTTTGCACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (25 bp):
TTGGAAATGTTAGAAACAAATAATT
Found at i:45850265 original size:75 final size:74
Alignment explanation
Indices: 45850142--45850286 Score: 281
Period size: 75 Copynumber: 1.9 Consensus size: 74
45850132 CTTGATCTTC
45850142 AAGTTTAATCAATGTTCTGGTTGAGTTGGTGCACTCAAACTGCACCTGCTTTATGTTCGTTCTCA
1 AAGTTTAATCAATGTTCTGGTTGAGTTGGTGCACTCAAACTGCACCTGCTTTATGTTCG-TCTCA
45850207 TTGACTACAT
65 TTGACTACAT
45850217 AAGTTTAATCAATGTTCTGGTTGAGTTGGTGCACTCAAACTGCACCTGCTTTATGTTCGTCTCAT
1 AAGTTTAATCAATGTTCTGGTTGAGTTGGTGCACTCAAACTGCACCTGCTTTATGTTCGTCTCAT
45850282 TGACT
66 TGACT
45850287 GCATCTCTTT
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 11 0.16
75 59 0.84
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (74 bp):
AAGTTTAATCAATGTTCTGGTTGAGTTGGTGCACTCAAACTGCACCTGCTTTATGTTCGTCTCAT
TGACTACAT
Found at i:45854927 original size:12 final size:12
Alignment explanation
Indices: 45854910--45854942 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
45854900 CGGCATGCCC
45854910 ATATTAATTTTT
1 ATATTAATTTTT
45854922 ATATT-ATTTTT
1 ATATTAATTTTT
45854933 ATA-TAATTTT
1 ATATTAATTTT
45854943 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:45854978 original size:18 final size:20
Alignment explanation
Indices: 45854943--45854983 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
45854933 ATATAATTTT
*
45854943 AAAATATATATAATACATCA
1 AAAATATATATAAAACATCA
45854963 AAAATAT-TA-AAAACATCA
1 AAAATATATATAAAACATCA
45854981 AAA
1 AAA
45854984 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 2 0.10
20 7 0.35
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAATATATATAAAACATCA
Found at i:45855100 original size:30 final size:30
Alignment explanation
Indices: 45855066--45855125 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
45855056 ACTTAACAAG
*
45855066 TAAATGCCTCTAAAATAATAACAAAATTAA
1 TAAATACCTCTAAAATAATAACAAAATTAA
** *
45855096 TAAATATTTTTAAAATAATAACAAAATTAA
1 TAAATACCTCTAAAATAATAACAAAATTAA
45855126 CAATTAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (30 bp):
TAAATACCTCTAAAATAATAACAAAATTAA
Found at i:45855183 original size:22 final size:22
Alignment explanation
Indices: 45855158--45855200 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
45855148 TATCCAAACA
45855158 ATAACAATAAAAT-AGTAGCAAC
1 ATAACAATAAAATGA-TAGCAAC
*
45855180 ATAATAATAAAATGATAGCAA
1 ATAACAATAAAATGATAGCAA
45855201 AATAGGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATGATAGCAAC
Found at i:45861411 original size:48 final size:48
Alignment explanation
Indices: 45861298--45861447 Score: 176
Period size: 48 Copynumber: 3.1 Consensus size: 48
45861288 CTAGGCTATC
* * *
45861298 GGCATCGATATGTGATCCCATGTAAGACCATGTATGGGACATGACATT
1 GGCATCGATATGTGATCCCATATAAGACCATGTATGGGACTTGGCATT
** ** *
45861346 GGCATCGACCTACGATCCCATATAAGACCATGTGTGGGACTTGGCATT
1 GGCATCGATATGTGATCCCATATAAGACCATGTATGGGACTTGGCATT
* * **
45861394 GGCATCGATATGTGATCCCATATAAAACCATCTCCGGGA-TATGGCATT
1 GGCATCGATATGTGATCCCATATAAGACCATGTATGGGACT-TGGCATT
45861442 GGCATC
1 GGCATC
45861448 CTACCATGTG
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
47 1 0.01
48 84 0.99
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (48 bp):
GGCATCGATATGTGATCCCATATAAGACCATGTATGGGACTTGGCATT
Found at i:45869087 original size:43 final size:43
Alignment explanation
Indices: 45869020--45869136 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 43
45869010 ACATGGCTTT
** *
45869020 GGCATCGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATC
1 GGCATCGATATGTGATCCCATGTAAGACCATAGCTGGGCTATC
45869063 GGCATCGATATGTGATCCCATGTAAGACCATAGCTGGGCTATC
1 GGCATCGATATGTGATCCCATGTAAGACCATAGCTGGGCTATC
* *
45869106 GGTATCGATATGTGATCCCATGTAAAACCAT
1 GGCATCGATATGTGATCCCATGTAAGACCAT
45869137 GCCTAACACA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (43 bp):
GGCATCGATATGTGATCCCATGTAAGACCATAGCTGGGCTATC
Found at i:45869198 original size:48 final size:48
Alignment explanation
Indices: 45869119--45869254 Score: 148
Period size: 47 Copynumber: 2.9 Consensus size: 48
45869109 ATCGATATGT
* *** * * *
45869119 GATCCCATGTAAAACCATGCCTAACACATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAACATAC
* * * **
45869167 GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-CAATATGT
1 GATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAACATAC
*
45869214 GATCCCATGTAAAACCATAACTGGGATATGGCATTGGCATC
1 GATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATC
45869255 TTACCATGTG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
47 39 0.53
48 34 0.47
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (48 bp):
GATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAACATAC
Found at i:45869238 original size:47 final size:48
Alignment explanation
Indices: 45868986--45869254 Score: 177
Period size: 43 Copynumber: 5.8 Consensus size: 48
45868976 GTTATGTACA
* * * * *
45868986 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGTG
1 ATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAATATGTG
** * * * *
45869034 ATTTCGTGTAAGACCAT-AGCTGGGCTAT--C---GGCATCGATATGTG
1 ATCCCATGTAAAACCATGA-CTGGGATATGGCATTGGCATCAATATGTG
* * * *
45869077 ATCCCATGTAAGACCAT-AGCTGGGCTAT--C---GGTATCGATATGTG
1 ATCCCATGTAAAACCATGA-CTGGGATATGGCATTGGCATCAATATGTG
* *** * * ** **
45869120 ATCCCATGTAAAACCATGCCTAACACATGGCATTGGCATCGACCTACG
1 ATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAATATGTG
* *
45869168 ATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-CAATATGTG
1 ATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAATATGTG
*
45869215 ATCCCATGTAAAACCATAACTGGGATATGGCATTGGCATC
1 ATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATC
45869255 TTACCATGTG
Statistics
Matches: 177, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
43 73 0.41
45 1 0.01
46 1 0.01
47 39 0.22
48 63 0.36
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (48 bp):
ATCCCATGTAAAACCATGACTGGGATATGGCATTGGCATCAATATGTG
Found at i:45875735 original size:32 final size:32
Alignment explanation
Indices: 45875692--45875782 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
45875682 CAAGCCCATC
*
45875692 GGGCCTAAGCCC-ATTCAGATAACAGTGATACT
1 GGGCCTAAGCCCTATTCAGATAACA-TGAAACT
* * * *
45875724 GGGCCTGAGCCCTTTTCAGATTACATTAAACT
1 GGGCCTAAGCCCTATTCAGATAACATGAAACT
* *
45875756 GGGCCTTAGCCCCTTATTCAAATAACA
1 GGGCCTAAG-CCC-TATTCAGATAACA
45875783 GTATGGCCCA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
32 24 0.51
33 13 0.28
34 10 0.21
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (32 bp):
GGGCCTAAGCCCTATTCAGATAACATGAAACT
Found at i:45877413 original size:24 final size:24
Alignment explanation
Indices: 45877379--45877455 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
45877369 CCAACTCCTG
*
45877379 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
*
45877403 CTCCTTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
*
45877427 CTCCCTTATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
45877451 CTCCT
1 CTCCT
45877456 GACAGCCTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.19, C:0.38, G:0.05, T:0.38
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:45883617 original size:33 final size:35
Alignment explanation
Indices: 45883579--45883659 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 35
45883569 GCCTAAGCTC
*
45883579 ATTCAGATAACAGTGATACTGGGCCAGAG-CCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
* * **
45883613 -TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
45883646 ATTCAGATAACAGT
1 ATTCAGATAACAGT
45883660 ATGGCCTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 12 0.32
33 15 0.39
34 10 0.26
35 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (35 bp):
ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
Found at i:45884000 original size:26 final size:26
Alignment explanation
Indices: 45883971--45884023 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
45883961 TCCAACATGC
45883971 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* * *
45883997 ATTTCGGTACTTTATCTTCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
45884023 A
1 A
45884024 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:45885312 original size:24 final size:24
Alignment explanation
Indices: 45885280--45885371 Score: 139
Period size: 24 Copynumber: 3.8 Consensus size: 24
45885270 AACTCCTGTT
*
45885280 CTTTGATCAGCTCCTAAATCTTCTC
1 CTTT-ATCAGCTCCTAAATCCTCTC
45885305 CTTTATCAGCTCCTAAATCCTCTC
1 CTTTATCAGCTCCTAAATCCTCTC
* *
45885329 CCTTATCAGCTTCTAAATCCTCTC
1 CTTTATCAGCTCCTAAATCCTCTC
*
45885353 CCTTATCAGCTCCTAAATC
1 CTTTATCAGCTCCTAAATC
45885372 TTTTCCTGAC
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 59 0.94
25 4 0.06
ACGTcount: A:0.22, C:0.36, G:0.05, T:0.37
Consensus pattern (24 bp):
CTTTATCAGCTCCTAAATCCTCTC
Found at i:45886790 original size:43 final size:43
Alignment explanation
Indices: 45886736--45886893 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
45886726 AACAAGTATA
* * * * *
45886736 ATGCCAATGTCCCGGATATGGTCTTACATGTAATTCAATATCG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCAATATCG
* *
45886779 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGATA-CG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCA-ATATCG
* *
45886821 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTAA-ATCG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATC-AATATCG
* * *
45886864 AGGCCTGTGTCCCAGACACGGTCTTACACG
1 ATGCCTATGTCCCAGACATGGTCTTACACG
45886894 ATGTCTGAGA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 34 0.36
43 60 0.63
44 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCAATATCG
Found at i:45886879 original size:85 final size:85
Alignment explanation
Indices: 45886736--45886894 Score: 221
Period size: 85 Copynumber: 1.9 Consensus size: 85
45886726 AACAAGTATA
* * * * * *
45886736 ATGCCAATGTCCCGGATATGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAATATCGAGGCCTCTGTCCCAGACACGGT
45886801 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * *
45886821 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTAA-ATCGAGGCCTGTGTCCCAGACACGG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-AATATCGAGGCCTCTGTCCCAGACACGG
45886885 TCTTACACGA
65 TCTTACACGA
45886895 TGTCTGAGAC
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 62 0.97
86 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:45906296 original size:43 final size:43
Alignment explanation
Indices: 45906168--45906297 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 43
45906158 CATAGGATTC
* * * *
45906168 CGATATGTGATTTCATGTAAGGCCACGTTTGGGACGTTGGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
* * * * *
45906211 CGATTTGTGATTTGCGTGAAAGACC-CTGTCTGGGACAGTGGCAT
1 CGATATGTGA-TTACATGTAAGACCAC-GTCTGGGACATTGGCAT
45906255 CGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
45906298 TGTACGAGCT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
43 37 0.52
44 34 0.48
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:45911859 original size:40 final size:40
Alignment explanation
Indices: 45911828--45912000 Score: 258
Period size: 40 Copynumber: 4.3 Consensus size: 40
45911818 GGACTAAGAT
*
45911828 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTC
45911868 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTC
* * *
45911908 CCGAAGGCATTTGTGCTAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTC
* * * *
45911948 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGTTAAGTC
45911988 CCGAAGGCATTTG
1 CCGAAGGCATTTG
45912001 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 122 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTC
Found at i:45911912 original size:80 final size:80
Alignment explanation
Indices: 45911775--45912000 Score: 262
Period size: 80 Copynumber: 2.8 Consensus size: 80
45911765 TTGAATGATG
* * * * * * *
45911775 TCCGGGCTAAGTCCCCAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
45911837 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* *
45911855 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATT
* *
45911919 TGTGCTAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
45911935 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
45912000 G
66 G
45912001 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
79 2 0.02
80 114 0.90
81 10 0.08
82 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:45911989 original size:120 final size:120
Alignment explanation
Indices: 45911775--45912000 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 120
45911765 TTGAATGATG
* *
45911775 TCCGGGCTAAGTCCCCAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCCAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
45911840 GTGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * * **
45911895 TCCGGGTTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCCAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
45911958 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTG
45912001 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
119 3 0.03
120 80 0.88
121 8 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCCAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:45912014 original size:40 final size:40
Alignment explanation
Indices: 45911856--45912019 Score: 129
Period size: 40 Copynumber: 4.1 Consensus size: 40
45911846 GATACTAATT
* ** *
45911856 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TGACTATA-A
* ** * *
45911896 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
45911935 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
45911976 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
45912016 CCGG
1 CCGG
45912020 TTAAATTCCG
Statistics
Matches: 111, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
39 2 0.02
40 107 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:45912018 original size:80 final size:80
Alignment explanation
Indices: 45911849--45912033 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 80
45911839 TGTGCGAGAT
* * *
45911849 ACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAG
** * *
45911914 GCATTTGTGCTAGTT
66 GCATTTGAACGAGTG
* *
45911929 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAGTCCCGAA
45911993 GGCATTTGAACGAG-G
65 GGCATTTGAACGAGTG
* * *
45912008 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
45912034 TACGTGATTT
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 17 0.19
80 74 0.81
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAG
GCATTTGAACGAGTG
Found at i:45917378 original size:17 final size:17
Alignment explanation
Indices: 45917358--45917398 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
45917348 AATAAAGTTT
45917358 AAATAAAAATAAAAGAA
1 AAATAAAAATAAAAGAA
* *
45917375 AAATAAAAATAATAGTA
1 AAATAAAAATAAAAGAA
45917392 AAATAAA
1 AAATAAA
45917399 GGGACTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (17 bp):
AAATAAAAATAAAAGAA
Found at i:45929933 original size:13 final size:13
Alignment explanation
Indices: 45929915--45929939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45929905 AGGCCGTGTG
45929915 AGGGACACGAGCT
1 AGGGACACGAGCT
45929928 AGGGACACGAGC
1 AGGGACACGAGC
45929940 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.40, T:0.04
Consensus pattern (13 bp):
AGGGACACGAGCT
Found at i:45937974 original size:43 final size:44
Alignment explanation
Indices: 45937854--45937974 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 44
45937844 AGCTCGTACA
** * *
45937854 ATGCCAACATCCCAGACGTGGTCTTACATGT-AATCAAATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* * * *
45937897 ATGCCATTGTCCCAGATAGGGTCTTACACG-AAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* * *
45937939 ATTCCAATGTCTCAGACATGGTCTTATATGTAAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATC
45937975 TCAAATTAAT
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
42 24 0.39
43 37 0.61
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:45948600 original size:18 final size:20
Alignment explanation
Indices: 45948577--45948617 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45948567 ATGGAAGCCC
45948577 ACATTTCT-CCA-ATATTTT
1 ACATTTCTACCACATATTTT
*
45948595 ACATTTTTACCACATATTTT
1 ACATTTCTACCACATATTTT
45948615 ACA
1 ACA
45948618 CCTTTTGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 3 0.15
20 10 0.50
ACGTcount: A:0.32, C:0.22, G:0.00, T:0.46
Consensus pattern (20 bp):
ACATTTCTACCACATATTTT
Found at i:45951954 original size:20 final size:20
Alignment explanation
Indices: 45951929--45951970 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
45951919 TATACATAGC
45951929 CTCATTGAACCATCTTTCTT
1 CTCATTGAACCATCTTTCTT
45951949 CTCATTGAACCATCTTTCTT
1 CTCATTGAACCATCTTTCTT
45951969 CT
1 CT
45951971 TTACAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.31, G:0.05, T:0.45
Consensus pattern (20 bp):
CTCATTGAACCATCTTTCTT
Found at i:45953550 original size:36 final size:36
Alignment explanation
Indices: 45953503--45953574 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
45953493 TTCCCAAGTG
45953503 ATGTTTTCCTTTGGCACCACTGAAGACAAAGTCTTC
1 ATGTTTTCCTTTGGCACCACTGAAGACAAAGTCTTC
*
45953539 ATGTTTTCCTTTGGCACCGCTGAAGACAAAGTCTTC
1 ATGTTTTCCTTTGGCACCACTGAAGACAAAGTCTTC
45953575 CACCAGTGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (36 bp):
ATGTTTTCCTTTGGCACCACTGAAGACAAAGTCTTC
Found at i:45957092 original size:42 final size:43
Alignment explanation
Indices: 45957032--45957203 Score: 129
Period size: 42 Copynumber: 4.0 Consensus size: 43
45957022 CATAGGATTT
*
45957032 TCGATATGTG-TTATTGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATTTGATT-TTGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
45957075 TCGACT-TTTGTTTTGTGTGTAAGACCATGCCTAGGACATTGGCA
1 TCGA-TATTTGATTT-TGTGTAAGACCACGTCTGGGACATTGGCA
* * * * *
45957119 TCG-TATCTGATTTTGTGTAAGACC-CTATCTTGGATAGTGGCA
1 TCGATATTTGATTTTGTGTAAGACCAC-GTCTGGGACATTGGCA
* ** * * *
45957161 TCGATGTTTGA-TTAATGTAATACCACGTTTGGGACGTTGGCA
1 TCGATATTTGATTTTGTGTAAGACCACGTCTGGGACATTGGCA
45957203 T
1 T
45957204 TGTATATGCT
Statistics
Matches: 99, Mismatches: 23, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
42 47 0.47
43 20 0.20
44 32 0.32
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (43 bp):
TCGATATTTGATTTTGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:45957133 original size:44 final size:43
Alignment explanation
Indices: 45957046--45957142 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 43
45957036 TATGTGTTAT
* * *
45957046 TGTGTAAGACCACGTCTGGGACATTGGCATCGACTTTTGTTTTG
1 TGTGTAAGACCACGCCTAGGACATTGGCATCGAC-TCTGTTTTG
* *
45957090 TGTGTAAGACCATGCCTAGGACATTGGCATCGTA-TCTGATTT-
1 TGTGTAAGACCACGCCTAGGACATTGGCATCG-ACTCTGTTTTG
45957132 TGTGTAAGACC
1 TGTGTAAGACC
45957143 CTATCTTGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 11 0.23
43 6 0.13
44 29 0.62
45 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTGTAAGACCACGCCTAGGACATTGGCATCGACTCTGTTTTG
Found at i:45961544 original size:40 final size:40
Alignment explanation
Indices: 45961494--45961637 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
45961484 AGCACTAGCT
* * *
45961494 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
45961534 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
**
45961574 CAAACACCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* *
45961614 CGAATGCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
45961638 AAATTAGCCA
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
Found at i:45961669 original size:80 final size:82
Alignment explanation
Indices: 45961482--45961678 Score: 235
Period size: 80 Copynumber: 2.5 Consensus size: 82
45961472 TTAGCCAGAT
* * *
45961482 ATAGCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGG
1 ATAGCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGA
45961547 GACTTAGCCCGGATATA
66 GACTTAGCCCGGATATA
* * ** * *
45961564 ATAG--CTCGCACAAACACCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGA
1 ATAGCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGA
45961627 GACTTAGCCC-GA-A-A
66 GACTTAGCCCGGATATA
* *
45961641 TTAGCCACTAGCTCTAATGCTCTT-GGGACTTAGCCCGG
1 ATAG-CACTAGCTCAAATGC-CTTCGGGACTTAGCCCGG
45961679 TTATCATCCG
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
77 4 0.04
78 1 0.01
79 2 0.02
80 82 0.85
81 3 0.03
82 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
ATAGCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGA
GACTTAGCCCGGATATA
Found at i:45966726 original size:29 final size:29
Alignment explanation
Indices: 45966693--45966959 Score: 177
Period size: 29 Copynumber: 9.2 Consensus size: 29
45966683 ACGCTCATCA
* *
45966693 AATATCAAAAGGGATGGTTTCGACCATTT
1 AATATGAAAAGGGATGGTTTCGACCATTC
* *
45966722 AATATGAAGAGAGATGGTTTC-ACCATTC
1 AATATGAAAAGGGATGGTTTCGACCATTC
* * *
45966750 AATATGAAAAGGGATGGTTTTGGCCATTG
1 AATATGAAAAGGGATGGTTTCGACCATTC
**
45966779 AATATG-AAAGGAGATATGGTGAC-AGCC-TTC
1 AATATGAAAAGG-G--ATGGTTTCGA-CCATTC
**
45966809 AAATATGAAAAGGGATGGTAACGACCA-TC
1 -AATATGAAAAGGGATGGTTTCGACCATTC
** ** * **
45966838 GAATATGAAAAGTTATGGTGACAACCATGG
1 -AATATGAAAAGGGATGGTTTCGACCATTC
* ** **
45966868 AATATGAAAAGCGATGGTGACGACCATGG
1 AATATGAAAAGGGATGGTTTCGACCATTC
* *
45966897 AATATGAAAAGGGATAGTTTTGACCA-TC
1 AATATGAAAAGGGATGGTTTCGACCATTC
** *
45966925 AAATATGAAAAGGGATGGTGACGACCATTG
1 -AATATGAAAAGGGATGGTTTCGACCATTC
45966955 AATAT
1 AATAT
45966960 TAATTTCGAC
Statistics
Matches: 189, Mismatches: 37, Indels: 24
0.76 0.15 0.10
Matches are distributed among these distances:
28 29 0.15
29 137 0.72
30 4 0.02
31 14 0.07
32 5 0.03
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (29 bp):
AATATGAAAAGGGATGGTTTCGACCATTC
Found at i:45966884 original size:58 final size:58
Alignment explanation
Indices: 45966688--45966959 Score: 224
Period size: 58 Copynumber: 4.7 Consensus size: 58
45966678 TATCGACGCT
* ** ** * * **
45966688 CATCAAATATCAAAAGGGATGGTTTCGACCATTTAATATGAAGAGAGATGGTTTC-AC
1 CATCAAATATGAAAAGGGATGGTAACGACCATCGAATATGAAAAGATATGGTGACAAC
*** * * *
45966745 CATTC-AATATGAAAAGGGATGGTTTTGGCCATTGAATATGAAAGGAGATATGGTGACAGC
1 CA-TCAAATATGAAAAGGGATGGTAACGACCATCGAATATGAAA--AGATATGGTGACAAC
* *
45966805 CTTCAAATATGAAAAGGGATGGTAACGACCATCGAATATGAAAAGTTATGGTGACAAC
1 CATCAAATATGAAAAGGGATGGTAACGACCATCGAATATGAAAAGATATGGTGACAAC
** * * * ** * ****
45966863 CATGGAATATGAAAAGCGATGGTGACGACCATGGAATATGAAAAGGGATAGTTTTGAC
1 CATCAAATATGAAAAGGGATGGTAACGACCATCGAATATGAAAAGATATGGTGACAAC
* *
45966921 CATCAAATATGAAAAGGGATGGTGACGACCATTGAATAT
1 CATCAAATATGAAAAGGGATGGTAACGACCATCGAATAT
45966960 TAATTTCGAC
Statistics
Matches: 176, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
57 35 0.20
58 95 0.54
59 11 0.06
60 35 0.20
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (58 bp):
CATCAAATATGAAAAGGGATGGTAACGACCATCGAATATGAAAAGATATGGTGACAAC
Found at i:45973253 original size:40 final size:40
Alignment explanation
Indices: 45973209--45973433 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
45973199 GCTCCTCGTT
* *
45973209 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
45973249 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
45973289 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
45973328 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTATCTCGCA
* * * * *
45973368 CAAATGCCTTC-GGATCTTAGTCGGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ATC-TCGCA
45973409 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45973434 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 113 0.69
41 14 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:45973312 original size:79 final size:78
Alignment explanation
Indices: 45973209--45973433 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 78
45973199 GCTCCTCGTT
* *
45973209 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCACACAAATGCCTTCGGGACTTAGCCCGG
45973274 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
45973289 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCACACAAATGCCTTCGGGA-CTTAGCCCG
*
45973352 GATTTAGTATCTCGCA
63 GATTTAGTAACTCGCA
* * * * *
45973368 CAAATGCCTTCGGATCTTAGTCGGGATATGGTCACTT-AGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCA-CACAAATGCCTTCGGGACTTAGCCC
45973431 GGA
62 GGA
45973434 CATCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
78 6 0.05
79 63 0.52
80 41 0.34
81 11 0.09
82 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCACACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:45984238 original size:49 final size:49
Alignment explanation
Indices: 45984161--45984405 Score: 328
Period size: 49 Copynumber: 4.9 Consensus size: 49
45984151 TAGCCGAAGC
* * *
45984161 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
45984210 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
45984260 CATCTGATACACGTAGTCGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
45984311 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
45984360 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
45984406 TCACAATAGC
Statistics
Matches: 169, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 84 0.50
50 47 0.28
51 38 0.22
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:45984337 original size:101 final size:98
Alignment explanation
Indices: 45984174--45984405 Score: 338
Period size: 100 Copynumber: 2.3 Consensus size: 98
45984164 CTGGTACGCA
* * * *
45984174 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
45984239 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* *
45984273 TAGTCGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
45984338 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
45984373 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
45984406 TCACAATAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 29 0.25
100 46 0.39
101 43 0.36
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:45986364 original size:28 final size:28
Alignment explanation
Indices: 45986314--45986401 Score: 133
Period size: 28 Copynumber: 3.1 Consensus size: 28
45986304 CACATACCTG
45986314 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCA-TAGGCCCAAATCACATT
45986342 TATATGGCCCATAGGCCCAAATCACATT
1 TATATGGCCCATAGGCCCAAATCACATT
* *
45986370 TATATGGCCCATCAGGCCCAATTCATATT
1 TATATGGCCCAT-AGGCCCAAATCACATT
45986399 TAT
1 TAT
45986402 CGACATGCTC
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
27 7 0.12
28 32 0.57
29 17 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
TATATGGCCCATAGGCCCAAATCACATT
Found at i:45990337 original size:29 final size:29
Alignment explanation
Indices: 45990276--45990365 Score: 130
Period size: 29 Copynumber: 3.1 Consensus size: 29
45990266 CACATACCTG
* *
45990276 TATATGGCCTACTAGGCCC-AATCACATT
1 TATATGGCCCAATAGGCCCAAATCACATT
45990304 TATATGGCCCAATAGGCCCAAATCACATT
1 TATATGGCCCAATAGGCCCAAATCACATT
*
45990333 TATATGGCCC-ATCAGGCCCAATTCACATT
1 TATATGGCCCAAT-AGGCCCAAATCACATT
45990362 TATA
1 TATA
45990366 GACATGCTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
28 19 0.33
29 38 0.67
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCAATAGGCCCAAATCACATT
Found at i:45994144 original size:28 final size:29
Alignment explanation
Indices: 45994112--45994229 Score: 143
Period size: 28 Copynumber: 4.1 Consensus size: 29
45994102 CACATACCTA
45994112 TATATGGCCCA-CGAGGCCCAATCACATT
1 TATATGGCCCATCGAGGCCCAATCACATT
45994140 TATATGGCCCA-CGAGGCCCAATCACATT
1 TATATGGCCCATCGAGGCCCAATCACATT
* ** * * *
45994168 TGTATGGCCCATTAAGTCCAAATCATATT
1 TATATGGCCCATCGAGGCCCAATCACATT
*
45994197 TGTATGGCCCATC-AGGCCCAATTCACATT
1 TATATGGCCCATCGAGGCCCAA-TCACATT
45994226 TATA
1 TATA
45994230 GTCATGCTCA
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 44 0.57
29 33 0.43
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (29 bp):
TATATGGCCCATCGAGGCCCAATCACATT
Found at i:45996354 original size:44 final size:44
Alignment explanation
Indices: 45996284--45996402 Score: 175
Period size: 44 Copynumber: 2.7 Consensus size: 44
45996274 TATGTGTTAT
*
45996284 CATGTAAGACCACATCTAGGACGTTGGCATCGACTTACGATTTA
1 CATGTAAGACCACATCTAGGACGTTGGCATCGACTTACAATTTA
* * * *
45996328 CATGTAAGACCACGTCTGGGATGTTGGCATCGACTTATAATTTA
1 CATGTAAGACCACATCTAGGACGTTGGCATCGACTTACAATTTA
* *
45996372 CGTGTAAGACTACATCTAGGACGTTGGCATC
1 CATGTAAGACCACATCTAGGACGTTGGCATC
45996403 ATATTTGATT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (44 bp):
CATGTAAGACCACATCTAGGACGTTGGCATCGACTTACAATTTA
Found at i:46001426 original size:21 final size:21
Alignment explanation
Indices: 46001402--46001442 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46001392 GTGTGAGACC
46001402 CTCACACGA-TCGTGCCTACCG
1 CTCACAC-ACTCGTGCCTACCG
*
46001423 CTCACACACTCGTGTCTACC
1 CTCACACACTCGTGCCTACC
46001443 CTGTACTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.20, C:0.44, G:0.15, T:0.22
Consensus pattern (21 bp):
CTCACACACTCGTGCCTACCG
Found at i:46011279 original size:15 final size:15
Alignment explanation
Indices: 46011259--46011288 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
46011249 CAACACTTGT
46011259 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
46011274 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
46011289 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:46015068 original size:13 final size:13
Alignment explanation
Indices: 46015043--46015089 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
46015033 TCCTCTTCCC
46015043 CTTTCTTTG-TTTT
1 CTTT-TTTGTTTTT
46015056 CTTTTTTGTTTTT
1 CTTTTTTGTTTTT
*
46015069 CTTTTTTTCTTTATT
1 C-TTTTTTGTTT-TT
46015084 CTTTTT
1 CTTTTT
46015090 GCAAACAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 4 0.13
13 9 0.30
14 14 0.47
15 3 0.10
ACGTcount: A:0.02, C:0.13, G:0.04, T:0.81
Consensus pattern (13 bp):
CTTTTTTGTTTTT
Found at i:46015078 original size:21 final size:22
Alignment explanation
Indices: 46015044--46015089 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
46015034 CCTCTTCCCC
* *
46015044 TTTCTTTGTTTTCTTTTTTGTT
1 TTTCTTTGTTTTCTTTATTCTT
46015066 TTTCTTT-TTTTCTTTATTCTT
1 TTTCTTTGTTTTCTTTATTCTT
46015087 TTT
1 TTT
46015090 GCAAACAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.02, C:0.11, G:0.04, T:0.83
Consensus pattern (22 bp):
TTTCTTTGTTTTCTTTATTCTT
Found at i:46017208 original size:29 final size:29
Alignment explanation
Indices: 46017162--46017390 Score: 280
Period size: 29 Copynumber: 7.9 Consensus size: 29
46017152 CATTAAAGAA
* *
46017162 GACCATCGAATATAAAAAGAGATGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGAC
*
46017191 GACCATCGAATATGAAAAGGGATGGTGAT
1 GACCATCGAATATGAAAAGGGATGGTGAC
* *
46017220 GACCATTGAATATGAAAAGGGATGGTGAT
1 GACCATCGAATATGAAAAGGGATGGTGAC
* * *
46017249 GACCATTGAATATGAAGAGGGATAGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGAC
* * **
46017278 GACCATCAAATATGAAAAAGGATGGTTTC
1 GACCATCGAATATGAAAAGGGATGGTGAC
* ** *
46017307 TACCATCGAATACAAAAAGGGGTGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGAC
* *
46017336 GACCATCGAATATGAAAAAGGACGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGAC
46017365 GACCATCGAATAT-AGAAAGGGATGGT
1 GACCATCGAATATGA-AAAGGGATGGT
46017391 TTCAACTATC
Statistics
Matches: 169, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
28 1 0.01
29 168 0.99
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.20
Consensus pattern (29 bp):
GACCATCGAATATGAAAAGGGATGGTGAC
Found at i:46020214 original size:3 final size:3
Alignment explanation
Indices: 46020208--46020286 Score: 63
Period size: 3 Copynumber: 26.7 Consensus size: 3
46020198 ATTTTTCTTC
* * * * *
46020208 TTA TTA TTT TTT TTA CTA TCA TTA TTA TTA TTA TTA TTA TTA TT- TGTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * *
46020256 TTA CTA TT- TGA TTA TTA TTA TTA TTG TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
46020287 TCATTATTTG
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.03
3 57 0.95
4 1 0.02
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:46022695 original size:40 final size:40
Alignment explanation
Indices: 46022616--46022792 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
46022606 CGGATGATAA
* * * * *
46022616 CCGGACTAAGATCCGAAGGCATTCGTGCGACTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
46022656 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
46022696 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
46022736 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
46022776 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
46022793 ATGCTTGGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 101 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:46028847 original size:40 final size:40
Alignment explanation
Indices: 46028774--46028944 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
46028764 ATAACCAGAA
* * * *
46028774 TAAGATCCGAAGGCATTCGTGCGACTTGCTATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
* * * *
46028814 TATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGC
* *
46028854 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTC
1 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
*
46028894 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT-CTGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
46028933 TAA-ATCCCGAAG
1 TAAGA-CCCGAAG
46028945 ATGCTTGGGT
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 93 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
Found at i:46034244 original size:25 final size:24
Alignment explanation
Indices: 46034216--46034262 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
46034206 ATTTATTTCC
* *
46034216 TTTTCAGTTTTCTTTTTTTTTTTGT
1 TTTTCAGTTGT-TTTTTTATTTTGT
*
46034241 TTTTTAGTTGTTTTTTTATTTT
1 TTTTCAGTTGTTTTTTTATTTT
46034263 CTTAGACTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.06, C:0.04, G:0.09, T:0.81
Consensus pattern (24 bp):
TTTTCAGTTGTTTTTTTATTTTGT
Found at i:46040568 original size:49 final size:49
Alignment explanation
Indices: 46040496--46040592 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
46040486 CTTACATAGT
46040496 TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAACG
1 TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAACG
*
46040545 TACCTCAAAATAGAATAAATGGTAGGTTAAGTACCATGTTATACGAAC
1 TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAAC
46040593 TTACTAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.27
Consensus pattern (49 bp):
TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAACG
Found at i:46042057 original size:30 final size:29
Alignment explanation
Indices: 46042023--46042086 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
46042013 ATGAATCGAA
46042023 AGCTTTGGCACTAAATGTGCGATTTAAACT
1 AGCTTTGGCACTAAATGTGCGATTT-AACT
*
46042053 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAATGTGCGATTTAACT
46042082 AGCTT
1 AGCTT
46042087 CGGCTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAATGTGCGATTTAACT
Found at i:46046992 original size:26 final size:26
Alignment explanation
Indices: 46046963--46047015 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
46046953 TCAAACATGC
46046963 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
46046989 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
46047015 A
1 A
46047016 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:46048303 original size:24 final size:24
Alignment explanation
Indices: 46048269--46048345 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
46048259 CCAACTCCTG
*
46048269 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
* *
46048293 CTCCTTTATCAGCTCTTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
*
46048317 CTCCCTTATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
46048341 CTCCT
1 CTCCT
46048346 GACAGCATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.19, C:0.36, G:0.05, T:0.39
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:46050229 original size:42 final size:41
Alignment explanation
Indices: 46050170--46050279 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 41
46050160 TTTTTAGTAG
*
46050170 GCATGCTTAACGTGCAAATCAAATCTAAGATCAACATAGTC
1 GCATGCTTAACATGCAAATCAAATCTAAGATCAACATAGTC
* * * * *
46050211 AGCATGCTTAACATGCAAATCAAATATCAGTTTATCATAGTC
1 -GCATGCTTAACATGCAAATCAAATCTAAGATCAACATAGTC
* * *
46050253 GACATGCTTCACTTGCAAATAAAATCT
1 G-CATGCTTAACATGCAAATCAAATCT
46050280 TAATTAATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.02
42 56 0.98
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (41 bp):
GCATGCTTAACATGCAAATCAAATCTAAGATCAACATAGTC
Found at i:46051040 original size:21 final size:21
Alignment explanation
Indices: 46051014--46051055 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
46051004 TAATAAAAAG
*
46051014 GATATTCGAAATTCCTTTCTA
1 GATATTCAAAATTCCTTTCTA
46051035 GATATTCAAAATTCCTTTCTA
1 GATATTCAAAATTCCTTTCTA
46051056 ACCGATTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (21 bp):
GATATTCAAAATTCCTTTCTA
Found at i:46053734 original size:25 final size:25
Alignment explanation
Indices: 46053700--46053749 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
46053690 TGATCATGTA
46053700 TTACTACCAGAAAAGAATATAAACC
1 TTACTACCAGAAAAGAATATAAACC
46053725 TTACTACCAGAAAAGAATATAAACC
1 TTACTACCAGAAAAGAATATAAACC
46053750 AACTTCCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.08, T:0.20
Consensus pattern (25 bp):
TTACTACCAGAAAAGAATATAAACC
Found at i:46061354 original size:15 final size:15
Alignment explanation
Indices: 46061334--46061364 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
46061324 TCAATTGGAA
46061334 TTAGATTTTAAGATT
1 TTAGATTTTAAGATT
46061349 TTAGATTTTAAGATT
1 TTAGATTTTAAGATT
46061364 T
1 T
46061365 CTACTCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (15 bp):
TTAGATTTTAAGATT
Found at i:46061356 original size:7 final size:8
Alignment explanation
Indices: 46061336--46061364 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
46061326 AATTGGAATT
46061336 AGATTTTA
1 AGATTTTA
46061344 AGATTTT-
1 AGATTTTA
46061351 AGATTTTA
1 AGATTTTA
46061359 AGATTT
1 AGATTT
46061365 CTACTCATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (8 bp):
AGATTTTA
Found at i:46062251 original size:42 final size:42
Alignment explanation
Indices: 46062199--46062403 Score: 173
Period size: 42 Copynumber: 4.9 Consensus size: 42
46062189 TCATACTCAT
* * * *
46062199 AATACCATATCAATGCCATATCTCGGATATGGTCTTACATGA
1 AATATCATATCAATGCCATATCCCAGACATGGTCTTACATGA
* * * * *
46062241 AATATCATATCAATGCTATGTCCCTGACATGGTCTTATA-CA
1 AATATCATATCAATGCCATATCCCAGACATGGTCTTACATGA
* * * **
46062282 AA-ATCACATACTGATGCCATATCCCAGACATGGTCTTATACAA
1 AATATCATAT-C-AATGCCATATCCCAGACATGGTCTTACATGA
* * * *
46062325 AATCA-CATACCAATGTCATATCCTAGATATGGTCTTACATGA
1 AAT-ATCATATCAATGCCATATCCCAGACATGGTCTTACATGA
* * *
46062367 AATATCATATCAATGCTATGTCCCTGACATGGTCTTA
1 AATATCATATCAATGCCATATCCCAGACATGGTCTTA
46062404 TACAAAATCA
Statistics
Matches: 127, Mismatches: 30, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
40 6 0.05
41 5 0.04
42 108 0.85
43 4 0.03
44 3 0.02
45 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (42 bp):
AATATCATATCAATGCCATATCCCAGACATGGTCTTACATGA
Found at i:46062357 original size:84 final size:84
Alignment explanation
Indices: 46062199--46062435 Score: 232
Period size: 84 Copynumber: 2.8 Consensus size: 84
46062189 TCATACTCAT
* * * * * ** * *
46062199 AATACCATATCAATGCCATATCTCGGATATGGTCTTACATGAAAT-ATCATATCAATG-CTATGT
1 AATATCATATCAATGCCATATCCCAGACATGGTCTTATACAAAATCA-CATACCAATGTC-ATAT
* *
46062262 CCCT-GACATGGTCTTATACAA
64 -CCTAGATATGGTCTTACACAA
*
46062283 AATCA-CATA-CTGATGCCATATCCCAGACATGGTCTTATACAAAATCACATACCAATGTCATAT
1 AAT-ATCATATC-AATGCCATATCCCAGACATGGTCTTATACAAAATCACATACCAATGTCATAT
**
46062346 CCTAGATATGGTCTTACATGA
64 CCTAGATATGGTCTTACACAA
* * * *
46062367 AATATCATATCAATGCTATGTCCCTGACATGGTCTTATACAAAATCACATACCGATGTCATATCC
1 AATATCATATCAATGCCATATCCCAGACATGGTCTTATACAAAATCACATACCAATGTCATATCC
46062432 TAGA
66 TAGA
46062436 CATTTGTATT
Statistics
Matches: 128, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
83 5 0.04
84 119 0.93
85 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (84 bp):
AATATCATATCAATGCCATATCCCAGACATGGTCTTATACAAAATCACATACCAATGTCATATCC
TAGATATGGTCTTACACAA
Found at i:46062438 original size:42 final size:42
Alignment explanation
Indices: 46062266--46062438 Score: 199
Period size: 42 Copynumber: 4.1 Consensus size: 42
46062256 CTATGTCCCT
** * *
46062266 GACATGGTCTTATACAAAATCACATACTGATGCCATATCCCA
1 GACATGGTCTTATACAAAATCACATACCAATGTCATATCCTA
46062308 GACATGGTCTTATACAAAATCACATACCAATGTCATATCCTA
1 GACATGGTCTTATACAAAATCACATACCAATGTCATATCCTA
* * ** * *
46062350 GATATGGTCTTACATGAAAT-ATCATATCAATG-CTATGTCCCT-
1 GACATGGTCTTATACAAAATCA-CATACCAATGTC-ATAT-CCTA
*
46062392 GACATGGTCTTATACAAAATCACATACCGATGTCATATCCTA
1 GACATGGTCTTATACAAAATCACATACCAATGTCATATCCTA
46062434 GACAT
1 GACAT
46062439 TTGTATTCTA
Statistics
Matches: 108, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
41 5 0.05
42 98 0.91
43 5 0.05
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (42 bp):
GACATGGTCTTATACAAAATCACATACCAATGTCATATCCTA
Found at i:46065532 original size:47 final size:46
Alignment explanation
Indices: 46065446--46065545 Score: 114
Period size: 47 Copynumber: 2.2 Consensus size: 46
46065436 TTTCTTAATC
* * *
46065446 TAAGACACATTAAAAAGTTGTACTTATTATAACATATTAATTAAACT
1 TAAGACACATTAAAAAGCTATACTTAATATAACATATTAA-TAAACT
* *
46065493 TAAGACACATTAAAATGCTATAC-TAAT-TAACATGCATTAATAGACT
1 TAAGACACATTAAAAAGCTATACTTAATATAACAT--ATTAATAAACT
46065539 TAAGACA
1 TAAGACA
46065546 TATTTAAGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
45 6 0.13
46 15 0.33
47 25 0.54
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (46 bp):
TAAGACACATTAAAAAGCTATACTTAATATAACATATTAATAAACT
Found at i:46068145 original size:17 final size:16
Alignment explanation
Indices: 46068123--46068156 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46068113 CGCTCTCTCT
*
46068123 TTTGCTCTCTTATTTTC
1 TTTGCTCT-TTACTTTC
46068140 TTTGCTCTTTACTTTC
1 TTTGCTCTTTACTTTC
46068156 T
1 T
46068157 GCCTGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.06, C:0.24, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTGCTCTTTACTTTC
Found at i:46069862 original size:9 final size:9
Alignment explanation
Indices: 46069848--46069872 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
46069838 TGGATTATTT
46069848 TGAATGAAA
1 TGAATGAAA
46069857 TGAATGAAA
1 TGAATGAAA
46069866 TGAATGA
1 TGAATGA
46069873 TTGAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:46073823 original size:96 final size:96
Alignment explanation
Indices: 46073654--46073841 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 96
46073644 AAGGAGAAAT
* * * * * *
46073654 ACGATTGAGTTATCACATTTTGTGCAATATTGTTGGTGTAGTTCAAAAGGTCATAAGGGTTTCCA
1 ACGATTGAGATATCACATTTTGTGCAATATTATTGGTGTAGTGCAAAAGATCATAACGGTATCCA
46073719 ATGCCCAATTAAATATCCAAATAGAGAGAAG
66 ATGCCCAATTAAATATCCAAATAGAGAGAAG
* * * * *
46073750 ACGATTGAGATATCACCTTTTGTGCAATGTTATTGGTGTAGTGCAGAATATCGTAACGGTATCCA
1 ACGATTGAGATATCACATTTTGTGCAATATTATTGGTGTAGTGCAAAAGATCATAACGGTATCCA
* *
46073815 ATGTCCAATTAAATATCCAACTAGAGA
66 ATGCCCAATTAAATATCCAAATAGAGA
46073842 AGAAAGTAAC
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (96 bp):
ACGATTGAGATATCACATTTTGTGCAATATTATTGGTGTAGTGCAAAAGATCATAACGGTATCCA
ATGCCCAATTAAATATCCAAATAGAGAGAAG
Found at i:46076821 original size:21 final size:22
Alignment explanation
Indices: 46076795--46076848 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
46076785 TGGCCTGCAG
**
46076795 CACGGGCGTGT-CCTAGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
*
46076816 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
46076838 CACGGGCGTGT
1 CACGGGCGTGT
46076849 GAGCCTTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.13, C:0.31, G:0.37, T:0.19
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:46078432 original size:46 final size:45
Alignment explanation
Indices: 46078251--46078560 Score: 220
Period size: 46 Copynumber: 6.6 Consensus size: 45
46078241 TTATTTATGT
* * * *
46078251 GCCAGTGTAAGACATGTCAGGGACATGTATCGGCCAC-ATTATGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACGA-GATGTAA
* * * *
46078297 GCCAGTGTAAGACCATGTATGGGACATGGCATTGGCATTGAGACG-AGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-CGAGATGTA-A
* * *
46078345 GCTAGTGTAAGACATATCTGGGACATGCATCAGC-CTTGAGATGTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC--GAGATGTAA
*
46078391 GCCAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT--
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGAGATGTAA
* *
46078435 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCT--
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACG---AGATGTAA
** * *
46078483 GTTAATGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACG-AGATGT-A-A
*
46078533 GCTAGTGTAAGAACATGTCTGGGACATG
1 GCCAGTGTAAG-ACATGTCTGGGACATG
46078561 GCGTCGGCCT
Statistics
Matches: 216, Mismatches: 28, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 73 0.34
47 28 0.13
48 62 0.29
49 2 0.01
50 23 0.11
51 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGAGATGTAA
Found at i:46078502 original size:48 final size:48
Alignment explanation
Indices: 46078302--46078663 Score: 236
Period size: 48 Copynumber: 7.6 Consensus size: 48
46078292 TGAAAGCCAG
* * * * *
46078302 TGTAAGACCATGTATGGGACATGGCATTGGCA--T-TGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGATGAG-TC-AA
* * *
46078350 TGTAAGA-CATATCTGGGACAT-GCATCAGC-C-T-TGAGATGTAAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGATG--AGTCAA
* *
46078396 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG---AGATGTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTATAGATGAGTCAA
** *
46078440 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCTGTTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATGAGTCAA
* * *
46078488 TGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATG-TGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATA-GATGAG-TC-AA
* * * * *
46078538 TGTAAGAACATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CACG-TATAGATGAGTCAA
* * ** * *
46078587 TTTAAGATCATGTCTGGGACATGGCATC-G-AATTGATGGATGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGATGAGTCAA
*
46078634 TGTAAGACCATGTCTTGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
46078664 TATTATACCC
Statistics
Matches: 253, Mismatches: 41, Indels: 40
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 58 0.23
47 43 0.17
48 59 0.23
49 27 0.11
50 30 0.12
51 6 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATGAGTCAA
Found at i:46078568 original size:50 final size:48
Alignment explanation
Indices: 46078254--46078663 Score: 191
Period size: 48 Copynumber: 8.7 Consensus size: 48
46078244 TTTATGTGCC
* * * * *
46078254 AGTGTAAGA-CATGTCAGGGACAT-GTATCGGCCACAT-TATGA-AAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGTATA-GATCAGCT
* * * * *
46078300 AGTGTAAGACCATGTATGGGACATGGCATTGGCA-TTGAGACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATA-GATCAGCT
* * * *
46078348 AGTGTAAGA-CATATCTGGGACAT-GCATCAGC-C-T-TGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGA--TCAGCT
* **
46078394 AATGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG---AGATGTG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTATAGATCAGCT
* *
46078437 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCTGTT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCAGCT
* * *
46078486 AATGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATA-GAT--CAGCT
* * * * *
46078536 AGTGTAAGAACATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-AG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACG-TATAGATCAGCT
* * * ** * *
46078584 CAATTTAAGATCATGTCTGGGACATGGCATC-G-AATTGATGGATGAG-T
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGATCAGCT
*
46078631 CAGTGTAAGACCATGTCTTGGACATGGCATCGG
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG
46078664 TATTATACCC
Statistics
Matches: 286, Mismatches: 49, Indels: 56
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 11 0.04
45 19 0.07
46 62 0.22
47 56 0.20
48 69 0.24
49 30 0.10
50 31 0.11
51 4 0.01
52 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCAGCT
Found at i:46086296 original size:40 final size:39
Alignment explanation
Indices: 46086252--46086476 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
46086242 GCTCCTCGTT
* *
46086252 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TATAGTAACTCGCA
* *
46086292 CAAATGCCTTCGGGTCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TATAGTAACTCGCA
* * *
46086332 CAAATGCCTTCGAGACTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTA-TAGTAACTCGCA
* *
46086372 CAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTA-TAGTAACTCGCA
* ** * * *
46086412 CAAAGGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGG-TATAGTAAC-TCGCA
*
46086453 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
46086477 ACATCATTCA
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 145 0.91
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTATAGTAACTCGCA
Found at i:46086356 original size:80 final size:78
Alignment explanation
Indices: 46086252--46086477 Score: 265
Period size: 80 Copynumber: 2.8 Consensus size: 78
46086242 GCTCCTCGTT
* *
46086252 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
46086317 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
46086332 CAAATGCCTTCGAGACTTAACCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCG-GACTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
46086397 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
46086412 CAAAGGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
46086476 GA
63 GA
46086478 CATCATTCAA
Statistics
Matches: 125, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
79 4 0.03
80 112 0.90
81 9 0.07
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCA
Found at i:46086461 original size:120 final size:120
Alignment explanation
Indices: 46086252--46086477 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 120
46086242 GCTCCTCGTT
* * * *
46086252 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAAGGCCTTCGGATCTTAACCCGG
* *
46086317 ATTTAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGAGACTTAACCCGGAATTAGTATCTCGCA
* * **
46086372 CAAATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAACCCGGATA-TAGTAACTCGCACAAAGGCCTTCGGATCTTAACCCG
* * * *
46086436 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
65 GATATAGTAAC-TAGCACAAATGCCTTCGAGACTTAACCCGGA
46086478 CATCATTCAA
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
119 1 0.01
120 81 0.90
121 8 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAAGGCCTTCGGATCTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGAGACTTAACCCGGAATTAGTATCTCGCA
Found at i:46094274 original size:40 final size:40
Alignment explanation
Indices: 46094237--46094462 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
46094227 GCTACTCGTT
* * *
46094237 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
*
46094277 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
*
46094317 CAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
*
46094357 CAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
** * * *
46094397 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAAT-TAGTAAC-TCGCA
*
46094438 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
46094463 CATCATTCAA
Statistics
Matches: 169, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 5 0.03
40 151 0.89
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Done.