Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 136 of 311
Found at i:46097335 original size:47 final size:45
Alignment explanation
Indices: 46097263--46097718 Score: 326
Period size: 47 Copynumber: 9.8 Consensus size: 45
46097253 GGGTAAGGTA
* * * *
46097263 CCGATGCCATGTCCCAAACACGGTCTTACATTGGCTCACATCTCAAG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTCACATCTCAAG
* * **
46097310 TCGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTTGTAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA-CATC-TCAAG
* * * * * *
46097358 TCGATGCATGTCCCAGACATGTCTTACATTGGCTTACTTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AAG
* * *
46097404 CCGATGCATGTACCAGACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-G
* * * *
46097450 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCA-AG
* **
46097498 CCGATGCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTTGTAG
1 CCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCA-CATC-TCAAG
* * * * * *
46097545 TCGATGCATGTCCCAGACATGTCTTACATTGGCTTACTTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AAG
* * * * *
46097591 CAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-G
* * * *
46097637 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCA-AG
* *
46097685 CTGATGCATGTCCCAGACATGTCTTACACCAGCT
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCT
46097719 TACACACGAA
Statistics
Matches: 327, Mismatches: 62, Indels: 41
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.01
46 124 0.38
47 138 0.42
48 59 0.18
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAG
Found at i:46097514 original size:94 final size:94
Alignment explanation
Indices: 46097263--46097718 Score: 400
Period size: 94 Copynumber: 4.9 Consensus size: 94
46097253 GGGTAAGGTA
* * * * * * * *
46097263 CCGATGCCATGTCCCAAACACGGTCTTACATTGGCTCACAT-CTCA-AGTCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATG-CATGTACCA
* * * **
46097326 GACATGGTCTTACACTAACTATCATCT-TGTAG
64 GACAT-GTCTTACACTAGCTCTCGTCTCAAT-G
* * **
46097358 TCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACTTC-T-CGA-GGCCGATGCATGTACC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCATAATATGGCCGATGCATGTACC
46097418 AGACATGTCTTACACTAGCTCTCGTCTCAATG
63 AGACATGTCTTACACTAGCTCTCGTCTCAATG
* * *
46097450 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTACCAGA
* * * **
46097515 CATGGTCTTACACTAACTATCATCT-TGTAG
66 CAT-GTCTTACACTAGCTCTCGTCTCAAT-G
* * ** *
46097545 TCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACTTC-T-CGA-GGCAGATGCATGTACC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCATAATATGGCCGATGCATGTACC
*
46097605 ACACATGTCTTACACTAGCTCTCGTCTCAATG
63 AGACATGTCTTACACTAGCTCTCGTCTCAATG
* *
46097637 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTACCAGA
*
46097702 CATGTCTTACACCAGCT
66 CATGTCTTACACTAGCT
46097719 TACACACGAA
Statistics
Matches: 294, Mismatches: 47, Indels: 41
0.77 0.12 0.11
Matches are distributed among these distances:
91 4 0.01
92 52 0.18
93 89 0.30
94 112 0.38
95 34 0.12
96 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTACCAGA
CATGTCTTACACTAGCTCTCGTCTCAATG
Found at i:46097578 original size:187 final size:187
Alignment explanation
Indices: 46097263--46097713 Score: 764
Period size: 187 Copynumber: 2.4 Consensus size: 187
46097253 GGGTAAGGTA
* * * * * *
46097263 CCGATGCCATGTCCCAAACACGGTCTTACATTGGCTCACAT-CTCA-AGTCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATG-CATGTCCCA
46097326 GACATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGC
64 GACATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGC
* *
46097391 TTACTTCTCGAGGCCGATGCATGTACCAGACATGTCTTACACTAGCTCTCGTCTCAATG
129 TTACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
*
46097450 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGA
46097515 CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTT
66 CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTT
46097580 ACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
131 ACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
* *
46097637 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGA
46097702 CAT-GTCTTACAC
66 CATGGTCTTACAC
46097714 CAGCTTACAC
Statistics
Matches: 250, Mismatches: 12, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
186 9 0.04
187 234 0.94
188 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (187 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGA
CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTT
ACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
Found at i:46097601 original size:140 final size:137
Alignment explanation
Indices: 46097263--46097712 Score: 433
Period size: 140 Copynumber: 3.2 Consensus size: 137
46097253 GGGTAAGGTA
* * * * *
46097263 CCGATGCCATGTCCCAAACACGGTCTTACATTGGCTCACATCTCAAGTCGATGCCATGTCCCAGA
1 CCGATG-CATGTCCCAGACA-TGTCTTACATTGGCTTACATCTCAAGGCGATGCCATGTCCCAAA
* * * * * *
46097328 CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACAT-GTCTTACATTGGCT
64 CATGGTCTTACACTAGCTCTCAT-ATAT-GCCGATGCATGTCCCAGACATGGTCTTACACTGGCT
* *
46097392 TACTTCTCG-AGG
127 T-CATCTTGTA-G
* * * * *
46097404 CCGATGCATGTACCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATGCCATGTCCCAAA
1 CCGATGCATGTCCCAGACATGTCTTACATTGGCT-TACATCTCAA-GGCGATGCCATGTCCCAAA
**
46097468 CATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGACATGGTCTTACACTAACT
64 CATGGTCTTACACTAGCTCTCAT-ATAT-GCCGATGCATGTCCCAGACATGGTCTTACACTGGCT
46097533 ATCATCTTGTAG
127 -TCATCTTGTAG
* * * * *
46097545 TCGATGCATGTCCCAGACATGTCTTACATTGGCTTACTTCTCGAGGCAGATG-CATGTACCACAC
1 CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCAAGGC-GATGCCATGTCCCAAAC
* *
46097609 AT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTCATAT--ATGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCT
** * *
46097673 CTCATAATATGG
127 -TCATCTTGTAG
*
46097685 CTGATGCATGTCCCAGACATGTCTTACA
1 CCGATGCATGTCCCAGACATGTCTTACA
46097713 CCAGCTTACA
Statistics
Matches: 258, Mismatches: 41, Indels: 21
0.81 0.13 0.07
Matches are distributed among these distances:
138 1 0.00
139 44 0.17
140 148 0.57
141 63 0.24
142 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (137 bp):
CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCAAGGCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCATATATGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTCAT
CTTGTAG
Found at i:46118995 original size:47 final size:47
Alignment explanation
Indices: 46118924--46119328 Score: 675
Period size: 47 Copynumber: 8.6 Consensus size: 47
46118914 CCCTTCGGGA
* * * * * *
46118924 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46118971 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46119018 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46119065 CTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46119112 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46119159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46119206 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46119255 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46119302 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
46119329 TATTCAAATA
Statistics
Matches: 340, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 295 0.87
49 45 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46119002 original size:25 final size:25
Alignment explanation
Indices: 46118974--46119052 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
46118964 ACTCGGCCCT
46118974 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
46118999 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
46119021 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
46119046 ATCACAT
1 ATCACAT
46119053 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:46123386 original size:40 final size:40
Alignment explanation
Indices: 46123354--46123784 Score: 747
Period size: 40 Copynumber: 10.8 Consensus size: 40
46123344 CCAGCATGAT
* * * *
46123354 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
46123394 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
46123434 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46123474 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46123514 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46123554 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46123593 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46123633 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46123673 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46123713 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46123753 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
46123785 CTCAATTCTC
Statistics
Matches: 374, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.10
40 336 0.90
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:46123708 original size:199 final size:200
Alignment explanation
Indices: 46123354--46123784 Score: 747
Period size: 199 Copynumber: 2.2 Consensus size: 200
46123344 CCAGCATGAT
* * * * **
46123354 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
* *
46123419 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGA
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGA
46123484 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGC
131 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGC
46123549 ACGAA
196 ACGAA
*
46123554 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
* *
46123618 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGA
*
46123683 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGC
131 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGC
46123748 ACGAA
196 ACGAA
46123753 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
46123785 CTCAATTCTC
Statistics
Matches: 218, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
199 187 0.86
200 31 0.14
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (200 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGA
GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGC
ACGAA
Found at i:46125268 original size:47 final size:47
Alignment explanation
Indices: 46125197--46125600 Score: 657
Period size: 47 Copynumber: 8.6 Consensus size: 47
46125187 CCCTTCGGGA
* * * * * *
46125197 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46125244 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46125291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46125338 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46125385 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46125431 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46125478 CTTATCACATATATATACACTTTCACATTCATCACCTTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46125527 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46125574 CTTATCACTTATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
46125601 TATTCAAATA
Statistics
Matches: 337, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
46 45 0.13
47 249 0.74
49 43 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46125275 original size:25 final size:25
Alignment explanation
Indices: 46125247--46125325 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
46125237 ACTCGGCCCT
46125247 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
46125272 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
46125294 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
46125319 ATCACAT
1 ATCACAT
46125326 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:46132143 original size:42 final size:43
Alignment explanation
Indices: 46132066--46132167 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
46132056 TCCTGGACGT
* * **
46132066 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGACAG
*
46132109 GGTCTTACACG-AAATCAGATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGCCGATGTCCCAGACAG
*
46132151 GGTCTTATACGTAAATC
1 GGTCTTACACGTAAATC
46132168 TCAATCAAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
42 33 0.65
43 18 0.35
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGACAG
Found at i:46133537 original size:30 final size:29
Alignment explanation
Indices: 46133480--46133567 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
46133470 TAAGGCTATT
* * *
46133480 GATTATGAAAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGATTACAACCATC
*
46133509 GATTAATGAAAAGGGATGATTTCAACCATC
1 GATT-ATGAAAAGGGATGATTACAACCATC
* * *
46133539 GAATATAAAAAGGGACGATTACAACCATC
1 GATTATGAAAAGGGATGATTACAACCATC
46133568 ATTTAGCACA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
29 26 0.52
30 24 0.48
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (29 bp):
GATTATGAAAAGGGATGATTACAACCATC
Found at i:46142954 original size:48 final size:48
Alignment explanation
Indices: 46142899--46143106 Score: 215
Period size: 48 Copynumber: 4.3 Consensus size: 48
46142889 AGGTCCCGTG
* * *
46142899 TAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCTTGTA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCTCGTA
* * *
46142947 TAAGACCATATCTGGGATATGGCATCGGTATC-AGTATGAGATCTCATG
1 TAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGAGATCTCGTA
* *
46142995 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGA-AGTCCCGTA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGA-TCTCGTA
* * * * * * * *
46143043 TAAGACCATGTCTGGGACATGGAATCAGCACCGTTATAAGA-CTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATC-TCGTA
*
46143091 TAAGACCATAGCTGGG
1 TAAGACCATATCTGGG
46143107 TTGTTGGCAT
Statistics
Matches: 132, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
47 3 0.02
48 127 0.96
49 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCTCGTA
Found at i:46143093 original size:96 final size:96
Alignment explanation
Indices: 46142895--46143106 Score: 250
Period size: 96 Copynumber: 2.2 Consensus size: 96
46142885 ATTGAGGTCC
**
46142895 CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCTTGTATAAGACCATATCT
1 CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCCCGTATAAGACCATATCT
* * * * *
46142960 GGGATATGGCATCGGTATCAGTATGAGATCT
66 GGGACATGGAATCAGCATCAGTATAAGATCT
* * * * *
46142991 CATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGA-AGTCCCGTATAAGACCATGTC
1 CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGA-TCCCGTATAAGACCATATC
*
46143055 TGGGACATGGAATCAGCA-CCGTTATAAGA-CTT
65 TGGGACATGGAATCAGCATCAG-TATAAGATC-T
*
46143087 CGTGTAAGACCATAGCTGGG
1 CGTGTAAGACCATATCTGGG
46143107 TTGTTGGCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
95 4 0.04
96 94 0.96
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (96 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCCCGTATAAGACCATATCT
GGGACATGGAATCAGCATCAGTATAAGATCT
Found at i:46149034 original size:116 final size:117
Alignment explanation
Indices: 46148800--46149083 Score: 340
Period size: 116 Copynumber: 2.4 Consensus size: 117
46148790 TATTAGCGAT
* * *
46148800 CATCGAATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGAT-GGTGACGACCATCAA
1 CATCGAATATGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGGATAGCTGACGACCATCAA
**
46148864 CTATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGATGAC
66 CTATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAAC
* * * * * * **
46148916 CATTGAATATGAAAAGGGATAGCTTTGGCTATCGAAAATGAAAAAGGATAGCT-TCGGCTATTGA
1 CATCGAATATGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGGATAGCTGACGACCATCAA
* * *
46148980 TTATGAAAAGGGATGGTGACGACCATCAACTATGGAAAGGGATGGTGACAAC
66 CTATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAAC
** * * *
46149032 CATCGGTTAATGAAAAGGGAT-GATTTCGACCATCGAATATGAAAAGGGATAG
1 CATCGAAT-ATGAAAAGGGATAGCTTT-GGCTATCGAATATGAAAAGGGATAG
46149084 TTACAACCAT
Statistics
Matches: 141, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
116 106 0.75
117 35 0.25
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (117 bp):
CATCGAATATGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGGATAGCTGACGACCATCAA
CTATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAAC
Found at i:46149092 original size:29 final size:29
Alignment explanation
Indices: 46148800--46149095 Score: 224
Period size: 29 Copynumber: 10.2 Consensus size: 29
46148790 TATTAGCGAT
* * *
46148800 CATCGAATATGAAAAGGGATAGCT-TCGGC
1 CATCGAATATGAAAAGGGAT-GGTGACGAC
* *
46148829 TATCGATTATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
46148858 CATC-AACTATGAAAAGGGATGGTGACGAC
1 CATCGAA-TATGAAAAGGGATGGTGACGAC
* *
46148887 CATCAAATATGAAAAGGGATGGTGATGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* * ** *
46148916 CATTGAATATGAAAAGGGATAGCT-TTGGC
1 CATCGAATATGAAAAGGGAT-GGTGACGAC
* * * * * *
46148945 TATCGAAAATGAAAAAGGATAGCT-TCGGC
1 CATCGAATATGAAAAGGGAT-GGTGACGAC
* * *
46148974 TATTGATTATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* *
46149003 CATC-AACTATGGAAAGGGATGGTGACAAC
1 CATCGAA-TATGAAAAGGGATGGTGACGAC
** * **
46149032 CATCGGTTAATGAAAAGGGATGATTTCGAC
1 CATCGAAT-ATGAAAAGGGATGGTGACGAC
* * *
46149062 CATCGAATATGAAAAGGGATAGTTACAAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
46149091 CATCG
1 CATCG
46149096 TTTAACACAC
Statistics
Matches: 216, Mismatches: 43, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
28 6 0.03
29 184 0.85
30 26 0.12
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTGACGAC
Found at i:46155591 original size:20 final size:20
Alignment explanation
Indices: 46155563--46155600 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46155553 CTAGGAACTA
46155563 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
46155583 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
46155601 TATATGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:46158863 original size:18 final size:19
Alignment explanation
Indices: 46158833--46158869 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
46158823 AAGATAGCCT
46158833 AAAAAGTGCAAAA-GAAAA
1 AAAAAGTGCAAAAGGAAAA
46158851 AAAAAGT-CAAAAAGGAAAA
1 AAAAAGTGC-AAAAGGAAAA
46158870 TTACACAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.06
18 11 0.65
19 5 0.29
ACGTcount: A:0.73, C:0.05, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAAAGTGCAAAAGGAAAA
Found at i:46163959 original size:14 final size:15
Alignment explanation
Indices: 46163942--46163970 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46163932 TCACGAAAAT
46163942 TTCACACAT-ATAAA
1 TTCACACATAATAAA
46163956 TTCACACATAATAAA
1 TTCACACATAATAAA
46163971 CACCAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:46164431 original size:42 final size:42
Alignment explanation
Indices: 46164321--46164483 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 42
46164311 AGCTCGTACA
* * * * * *
46164321 ATGCCAACGTCCCAGACGTGGTCTTCCATGTAGTCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATAT-G
46164364 ATGCC-ACTGT-CCATGACA-GGATCTTACACGAAATCATATATG
1 ATGCCAAC-GTCCCA-GACATGG-TCTTACACGAAATCATATATG
* * * * *
46164406 ATGCCAATGTCCCGGACATGGTCTTAAACGTAAATC-TCAAATC
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAT-ATATG
* *
46164449 ATTGCCAACGTCCTAGACATGGTCTTACACAAAAT
1 A-TGCCAACGTCCCAGACATGGTCTTACACGAAAT
46164484 TTCATATCGG
Statistics
Matches: 95, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 28 0.29
43 43 0.45
44 24 0.25
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATG
Found at i:46165599 original size:13 final size:13
Alignment explanation
Indices: 46165581--46165605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46165571 ACAAATGATA
46165581 AAATTTTCACACG
1 AAATTTTCACACG
46165594 AAATTTTCACAC
1 AAATTTTCACAC
46165606 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:46171849 original size:19 final size:19
Alignment explanation
Indices: 46171825--46171936 Score: 156
Period size: 19 Copynumber: 5.8 Consensus size: 19
46171815 AATCTTTAAG
46171825 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
46171844 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
46171863 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
46171880 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
46171899 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
46171920 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
46171937 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.19
19 48 0.57
20 3 0.04
21 9 0.11
22 8 0.10
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:46171872 original size:36 final size:37
Alignment explanation
Indices: 46171825--46171922 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
46171815 AATCTTTAAG
46171825 GATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATTAGATAT
*
46171863 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATTAGATAT
46171899 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
46171923 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATTAGATAT
Found at i:46175172 original size:13 final size:13
Alignment explanation
Indices: 46175154--46175178 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46175144 ACAAATGATA
46175154 AAATTTTCACACG
1 AAATTTTCACACG
46175167 AAATTTTCACAC
1 AAATTTTCACAC
46175179 ATATCACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:46178354 original size:47 final size:47
Alignment explanation
Indices: 46178300--46178493 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
46178290 TTAGGATTTT
** * *
46178300 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46178347 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
46178394 ATGTGATGAATGTGATCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
46178441 ATGTGGTGAATATGAACATGCATAAATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46178488 ATGTGA
1 ATGTGA
46178494 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:46178400 original size:22 final size:22
Alignment explanation
Indices: 46178329--46178400 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
46178319 GTATATATGA
46178329 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
46178351 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
46178376 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
46178398 GAT
1 GAT
46178401 GAATGTGATC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:46178623 original size:98 final size:96
Alignment explanation
Indices: 46178466--46178647 Score: 312
Period size: 98 Copynumber: 1.9 Consensus size: 96
46178456 ACATGCATAA
*
46178466 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAT
46178531 GGCTAATGTGAAATATGTATGAGATATGCAT
66 GGCTAATGTGAAATATGTATGAGATATGCAT
46178562 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATTTGAGATATGTATATGTGGTAAAGCCG
1 ATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATA--TGAGATATGTATATGTGGTAAAGCCG
*
46178626 AATGGCTAGTGTGAAATATGTA
63 AATGGCTAATGTGAAATATGTA
46178648 CGCGATGTGC
Statistics
Matches: 81, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
95 1 0.01
96 33 0.41
98 47 0.58
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATATGTATGAGATATGCAT
Found at i:46178663 original size:50 final size:48
Alignment explanation
Indices: 46178466--46178647 Score: 303
Period size: 48 Copynumber: 3.8 Consensus size: 48
46178456 ACATGCATAA
46178466 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
46178514 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
46178562 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATTTGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTA--TGAGATATGTAT
*
46178612 ATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
46178648 CGCGATGTGC
Statistics
Matches: 125, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.01
48 80 0.64
50 43 0.34
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
Found at i:46178843 original size:37 final size:37
Alignment explanation
Indices: 46178793--46178900 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
46178783 GGAAATATAT
46178793 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
46178830 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
46178867 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
46178901 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:46183572 original size:27 final size:26
Alignment explanation
Indices: 46183531--46183642 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
46183521 AGGAAGTGTC
*
46183531 CTGGTGGCTAC-GCCACAATTATATGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGAT
* *
46183558 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
46183585 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
46183613 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
46183639 CTGG
1 CTGG
46183643 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:46183635 original size:54 final size:54
Alignment explanation
Indices: 46183531--46183642 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
46183521 AGGAAGTGTC
*
46183531 CTGGTGGCTACGCCACAATTATATGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATATGATCTAGTGACTCTGCCACATATATCTGTT
* * * *
46183585 CTGGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTAC-GCCACAATTATATG-ATCTAGTGACTCTGCCACATATATCTGTT
46183639 CTGG
1 CTGG
46183643 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.65
55 17 0.33
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATATGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:46192377 original size:30 final size:30
Alignment explanation
Indices: 46192343--46192403 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46192333 TCCTTAACTC
46192343 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
46192373 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
46192403 A
1 A
46192404 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:46194401 original size:87 final size:87
Alignment explanation
Indices: 46194254--46194425 Score: 319
Period size: 87 Copynumber: 2.0 Consensus size: 87
46194244 GACTAAACCG
46194254 AGAACTTACAAAAATCTTGGAAATTTCATGCTTTAAGGCTCCACACGCCCGTGTCCCAAAGTCGT
1 AGAACTTACAAAAATCTTGGAAATTTCATGCTTTAAGGCTCCACACGCCCGTGTCCCAAAGTCGT
46194319 GTTCCATACACGGCTGAGACAAA
66 GTTCCATACAC-GCTGAGACAAA
*
46194342 AGAACTTACGAAAATCTTGGAAA-TTCATGCTTTAAGGCTCCACACGCCCGTGTCCCAAAGTCGT
1 AGAACTTACAAAAATCTTGGAAATTTCATGCTTTAAGGCTCCACACGCCCGTGTCCCAAAGTCGT
46194406 GTTCCATACACGCTGAGACA
66 GTTCCATACACGCTGAGACA
46194426 CATGTCGTGT
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
86 9 0.11
87 52 0.63
88 22 0.27
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (87 bp):
AGAACTTACAAAAATCTTGGAAATTTCATGCTTTAAGGCTCCACACGCCCGTGTCCCAAAGTCGT
GTTCCATACACGCTGAGACAAA
Found at i:46198863 original size:30 final size:30
Alignment explanation
Indices: 46198829--46198889 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46198819 TCTTTAACTC
*
46198829 AAACTTTGGTAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
46198859 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
46198889 A
1 A
46198890 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:46202303 original size:30 final size:30
Alignment explanation
Indices: 46202269--46202329 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
46202259 TTCCCGAGCC
46202269 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
46202299 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
46202329 T
1 T
46202330 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:46205715 original size:28 final size:28
Alignment explanation
Indices: 46205622--46205733 Score: 101
Period size: 27 Copynumber: 4.1 Consensus size: 28
46205612 AGGAAGCGTC
46205622 CTGGTGGCTAC-GCCACAATTATCTG-AT
1 CTGGTGGCT-CTGCCACAATTATCTGTAT
* *
46205649 CTAGTGGCTCTGCCA-TATATATCTGT-T
1 CTGGTGGCTCTGCCACAAT-TATCTGTAT
* *
46205676 CTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* **
46205704 CTGGTGACTCTGTTAC-ATTATCTGT-T
1 CTGGTGGCTCTGCCACAATTATCTGTAT
46205730 CTGG
1 CTGG
46205734 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.11
27 47 0.66
28 16 0.23
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:46211014 original size:28 final size:27
Alignment explanation
Indices: 46210945--46211047 Score: 100
Period size: 28 Copynumber: 3.7 Consensus size: 27
46210935 ATTGCATGAC
* *
46210945 TATGAGTGTGATTGGGCCTGAAGGGCTA
1 TATGAATGTGATTGGGCCTG-ATGGCTA
* *
46210973 TATGAAAGTTATTGGGCCTGATGAGCTA
1 TATGAATGTGATTGGGCCTGATG-GCTA
* *
46211001 TATGACTGTGATTGGGCAC-GATGGGTCA
1 TATGAATGTGATTGGGC-CTGATGGCT-A
*
46211029 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
46211048 AAAGGGGCCA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 5 0.08
28 55 0.90
29 1 0.02
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.30
Consensus pattern (27 bp):
TATGAATGTGATTGGGCCTGATGGCTA
Found at i:46213174 original size:43 final size:43
Alignment explanation
Indices: 46213126--46213217 Score: 148
Period size: 43 Copynumber: 2.1 Consensus size: 43
46213116 ACCCTCCCAC
* * *
46213126 TCTTTTTGTTCTTTCTTTTTTCCCTCCTTATTTCTTTATTATT
1 TCTTTTTGTTCTTTCTTTCTTCCCTCCCTATTGCTTTATTATT
*
46213169 TCTTTTTGTTCTTTCTTTCTTCCCTCCCTGTTGCTTTATTATT
1 TCTTTTTGTTCTTTCTTTCTTCCCTCCCTATTGCTTTATTATT
46213212 TCTTTT
1 TCTTTT
46213218 GCTTACTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.05, C:0.23, G:0.04, T:0.67
Consensus pattern (43 bp):
TCTTTTTGTTCTTTCTTTCTTCCCTCCCTATTGCTTTATTATT
Found at i:46222518 original size:42 final size:42
Alignment explanation
Indices: 46222451--46222592 Score: 158
Period size: 42 Copynumber: 3.4 Consensus size: 42
46222441 TTCCATGTCT
* * ** * * *
46222451 CAGACATGGTCTTACATGGGATCTCACATCAATGCCATATCT
1 CAGATATGGTCTTACACGAAATCTCATATCAACGCCATATCC
* * * *
46222493 CAGATATGGTCTTATACGAATTCTCATTTCGACGCCATATCC
1 CAGATATGGTCTTACACGAAATCTCATATCAACGCCATATCC
* * *
46222535 CAGACATGATCTTACACGAAATCTCATATCAACACCATATCC
1 CAGATATGGTCTTACACGAAATCTCATATCAACGCCATATCC
46222577 CAGATATGGTCTTACA
1 CAGATATGGTCTTACA
46222593 TGATAACTCA
Statistics
Matches: 80, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
CAGATATGGTCTTACACGAAATCTCATATCAACGCCATATCC
Found at i:46236951 original size:56 final size:57
Alignment explanation
Indices: 46236838--46236944 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 57
46236828 TATTGAGACA
*
46236838 AATTTGATGAGATTTTATTATTTTTCTTTCTTTAGGATGGAGTCAATCCTTAGTTAT
1 AATTTGATGAGATTTTATTATATTTCTTTCTTTAGGATGGAGTCAATCCTTAGTTAT
*
46236895 AATTTGATGAGATTTTATT-TATTTCTTTCTTTAGGATTGAGTCAATCCTT
1 AATTTGATGAGATTTTATTATATTTCTTTCTTTAGGATGGAGTCAATCCTT
46236945 GATTATAGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
56 29 0.60
57 19 0.40
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.51
Consensus pattern (57 bp):
AATTTGATGAGATTTTATTATATTTCTTTCTTTAGGATGGAGTCAATCCTTAGTTAT
Found at i:46242914 original size:40 final size:40
Alignment explanation
Indices: 46242861--46243061 Score: 271
Period size: 40 Copynumber: 5.0 Consensus size: 40
46242851 GATTGAACCA
* * * *
46242861 GATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGCCCG
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCG
46242901 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
46242941 GATATAATATCTCGCACAAATGCCTTCGGGGCTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
46242981 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * * *
46243021 GA-ACTAGTCACTAGCGCAAATGCCTTTGGGACTTAGCCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
46243061 G
1 G
46243062 TTATCCTCCA
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 143 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:46250965 original size:40 final size:40
Alignment explanation
Indices: 46250912--46251112 Score: 289
Period size: 40 Copynumber: 5.0 Consensus size: 40
46250902 GATTGAACCA
* * * *
46250912 GATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGCCCG
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
46250952 GATATATTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
46250992 GATATAGTATCTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
46251032 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
46251072 GA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
46251112 G
1 G
46251113 TTATCCTCCA
Statistics
Matches: 148, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 146 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:46258850 original size:12 final size:12
Alignment explanation
Indices: 46258835--46258860 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46258825 TACATGTTTA
46258835 ATAGAATGGCTG
1 ATAGAATGGCTG
46258847 ATAGAATGGCTG
1 ATAGAATGGCTG
46258859 AT
1 AT
46258861 GATATACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.27
Consensus pattern (12 bp):
ATAGAATGGCTG
Found at i:46267459 original size:17 final size:17
Alignment explanation
Indices: 46267433--46267484 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 17
46267423 GAAAAAAGAT
46267433 TAAA-ATTTTATAAATA
1 TAAATATTTTATAAATA
*
46267449 TAATTATTTTATTTAAAAATA
1 TAAATATTTTA--T--AAATA
46267470 TAAATATTTTATAAA
1 TAAATATTTTATAAA
46267485 AGGAATCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 3 0.10
17 9 0.31
19 2 0.07
21 15 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATATTTTATAAATA
Found at i:46267463 original size:21 final size:21
Alignment explanation
Indices: 46267439--46267481 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
46267429 AGATTAAAAT
* *
46267439 TTTATAAATATAATTATTTTA
1 TTTAAAAATATAAATATTTTA
46267460 TTTAAAAATATAAATATTTTA
1 TTTAAAAATATAAATATTTTA
46267481 T
1 T
46267482 AAAAGGAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTAAAAATATAAATATTTTA
Found at i:46270477 original size:4 final size:4
Alignment explanation
Indices: 46270470--46270510 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
46270460 TATATTTATA
46270470 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
46270511 TTGAGTTGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:46275135 original size:70 final size:70
Alignment explanation
Indices: 46275022--46275159 Score: 276
Period size: 70 Copynumber: 2.0 Consensus size: 70
46275012 AGCTAAGCAA
46275022 GGAAGATTTGGTTGAAAACTTCATCAACTCAGTTGAGAAGGAAGATGTTTGTGAAGTGTGTTAGC
1 GGAAGATTTGGTTGAAAACTTCATCAACTCAGTTGAGAAGGAAGATGTTTGTGAAGTGTGTTAGC
46275087 TAGTT
66 TAGTT
46275092 GGAAGATTTGGTTGAAAACTTCATCAACTCAGTTGAGAAGGAAGATGTTTGTGAAGTGTGTTAGC
1 GGAAGATTTGGTTGAAAACTTCATCAACTCAGTTGAGAAGGAAGATGTTTGTGAAGTGTGTTAGC
46275157 TAG
66 TAG
46275160 GAAAGCAGGC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.30, C:0.09, G:0.29, T:0.32
Consensus pattern (70 bp):
GGAAGATTTGGTTGAAAACTTCATCAACTCAGTTGAGAAGGAAGATGTTTGTGAAGTGTGTTAGC
TAGTT
Found at i:46278616 original size:15 final size:15
Alignment explanation
Indices: 46278590--46278632 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
46278580 AAATGTGTTA
*
46278590 TATATGATTTTATTGT
1 TATATTATTTTATT-T
46278606 T-TATTATTTTATTT
1 TATATTATTTTATTT
*
46278620 TATTTTATTTTAT
1 TATATTATTTTAT
46278633 GTATCTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 2 0.08
15 21 0.88
16 1 0.04
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (15 bp):
TATATTATTTTATTT
Found at i:46280007 original size:27 final size:27
Alignment explanation
Indices: 46279976--46280031 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
46279966 CATAGTTATG
*
46279976 TTTGGCAAACT-ATGTTCGCATAAGTGT
1 TTTGGCAAACTGA-GTTCACATAAGTGT
*
46280003 TTTGGCAAACTGAGTTCACATATGTGT
1 TTTGGCAAACTGAGTTCACATAAGTGT
46280030 TT
1 TT
46280032 GTTCAACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (27 bp):
TTTGGCAAACTGAGTTCACATAAGTGT
Found at i:46281522 original size:48 final size:48
Alignment explanation
Indices: 46281451--46281630 Score: 213
Period size: 48 Copynumber: 3.8 Consensus size: 48
46281441 TGATATGTGT
*
46281451 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* *** *
46281499 GCTAGTGTAAGACCATGTCTGGGACAGGGCATCGATG-TTGA-TATGTGTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG--GCCACATTATGAG-A
* * *
46281548 -CTAATGTAAGATCATGTCTGGGACATGGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* *
46281595 ACTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
46281631 AATTTACCCT
Statistics
Matches: 108, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
46 1 0.01
47 2 0.02
48 102 0.94
49 2 0.02
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:46281605 original size:96 final size:96
Alignment explanation
Indices: 46281441--46281628 Score: 304
Period size: 96 Copynumber: 2.0 Consensus size: 96
46281431 GACATTTGAG
* * * * *
46281441 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCTAGTG
1 TGATATGTGTACTAATGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAACTAGTG
46281506 TAAGACCATGTCTGGGACAGGGCATCGATGT
66 TAAGACCATGTCTGGGACAGGGCATCGATGT
*
46281537 TGATATGTGTACTAATGTAAGATCATGTCTGGGACATGGCATCAGCCACATTATGAGAACTAGTG
1 TGATATGTGTACTAATGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAACTAGTG
* *
46281602 TAAGACCATGTTTGGGACATGGCATCG
66 TAAGACCATGTCTGGGACAGGGCATCG
46281629 GCAATTTACC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 84 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (96 bp):
TGATATGTGTACTAATGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAACTAGTG
TAAGACCATGTCTGGGACAGGGCATCGATGT
Found at i:46284144 original size:15 final size:15
Alignment explanation
Indices: 46284088--46284150 Score: 72
Period size: 16 Copynumber: 4.1 Consensus size: 15
46284078 CGTTTGGTTC
46284088 ACTGTAATGGAATAAG
1 ACTGTAATGGAAT-AG
* *
46284104 GCTGTAATTGAATAG
1 ACTGTAATGGAATAG
*
46284119 AGCTATAATGGAATAG
1 A-CTGTAATGGAATAG
*
46284135 ACCGTAATGGAATAG
1 ACTGTAATGGAATAG
46284150 A
1 A
46284151 AATGTAACAG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
15 15 0.38
16 24 0.62
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:46284477 original size:57 final size:57
Alignment explanation
Indices: 46284362--46284486 Score: 132
Period size: 57 Copynumber: 2.2 Consensus size: 57
46284352 TTTTTATTAA
* * * **
46284362 AAAATAATAAATAATTTAATCATATTTTAACATAATTTTTACTAAATATAATTTAAT
1 AAAATAATATACAATTTAATAATATTTTAACATAATTTTTACTAAATATAATGAAAT
*
46284419 AAAATAATATACAATTTAATAATATTCTTAATATAATTATTATA-TAAAT-TAA-GAAAT
1 AAAATAATATACAATTTAATAATATT-TTAACATAATT-TT-TACTAAATATAATGAAAT
46284476 AATAAT-ATATA
1 AA-AATAATATA
46284487 GTATTATTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
57 33 0.57
58 16 0.28
59 7 0.12
60 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (57 bp):
AAAATAATATACAATTTAATAATATTTTAACATAATTTTTACTAAATATAATGAAAT
Found at i:46290348 original size:121 final size:122
Alignment explanation
Indices: 46290207--46290473 Score: 365
Period size: 121 Copynumber: 2.2 Consensus size: 122
46290197 AACAGAGGCC
* * * ** * *
46290207 GCCACAAAGGTTTTCCTTTACATTCAATACTCGCCACAAAGGCTTTCCTGTCTAGAGTTTTGCCA
1 GCCACAAAGGTTGTCCTTTACATTCAATACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCA
* *
46290272 CAAAAGCTAT-CATTATATCCAATACTCATCACAAAGGCTTTCCTATCCAGAGTTTT
66 CAAAAGCTATCCATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
*
46290328 GCCACAAAGGTTGTCCTTTACATTCAGTACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCA
1 GCCACAAAGGTTGTCCTTTACATTCAATACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCA
* * * * * *
46290393 CAGAGGCTATCCTTTATATCTAGTACTCACCAAAAAGGCTTTCCTATCCAGATTTTT
66 CAAAAGCTATCCATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
* *
46290450 CCCACAAAGGATGTCCTTTACATT
1 GCCACAAAGGTTGTCCTTTACATT
46290474 TAGTACTTGG
Statistics
Matches: 127, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
121 65 0.51
122 62 0.49
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (122 bp):
GCCACAAAGGTTGTCCTTTACATTCAATACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCA
CAAAAGCTATCCATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
Found at i:46290382 original size:61 final size:61
Alignment explanation
Indices: 46290207--46290480 Score: 284
Period size: 61 Copynumber: 4.5 Consensus size: 61
46290197 AACAGAGGCC
* * * * * * *
46290207 GCCACAAAGGTTTTCCTTTACATTCAATACTCGCCACAAAGGCTTTCCTGTCTAGAGTTTT
1 GCCACAAAGGCTATCCTTTACATTCAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
* * * * * * *
46290268 GCCACAAAAGCTAT-CATTATATCCAATACTCATCACAAAGGCTTTCCTATCCAGAGTTTT
1 GCCACAAAGGCTATCCTTTACATTCAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
* * * *
46290328 GCCACAAAGGTTGTCCTTTACATTCAGTACTCACCAAAAAGGCTTT-CAAGTCCAGAGTTAT
1 GCCACAAAGGCTATCCTTTACATTCAGTACTCACCAAAAAGGCTTTCCTA-TCCAGAGTTTT
* * *
46290389 GCCACAGAGGCTATCCTTTATA-TCTAGTACTCACCAAAAAGGCTTTCCTATCCAGATTTTT
1 GCCACAAAGGCTATCCTTTACATTC-AGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
* * * *
46290450 CCCACAAAGGATGTCCTTTACATTTAGTACT
1 GCCACAAAGGCTATCCTTTACATTCAGTACT
46290481 TGGTGAGGTT
Statistics
Matches: 174, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
60 54 0.31
61 117 0.67
62 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (61 bp):
GCCACAAAGGCTATCCTTTACATTCAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTTT
Found at i:46290466 original size:122 final size:121
Alignment explanation
Indices: 46290208--46290480 Score: 366
Period size: 122 Copynumber: 2.2 Consensus size: 121
46290198 ACAGAGGCCG
* * * * ** * *
46290208 CCACAAAGGTTTTCCTTTACATTCAATACTCGCCACAAAGGCTTTCCTGTCTAGAGTTTTGCCAC
1 CCACAAAGGTTGTCCTTTACATTCAGTACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCAC
* * *
46290273 AAAAGCTATCATTATATCCAATACTCATCACAAAGGCTTTCCTATCCAGAGTTTTG
66 AAAAGCTATCATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTTTC
46290329 CCACAAAGGTTGTCCTTTACATTCAGTACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCAC
1 CCACAAAGGTTGTCCTTTACATTCAGTACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCAC
* * * * * *
46290394 AGAGGCTATCCTTTATATCTAGTACTCACCAAAAAGGCTTTCCTATCCAGATTTTTC
66 AAAAGCTAT-CATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTTTC
* *
46290451 CCACAAAGGATGTCCTTTACATTTAGTACT
1 CCACAAAGGTTGTCCTTTACATTCAGTACT
46290481 TGGTGAGGTT
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
121 64 0.48
122 68 0.52
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (121 bp):
CCACAAAGGTTGTCCTTTACATTCAGTACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCCAC
AAAAGCTATCATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTTTC
Found at i:46293831 original size:58 final size:57
Alignment explanation
Indices: 46293710--46293818 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 57
46293700 TAGCCCACTT
*
46293710 GGCCCAATCTCATTTATATGGCCCATCAGGCCCAATTCACATTCATATGGCTCAGCA
1 GGCCCAATCTCATTTATATGGCCCATCAGGCCCAAATCACATTCATATGGCTCAGCA
* * *
46293767 GGCCCAAT-TCATATTCATATGGTCCATCAGGCCCAAATCACCTTTATATGGC
1 GGCCCAATCTCAT-TT-ATATGGCCCATCAGGCCCAAATCACATTCATATGGC
46293819 CCGTTAGGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 4 0.09
57 10 0.22
58 32 0.70
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.28
Consensus pattern (57 bp):
GGCCCAATCTCATTTATATGGCCCATCAGGCCCAAATCACATTCATATGGCTCAGCA
Found at i:46293839 original size:29 final size:29
Alignment explanation
Indices: 46293710--46293836 Score: 139
Period size: 29 Copynumber: 4.4 Consensus size: 29
46293700 TAGCCCACTT
*
46293710 GGCCC-AATCTCATTTATATGGCCCATCA
1 GGCCCAAATCACATTTATATGGCCCATCA
* * * *
46293738 GGCCCAATTCACATTCATATGGCTCAGCA
1 GGCCCAAATCACATTTATATGGCCCATCA
* * * *
46293767 GGCCCAATTCATATTCATATGGTCCATCA
1 GGCCCAAATCACATTTATATGGCCCATCA
* * *
46293796 GGCCCAAATCACCTTTATATGGCCCGTTA
1 GGCCCAAATCACATTTATATGGCCCATCA
46293825 GGCCCAAATCAC
1 GGCCCAAATCAC
46293837 CTTATATTCA
Statistics
Matches: 82, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
28 5 0.06
29 77 0.94
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
GGCCCAAATCACATTTATATGGCCCATCA
Found at i:46298818 original size:18 final size:19
Alignment explanation
Indices: 46298795--46298834 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
46298785 GACCCCTTGG
*
46298795 TGGTAGTTGAACACC-CCT
1 TGGTAGCTGAACACCACCT
46298813 TGGTAGCTGAACACCACCT
1 TGGTAGCTGAACACCACCT
46298832 TGG
1 TGG
46298835 CCCACTACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (19 bp):
TGGTAGCTGAACACCACCT
Found at i:46301475 original size:29 final size:28
Alignment explanation
Indices: 46301383--46301501 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 28
46301373 TACATACATG
* *
46301383 TATATGGCCCACTT-GGCCCAATCTCATT
1 TATATGGCCCA-TTAGGCCCAATCACCTT
* *
46301411 TATATGGCCCATCAGGCCCAAT-TCCTAT
1 TATATGGCCCATTAGGCCCAATCACCT-T
46301439 TCATATGGCCCATTAGGCCCAAATCACCTT
1 T-ATATGGCCCATTAGGCCC-AATCACCTT
* *
46301469 TACATGGCCCGTTAGGCCCAAATCACC-T
1 TATATGGCCCATTAGGCCC-AATCACCTT
46301497 TATAT
1 TATAT
46301502 TCACTCTCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
27 4 0.05
28 26 0.33
29 41 0.52
30 5 0.06
31 3 0.04
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACCTT
Found at i:46303779 original size:28 final size:33
Alignment explanation
Indices: 46303733--46303809 Score: 120
Period size: 33 Copynumber: 2.3 Consensus size: 33
46303723 TACACTTTGT
* *
46303733 TTGGTGTGTT-AGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGTTGA-TTAGATTAGCTCTTATGAGCA
46303766 TTGGTGTGTTGATTAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGATTAGATTAGCTCTTATGAGCA
46303799 TTGGTGTGTTG
1 TTGGTGTGTTG
46303810 GAGGGATTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
33 40 0.98
34 1 0.02
ACGTcount: A:0.17, C:0.06, G:0.31, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGATTAGATTAGCTCTTATGAGCA
Found at i:46304302 original size:11 final size:11
Alignment explanation
Indices: 46304270--46304303 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
46304260 ATATTATACA
46304270 AATGAAATGGT
1 AATGAAATGGT
*
46304281 AA-GAAAAGGT
1 AATGAAATGGT
46304291 AATGAAATGGT
1 AATGAAATGGT
46304302 AA
1 AA
46304304 GTTCATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (11 bp):
AATGAAATGGT
Found at i:46306559 original size:26 final size:25
Alignment explanation
Indices: 46306530--46306610 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 25
46306520 TATCTGAAGC
46306530 TCCTGATTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTT-GTGAGCT
* *** *
46306556 TCCTAATTAAAAATTCTTTGTGAACT
1 TCCTGATTAAAGGCTC-TTGTGAGCT
* *
46306582 TCCTGATT-ATGGCTCTTATGAGCT
1 TCCTGATTAAAGGCTCTTGTGAGCT
46306606 TCCTG
1 TCCTG
46306611 TTATTTAGCC
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
24 12 0.29
25 3 0.07
26 25 0.60
27 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (25 bp):
TCCTGATTAAAGGCTCTTGTGAGCT
Found at i:46306670 original size:26 final size:26
Alignment explanation
Indices: 46306639--46306706 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
46306629 CTTCTTGGTA
46306639 GGCTCTTTGTGAGCTTCCCAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAT
46306665 GGCTCTTTGTGAGCTTCCCAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAT
*
46306691 GGCTCTTTGCGAGCTT
1 GGCTCTTTGTGAGCTT
46306707 ACTGTTATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCCAATTAAT
Found at i:46310152 original size:46 final size:48
Alignment explanation
Indices: 46310064--46310237 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 48
46310054 GTAAGGTGTT
* * *
46310064 GATGCCATGTCCCAGATATGGTCTTACACTGAC-TATCATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTCG-AGGCC
* *
46310112 GATG-CATGTCCCAGACAT-GTCTTATACTGGCTTACGTCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCC
* * * * *
46310158 GATG-CATGTCCTAGACAT-GTCTTATACTAGCTCT-CGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACGTCTCGAGGCC
*
46310204 GATGCCATATCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
46310238 CTCATAATGT
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 62 0.58
47 28 0.26
48 16 0.15
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCC
Found at i:46328845 original size:43 final size:43
Alignment explanation
Indices: 46328798--46329071 Score: 297
Period size: 43 Copynumber: 6.4 Consensus size: 43
46328788 GTTTTGTTGA
* * * *
46328798 AAAAAACGCTC-CTAAAGGCCAGGACTTTTAGCAGCGCTTATAT
1 AAAAAACGC-CGCTAAAGACCAGGACTTATAGCGGCGCTTTTAT
* * *
46328841 AAAAAATGCCACTAAAGACCAGGACTTATAGCGGCGCTTTTTT
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTAT
* *
46328884 AAAAAACGCCGCTAAAGACCAGGACTTATTGCGGCGCTTTTCT
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTAT
* * *
46328927 AATAAACGCCGCTAAAGACCATGACTTATAGCGGCACTTTCT-T
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCGGCGCTTT-TAT
* * *
46328970 AAAAAACGCCGCTAAAGACCATGACTTATAG-AGCACTTTCT-T
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCGGCGCTTT-TAT
* * * *
46329012 AGAAAACGCCGCTAAAGACCATGACTTCTAGCGGTGCTTTCT-T
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCGGCGCTTT-TAT
46329055 AAAAAAACGCCGCTAAA
1 -AAAAAACGCCGCTAAA
46329072 AGTCTTCTTC
Statistics
Matches: 205, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
42 40 0.20
43 149 0.73
44 16 0.08
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTAT
Found at i:46329044 original size:85 final size:85
Alignment explanation
Indices: 46328798--46329071 Score: 329
Period size: 86 Copynumber: 3.2 Consensus size: 85
46328788 GTTTTGTTGA
* * * * * * *
46328798 AAAAAACGCTC-CTAAAGGCCAGGACTTTTAGCAGCGCTTATATAAAAAATGCCACTAAAGACCA
1 AAAAAACGC-CGCTAAAGACCAGGACTTATAGCAGCACTTTTCT-AAAAACGCCGCTAAAGACCA
* *
46328862 GGACTTATAGCGGCGCTTTTTT
64 TGACTTATAGCGGCGCTTTCTT
* * *
46328884 AAAAAACGCCGCTAAAGACCAGGACTTATTGCGGCGCTTTTCTAATAAACGCCGCTAAAGACCAT
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCAGCACTTTTCTAA-AAACGCCGCTAAAGACCAT
*
46328949 GACTTATAGCGGCACTTTCTT
65 GACTTATAGCGGCGCTTTCTT
*
46328970 AAAAAACGCCGCTAAAGACCATGACTTATAG-AGCAC-TTTCTTAGAAAACGCCGCTAAAGACCA
1 AAAAAACGCCGCTAAAGACCAGGACTTATAGCAGCACTTTTC-TA-AAAACGCCGCTAAAGACCA
* *
46329033 TGACTTCTAGCGGTGCTTTCTT
64 TGACTTATAGCGGCGCTTTCTT
46329055 AAAAAAACGCCGCTAAA
1 -AAAAAACGCCGCTAAA
46329072 AGTCTTCTTC
Statistics
Matches: 165, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
84 4 0.02
85 45 0.27
86 116 0.70
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (85 bp):
AAAAAACGCCGCTAAAGACCAGGACTTATAGCAGCACTTTTCTAAAAACGCCGCTAAAGACCATG
ACTTATAGCGGCGCTTTCTT
Found at i:46329127 original size:43 final size:43
Alignment explanation
Indices: 46329056--46329156 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
46329046 TGCTTTCTTA
* * * *
46329056 AAAAAACGCCGCTAAAAGTCTTCTTCTTTAGTGGCG-TATTTT
1 AAAAAACGCCACTAAAAGTCCTCGTCTTTAGCGGCGCTATTTT
* * *
46329098 AAAAAAGCGCCACTAAAAGTCCTGGTCTTTAGCGGTGCTTTTTT
1 AAAAAA-CGCCACTAAAAGTCCTCGTCTTTAGCGGCGCTATTTT
*
46329142 TAAAAACGCCACTAA
1 AAAAAACGCCACTAA
46329157 TTTCCCCAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 6 0.12
43 33 0.67
44 10 0.20
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (43 bp):
AAAAAACGCCACTAAAAGTCCTCGTCTTTAGCGGCGCTATTTT
Found at i:46334701 original size:9 final size:9
Alignment explanation
Indices: 46334689--46334831 Score: 142
Period size: 9 Copynumber: 15.2 Consensus size: 9
46334679 TATGTAAGTT
*
46334689 GTTATGTAC
1 GTTATGTAA
*
46334698 GTTATGTGA
1 GTTATGTAA
46334707 GTTATGTAA
1 GTTATGTAA
*
46334716 ATTATGTAA
1 GTTATGTAA
46334725 GTTATGTAA
1 GTTATGTAA
46334734 GTTGTTATGTAA
1 ---GTTATGTAA
*
46334746 ATTATGTAA
1 GTTATGTAA
*
46334755 GTTATGTGA
1 GTTATGTAA
46334764 GTTATGTAA
1 GTTATGTAA
46334773 GTTGTTATGTAA
1 ---GTTATGTAA
*
46334785 ATTATGTAA
1 GTTATGTAA
* *
46334794 GTTATATGA
1 GTTATGTAA
46334803 GTTATGTAA
1 GTTATGTAA
46334812 GTTATGTAA
1 GTTATGTAA
* *
46334821 TTTATTTAA
1 GTTATGTAA
46334830 GT
1 GT
46334832 AATGATCAAT
Statistics
Matches: 110, Mismatches: 18, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
9 92 0.84
12 18 0.16
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
GTTATGTAA
Found at i:46334725 original size:39 final size:37
Alignment explanation
Indices: 46334678--46334831 Score: 123
Period size: 39 Copynumber: 4.3 Consensus size: 37
46334668 CATGTATTAG
46334678 TTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAG-TGTTATGTA-GTTATGTGAGTTATGTAAA
*
46334717 TTATGTAA--GTTATGTA---A-GT-TGTTATGTAAA
1 TTATGTAAGTGTTATGTAGTTATGTGAGTTATGTAAA
*
46334747 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGT-AGTTATGT--G-AGTTATGTAAA
* *
46334786 TTATGTAAGT-TATATG-AGTTATGTAAGTTATGTAAT
1 TTATGTAAGTGT-TATGTAGTTATGTGAGTTATGTAAA
*
46334822 TTATTTAAGT
1 TTATGTAAGT
46334832 AATGATCAAT
Statistics
Matches: 98, Mismatches: 5, Indels: 27
0.75 0.04 0.21
Matches are distributed among these distances:
30 25 0.26
31 3 0.03
32 1 0.01
34 1 0.01
35 2 0.02
36 26 0.27
39 35 0.36
40 1 0.01
41 4 0.04
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (37 bp):
TTATGTAAGTGTTATGTAGTTATGTGAGTTATGTAAA
Found at i:46334742 original size:48 final size:48
Alignment explanation
Indices: 46334676--46334831 Score: 188
Period size: 48 Copynumber: 3.2 Consensus size: 48
46334666 TACATGTATT
* *
46334676 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTA
1 AGTTATGTAAGTTGTTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
* * *
46334724 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTA
1 AGTTATGTAAGTTGTTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
* * ** *
46334772 AGTTGT-TATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTA
1 AGTTATGTAAGT-TGTTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
* *
46334820 ATTTATTTAAGT
1 AGTTATGTAAGT
46334832 AATGATCAAT
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
47 4 0.04
48 82 0.91
49 4 0.04
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (48 bp):
AGTTATGTAAGTTGTTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
Found at i:46335441 original size:240 final size:233
Alignment explanation
Indices: 46335024--46335497 Score: 815
Period size: 240 Copynumber: 2.0 Consensus size: 233
46335014 AAATATTCAA
46335024 TAGTAAATGAGCTCGATAGAACCTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTG
1 TAGTAAATGAGCTCGATAGAACCTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTG
46335089 GCATTGTTACACCTAGGGAGGATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCC
66 GCATTGTTACACCTAGGGAGGATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCC
* *
46335154 TATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAAG
131 TATATACTTTGAACCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTATTGTAAG
46335219 TTTAATGGACAAGCAAGCTACATGGTAATAAAATTAAT
196 TTTAATGGACAAGCAAGCTACATGGTAATAAAATTAAT
*
46335257 TAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTG
1 TAGTAAATGAGCTCGATAGAACCTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTG
*
46335322 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTT
66 GCATTGTTACACCTAGGGAGG-------ATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTT
*
46335387 TCCAGCCTATATACTTTGAACCTTTAAAATATTTAAAATAAGGTCT-GTGAGAAGGTCAGCTATT
124 TCCAGCCTATATACTTTGAACCTTTAAAATATTTAAAATAAGGT-TGGAGAGAAGGTCAGCTATT
*
46335451 ATTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAATTAAT
188 ATTGTAAGTTTAATGGACAAGCAAGCTACATGGTAATAAAATTAAT
46335497 T
1 T
46335498 CATACTTATT
Statistics
Matches: 227, Mismatches: 6, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
233 84 0.37
240 142 0.63
241 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (233 bp):
TAGTAAATGAGCTCGATAGAACCTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTG
GCATTGTTACACCTAGGGAGGATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCC
TATATACTTTGAACCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTATTGTAAG
TTTAATGGACAAGCAAGCTACATGGTAATAAAATTAAT
Found at i:46339928 original size:28 final size:27
Alignment explanation
Indices: 46339876--46339928 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
46339866 GGTCTCTCTA
*
46339876 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
46339903 ATATACTTTAAATTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
46339929 AGTCTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.55
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:46340354 original size:21 final size:21
Alignment explanation
Indices: 46340330--46340369 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
46340320 GGGTTTTATG
*
46340330 GTTTTGGATTGAAGATTTAAT
1 GTTTAGGATTGAAGATTTAAT
* *
46340351 GTTTAGGGTTTAAGATTTA
1 GTTTAGGATTGAAGATTTA
46340370 CAATTTAAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (21 bp):
GTTTAGGATTGAAGATTTAAT
Found at i:46340759 original size:40 final size:40
Alignment explanation
Indices: 46340695--46340791 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
46340685 AGCGCTTACG
*
46340695 TAAAGACGCCGCT-ATAGCTCGATCTAT-AGCGGCGCTTCTC
1 TAAAAACGCCGCTAAT-GCTCGATCT-TCAGCGGCGCTTCTC
* * *
46340735 TAAAAACGCCGCTAATGCTTGATCTTCAGCGGCGTTTTTC
1 TAAAAACGCCGCTAATGCTCGATCTTCAGCGGCGCTTCTC
* * *
46340775 GAAAAGCGTCGCTAATG
1 TAAAAACGCCGCTAATG
46340792 AACTGAATCT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 45 0.94
41 2 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TAAAAACGCCGCTAATGCTCGATCTTCAGCGGCGCTTCTC
Found at i:46361402 original size:21 final size:21
Alignment explanation
Indices: 46361378--46361420 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
46361368 AAAATTTAAA
46361378 AAAACATAA-TAAAATATTTTT
1 AAAA-ATAAGTAAAATATTTTT
* *
46361399 AAAATTAAGTATAATATTTTT
1 AAAAATAAGTAAAATATTTTT
46361420 A
1 A
46361421 TTAAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAAATAAGTAAAATATTTTT
Found at i:46361669 original size:25 final size:26
Alignment explanation
Indices: 46361631--46361679 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
46361621 AAATAGATAT
*
46361631 AATATGAATTTATTTTATA-ATGTGA
1 AATATGAATTTATTTAATACATGTGA
46361656 AATAT-AATTATATTTAATACATGT
1 AATATGAATT-TATTTAATACATGT
46361680 TATATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 13 0.62
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (26 bp):
AATATGAATTTATTTAATACATGTGA
Found at i:46361961 original size:146 final size:145
Alignment explanation
Indices: 46361794--46362082 Score: 343
Period size: 146 Copynumber: 2.0 Consensus size: 145
46361784 ACATTATAAT
*
46361794 ATATATAATTAAGGTAGATTATT-A-AATATATATATCCCTATATA-CAACTATAT-TATTATAA
1 ATATATAATTAAGGTAGATTATTAATAATATATA-AT-CATATATATC-A-TA-ATGTATTATAA
* * * * * *
46361855 TGTATATTTTTATATTCATGATATGTAAGCTTAAACACTATACTTTAACTAACTTTATAACAAAT
61 TGTACATTTTTATATTAATCATATGTAACCTTAAACACTAAACTGTAACTAACTTTATAACAAAT
*
46361920 TATAATATATACAATTAGAA
126 TATAAAATATACAATTAGAA
* * * *
46361940 ATATATAGTTAAGGTATATTATTAATAATATGTAATCATATGTATCATAATGGTATTATAATGTA
1 ATATATAATTAAGGTAGATTATTAATAATATATAATCATATATATCATAAT-GTATTATAATGTA
* * * * *
46362005 CATTTTTATATTAATCATATGTAACCTTAAACCCTAAAGTGTAACTAACTTTATGATAGATTATA
65 CATTTTTATATTAATCATATGTAACCTTAAACACTAAACTGTAACTAACTTTATAACAAATTATA
46362070 AAATATACAATTA
130 AAATATACAATTA
46362083 ACATGAGTTA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
144 2 0.02
145 2 0.02
146 106 0.88
147 4 0.03
148 7 0.06
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (145 bp):
ATATATAATTAAGGTAGATTATTAATAATATATAATCATATATATCATAATGTATTATAATGTAC
ATTTTTATATTAATCATATGTAACCTTAAACACTAAACTGTAACTAACTTTATAACAAATTATAA
AATATACAATTAGAA
Found at i:46364911 original size:37 final size:37
Alignment explanation
Indices: 46364856--46364928 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
46364846 CTTTAGCTCA
46364856 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
46364893 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
46364929 AGAATATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:46365136 original size:48 final size:48
Alignment explanation
Indices: 46365082--46365213 Score: 210
Period size: 48 Copynumber: 2.7 Consensus size: 48
46365072 ATCGCCTAAT
46365082 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
46365130 TATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* * *
46365178 TGTTTCACATTAGCCATTCGGCCTTATCACACATAT
1 TATTTCACACTAGCCATTCGGCTTTA-C-CACATAT
46365214 GCATGTTCAC
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
48 70 0.90
49 1 0.01
50 7 0.09
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
Found at i:46365305 original size:47 final size:47
Alignment explanation
Indices: 46365182--46365307 Score: 207
Period size: 47 Copynumber: 2.7 Consensus size: 47
46365172 CATACATGTT
* *
46365182 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
46365229 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCC
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
46365276 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
46365308 ACACATAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:46369779 original size:99 final size:94
Alignment explanation
Indices: 46369604--46369830 Score: 258
Period size: 95 Copynumber: 2.4 Consensus size: 94
46369594 ATGGTACGCA
* * ** **
46369604 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAACCTGCACTTA
*
46369669 GTACTGCACACATGACCTAACCATCTGATACACG
66 GTACT-CACACAT-A-C--ACCATCCGATACACG
* * *
46369703 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAACCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAACCTGCACT
** *
46369768 TAGTACT-ACACATACATTATCCGGTACACG
64 TAGTACTCACACATACACCATCCGATACACG
*
46369798 TAGTAGCCTGCACTTATTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
46369831 TCACAATAGA
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
94 1 0.01
95 41 0.37
97 1 0.01
98 1 0.01
99 35 0.32
100 3 0.03
101 29 0.26
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (94 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAACCTGCACTTA
GTACTCACACATACACCATCCGATACACG
Found at i:46373878 original size:25 final size:26
Alignment explanation
Indices: 46373828--46373880 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
46373818 GTAATTTTGC
*
46373828 AAAAATATGAAATATGAACTGAATTG
1 AAAAATATGAAATATGAAATGAATTG
* *
46373854 AAAAATA-GAAATATTAAATGGATTG
1 AAAAATATGAAATATGAAATGAATTG
46373879 AA
1 AA
46373881 TTTGTCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.57, C:0.02, G:0.15, T:0.26
Consensus pattern (26 bp):
AAAAATATGAAATATGAAATGAATTG
Found at i:46375681 original size:33 final size:33
Alignment explanation
Indices: 46375625--46375702 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
46375615 CAAGGCCCTG
*
46375625 CTATGGTCTT-TTATTCACATGCCATAACCGAA
1 CTATGGTCTTATTATTCACATGCCATAACCCAA
* * * *
46375657 TTATGGTCTTATTATTCGA-TTGCCATAGCCCAG
1 CTATGGTCTTATTATTC-ACATGCCATAACCCAA
46375690 CTATGGTCTTATT
1 CTATGGTCTTATT
46375703 TGGCAACTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 9 0.24
33 28 0.74
34 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (33 bp):
CTATGGTCTTATTATTCACATGCCATAACCCAA
Found at i:46379093 original size:55 final size:54
Alignment explanation
Indices: 46378985--46379192 Score: 233
Period size: 55 Copynumber: 3.8 Consensus size: 54
46378975 ATTAAGGTTT
* * *
46378985 AAGGATACCATGTAAGACCATGCCAAGAAATGGAAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCTATAAGGC
* ** * *
46379040 AAGGAAATTATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * * *
46379095 AAAGG-TCCCATGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* *
46379148 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
46379193 TCAAAAGAAT
Statistics
Matches: 126, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 44 0.35
54 8 0.06
55 66 0.52
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:46379191 original size:108 final size:110
Alignment explanation
Indices: 46378992--46379192 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
46378982 TTTAAGGATA
**
46378992 CCATGTAAGACCATGCCAAGAAATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATTATGTAAGA
1 CCATGTAAGACCATGCCAAGAAATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
46379057 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** * * *
46379102 CCATGTATGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGAAATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
46379164 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
46379193 TCAAAAGAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGAAATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:46379452 original size:16 final size:16
Alignment explanation
Indices: 46379431--46379461 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46379421 ATAAATTTGA
46379431 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
46379447 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
46379462 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:46391169 original size:48 final size:48
Alignment explanation
Indices: 46391050--46391369 Score: 265
Period size: 48 Copynumber: 6.6 Consensus size: 48
46391040 ATACTAGGGT
* * * *
46391050 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGGCACCAAT-A
1 TATGAGAGCCTGTGTAAGACCATGTTTGGGACATGGCATCGG---CATTGA
* * * * * *
46391100 TATGGGAGCCAGTGTCAGACCATGTTTGGAACATGGCATCGGTATTTA
1 TATGAGAGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * *
46391148 TATGAGAGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGA
1 TATGAGAGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * * *
46391196 TATGTAG-G-CTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
1 TATG-AGAGCCT-GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * * * *
46391244 TATGTG-GGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGA
1 TATGAGAGCCT-GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * * *
46391292 TATGTG-GGCTAGTATAAGACCATGTTTGGAACATGGCAAT-GGCATTGATA
1 TATGAGAGCCT-GTGTAAGACCATGTTTGGGACATGGC-ATCGGCATTG--A
*
46391342 TATGAGAGCCAGTGTAAGACCATGTTTG
1 TATGAGAGCCTGTGTAAGACCATGTTTG
46391370 AAACATGACA
Statistics
Matches: 231, Mismatches: 31, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
47 6 0.03
48 159 0.69
49 4 0.02
50 60 0.26
51 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TATGAGAGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
Found at i:46391247 original size:96 final size:96
Alignment explanation
Indices: 46391050--46391369 Score: 367
Period size: 96 Copynumber: 3.3 Consensus size: 96
46391040 ATACTAGGGT
* * * *
46391050 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGGCACCAAT-ATATG-GGAGCCAGT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-G-ACC-TTGATATGTGG-GCTAGT
* * * *
46391113 GTCAGACCATGTTTGGAACATGGCATCGGTATTTA
62 GTAAGACCATGTTTGGAACATGGCATTGGCATTGA
* * *
46391148 TATGAGAGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGATATGTAGGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTGATATGTGGGCTAGTGTAA
* * * *
46391213 GACCATGTCTGGGACATGGCATTGGCCTCGA
66 GACCATGTTTGGAACATGGCATTGGCATTGA
* * * * *
46391244 TATGTGGGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCCTCGATATGTGGGCTAGTATA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGA-CCTTGATATGTGGGCTAGTGTA
*
46391308 AGACCATGTTTGGAACATGGCAATGGCATTGATA
65 AGACCATGTTTGGAACATGGCATTGGCATTG--A
46391342 TATGAGAGCCAGTGTAAGACCATGTTTG
1 TATGAGAGCCAGTGTAAGACCATGTTTG
46391370 AAACATGACA
Statistics
Matches: 186, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
95 2 0.01
96 120 0.65
97 2 0.01
98 62 0.33
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTGATATGTGGGCTAGTGTAA
GACCATGTTTGGAACATGGCATTGGCATTGA
Found at i:46391312 original size:144 final size:148
Alignment explanation
Indices: 46391050--46391381 Score: 354
Period size: 144 Copynumber: 2.3 Consensus size: 148
46391040 ATACTAGGGT
* *
46391050 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGGCACCAATATATGGGAGCCAGTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCACCAATATATGGGAGCCAGTGT
* * * ** * *
46391115 CAGACCATGTTTGGAACATGGCATCGGTATTTATATGAGAGCCTGTGTAAGACCATGTCTGGGAC
66 AAGACCATGTTTGGAACATGGCATCAGCATCGATATGAGAGCCTGTATAAGACCATGTCTGGAAC
*
46391180 ATGGC-ATCGACCTTGATA
131 ATGGCAAT-GACATTGATA
* * * * * * *
46391198 TGT-AG-GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGC-CTCGATATGT-GG-GCTAGTG
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCAC-CAATATATGGGAGCCAGTG
* * * * *
46391258 TAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTG-GGCTAGTATAAGACCATGTTTGGA
65 TAAGACCATGTTTGGAACATGGCATCAGCATCGATATGAGAGCCT-GTATAAGACCATGTCTGGA
*
46391322 ACATGGCAATGGCATTGATA
129 ACATGGCAATGACATTGATA
* **
46391342 TATGAGAGCCAGTGTAAGACCATGTTTGAAACATGACATC
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATC
46391382 AGCATCTTAC
Statistics
Matches: 149, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
143 3 0.02
144 71 0.48
145 7 0.05
146 65 0.44
147 1 0.01
148 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (148 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCACCAATATATGGGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCAGCATCGATATGAGAGCCTGTATAAGACCATGTCTGGAAC
ATGGCAATGACATTGATA
Found at i:46402071 original size:48 final size:48
Alignment explanation
Indices: 46401956--46402242 Score: 315
Period size: 48 Copynumber: 5.9 Consensus size: 48
46401946 ATACTAGGGT
* *
46401956 TATGTGAGCCATTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TG-A
* * * * * *
46402006 TATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGTATTTA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* *
46402054 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * *
46402102 TATTTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * *
46402150 TATGTGGGCTAGTGTAAGACCATGTCTGGGACATTGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * *
46402198 TATGTGGGCTAGTGTAAGGCCATG-CTTGGAGCATGACATCGGCAT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGA-CATGGCATCGGCAT
46402243 CTTACCCTTT
Statistics
Matches: 208, Mismatches: 28, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
47 5 0.02
48 164 0.79
50 39 0.19
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
Found at i:46405783 original size:19 final size:20
Alignment explanation
Indices: 46405742--46405784 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
46405732 TTTTGTAAAG
* *
46405742 TTTGTAAAATAAATGGTACT
1 TTTGTAAAATAAATGGAAAT
*
46405762 TTTGTGAAAT-AATGGAAAT
1 TTTGTAAAATAAATGGAAAT
46405781 TTTG
1 TTTG
46405785 GGTTGCTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAAATGGAAAT
Found at i:46405893 original size:30 final size:31
Alignment explanation
Indices: 46405859--46405917 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
46405849 ATTTTCAAGC
*
46405859 CTAGGGGTAAAATGGTCATTTTGT-AAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTCAAAAGT
*
46405889 CTAGGGGCAAAATGGTTATTTTGTCAAAA
1 CTAGGGGCAAAATGGTCATTTTGTCAAAA
46405918 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (31 bp):
CTAGGGGCAAAATGGTCATTTTGTCAAAAGT
Found at i:46417434 original size:40 final size:41
Alignment explanation
Indices: 46417384--46417527 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 41
46417374 ACTACTCACT
*
46417384 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCA
* * *
46417424 CAATTGCCTTCGGGACTTAGCCTGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCA
* * **
46417464 CAAATGCCTTCGGGACTTAGCCCGGATT--AGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCA
* *
46417503 CAGATGCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
46417528 TTTTCATCCA
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 30 0.33
40 59 0.65
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCA
Found at i:46429081 original size:39 final size:39
Alignment explanation
Indices: 46429006--46429261 Score: 318
Period size: 39 Copynumber: 6.6 Consensus size: 39
46428996 AGGATTTTAA
* * * *
46429006 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
*
46429044 CCGGGTTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
46429083 CCGGGTTAAGTCCCAAAGGCATTCGTACTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * * *
46429122 CCGGGTTAAGTCCCAAAGGCATTCGTGTTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
46429161 CCGCGCTAAGTCTCGAAGGCATTCGTGCTAATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
46429200 CCGCGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
46429239 CCTGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
46429262 TGGGTTGGAA
Statistics
Matches: 193, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
38 19 0.10
39 170 0.88
40 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:46437155 original size:38 final size:40
Alignment explanation
Indices: 46437105--46437329 Score: 236
Period size: 39 Copynumber: 5.8 Consensus size: 40
46437095 GATATTTGAG
* * *
46437105 GATTT-TAACCGGGCTAAGACCC-ACAGGCCTT-GTG-TGA
1 GATTTATATCCGGGCTAAGTCCCGA-AGGCATTCGTGCTGA
*
46437142 GATTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGA
1 GATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA
* *
46437182 TA-TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTG-
1 GATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA
* * *
46437220 G-TATTATATCCGGGCTAAGTCTCAAATGCATTCGTGCTGA
1 GAT-TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA
* *
46437260 TA-TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCT--
1 GATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA
* *
46437297 GATGTTATATCCGGGATAAGTTCCGAAGGCATT
1 GAT-TTATATCCGGGCTAAGTCCCGAAGGCATT
46437330 TGGGTTGGAA
Statistics
Matches: 161, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
37 6 0.04
38 20 0.12
39 131 0.81
40 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
GATTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA
Found at i:46437188 original size:39 final size:39
Alignment explanation
Indices: 46437145--46437329 Score: 280
Period size: 39 Copynumber: 4.7 Consensus size: 39
46437135 TGTGTGAGAT
*
46437145 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
46437184 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
46437223 TTATATCCGGGCTAAGTCTCAAATGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
46437262 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
46437301 TTATATCCGGGATAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
46437330 TGGGTTGGAA
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:46438635 original size:49 final size:49
Alignment explanation
Indices: 46438545--46438682 Score: 152
Period size: 49 Copynumber: 2.8 Consensus size: 49
46438535 TAACATTGGT
* ** *
46438545 TAAGATGCTGATGCCATGTCCCAGGCATGGTCTTACACTGGCTTTCATATA
1 TAAG-TGCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCATATA
*
46438596 GTAAG-GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTA
1 -TAAGTGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATA
** * * *
46438645 TCGGTGTCGATGTCATGTCCCAAACAAGTCTTACACTG
1 TAAGTGCCGATGCCATGTCCCAAACAGGTCTTACACTG
46438683 ACACATTACA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.03
49 51 0.68
50 18 0.24
52 4 0.05
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
TAAGTGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATA
Found at i:46438877 original size:94 final size:94
Alignment explanation
Indices: 46438702--46438877 Score: 205
Period size: 94 Copynumber: 1.9 Consensus size: 94
46438692 AAGCTGGCGC
** *
46438702 CATGTCCCAGACATGTCTTACACTAGCTCTTGTCTTAATGCCGATGCATGTCCAAGACTTGTCTT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCCGATGCATGTCCAAGACATGTCTT
** *
46438767 ACACTAGGTTAAATATCTCGAGGTTGATG
66 ACACTAACTCAAATATCTCGAGGTTGATG
* * * *
46438796 CATG-CCCTAGACATGTCTTACACTGGCTCTCATAC-T-ATGGCTGATGCGTGTCCCAGACATGT
1 CATGTCCC-AGACATGTCTTACACTAGCTCTCAT-CTTAAT-GCCGATGCATGTCCAAGACATGT
*
46438858 CTTACACTAACTCACATATC
63 CTTACACTAACTCAAATATC
46438878 ATTCATTATC
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
93 5 0.07
94 62 0.91
95 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCCGATGCATGTCCAAGACATGTCTT
ACACTAACTCAAATATCTCGAGGTTGATG
Found at i:46441701 original size:18 final size:18
Alignment explanation
Indices: 46441678--46441713 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
46441668 TCCTTGGGTG
46441678 ATAGTCTATTATCAACTC
1 ATAGTCTATTATCAACTC
*
46441696 ATAGTCTTTTATCAACTC
1 ATAGTCTATTATCAACTC
46441714 CAACCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42
Consensus pattern (18 bp):
ATAGTCTATTATCAACTC
Found at i:46444265 original size:29 final size:29
Alignment explanation
Indices: 46444215--46444301 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
46444205 GCCCAGTTGG
* *
46444215 CCCAA-TCTCATTTATATGGCCCATCAGA
1 CCCAATTCACATTAATATGGCCCATCAGA
46444243 CCCAATTCACATTAATATGGCCCATCACG-
1 CCCAATTCACATTAATATGGCCCATCA-GA
* * *
46444272 CCCAATTCATATTCATATGGCCCATTAGA
1 CCCAATTCACATTAATATGGCCCATCAGA
46444301 C
1 C
46444302 TGAAATCACC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 6 0.12
29 44 0.86
30 1 0.02
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (29 bp):
CCCAATTCACATTAATATGGCCCATCAGA
Found at i:46444318 original size:29 final size:28
Alignment explanation
Indices: 46444226--46444346 Score: 100
Period size: 29 Copynumber: 4.2 Consensus size: 28
46444216 CCAATCTCAT
* * *
46444226 TTATATGGCCCATCAGACCCAATTCACA
1 TTATATGGCCCATTAGACCCAAATCACC
* * **
46444254 TTAATATGGCCCATCACG-CCCAATTCATA
1 TT-ATATGGCCCATTA-GACCCAAATCACC
**
46444283 TTCATATGGCCCATTAGACTGAAATCACC
1 TT-ATATGGCCCATTAGACCCAAATCACC
* *
46444312 TTTATATGGCCCGTTAGGCCCAAATCACC
1 -TTATATGGCCCATTAGACCCAAATCACC
46444341 TTATAT
1 TTATAT
46444347 TTACGCTCAC
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
28 9 0.12
29 65 0.84
30 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.29
Consensus pattern (28 bp):
TTATATGGCCCATTAGACCCAAATCACC
Found at i:46444333 original size:58 final size:57
Alignment explanation
Indices: 46444200--46444334 Score: 148
Period size: 58 Copynumber: 2.4 Consensus size: 57
46444190 ACATACATGC
*
46444200 ATATGGCCCAGTT-GGCCCAATCTCATTTATATGGCCCATCAGACCCAATTCACATTA
1 ATATGGCCC-GTTAGGCCCAATCTCATTTATATGGCCCATCAGACCCAAATCACATTA
* * * * ** * *
46444257 ATATGGCCCATCACGCCCAAT-TCATATTCATATGGCCCATTAGACTGAAATCACCTTT
1 ATATGGCCCGTTAGGCCCAATCTCAT-TT-ATATGGCCCATCAGACCCAAATCACATTA
46444315 ATATGGCCCGTTAGGCCCAA
1 ATATGGCCCGTTAGGCCCAA
46444335 ATCACCTTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
56 5 0.08
57 18 0.29
58 40 0.63
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
ATATGGCCCGTTAGGCCCAATCTCATTTATATGGCCCATCAGACCCAAATCACATTA
Found at i:46451589 original size:29 final size:29
Alignment explanation
Indices: 46451518--46451625 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
46451508 ACCCTTACAT
* *
46451518 ACATGCATATGGCCCA-CTTGGCCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
** *
46451546 TTATTTATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
46451575 ACATTCATATGGCCCATCAAGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
46451604 ATATTCATATGGCCCATTAGGC
1 ACATTCATATGGCCCATCAGGC
46451626 TGAAATCACC
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:46451642 original size:29 final size:28
Alignment explanation
Indices: 46451550--46451670 Score: 98
Period size: 29 Copynumber: 4.2 Consensus size: 28
46451540 CCAATCTTAT
* * *
46451550 TTATATGGCCCATCAGGCCCAATTCACA
1 TTATATGGCCCATTAGGCCCAAATCACC
* * * **
46451578 TTCATATGGCCCATCAAGCCCAATTCATA
1 TT-ATATGGCCCATTAGGCCCAAATCACC
**
46451607 TTCATATGGCCCATTAGGCTGAAATCACC
1 TT-ATATGGCCCATTAGGCCCAAATCACC
* * *
46451636 TTTATATGTCTCGTTAGGCCCAAATCACC
1 -TTATATGGCCCATTAGGCCCAAATCACC
46451665 TTATAT
1 TTATAT
46451671 TCACGCTCAC
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 8 0.10
29 67 0.87
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (28 bp):
TTATATGGCCCATTAGGCCCAAATCACC
Found at i:46456564 original size:47 final size:47
Alignment explanation
Indices: 46456493--46456850 Score: 581
Period size: 47 Copynumber: 7.6 Consensus size: 47
46456483 CCCTTCGGGA
* * * * * *
46456493 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46456540 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46456587 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46456634 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46456681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46456728 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46456777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46456824 CTTATCACATATATACACCTTCACATT
1 CTTATCACATATATACACTTTCACATT
46456851 TATTCAAATA
Statistics
Matches: 294, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 250 0.85
49 44 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46456571 original size:25 final size:25
Alignment explanation
Indices: 46456543--46456621 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
46456533 ACTCGGCCCT
46456543 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
46456568 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
46456590 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
46456615 ATCACAT
1 ATCACAT
46456622 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:46456814 original size:190 final size:188
Alignment explanation
Indices: 46456493--46456850 Score: 617
Period size: 190 Copynumber: 1.9 Consensus size: 188
46456483 CCCTTCGGGA
* * * * *
46456493 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGACCTATCACATATATACAC
46456558 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
46456623 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
* * *
46456681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGACTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGACCTATCAC--ATATATAC
46456746 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
46456811 TCGGCCATTAGGCCTTATCACATATATACACCTTCACATT
129 TCGGCCATTAGGCCTTATCACATATATACACCTTCACATT
46456851 TATTCAAATA
Statistics
Matches: 159, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
188 47 0.30
190 112 0.70
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGACCTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
Found at i:46461033 original size:39 final size:40
Alignment explanation
Indices: 46460831--46461248 Score: 614
Period size: 39 Copynumber: 10.8 Consensus size: 40
46460821 CCAGCATGAT
* * * *
46460831 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
46460871 TGCTCTTCGGGGTTTAG-CC-GATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
46460909 TGCTCTTCGGAACTTAG-TCGGAT--ATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46460946 T-CTCTTC--GAC-TAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46460982 TGCTCTTC-GGACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46461020 TGCTCTTCGGGACTTAG-CCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46461059 TGCTCTTCGGGACTTAGCCCGGATA-ATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
46461098 TGCTCTTCAAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46461138 TGCTCTTC-GGACTTTAGCCC-GATACATCACTAGCACGAA
1 TGCTCTTCGGGAC-TTAGCCCGGATACATCACTAGCACGAA
46461177 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46461217 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
46461249 CTCAATTCTC
Statistics
Matches: 349, Mismatches: 16, Indels: 26
0.89 0.04 0.07
Matches are distributed among these distances:
33 3 0.01
34 7 0.02
36 21 0.06
37 21 0.06
38 65 0.19
39 127 0.36
40 105 0.30
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:46461139 original size:79 final size:80
Alignment explanation
Indices: 46460831--46461248 Score: 614
Period size: 79 Copynumber: 5.4 Consensus size: 80
46460821 CCAGCATGAT
* * * * **
46460831 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAG-CC-GATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
46460894 TATCACTAGCACGAA
66 CATCACTAGCACGAA
* *
46460909 TGCTCTTCGGAACTTAG-TCGGAT--ATCACTAGCACGAAT-CTCTTC--GAC-TAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
46460967 CATCACTAGCACGAA
66 CATCACTAGCACGAA
46460982 TGCTCTTC-GGACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
46461044 CATCACTAGCATGAA
66 CATCACTAGCACGAA
**
46461059 TGCTCTTCGGGACTTAGCCCGGATA-ATCACTAGCACGAATGCTCTTCAAGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
46461123 CATCACTAGCACGAA
66 CATCACTAGCACGAA
46461138 TGCTCTTC-GGACTTTAGCCC-GATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGGAC-TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
46461201 ACATCACTAGCACGAA
65 ACATCACTAGCACGAA
46461217 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
46461249 CTCAATTCTC
Statistics
Matches: 309, Mismatches: 16, Indels: 28
0.88 0.05 0.08
Matches are distributed among these distances:
71 3 0.01
72 15 0.05
73 26 0.08
74 21 0.07
75 19 0.06
77 37 0.12
78 63 0.20
79 110 0.36
80 15 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:46461609 original size:49 final size:47
Alignment explanation
Indices: 46461509--46461773 Score: 476
Period size: 47 Copynumber: 5.6 Consensus size: 47
46461499 GTGAAGGAAG
46461509 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
46461556 TTATCACATATATACACTTTCACATTCATCACATCGGCCACTATTGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCA-T-TAGGCC
46461605 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
46461652 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCC
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46461701 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46461748 TTATCACATATATACACTTTCACATT
1 TTATCACATATATACACTTTCACATT
46461774 TATTCAAATA
Statistics
Matches: 210, Mismatches: 4, Indels: 8
0.95 0.02 0.04
Matches are distributed among these distances:
47 117 0.56
48 2 0.01
49 91 0.43
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:46461647 original size:96 final size:94
Alignment explanation
Indices: 46461509--46461773 Score: 485
Period size: 96 Copynumber: 2.8 Consensus size: 94
46461499 GTGAAGGAAG
46461509 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
46461574 TTCACATTCATCACATCGGCCACTATTGGCC
66 TTCACATTCATCACATCGGCCA-T-TCGGCC
46461605 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACA
46461670 CTTTCACATTCATCACATCGGCCATTCGGCC
64 CTTTCACATTCATCACATCGGCCATTCGGCC
46461701 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
46461766 TTCACATT
66 TTCACATT
46461774 TATTCAAATA
Statistics
Matches: 166, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
94 19 0.11
96 113 0.68
97 1 0.01
98 33 0.20
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTCGGCC
Found at i:46464986 original size:46 final size:48
Alignment explanation
Indices: 46464878--46465000 Score: 162
Period size: 46 Copynumber: 2.6 Consensus size: 48
46464868 AAGCTGACGC
* * *
46464878 CATGTCCCAGACAGGTCTTATACTAGCT-TCTGTATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCTG-ATCGCAAGGCCGATG
* * *
46464926 TATGTCCCAGACATGTCTTACACTAGCTCTC-G-TCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCTGATCGCAAGGCCGATG
46464972 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
46465001 ACATATCACC
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 39 0.58
48 26 0.39
49 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTGATCGCAAGGCCGATG
Found at i:46466414 original size:390 final size:390
Alignment explanation
Indices: 46465695--46466482 Score: 1567
Period size: 390 Copynumber: 2.0 Consensus size: 390
46465685 TACAAGGGTT
46465695 CCAAAATTATAAAAATTATCAAGAATAACCTTCAATTTGACTTACTTGCAAGAGGATAGCTTAGT
1 CCAAAATTATAAAAATTATCAAGAATAACCTTCAATTTGACTTACTTGCAAGAGGATAGCTTAGT
46465760 TGAAATTTTTGAATCTTAAAAAAGCCCCTATTTTTCTGGTATGAATGATGGGAAGAAGATGCGAG
66 TGAAATTTTTGAATCTTAAAAAAGCCCCTATTTTTCTGGTATGAATGATGGGAAGAAGATGCGAG
46465825 AAAATAAAATAGCATTTTCTCCTTATTCAATTTTATTTTTAACCAATTTAGTCACCAAAACCCAC
131 AAAATAAAATAGCATTTTCTCCTTATTCAATTTTATTTTTAACCAATTTAGTCACCAAAACCCAC
46465890 CTAACCTAGTCAACTTGGTCAAATATTGTCCCTATGGCCTGCCAAGCTTCTTTTAAAGGTTTAAT
196 CTAACCTAGTCAACTTGGTCAAATATTGTCCCTATGGCCTGCCAAGCTTCTTTTAAAGGTTTAAT
46465955 TGCACTTTAAAGGCCTCCAATTATGGCTCTCTAGCTATTTAGTATATCTATCAAGTAAAATAGAA
261 TGCACTTTAAAGGCCTCCAATTATGGCTCTCTAGCTATTTAGTATATCTATCAAGTAAAATAGAA
*
46466020 CTTTTACCCTTTATGCGATTTAGTCCTTCTTCAAAATTTGACTTTCAAATGCTAAAATTAATTCA
326 CTTTTACCCTTTATGCGATTTAGTCCTTCTTCAAAATTAGACTTTCAAATGCTAAAATTAATTCA
46466085 CCAAAATTATAAAAATTATCAAGAATAACCTTCAATTTGACTTACTTGCAAGAGGATAGCTTAGT
1 CCAAAATTATAAAAATTATCAAGAATAACCTTCAATTTGACTTACTTGCAAGAGGATAGCTTAGT
46466150 TGAAATTTTTGAATCTTAAAAAAGCCCCTATTTTTCTGGTATGAATGATGGGAAGAAGATGCGAG
66 TGAAATTTTTGAATCTTAAAAAAGCCCCTATTTTTCTGGTATGAATGATGGGAAGAAGATGCGAG
46466215 AAAATAAAATAGCATTTTCTCCTTATTCAATTTTATTTTTAACCAATTTAGTCACCAAAACCCAC
131 AAAATAAAATAGCATTTTCTCCTTATTCAATTTTATTTTTAACCAATTTAGTCACCAAAACCCAC
46466280 CTAACCTAGTCAACTTGGTCAAATATTGTCCCTATGGCCTGCCAAGCTTCTTTTAAAGGTTTAAT
196 CTAACCTAGTCAACTTGGTCAAATATTGTCCCTATGGCCTGCCAAGCTTCTTTTAAAGGTTTAAT
46466345 TGCACTTTAAAGGCCTCCAATTATGGCTCTCTAGCTATTTAGTATATCTATCAAGTAAAATAGAA
261 TGCACTTTAAAGGCCTCCAATTATGGCTCTCTAGCTATTTAGTATATCTATCAAGTAAAATAGAA
46466410 CTTTTACCCTTTATGCGATTTAGTCCTTCTTCAAAATTAGACTTTCAAATGCTAAAATTAATTCA
326 CTTTTACCCTTTATGCGATTTAGTCCTTCTTCAAAATTAGACTTTCAAATGCTAAAATTAATTCA
46466475 CCAAAATT
1 CCAAAATT
46466483 TTCATGTATA
Statistics
Matches: 397, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
390 397 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.35
Consensus pattern (390 bp):
CCAAAATTATAAAAATTATCAAGAATAACCTTCAATTTGACTTACTTGCAAGAGGATAGCTTAGT
TGAAATTTTTGAATCTTAAAAAAGCCCCTATTTTTCTGGTATGAATGATGGGAAGAAGATGCGAG
AAAATAAAATAGCATTTTCTCCTTATTCAATTTTATTTTTAACCAATTTAGTCACCAAAACCCAC
CTAACCTAGTCAACTTGGTCAAATATTGTCCCTATGGCCTGCCAAGCTTCTTTTAAAGGTTTAAT
TGCACTTTAAAGGCCTCCAATTATGGCTCTCTAGCTATTTAGTATATCTATCAAGTAAAATAGAA
CTTTTACCCTTTATGCGATTTAGTCCTTCTTCAAAATTAGACTTTCAAATGCTAAAATTAATTCA
Found at i:46468868 original size:40 final size:40
Alignment explanation
Indices: 46468813--46468892 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
46468803 CATATCTACT
46468813 AAAACCACAACAAAGATACCATTAAAAAGGATCATGGCCA
1 AAAACCACAACAAAGATACCATTAAAAAGGATCATGGCCA
*
46468853 AAAACCACAACAAAGATACCATTAAAAGGGATCATGGCCA
1 AAAACCACAACAAAGATACCATTAAAAAGGATCATGGCCA
46468893 GCACACACAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.51, C:0.23, G:0.14, T:0.12
Consensus pattern (40 bp):
AAAACCACAACAAAGATACCATTAAAAAGGATCATGGCCA
Found at i:46475414 original size:19 final size:24
Alignment explanation
Indices: 46475362--46475414 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
46475352 TTTCTCAAGA
46475362 TAAATATTATATTAAATTTAATAT
1 TAAATATTATATTAAATTTAATAT
46475386 TAAATATTAT-TT-AA-TTAATA-
1 TAAATATTATATTAAATTTAATAT
46475406 T-AATATTAT
1 TAAATATTAT
46475415 CTACAAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.28
20 1 0.03
21 6 0.21
22 2 0.07
23 2 0.07
24 10 0.34
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TAAATATTATATTAAATTTAATAT
Found at i:46480799 original size:20 final size:20
Alignment explanation
Indices: 46480763--46480801 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
46480753 TTGCACAAAT
* *
46480763 GTGCCCCTGTCTGCACTTCG
1 GTGCCCCTGTATACACTTCG
46480783 GTGCCCCTGTATACACTTC
1 GTGCCCCTGTATACACTTC
46480802 ATTGTCTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.38, G:0.21, T:0.31
Consensus pattern (20 bp):
GTGCCCCTGTATACACTTCG
Found at i:46482412 original size:13 final size:13
Alignment explanation
Indices: 46482394--46482420 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46482384 AAGTGACATG
46482394 TCACTAGGAACTA
1 TCACTAGGAACTA
46482407 TCACTAGGAACTA
1 TCACTAGGAACTA
46482420 T
1 T
46482421 GTGATCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (13 bp):
TCACTAGGAACTA
Found at i:46485966 original size:46 final size:46
Alignment explanation
Indices: 46485860--46486074 Score: 173
Period size: 46 Copynumber: 4.6 Consensus size: 46
46485850 AAGCTGACGC
* * * * * *
46485860 CATGTCCCAGATAGGTCTTACACTAGCTCGTCCAT-TGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTC-T-TATCT-CAACGCCGATG
* *
46485908 CATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAACGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAACGCCGATG
* * * *
46485954 CATGTCCCAGACATGTCTTACATTGGCT-TAAATATCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT---TATCTCAACGCCGATG
* * * * ****
46486002 CATGTCCCAGACATGTCTTACATTGGCTCTCATATTTTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAACGCCGATG
*
46486048 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
46486075 ATACATATCA
Statistics
Matches: 141, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.50
47 2 0.01
48 67 0.48
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAACGCCGATG
Found at i:46486021 original size:48 final size:46
Alignment explanation
Indices: 46485904--46486069 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 46
46485894 TTGCGAGGCT
* * * * *
46485904 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-TGTCTCAACGCT
1 GATGCATGTCCCAGACATGTCTTACATTGGCTCTATATCTCGA-GCC
46485950 GATGCATGTCCCAGACATGTCTTACATTGGCT-TAAATATCTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCTCT--ATATCTCGA-GCC
* *
46485998 GATGCATGTCCCAGACATGTCTTACATTGGCTCTCATATTTTG-GCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCTCT-ATATCTCGAGCC
*
46486044 GATGCATGTCCCAAACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
46486070 CTAGCATACA
Statistics
Matches: 106, Mismatches: 10, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
45 1 0.01
46 58 0.55
48 46 0.43
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACATTGGCTCTATATCTCGAGCC
Done.