Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 139 of 311
Found at i:47088961 original size:16 final size:15
Alignment explanation
Indices: 47088940--47088975 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
47088930 GATAAAGTGC
*
47088940 AATTTATTATTTTACT
1 AATTTATAATTTTA-T
47088956 AATTTATAATTTTAT
1 AATTTATAATTTTAT
47088971 AATTT
1 AATTT
47088976 TTAAAAAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTTATAATTTTAT
Found at i:47090905 original size:79 final size:76
Alignment explanation
Indices: 47090774--47090939 Score: 208
Period size: 79 Copynumber: 2.2 Consensus size: 76
47090764 GTTAGTGCAG
* * * *
47090774 ATGTACTAAATTATGTGACAGAATATAAGTTCAAATGATATTATCTAAATAAATGAAAATAAAAA
1 ATGTACTAAATTATGTGACAAAATATAAGTTCAAACGATATCAACTAAAT-AA--AAAATAAAAA
* *
47090839 TTAAACAAATATAA
63 TCAAACAAATACAA
* *
47090853 ATGTACTAAATTGTGTGACAAAATATAAGTTCAGACGATATCAACTAAATAAAAAATAAAAATCA
1 ATGTACTAAATTATGTGACAAAATATAAGTTCAAACGATATCAACTAAATAAAAAATAAAAATCA
*
47090918 AATAAATACAA
66 AACAAATACAA
*
47090929 ATGGA-TAAATT
1 ATGTACTAAATT
47090940 TAAAAAACAA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
75 6 0.08
76 25 0.32
78 2 0.03
79 44 0.57
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.28
Consensus pattern (76 bp):
ATGTACTAAATTATGTGACAAAATATAAGTTCAAACGATATCAACTAAATAAAAAATAAAAATCA
AACAAATACAA
Found at i:47093954 original size:16 final size:16
Alignment explanation
Indices: 47093933--47093963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47093923 GATTGATTTG
47093933 TAAAATTTCAAAGTTT
1 TAAAATTTCAAAGTTT
*
47093949 TAAAATTTTAAAGTT
1 TAAAATTTCAAAGTT
47093964 GGTATCGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
TAAAATTTCAAAGTTT
Found at i:47094712 original size:61 final size:61
Alignment explanation
Indices: 47094634--47094755 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
47094624 AAACCGAGAT
*
47094634 AAATTATGAGGCGCTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
1 AAATTATGAGGCACTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
* * *
47094695 AAATTATGAGGTACTTGATAGACTAATCCTCTCAGTCTATCTACCTAAATTACTCCCTAGG
1 AAATTATGAGGCACTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
47094756 GTCGTTAATC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (61 bp):
AAATTATGAGGCACTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
Found at i:47096820 original size:15 final size:13
Alignment explanation
Indices: 47096786--47096823 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
47096776 AAAGATGATT
47096786 TATACATGTTAAA
1 TATACATGTTAAA
47096799 TATACATGTTAAA
1 TATACATGTTAAA
47096812 TGAATACATGTT
1 T--ATACATGTT
47096824 GTGGAAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 14 0.61
15 9 0.39
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (13 bp):
TATACATGTTAAA
Found at i:47099257 original size:17 final size:17
Alignment explanation
Indices: 47099235--47099267 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
47099225 AAGAATCGGG
47099235 TTGGGAAAATTATTTAA
1 TTGGGAAAATTATTTAA
47099252 TTGGGAAAATTATTTA
1 TTGGGAAAATTATTTA
47099268 TTTATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (17 bp):
TTGGGAAAATTATTTAA
Found at i:47102174 original size:19 final size:18
Alignment explanation
Indices: 47102152--47102194 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
47102142 TTAAAACTGA
47102152 AAAAAATATGTAAAATTAC
1 AAAAAATAT-TAAAATTAC
* *
47102171 AAAAAGTATTAAAATTAT
1 AAAAAATATTAAAATTAC
47102189 AAAAAA
1 AAAAAA
47102195 ATAAAAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAAAATATTAAAATTAC
Found at i:47103073 original size:18 final size:18
Alignment explanation
Indices: 47103051--47103111 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
47103041 TTTATTTTTT
47103051 ATTTTTATTTTTTTATAA
1 ATTTTTATTTTTTTATAA
* * *
47103069 GTTTTTATGTTTTTA-ATT
1 ATTTTTATTTTTTTATA-A
* *
47103087 TTTTTTATTTTTTAATAA
1 ATTTTTATTTTTTTATAA
47103105 ATTTTTA
1 ATTTTTA
47103112 GGTTTATTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (18 bp):
ATTTTTATTTTTTTATAA
Found at i:47103090 original size:17 final size:17
Alignment explanation
Indices: 47103040--47103102 Score: 62
Period size: 16 Copynumber: 3.8 Consensus size: 17
47103030 ATATTTATAG
47103040 TTTTATTTTTT-ATTTT
1 TTTTATTTTTTAATTTT
* *
47103056 TATTT-TTTTATAA--GT
1 T-TTTATTTTTTAATTTT
47103071 TTTTATGTTTTTAATTTT
1 TTTTAT-TTTTTAATTTT
47103089 TTTTATTTTTTAAT
1 TTTTATTTTTTAAT
47103103 AAATTTTTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.08
15 3 0.08
16 12 0.32
17 12 0.32
18 7 0.19
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTATTTTTTAATTTT
Found at i:47103362 original size:18 final size:18
Alignment explanation
Indices: 47103341--47103377 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47103331 ATGAAGTGTA
47103341 TATTAATACTATATTATT
1 TATTAATACTATATTATT
*
47103359 TATTAATACTCTATTATT
1 TATTAATACTATATTATT
47103377 T
1 T
47103378 GTAATTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTAATACTATATTATT
Found at i:47105511 original size:22 final size:22
Alignment explanation
Indices: 47105479--47105544 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
47105469 ATTAAGCTAG
*
47105479 GAACGGAAAGCTTTATTGAGCT
1 GAACGGGAAGCTTTATTGAGCT
*
47105501 GAACGGGAAGCTCTATTGAGCT
1 GAACGGGAAGCTTTATTGAGCT
*
47105523 GAACGAGAAGCTCTTA-TGAGCT
1 GAACGGGAAGCT-TTATTGAGCT
47105545 ATGGTGAGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 37 0.95
23 2 0.05
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (22 bp):
GAACGGGAAGCTTTATTGAGCT
Found at i:47113953 original size:47 final size:47
Alignment explanation
Indices: 47113890--47114184 Score: 482
Period size: 47 Copynumber: 6.3 Consensus size: 47
47113880 CCCTTCGGGA
* *
47113890 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
47113937 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47113984 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
47114031 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47114078 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47114125 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
47114172 CTTATCACATATA
1 CTTATCACATATA
47114185 CATATCTTGT
Statistics
Matches: 228, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:47127457 original size:22 final size:22
Alignment explanation
Indices: 47127429--47127499 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
47127419 ATTAAGCTGG
47127429 GAACGGGAAGCTTTATTGAGCT
1 GAACGGGAAGCTTTATTGAGCT
*
47127451 GAACGGGAAG-TTCTATTGATCT
1 GAACGGGAAGCTT-TATTGAGCT
* **
47127473 AAACGGGAAGCACTATTGAGCT
1 GAACGGGAAGCTTTATTGAGCT
47127495 GAACG
1 GAACG
47127500 AAAAGCTCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 2 0.05
22 39 0.95
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (22 bp):
GAACGGGAAGCTTTATTGAGCT
Found at i:47130126 original size:16 final size:16
Alignment explanation
Indices: 47130091--47130128 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
47130081 TAATCAAAAC
*
47130091 ATAATTTAAATTATAT
1 ATAATTTAAATTATAA
47130107 ATAACTTTAAATT-TAA
1 ATAA-TTTAAATTATAA
47130123 ATAATT
1 ATAATT
47130129 CAAAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 10 0.50
17 8 0.40
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATTTAAATTATAA
Found at i:47133547 original size:19 final size:19
Alignment explanation
Indices: 47133523--47133560 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
47133513 ATATGGTTTC
47133523 TTTAATAGTTCGAAAACTG
1 TTTAATAGTTCGAAAACTG
47133542 TTTAATAGTTCGAAAACTG
1 TTTAATAGTTCGAAAACTG
47133561 ACTTGTTCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
TTTAATAGTTCGAAAACTG
Found at i:47134521 original size:16 final size:16
Alignment explanation
Indices: 47134500--47134533 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
47134490 GTGTCAGGCG
47134500 TTAAAAAAAATGATTT
1 TTAAAAAAAATGATTT
47134516 TTAAAAAAAATGATTT
1 TTAAAAAAAATGATTT
47134532 TT
1 TT
47134534 TGGGTGCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
TTAAAAAAAATGATTT
Found at i:47134825 original size:55 final size:55
Alignment explanation
Indices: 47134763--47134926 Score: 192
Period size: 55 Copynumber: 3.0 Consensus size: 55
47134753 TATTTTTTGG
*
47134763 GGTGCTGGGACACTAATGGTCGACACTCCAGTACTAGATTTAAAAAAAAGAATT-A
1 GGTGCTGGGACACTAATGGTCGACACTCCAGTACCAGATTTAAAAAAAA-AATTGA
* * * *
47134818 TGTGCTGGGACACTAATGGCCGACAC-CCTAGTACCAGAATTT-TAAAAAAAATTGG
1 GGTGCTGGGACACTAATGGTCGACACTCC-AGTACCAG-ATTTAAAAAAAAAATTGA
* *
47134873 GGTGCTAGGACACTGATGGTCGGA-ACTCCAGTACCAGATTTAAAAAAAATAATT
1 GGTGCTGGGACACTAATGGTC-GACACTCCAGTACCAGATTTAAAAAAAA-AATT
47134927 CTTTTTTGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
54 10 0.11
55 70 0.76
56 12 0.13
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (55 bp):
GGTGCTGGGACACTAATGGTCGACACTCCAGTACCAGATTTAAAAAAAAAATTGA
Found at i:47141192 original size:71 final size:71
Alignment explanation
Indices: 47141015--47141422 Score: 515
Period size: 71 Copynumber: 5.7 Consensus size: 71
47141005 AGATAATTTA
* * * **
47141015 AAAAAAGAAATAGTTAAAGGATAAATCAATTTAAAGGAATAAATGTAAAATGTTTTAAAAAATAA
1 AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAAT-TTAAA--TTTTAAAAAATTG
47141080 AATTTAATT
63 AATTTAATT
47141089 AAGAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTTAAAAAATTGA
1 AA-AAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAA-TTTTAAAAAATTGA
47141154 ATTTAATT
64 ATTTAATT
* *
47141162 -AAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAATTTAAA-TTTAAAAAATCGAAT
1 AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTGAAT
47141225 TTAATT
66 TTAATT
* *
47141231 GAAAAAAGAAAAAAAATT-AAGGATAAATTAATTTAAAGGAATAAATTTAAAATTT-AAAAATAT
1 -AAAAAAG--AAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAAT-T
47141294 -AATTTAATT
62 GAATTTAATT
* * *
47141303 AAAAAAGAAATAATTAAAGGATAAATTACTTTTAAGGAATAAATTTAAATTTT-AAAAATTGTAT
1 AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTGAAT
47141367 TTAATT
66 TTAATT
* * * *
47141373 -AAAAATAAATAATTTAAGGATAAATTTAAATTTTAAGAAATAGAATTTAA
1 AAAAAAGAAATAATTAAAGGATAAA-TT-AATTTAAAGGAATA-AATTTAA
47141423 TTAAAAAAGA
Statistics
Matches: 302, Mismatches: 20, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
69 50 0.17
70 50 0.17
71 71 0.24
72 55 0.18
73 30 0.10
74 6 0.02
75 40 0.13
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (71 bp):
AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTGAAT
TTAATT
Found at i:47141284 original size:21 final size:20
Alignment explanation
Indices: 47141260--47141300 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
47141250 AGGATAAATT
47141260 AATTTAAAGGAATA-AATTTAA
1 AATTTAAA--AATATAATTTAA
47141281 AATTTAAAAATATAATTTAA
1 AATTTAAAAATATAATTTAA
47141301 TTAAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
21 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
AATTTAAAAATATAATTTAA
Found at i:47141825 original size:30 final size:30
Alignment explanation
Indices: 47141790--47141855 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
47141780 ATGCAGGTGT
47141790 CACACGACCATGTGACTCACAAGGCTGAGA
1 CACACGACCATGTGACTCACAAGGCTGAGA
** * *
47141820 CACACGGTCGTGTGACTCACACGGCTGAGA
1 CACACGACCATGTGACTCACAAGGCTGAGA
*
47141850 TACACG
1 CACACG
47141856 CCTCTGAGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.30, G:0.26, T:0.15
Consensus pattern (30 bp):
CACACGACCATGTGACTCACAAGGCTGAGA
Found at i:47141864 original size:15 final size:15
Alignment explanation
Indices: 47141844--47141873 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
47141834 ACTCACACGG
47141844 CTGAGATACACGCCT
1 CTGAGATACACGCCT
47141859 CTGAGATACACGCCT
1 CTGAGATACACGCCT
47141874 GTGTCCCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (15 bp):
CTGAGATACACGCCT
Found at i:47142915 original size:38 final size:38
Alignment explanation
Indices: 47142846--47142923 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 38
47142836 AACTTTTATT
* * **
47142846 ACACTGGCAATAAGCCTGCTATGCATTAAGCCTGAATA
1 ACACCGGCAATAAGCCTGCTAGGCACAAAGCCTGAATA
* *
47142884 ACACCGGCACTAAGCCTGTTAGGCACAAAGCCTGAATA
1 ACACCGGCAATAAGCCTGCTAGGCACAAAGCCTGAATA
47142922 AC
1 AC
47142924 CATATAACTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (38 bp):
ACACCGGCAATAAGCCTGCTAGGCACAAAGCCTGAATA
Found at i:47147239 original size:53 final size:54
Alignment explanation
Indices: 47147093--47147243 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 54
47147083 TATAGACTAA
* * * *
47147093 TGGGGTGTCGACAATCAGTATCCTAGCACCCCAAATTTTTTTAAAAATTTGGTAC
1 TGGGGTGCCGACCATCAGTGTCCTAGCA-CCCAAATTTTTTTAAAAATCTGGTAC
* * * **
47147148 TGGGGTGCCGACCATCAGTGTCCCAACA-CCTAATTTTTTTTTAAATCTGGTAC
1 TGGGGTGCCGACCATCAGTGTCCTAGCACCCAAATTTTTTTAAAAATCTGGTAC
* *
47147201 TGGGGTGCCGGCCATCAGTGTTCTAGCACCCAAATTTTTTTAA
1 TGGGGTGCCGACCATCAGTGTCCTAGCACCCAAATTTTTTTAA
47147244 TTTTAAAAGA
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
53 45 0.57
54 11 0.14
55 23 0.29
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (54 bp):
TGGGGTGCCGACCATCAGTGTCCTAGCACCCAAATTTTTTTAAAAATCTGGTAC
Found at i:47151540 original size:43 final size:43
Alignment explanation
Indices: 47151470--47151576 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 43
47151460 ATTCATTCAT
* ** *
47151470 CGGCATTA-CGCCTGCTAGGCTCGAAGCCCAATATTAACTCAC
1 CGGCATTATAGCCTGCTAGGCTTAAAGCCCAATATTAAATCAC
* * *
47151512 CGGCATTATAGCTTGGTAGGCTTAAAGCCCGATATTAAATCAC
1 CGGCATTATAGCCTGCTAGGCTTAAAGCCCAATATTAAATCAC
47151555 CGGCATTATAGCCTGCTAGGCT
1 CGGCATTATAGCCTGCTAGGCT
47151577 CGAAGGCCCA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
42 8 0.15
43 47 0.85
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (43 bp):
CGGCATTATAGCCTGCTAGGCTTAAAGCCCAATATTAAATCAC
Found at i:47151988 original size:30 final size:30
Alignment explanation
Indices: 47151954--47152052 Score: 144
Period size: 30 Copynumber: 3.3 Consensus size: 30
47151944 CTAGCCTTTG
* * *
47151954 CCACCGCCAACTCCACTAACCAGACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
47151984 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
47152014 TCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
47152044 CCACCACCA
1 CCACCACCA
47152053 CTTGTACCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.26, C:0.48, G:0.07, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:47152613 original size:27 final size:25
Alignment explanation
Indices: 47152508--47152717 Score: 82
Period size: 25 Copynumber: 8.6 Consensus size: 25
47152498 TTTTTTTTGT
* *
47152508 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATATTTAATACTA
* * *
47152531 TATTATATATAT-TCTTT--TAATA
1 TATTATGTATATATATTTAATACTA
* * * *
47152553 TATTAGGTATAT-T-CTAAATTCTA
1 TATTATGTATATATATTTAATACTA
*
47152576 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATATAT-TTAATACTA
* *
47152601 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATATTTAATACTA
* * **
47152626 TATTATTTATATATTTTTTTTCTACATGTTA
1 TATTATGTATATA----TATT-TA-ATACTA
*
47152657 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATATTTAATACTA
* * * *
47152679 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATATTTAATACTA
*
47152704 TATTATGTACATAT
1 TATTATGTATATAT
47152718 TTTTTTATAT
Statistics
Matches: 143, Mismatches: 28, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
21 1 0.01
22 29 0.20
23 24 0.17
24 14 0.10
25 51 0.36
26 3 0.02
27 1 0.01
29 3 0.02
30 2 0.01
31 15 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTATGTATATATATTTAATACTA
Found at i:47152759 original size:78 final size:77
Alignment explanation
Indices: 47152587--47152759 Score: 181
Period size: 78 Copynumber: 2.2 Consensus size: 77
47152577 ATTACGTATA
* * * * *
47152587 TATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATTTTTTTTCTACA
1 TATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATACA
*
47152652 TGTTATCTTATG
66 TGTTATCATATG
* * * * *
47152664 TATATATTTTAATTATATTATGTATGTATTTTTTACACTATATTATGTACATA-TTTTTTTATAT
1 TATATATTAT-ACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA-
47152728 CTAT-TTCATACATATG
64 C-ATGTT-AT-CATATG
47152744 TATATATTATA-TATAT
1 TATATATTATACTATAT
47152760 GTTAACATTA
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
77 18 0.23
78 42 0.53
79 5 0.06
80 14 0.18
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (77 bp):
TATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATACA
TGTTATCATATG
Found at i:47163115 original size:72 final size:73
Alignment explanation
Indices: 47162995--47163366 Score: 556
Period size: 73 Copynumber: 5.1 Consensus size: 73
47162985 TGATGTTTTT
* * ** * * * *
47162995 ATTTCTATTT-TCAAAATTCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
47163059 TAATTTCA
66 TAATTTCA
*
47163067 ATTTCTGTTTGTCAAAAATCAACTCATATT-CGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
47163131 TAATTTCA
66 TAATTTCA
* *
47163139 ATTTATGTTTTTCAAAACA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 ATTTCTGTTTGTCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
47163203 GTAATTTCA
65 GTAATTTCA
* *
47163212 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTAAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
47163277 TAATTTCA
66 TAATTTCA
* *
47163285 ATTT-TGTTTGTCAAACA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
47163348 TAATTTTCA
66 TAA-TTTCA
47163357 ATTTCTGTTT
1 ATTTCTGTTT
47163367 TTTTCAATTT
Statistics
Matches: 274, Mismatches: 20, Indels: 11
0.90 0.07 0.04
Matches are distributed among these distances:
71 46 0.17
72 92 0.34
73 136 0.50
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
TAATTTCA
Found at i:47163293 original size:145 final size:145
Alignment explanation
Indices: 47163002--47163366 Score: 581
Period size: 145 Copynumber: 2.5 Consensus size: 145
47162992 TTTATTTCTA
** ** * * * *
47163002 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAACACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCA
*
47163067 ATTTCTGTTTGTCAAAAATCAACTCATATTCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGT
66 ATTTCTGTTTGTCAAAAATCAACTCATATTCGAGAGGTGAGTTGAGCCTCAGGGCACACTAAGGT
47163132 AATTTCAATTTATGT
131 AATTTCAATTTATGT
47163147 TTTTCAAAACACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCA
1 TTTTCAAAACACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCA
* *
47163212 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTAAGG
66 ATTTCTGTTTGTCAAAAATCAACTCATATT-CGAGAGGTGAGTTGAGCCTCAGGGCACACTAAGG
47163277 TAATTTCAATTT-TGT
130 TAATTTCAATTTATGT
* *
47163292 TTGTC-AAACACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTAATTTTC
1 TTTTCAAAACACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAA-TTTC
47163356 AATTTCTGTTT
65 AATTTCTGTTT
47163367 TTTTCAATTT
Statistics
Matches: 205, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
144 53 0.26
145 109 0.53
146 43 0.21
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (145 bp):
TTTTCAAAACACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCA
ATTTCTGTTTGTCAAAAATCAACTCATATTCGAGAGGTGAGTTGAGCCTCAGGGCACACTAAGGT
AATTTCAATTTATGT
Found at i:47163383 original size:16 final size:16
Alignment explanation
Indices: 47163351--47163384 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
47163341 GCTGAGGTAA
* *
47163351 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
47163367 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
47163383 TT
1 TT
47163385 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:47163466 original size:89 final size:89
Alignment explanation
Indices: 47163280--47163601 Score: 495
Period size: 89 Copynumber: 3.6 Consensus size: 89
47163270 GCTAAGGTAA
* * * *
47163280 TTTCAATTT-TGTTTGTCAAACA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGC
1 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
47163343 TGAGGTAATTTTCAATTTCTGTTTT
66 TGAGGT-ATTTTCAATTTCTGTTTT
*
47163368 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGGACATGC
1 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
47163433 TGAGGTATTTTCAATTTCTGTTTT
66 TGAGGTATTTTCAATTTCTGTTTT
* * *
47163457 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTTAGCCTCAGGACACGC
1 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
* * *
47163522 TAAGGTATTTTCAATTTTTATTTT
66 TGAGGTATTTTCAATTTCTGTTTT
* * *
47163546 TTTCAATTTATATTTTTCAAAAATTAATTCATATTGCGAGAGATGAGTTGAGCCTC
1 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
47163602 GGGGCTGACA
Statistics
Matches: 217, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
88 9 0.04
89 163 0.75
90 45 0.21
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.41
Consensus pattern (89 bp):
TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTATTTTCAATTTCTGTTTT
Found at i:47163472 original size:16 final size:16
Alignment explanation
Indices: 47163440--47163473 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
47163430 TGCTGAGGTA
* *
47163440 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
47163456 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
47163472 TT
1 TT
47163474 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:47163550 original size:16 final size:16
Alignment explanation
Indices: 47163529--47163562 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
47163519 CGCTAAGGTA
*
47163529 TTTTCAATTTTTATTT
1 TTTTCAATTTATATTT
47163545 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
47163561 TT
1 TT
47163563 CAAAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:47163655 original size:178 final size:178
Alignment explanation
Indices: 47163302--47163657 Score: 470
Period size: 178 Copynumber: 2.0 Consensus size: 178
47163292 TTGTCAAACA
* * * *
47163302 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTAATTTTCAATTTCTGTTT
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTTCAATTTCTATTT
* *
47163367 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGGACATG
66 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACATG
* ** * *
47163432 CTGAGGTATTTTCAATTTCTGTTTTTTTCAATTTATATTTTTCAAAAAT
131 CTGAAGTATTTTCAAAATCTG-TTTTTTCAAATTATATGTTTCAAAAAT
* * *
47163481 CAACTCATATTGCGAGATGTGAGTTTAGCCTCAGGACACGCTAAGGT-ATTTTCAATTTTTATTT
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTTCAATTTCTATTT
* * *
47163545 TTTTCAATTTATATTTTTCAAAAATTAATTCATATTGCGAGAGATGAGTTGAGCCTCGGGGCTGA
66 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC--AG--GA
47163610 CATG-TCGAAGTATTTTCAAAATCTG-TTTTTCAAATTA-A-GTTTCAAAAA
127 CATGCT-GAAGTATTTTCAAAATCTGTTTTTTCAAATTATATGTTTCAAAAA
47163658 AAAAACCAAC
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
178 77 0.50
179 43 0.28
180 12 0.08
181 1 0.01
182 22 0.14
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (178 bp):
CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTTCAATTTCTATTT
TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACATG
CTGAAGTATTTTCAAAATCTGTTTTTTCAAATTATATGTTTCAAAAAT
Found at i:47164468 original size:18 final size:18
Alignment explanation
Indices: 47164445--47164499 Score: 50
Period size: 18 Copynumber: 3.4 Consensus size: 18
47164435 CCACCACCAA
47164445 CTCCACTAACCACACTTG
1 CTCCACTAACCACACTTG
*
47164463 CTCCAC-CACCA-A----
1 CTCCACTAACCACACTTG
*
47164475 CTCCACTAGCCACACTTG
1 CTCCACTAACCACACTTG
47164493 CTCCACT
1 CTCCACT
47164500 TACCTACTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 12
0.65 0.07 0.28
Matches are distributed among these distances:
12 6 0.21
13 3 0.11
14 1 0.04
16 1 0.04
17 4 0.14
18 13 0.46
ACGTcount: A:0.25, C:0.49, G:0.05, T:0.20
Consensus pattern (18 bp):
CTCCACTAACCACACTTG
Found at i:47164512 original size:31 final size:30
Alignment explanation
Indices: 47164435--47164534 Score: 164
Period size: 30 Copynumber: 3.3 Consensus size: 30
47164425 CTAGCCTTTG
*
47164435 CCACCACCAACTCCACTAACCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
47164465 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
47164495 CCACTTACCTACTCCACTAGCCACACTTGCT
1 CCAC-CACCAACTCCACTAGCCACACTTGCT
47164526 CCACCACCA
1 CCACCACCA
47164535 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
30 36 0.56
31 28 0.44
ACGTcount: A:0.27, C:0.50, G:0.05, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:47164529 original size:18 final size:18
Alignment explanation
Indices: 47164475--47164529 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
47164465 CCACCACCAA
47164475 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
* *
47164493 CTCCACT---TAC-C-TA
1 CTCCACTAGCCACACTTG
47164506 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
47164524 CTCCAC
1 CTCCAC
47164530 CACCACTTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
13 8 0.29
14 1 0.04
15 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.47, G:0.07, T:0.24
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:47165121 original size:27 final size:25
Alignment explanation
Indices: 47165081--47165225 Score: 91
Period size: 25 Copynumber: 5.7 Consensus size: 25
47165071 ATTCTAAATT
*
47165081 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATAT-TTAATA
* *
47165106 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* *
47165131 CTATATTATTTATATATATTTTTTCTACATG
1 CTATATTATGTATATATA----TT-TA-ATA
* *
47165162 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * * *
47165185 -TATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATTTAATA
*
47165209 CTATATTATGTACATAT
1 CTATATTATGTATATAT
47165226 TTTTTTTATA
Statistics
Matches: 94, Mismatches: 16, Indels: 20
0.72 0.12 0.15
Matches are distributed among these distances:
22 14 0.15
23 4 0.04
24 4 0.04
25 50 0.53
26 2 0.02
29 2 0.02
30 2 0.02
31 16 0.17
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:47165320 original size:25 final size:24
Alignment explanation
Indices: 47165292--47165347 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
47165282 GTTATATTTT
*
47165292 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
47165317 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
47165340 CACTATTA
1 CACTATTA
47165348 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:47170706 original size:39 final size:40
Alignment explanation
Indices: 47170656--47170772 Score: 184
Period size: 39 Copynumber: 3.0 Consensus size: 40
47170646 TTATATTACC
* *
47170656 AGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCT
1 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCT
*
47170696 -GCTCGAAGCCTACGGGACTTTAGCCCGGATACATTT-CT
1 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCT
*
47170734 AGCACGAAGCCTACGAGACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCC
47170773 AGTGTCTTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
38 2 0.03
39 67 0.96
40 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCT
Found at i:47175100 original size:99 final size:99
Alignment explanation
Indices: 47174875--47175133 Score: 281
Period size: 99 Copynumber: 2.7 Consensus size: 99
47174865 GCCGATGCCG
* * * **
47174875 TGTCCCAGACATGGTCTTACACT-G-GCTCATCTATT-AAGCCGATGCCATGTCCCATACATGGT
1 TGTCCCAAACATGGTCTTACACTAGCTCTCATATATTCGTGCCGATGCCATGTCCCATACATGGT
*
47174937 CTTACATTGACTATCAAAATCGAGGTCGACGCCA
66 CTTACACTGACTATCAAAATCGAGGTCGACGCCA
47174971 TGTCCCAAACATGGTCTTACACTAGCTCTCATATATTCGTGCCGATGCCATGTCCCATACATGGT
1 TGTCCCAAACATGGTCTTACACTAGCTCTCATATATTCGTGCCGATGCCATGTCCCATACATGGT
** *
47175036 CTTACACTGAC-A-C-ATCTCGTA-GTCGATG-CA
66 CTTACACTGACTATCAAAATCG-AGGTCGACGCCA
* * * * * *
47175066 TGTCCCATACAT-GTCTTACACTAGCTCTC--GT-CTCAATGCCAATGCCATGTCCCAAACATGG
1 TGTCCCAAACATGGTCTTACACTAGCTCTCATATATTC-GTGCCGATGCCATGTCCCATACATGG
47175127 TCTTACA
65 TCTTACA
47175134 TTGGCTCTCA
Statistics
Matches: 143, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
91 2 0.01
92 31 0.22
94 17 0.12
95 13 0.09
96 32 0.22
97 3 0.02
98 10 0.07
99 35 0.24
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (99 bp):
TGTCCCAAACATGGTCTTACACTAGCTCTCATATATTCGTGCCGATGCCATGTCCCATACATGGT
CTTACACTGACTATCAAAATCGAGGTCGACGCCA
Found at i:47175173 original size:94 final size:94
Alignment explanation
Indices: 47174875--47175158 Score: 274
Period size: 96 Copynumber: 3.0 Consensus size: 94
47174865 GCCGATGCCG
* * * *
47174875 TGTCCCAGACATGGTCTTACACTGGCTCATC-TAT-TAAGCCGATGCCATGTCCCATACATGGTC
1 TGTCCCAAACAT-GTCTTACACTAGCTC-TCATATATATGCCAATGCCATGTCCCATACATGGTC
* * * *
47174938 TTACATTGACTATCAAAATCGAGGTCGACGCCA
64 TTACATTGACTCTCATAAT-GTGGTCGATG-CA
* *
47174971 TGTCCCAAACATGGTCTTACACTAGCTCTCATATATTCGTGCCGATGCCATGTCCCATACATGGT
1 TGTCCCAAACAT-GTCTTACACTAGCTCTCATATA-T-ATGCCAATGCCATGTCCCATACATGGT
* * * *
47175036 CTTACACTGACACATC-T--CGTAGTCGATGCA
63 CTTACATTGACTC-TCATAATGTGGTCGATGCA
* * * *
47175066 TGTCCCATACATGTCTTACACTAGCTCTCGTCTCA-ATGCCAATGCCATGTCCCAAACATGGTCT
1 TGTCCCAAACATGTCTTACACTAGCTCTCATAT-ATATGCCAATGCCATGTCCCATACATGGTCT
*
47175130 TACATTGGCTCTCATAATGTGGTCGATGC
65 TACATTGACTCTCATAATGTGGTCGATGC
47175159 TAGTTCCAGG
Statistics
Matches: 156, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
91 2 0.01
92 35 0.22
94 29 0.19
95 16 0.10
96 36 0.23
98 1 0.01
99 35 0.22
100 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
TGTCCCAAACATGTCTTACACTAGCTCTCATATATATGCCAATGCCATGTCCCATACATGGTCTT
ACATTGACTCTCATAATGTGGTCGATGCA
Found at i:47178214 original size:22 final size:21
Alignment explanation
Indices: 47178189--47178254 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 21
47178179 TATAAATTAA
47178189 ATCTCTAAGATTACAAAATCAT
1 ATCTCTAAGATTAC-AAATCAT
* *
47178211 ATCTTCTAAGATTGCATATCAT
1 ATC-TCTAAGATTACAAATCAT
*
47178233 A--TCTAAGATTGC-AATCAT
1 ATCTCTAAGATTACAAATCAT
47178251 ATCT
1 ATCT
47178255 AAGATTGCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 6 0.16
19 11 0.29
20 1 0.03
22 10 0.26
23 10 0.26
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (21 bp):
ATCTCTAAGATTACAAATCAT
Found at i:47178222 original size:23 final size:22
Alignment explanation
Indices: 47178192--47178236 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
47178182 AAATTAAATC
47178192 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
47178215 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
47178237 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:47178239 original size:19 final size:19
Alignment explanation
Indices: 47178215--47178288 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
47178205 AATCATATCT
47178215 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
47178234 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
47178252 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
47178271 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
47178289 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 18 0.35
19 34 0.65
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:47178261 original size:37 final size:38
Alignment explanation
Indices: 47178208--47178288 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
47178198 ATTACAAAAT
*
47178208 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCACATCTAAGATTG
47178244 CA-ATCATATCTAAGATTGCATATCACATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCACATCTAAGATTG
47178281 CATATCAT
1 CATATCAT
47178289 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCACATCTAAGATTG
Found at i:47204594 original size:18 final size:19
Alignment explanation
Indices: 47204563--47204599 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
47204553 AAATTAAAGT
47204563 ATTAATTCAACT-AATTAA
1 ATTAATTCAACTAAATTAA
47204581 ATTAATT-AACCTAAATTAA
1 ATTAATTCAA-CTAAATTAA
47204600 CCAAATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.12
18 9 0.53
19 6 0.35
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAATTCAACTAAATTAA
Found at i:47227121 original size:39 final size:39
Alignment explanation
Indices: 47227078--47227300 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
47227068 TCCTCGTTCA
* * * *
47227078 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCTCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
47227117 AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
47227156 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * *
47227196 AACGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCAC
1 AA-TGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
47227236 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
47227277 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47227301 CAGCATTCAA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 39 0.26
40 100 0.66
41 13 0.09
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:47227169 original size:40 final size:38
Alignment explanation
Indices: 47227043--47227300 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 38
47227033 AAATCACGTA
* * *
47227043 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
47227082 CCTTCGGGACATAGCCCGGTTTTAGTAACTCTCACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
47227121 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
47227161 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAACGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCACAA-TG
* *
47227201 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
47227241 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
47227281 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
47227301 CAGCATTCAA
Statistics
Matches: 179, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.01
39 52 0.29
40 111 0.62
41 14 0.08
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:47227309 original size:41 final size:41
Alignment explanation
Indices: 47227232--47227309 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47227222 CTTGTATCTC
* * *
47227232 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47227273 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47227310 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47232123 original size:39 final size:40
Alignment explanation
Indices: 47232022--47232206 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
47232012 TTGAATGATG
* * ** *
47232022 TCCGGGCTAACTCCCGAAGGC-TTTGTGCTAAGCGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
47232061 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
47232102 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47232141 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47232180 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
47232207 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:47232228 original size:79 final size:79
Alignment explanation
Indices: 47232075--47232239 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47232065 GGACTAAGAT
* * **
47232075 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47232140 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47232154 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47232217 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47232233 CCGAAGG
1 CCGAAGG
47232240 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47234967 original size:25 final size:25
Alignment explanation
Indices: 47234938--47234985 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47234928 CCTTATAATG
* * *
47234938 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
47234963 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
47234986 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:47235036 original size:9 final size:9
Alignment explanation
Indices: 47235024--47235080 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
47235014 TTTGATAAAC
47235024 ATGATATGT
1 ATGATATGT
*
47235033 ATGATATGCAC
1 ATGATATG--T
*
47235044 ATGACATGT
1 ATGATATGT
*
47235053 ATGATATGCAC
1 ATGATATG--T
47235064 ATGATATGT
1 ATGATATGT
47235073 ATGATATG
1 ATGATATG
47235081 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:47235047 original size:20 final size:20
Alignment explanation
Indices: 47235022--47235092 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
47235012 ATTTTGATAA
47235022 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
47235042 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
47235062 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
47235082 ACATGAGATGT
1 ACATGATATGT
47235093 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:47235069 original size:11 final size:11
Alignment explanation
Indices: 47235033--47235087 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
47235023 CATGATATGT
47235033 ATGATATGCAC
1 ATGATATGCAC
* *
47235044 ATGACATG--T
1 ATGATATGCAC
47235053 ATGATATGCAC
1 ATGATATGCAC
*
47235064 ATGATATG--T
1 ATGATATGCAC
47235073 ATGATATGCAC
1 ATGATATGCAC
47235084 ATGA
1 ATGA
47235088 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:47235216 original size:23 final size:23
Alignment explanation
Indices: 47235139--47235254 Score: 184
Period size: 22 Copynumber: 5.1 Consensus size: 23
47235129 AGGAAGTGCA
47235139 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
47235161 AAAGGGCTTATG-CCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATT
47235183 AAA-GGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
47235205 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
47235228 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
47235252 AAA
1 AAA
47235255 AGAGGCTAGG
Statistics
Matches: 88, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
21 8 0.09
22 36 0.41
23 22 0.25
24 22 0.25
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:47235271 original size:25 final size:24
Alignment explanation
Indices: 47235138--47235275 Score: 182
Period size: 22 Copynumber: 6.0 Consensus size: 24
47235128 GAGGAAGTGC
47235138 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
47235161 -AAAGGGCTTATG-CCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
47235182 CAAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
47235205 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47235228 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47235252 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
47235276 ATGATAAAGC
Statistics
Matches: 105, Mismatches: 3, Indels: 12
0.88 0.03 0.10
Matches are distributed among these distances:
21 9 0.09
22 34 0.32
23 20 0.19
24 31 0.30
25 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:47235501 original size:31 final size:31
Alignment explanation
Indices: 47235463--47235526 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
47235453 CGTTTACAGT
47235463 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
47235494 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
47235525 AA
1 AA
47235527 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:47243209 original size:19 final size:20
Alignment explanation
Indices: 47243185--47243234 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
47243175 ATTTTGATAA
47243185 ACATGATATGTATG-TATGC
1 ACATGATATGTATGATATGC
47243204 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
47243224 ACATGAGATGT
1 ACATGATATGT
47243235 TCATAATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:47243243 original size:20 final size:20
Alignment explanation
Indices: 47243185--47243244 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
47243175 ATTTTGATAA
* *
47243185 ACATGATATGTAT-GTATGC
1 ACATGAGATGTATCATATGC
* *
47243204 ACATGATATGTATGATATGC
1 ACATGAGATGTATCATATGC
47243224 ACATGAGATGT-TCATAATGC
1 ACATGAGATGTATCAT-ATGC
47243244 A
1 A
47243245 TTGGTTGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 16 0.44
20 20 0.56
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGAGATGTATCATATGC
Found at i:47243342 original size:23 final size:23
Alignment explanation
Indices: 47243278--47243393 Score: 173
Period size: 23 Copynumber: 5.1 Consensus size: 23
47243268 GAGGAAGTGC
*
47243278 AAAGGGCTTATG-CCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
47243300 AAAGGGCTTATG-CCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATT
* *
47243322 AAATGGCTCATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
47243345 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
47243368 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
47243391 AAA
1 AAA
47243394 AGAGGCTAGG
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
22 30 0.35
23 55 0.65
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:47243649 original size:30 final size:31
Alignment explanation
Indices: 47243603--47243665 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
47243593 CGTTTACAGT
47243603 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
47243634 AAAGGCTTC-GCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
47243664 AA
1 AA
47243666 TATGAAAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:47244837 original size:42 final size:42
Alignment explanation
Indices: 47244779--47244936 Score: 174
Period size: 42 Copynumber: 3.6 Consensus size: 42
47244769 TCGTTTTCTT
**
47244779 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT-
1 GATGCCATAGCCCAACTATGGTCTTACACATCTTCACAT-ATC
* * *
47244821 GATGCCATAGCCCAACTATGGTCTTAAACATATTCATATATC
1 GATGCCATAGCCCAACTATGGTCTTACACATCTTCACATATC
*
47244863 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATC
1 GATGCCATAGCCCAACTATGGTCTTACAC---AT--C-T-TCACATATC
*
47244912 GATGCCATAGCCCAGCTATGGTCTT
1 GATGCCATAGCCCAACTATGGTCTT
47244937 GCACGAATCA
Statistics
Matches: 99, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 61 0.62
45 2 0.02
48 1 0.01
49 33 0.33
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
GATGCCATAGCCCAACTATGGTCTTACACATCTTCACATATC
Found at i:47244921 original size:49 final size:48
Alignment explanation
Indices: 47244848--47244983 Score: 177
Period size: 49 Copynumber: 2.8 Consensus size: 48
47244838 ATGGTCTTAA
*
47244848 ACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATC
1 ACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATC
*
47244898 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTGCACGAATC
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
* * * * *
47244946 ACATATCTCA-CT-GATGCCATATCCTAGATATGGTCTTA
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
47244984 TACAATAGCA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
46 22 0.28
47 1 0.01
48 13 0.17
49 37 0.47
50 5 0.06
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
Found at i:47245086 original size:31 final size:31
Alignment explanation
Indices: 47245051--47245168 Score: 146
Period size: 31 Copynumber: 3.8 Consensus size: 31
47245041 CTTGTCACTT
*
47245051 GTAGCTGAAGCTACCACTATTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
47245082 GTAGCCGAAGCTACCATTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* *** *
47245113 GTAACTCTGGCTACCACTTTTCACTGATCAA
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
**
47245144 GTAGCAAAAGCTACCACTTTTCACT
1 GTAGCTGAAGCTACCACTTTTCACT
47245169 TGTCATTTGT
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:47245237 original size:50 final size:51
Alignment explanation
Indices: 47245151--47245272 Score: 201
Period size: 50 Copynumber: 2.4 Consensus size: 51
47245141 CAAGTAGCAA
* * *
47245151 AAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGTGTAGCCG
*
47245202 AAGCTATTACTTATCACTT-TCATTTGTCCTTGATCAAATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGTGTAGCCG
47245252 AAGCTATCACTTATCACTTGT
1 AAGCTATCACTTATCACTTGT
47245273 GGCCATGGTC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 48 0.74
51 17 0.26
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (51 bp):
AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGTGTAGCCG
Found at i:47249352 original size:16 final size:17
Alignment explanation
Indices: 47249331--47249420 Score: 116
Period size: 16 Copynumber: 5.4 Consensus size: 17
47249321 TATAACTTTA
47249331 ATAT-ATGCAATCTTAG
1 ATATGATGCAATCTTAG
47249347 ATAT-ATGCAATCTTAG
1 ATATGATGCAATCTTAG
*
47249363 ATATGATACAATCTTAG
1 ATATGATGCAATCTTAG
47249380 ATATGATGCAATC-TAG
1 ATATGATGCAATCTTAG
*
47249396 ATATGATATGC-ATCTTAA
1 ATATG--ATGCAATCTTAG
47249414 ATATGAT
1 ATATGAT
47249421 TGTAATCTTG
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
16 30 0.45
17 26 0.39
18 11 0.16
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
ATATGATGCAATCTTAG
Found at i:47249375 original size:33 final size:33
Alignment explanation
Indices: 47249338--47249420 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
47249328 TTAATATATG
47249338 CAATCTTAGATAT-ATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATGCAATC-TAGATATGATA
47249371 CAATCTTAGATATGATGCAATCTAGATATGATA
1 CAATCTTAGATATGATGCAATCTAGATATGATA
*
47249404 TGC-ATCTTAAATATGAT
1 --CAATCTTAGATATGAT
47249421 TGTAATCTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
33 24 0.52
34 21 0.46
35 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (33 bp):
CAATCTTAGATATGATGCAATCTAGATATGATA
Found at i:47249410 original size:17 final size:19
Alignment explanation
Indices: 47249333--47249429 Score: 106
Period size: 17 Copynumber: 5.6 Consensus size: 19
47249323 TAACTTTAAT
47249333 ATATGCAATCTTAG--AT-
1 ATATGCAATCTTAGATATG
47249349 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
47249368 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
47249385 --ATGCAATC-TAGATATG
1 ATATGCAATCTTAGATATG
*
47249401 ATATGC-ATCTTAAATATG
1 ATATGCAATCTTAGATATG
*
47249419 AT-TGTAATCTT
1 ATATGCAATCTT
47249430 GGAGATTTAA
Statistics
Matches: 70, Mismatches: 2, Indels: 16
0.80 0.02 0.18
Matches are distributed among these distances:
15 1 0.01
16 22 0.31
17 24 0.34
18 20 0.29
19 3 0.04
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.38
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:47255082 original size:20 final size:20
Alignment explanation
Indices: 47255008--47255082 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
47254998 CTTCTATTTC
*
47255008 AAAAAAAATGGA-AAAATAG
1 AAAAAAAATGGAGAAAAAAG
*
47255027 AAAATAATAA--GAGAAAAAAAA
1 AAAA-AA-AATGGAG-AAAAAAG
*
47255048 AAAAAAAAAGAGAGAAAAAAG
1 AAAAAAAATG-GAGAAAAAAG
47255069 AAAAAAAATGGAGA
1 AAAAAAAATGGAGA
47255083 GGCCAAGGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
19 8 0.18
20 8 0.18
21 26 0.58
22 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (20 bp):
AAAAAAAATGGAGAAAAAAG
Found at i:47256081 original size:43 final size:43
Alignment explanation
Indices: 47256033--47256172 Score: 121
Period size: 43 Copynumber: 3.3 Consensus size: 43
47256023 CACCTTAATC
47256033 CCCTAAGCAGTAGGGTAACAAGTTAAATTTATAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAAGTTAAATTTATAGATCTTATCT
** ** * *
47256076 CCCTAAGCAGTAGTGG--AGTAGATCGAA--GACTAG-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAAG-TTAAATTTA-TAGATCTT-ATCT
* **
47256117 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAAGTTAAATTTATAGATCTTATCT
47256160 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
47256173 TGGAGCAGAT
Statistics
Matches: 72, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
40 2 0.03
41 20 0.28
42 16 0.22
43 32 0.44
44 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAAGTTAAATTTATAGATCTTATCT
Found at i:47256166 original size:84 final size:84
Alignment explanation
Indices: 47256025--47256465 Score: 592
Period size: 84 Copynumber: 5.3 Consensus size: 84
47256015 AAATTCAGCA
* **
47256025 CCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTATAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
47256090 GGAGTAGATCGAAGACTAG
66 GGAGCAGATCGAAGACTAG
47256109 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
47256174 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTAG
* * *
47256193 CCTTAATCCCCTAAGCTGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
47256253 GGAGCAGATCGACGATGACTCG
66 GGAGCAGATCGA--A-GACTAG
* *
47256275 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCCCCTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
47256340 GGAGCAGATCGAAGACCCA-
66 GGAGCAGATCGAAGA-CTAG
* * * *
47256359 CCTTAATCCCCTAAGCATTAGGGTAACAAGTTAAATTTTCAGATCTTA--TCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
47256422 GGAGTAGATCGAAGACGATG
66 GGAGCAGATCGAAGACTA-G
*
47256442 CACCTTAACCCCCTAAGCAGTAGG
1 --CCTTAATCCCCTAAGCAGTAGG
47256466 ATCCAAGATG
Statistics
Matches: 319, Mismatches: 25, Indels: 25
0.86 0.07 0.07
Matches are distributed among these distances:
79 40 0.13
81 3 0.01
82 61 0.19
84 155 0.49
85 22 0.07
87 38 0.12
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTAG
Found at i:47256304 original size:166 final size:166
Alignment explanation
Indices: 47256023--47256465 Score: 585
Period size: 166 Copynumber: 2.6 Consensus size: 166
47256013 CAAAATTCAG
* ***
47256023 CACCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTATAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCATTAGGGTAACAAG---AATTCGCAGATCTTATCTCCCTAAGCAGTA
* *
47256088 GTGGAGTAGATCGA-AGACTAGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
63 GCGGAGTAGATCGAGAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* *
47256152 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
128 TCTTATCCCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
* *
47256191 CGCCTTAATCCCCTAAGC-TGTAGGGTAAC-AG-GTTCGCAGATCTTATCTCCCTAAGCAGTAGC
1 CACCTTAATCCCCTAAGCAT-TAGGGTAACAAGAATTCGCAGATCTTATCTCCCTAAGCAGTAGC
*
47256253 GGAGCAGATCGACGATGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
65 GGAGTAGATCGA-GA-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
*
47256318 TCTTATCCCCCTAAGTAGTAGTGGAGCAGATCGAAGACC
128 TCTTATCCCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
**
47256357 CACCTTAATCCCCTAAGCATTAGGGTAACAAGTTAAATTTTCAGATCTTA--TCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCATTAGGGTAACAAG---AATTCGCAGATCTTATCTCCCTAAGCAGTA
* *
47256420 GCGGAGTAGATCGA-AGACGATGCACCTTAACCCCCTAAGCAGTAGG
63 GCGGAGTAGATCGAGAGAC--T-CGCCTTAATCCCCTAAGCAGTAGG
47256466 ATCCAAGATG
Statistics
Matches: 243, Mismatches: 19, Indels: 25
0.85 0.07 0.09
Matches are distributed among these distances:
163 37 0.15
165 1 0.00
166 113 0.47
167 6 0.02
168 27 0.11
169 48 0.20
171 11 0.05
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (166 bp):
CACCTTAATCCCCTAAGCATTAGGGTAACAAGAATTCGCAGATCTTATCTCCCTAAGCAGTAGCG
GAGTAGATCGAGAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCT
TATCCCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
Found at i:47256555 original size:78 final size:78
Alignment explanation
Indices: 47256465--47257427 Score: 1238
Period size: 78 Copynumber: 12.3 Consensus size: 78
47256455 TAAGCAGTAG
* * * *
47256465 GATCCAAGATGATTTGACATCTCTGTATTA-AATGGGAACTAGATCGAAGACACAGCACATCTGA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGC-AGATCGAAGACACAGCAGATCTGA
*
47256529 TCTTTATTGAAGCA
65 TCTTCATTGAAGCA
* * *
47256543 GATCCAAGATGATTTGGAATCCCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGAT
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
*
47256608 CTTCATTTAAGCA
66 CTTCATTGAAGCA
* * * * * * *
47256621 AATCCAAGATTATTTGGCATCTTTGTATTAGACGAGGAGTAGATAGAAGACACAGCAGATCTGAT
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
47256686 CTTCATTGAAGCA
66 CTTCATTGAAGCA
* * * * *
47256699 GATCCAAGATGATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAATACATAACAGAT-TGGA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCT-GA
47256763 -CTTTCATTGAAGCA
65 TC-TTCATTGAAGCA
* * * * *
47256777 GATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATTGAAGACACAACAGATCTAAT
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
47256842 CTTCATTGAAGCA
66 CTTCATTGAAGCA
* * * *
47256855 GATCCAAGATGATTTGGCATCCCTGTATTAGACGGGGAACAGATCAAAGACACAGCAGATCTGAT
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
* *
47256920 CTTTATTGAAGTA
66 CTTCATTGAAGCA
* *
47256933 GATCCAAGATGATTTGACATCTTTGTATTAGACA-GGGAGCAGATCGAAGACACAGCAGATCTGA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGA-AGGGGAGCAGATCGAAGACACAGCAGATCTGA
*
47256997 TCTTCATTGAAGTA
65 TCTTCATTGAAGCA
* * * *
47257011 GATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAAATCGAAGACATAACAGAT-TGGA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCT-GA
*
47257075 CCTTCATTGAAGCA
65 TCTTCATTGAAGCA
* * ** * * *
47257089 GATCCAAGATGATTTGGCATATCTGTATTAGATGGGGAATAGATTGAAAACACAGCAGATCTGAC
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
47257154 CTTCATTGAAGCA
66 CTTCATTGAAGCA
* * * *
47257167 GATCCAAGATGATTTGGTATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGCAGATCTGAA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
*
47257232 CTTCATTAAAGCA
66 CTTCATTGAAGCA
* * * **
47257245 GATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAATAGAT-TGGA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCT-GA
*
47257309 CCTTCATTGAAGCA
65 TCTTCATTGAAGCA
* * * *
47257323 AATCCAAGATGATTTGGCATCTTTGTATTAGACA-GGGAGTAGATCGAAGACACAGCAGATTTGA
1 GATCCAAGATGATTTGGCATCTCTGTATTAGA-AGGGGAGCAGATCGAAGACACAGCAGATCTGA
*
47257387 TCTTTATTGAAGCA
65 TCTTCATTGAAGCA
*
47257401 GATCCAAGATGATTTGGCATCCCTGTA
1 GATCCAAGATGATTTGGCATCTCTGTA
47257428 CTGTCAGGGA
Statistics
Matches: 778, Mismatches: 95, Indels: 24
0.87 0.11 0.03
Matches are distributed among these distances:
77 4 0.01
78 764 0.98
79 10 0.01
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (78 bp):
GATCCAAGATGATTTGGCATCTCTGTATTAGAAGGGGAGCAGATCGAAGACACAGCAGATCTGAT
CTTCATTGAAGCA
Found at i:47257556 original size:78 final size:78
Alignment explanation
Indices: 47257454--47257748 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 78
47257444 CGAAGAAACA
* * * * *
47257454 GATTTGACATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCATG-TCTGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCA-GATCTGACCTTCATTGA
47257518 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
47257532 AATTTGGTATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
*
47257597 GCAGATCCGAGAT
66 GCAGATCCAAGAT
* * *
47257610 GATTTGGCATCCCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
47257675 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
47257688 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAAACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCAT
47257749 GTGTTTACAT
Statistics
Matches: 197, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
77 1 0.01
78 196 0.99
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:47257621 original size:199 final size:199
Alignment explanation
Indices: 47257255--47257626 Score: 552
Period size: 199 Copynumber: 1.9 Consensus size: 199
47257245 GATCCAAGAT
* ** *
47257255 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAATAGATTGGACCTTCATTGAA
1 GATTTGACATCTCCATATTAGACGGAGAGCAGATCAAAGACATAATAGATTGGACCTTCATTGAA
* * * * *
47257320 GCAAATCCAAGATGATTTGGCATCTTTGTATTAGACAGGGAGTAGATCGAAGACACAGCAGATTT
66 GCAAATCCAAGATAATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACACAGCAGATCT
*
47257385 GATCTTTATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTACTGTCAGGGAACAAATCGAAGA
131 GATCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTACTGTCAGGGAACAAATCGAAGA
47257450 AACA
196 AACA
* *
47257454 GATTTGACATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAT-G-TCT-GACCTTCATT
1 GATTTGACATCTCCATATTAGACGGAGAGCAGATCAAAGACATA--ATAGAT-TGGACCTTCATT
* * *
47257516 GAAGCAGATCCAAGATAATTTGGTATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGA
63 GAAGCAAATCCAAGATAATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACACAGCAGA
*
47257581 TCTGATCTTCATTGAAGCAGATCCGAGATGATTTGGCATCCCTGTA
128 TCTGATCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTA
47257627 TTAGACGGGG
Statistics
Matches: 154, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
199 150 0.97
200 2 0.01
201 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (199 bp):
GATTTGACATCTCCATATTAGACGGAGAGCAGATCAAAGACATAATAGATTGGACCTTCATTGAA
GCAAATCCAAGATAATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACACAGCAGATCT
GATCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTACTGTCAGGGAACAAATCGAAGA
AACA
Found at i:47257697 original size:277 final size:277
Alignment explanation
Indices: 47257192--47257704 Score: 787
Period size: 277 Copynumber: 1.9 Consensus size: 277
47257182 GGTATCTCTG
* *
47257192 TATTAGACGGGGAGCAGATCAAAGACACAGCAGATCTGAACTTCATTAAAGCAGATCCAAGATGA
1 TATTAGACGGAGAGCAGATCAAAGACACAGCAGATCTGAACTTCATTAAAGCAGATCCAAGATAA
* * *
47257257 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAATAGATTGGACCTTCATTGAAGC
66 TTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAAGC
** * *
47257322 AAATCCAAGATGATTTGGCATCTTTGTATTAGACAGGGAGTAGATCGAAGACACAGCAGATTTGA
131 AAATCCAAGATGATTTGGCATCCCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATCTGA
*
47257387 TCTTTATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTACTGTCAGGGAACAAATCGAAGAAA
196 TCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTACTGTCAGGGAACAAATCGAAGAAA
47257452 CAGATTTGACATCTCCA
261 CAGATTTGACATCTCCA
* * * * *
47257469 TATTCGACGGAGAGCAGATCGAAGACATAGCATG-TCTGACCTTCATTGAAGCAGATCCAAGATA
1 TATTAGACGGAGAGCAGATCAAAGACACAGCA-GATCTGAACTTCATTAAAGCAGATCCAAGATA
* * * *
47257533 ATTTGGTATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT-GATCTTCATTGAA
65 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACACAACAGAT-TGGACCTTCATTGAA
* * *
47257597 GCAGATCCGAGATGATTTGGCATCCCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
129 GCAAATCCAAGATGATTTGGCATCCCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATCT
*
47257662 GATCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
194 GATCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTA
47257705 TTAGACGGGG
Statistics
Matches: 211, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
277 209 0.99
278 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (277 bp):
TATTAGACGGAGAGCAGATCAAAGACACAGCAGATCTGAACTTCATTAAAGCAGATCCAAGATAA
TTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACACAACAGATTGGACCTTCATTGAAGC
AAATCCAAGATGATTTGGCATCCCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATCTGA
TCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCCTGTACTGTCAGGGAACAAATCGAAGAAA
CAGATTTGACATCTCCA
Found at i:47257846 original size:45 final size:45
Alignment explanation
Indices: 47257688--47257915 Score: 182
Period size: 45 Copynumber: 5.1 Consensus size: 45
47257678 GATCCAAGAT
* * *
47257688 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAAACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC--AGAGATAACA
* * * * * * *
47257735 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCA-AGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGAT-CAGAGATAACA
*
47257780 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAGATAACA
* * * *
47257825 GATTTTGCATCTCTGTGTTAGACGGAGAGCAGAT-TGAAGA-AACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAG-AGATAACA
* * *
47257869 GATTTGGCGTCTCT-TATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAGATAACA
47257913 GAT
1 GAT
47257916 ATTGCCTTCC
Statistics
Matches: 141, Mismatches: 29, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
43 21 0.15
44 29 0.21
45 62 0.44
46 5 0.04
47 18 0.13
48 5 0.04
49 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAGATAACA
Found at i:47258270 original size:17 final size:19
Alignment explanation
Indices: 47258248--47258325 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
47258238 ATGGAAATAT
47258248 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
47258265 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
47258284 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
47258301 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
47258319 AATCTTA
1 AATCTTA
47258326 GAAGATATGA
Statistics
Matches: 56, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
17 22 0.39
18 9 0.16
19 25 0.45
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:47258280 original size:19 final size:19
Alignment explanation
Indices: 47258256--47258327 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
47258246 ATAATCTTCA
47258256 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
47258275 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
47258294 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
47258311 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
47258328 AGATATGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.31
18 10 0.20
19 25 0.49
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:47258350 original size:23 final size:21
Alignment explanation
Indices: 47258256--47258337 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 21
47258246 ATAATCTTCA
47258256 ATGATATGCAATCTT---AGAT
1 ATGAT-TGCAATCTTAGAAGAT
47258275 ATGATATGCAATCTT---AGAT
1 ATGAT-TGCAATCTTAGAAGAT
*
47258294 ATGA-TACAATCTTAG---AT
1 ATGATTGCAATCTTAGAAGAT
47258311 ATGATTGCAATCTTAGAAGAT
1 ATGATTGCAATCTTAGAAGAT
47258332 ATGATT
1 ATGATT
47258338 TTGTAATCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
17 14 0.25
18 10 0.18
19 23 0.42
21 8 0.15
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (21 bp):
ATGATTGCAATCTTAGAAGAT
Found at i:47259762 original size:12 final size:12
Alignment explanation
Indices: 47259747--47259772 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
47259737 CAAAACTCAA
47259747 TTTAAAAATGGT
1 TTTAAAAATGGT
47259759 TTTAAAAATGGT
1 TTTAAAAATGGT
47259771 TT
1 TT
47259773 CGACACGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:47265242 original size:22 final size:22
Alignment explanation
Indices: 47265214--47265257 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
47265204 ACTCAAGTGT
47265214 TGGTAAAGTTTTTAGTTTGGTC
1 TGGTAAAGTTTTTAGTTTGGTC
47265236 TGGTAAAGTTTTTAGTTTGGTC
1 TGGTAAAGTTTTTAGTTTGGTC
47265258 AGGATATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.27, T:0.50
Consensus pattern (22 bp):
TGGTAAAGTTTTTAGTTTGGTC
Found at i:47270193 original size:25 final size:25
Alignment explanation
Indices: 47270159--47270212 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
47270149 ACAATCGAGC
47270159 TAGGTCACATGAGTGGTGCTAAGTG
1 TAGGTCACATGAGTGGTGCTAAGTG
47270184 TAGGTCACATGAGTGGTGCTAAGTG
1 TAGGTCACATGAGTGGTGCTAAGTG
47270209 TAGG
1 TAGG
47270213 CCACTATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.24, C:0.11, G:0.37, T:0.28
Consensus pattern (25 bp):
TAGGTCACATGAGTGGTGCTAAGTG
Found at i:47280024 original size:22 final size:22
Alignment explanation
Indices: 47279997--47280041 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
47279987 TTACTTACAA
47279997 TTTAATATCTTATTATTAAAAC
1 TTTAATATCTTATTATTAAAAC
* * *
47280019 TTTAATTTCTTTTTTTTAAAAC
1 TTTAATATCTTATTATTAAAAC
47280041 T
1 T
47280042 CAAGGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTAATATCTTATTATTAAAAC
Found at i:47282809 original size:21 final size:22
Alignment explanation
Indices: 47282784--47282832 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
47282774 ACAATTTCAA
47282784 ATTTTAAGT-AA-TATCATTAAT
1 ATTTTAAGTAAATTAT-ATTAAT
*
47282805 ATTTT-ATTAAATTATATTAAT
1 ATTTTAAGTAAATTATATTAAT
47282826 ATTTTAA
1 ATTTTAA
47282833 TAGTTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 18 0.75
22 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATTTTAAGTAAATTATATTAAT
Found at i:47287376 original size:20 final size:20
Alignment explanation
Indices: 47287327--47287425 Score: 71
Period size: 20 Copynumber: 5.0 Consensus size: 20
47287317 GCTTGTATGG
**
47287327 GTTTGCACTTCAGTGCCTCT
1 GTTTGCACTTTGGTGCCTCT
* *
47287347 G-TTACACTTTGGTGTCTCT
1 GTTTGCACTTTGGTGCCTCT
47287366 GTTTGCACTTTGGTGCC-CTT
1 GTTTGCACTTTGGTGCCTC-T
* *
47287386 GATTGCACAATT-GTGCCTCT
1 GTTTGCAC-TTTGGTGCCTCT
* *
47287406 -TTCTGTACTTCGGTGCCTCT
1 GTT-TGCACTTTGGTGCCTCT
47287426 TTTATGCATC
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
19 18 0.30
20 40 0.66
21 3 0.05
ACGTcount: A:0.10, C:0.26, G:0.21, T:0.42
Consensus pattern (20 bp):
GTTTGCACTTTGGTGCCTCT
Found at i:47290409 original size:40 final size:40
Alignment explanation
Indices: 47290352--47290621 Score: 416
Period size: 40 Copynumber: 6.8 Consensus size: 40
47290342 ATTTGAATAC
* * * *
47290352 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
47290392 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
47290432 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
47290472 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
47290512 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
47290552 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
47290592 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
47290622 TTGTGGTTAT
Statistics
Matches: 216, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
40 213 0.99
41 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:47291511 original size:29 final size:29
Alignment explanation
Indices: 47291476--47291534 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
47291466 ATGAATCTAC
47291476 TTTCATATGAAAGTAACGAAACAATCATA
1 TTTCATATGAAAGTAACGAAACAATCATA
47291505 TTTCATATGAAAGTAACGAAACAATCATA
1 TTTCATATGAAAGTAACGAAACAATCATA
47291534 T
1 T
47291535 GAACAGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (29 bp):
TTTCATATGAAAGTAACGAAACAATCATA
Found at i:47296530 original size:40 final size:40
Alignment explanation
Indices: 47296475--47296729 Score: 354
Period size: 40 Copynumber: 6.4 Consensus size: 40
47296465 GGATGATAAC
* * *
47296475 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
47296515 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
47296555 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
47296595 GGATAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * **
47296635 GGCTAAGTCCCAAAGGCATTGGTGTTAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
47296675 GGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
47296714 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
47296730 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
39 16 0.08
40 179 0.92
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:47304703 original size:40 final size:40
Alignment explanation
Indices: 47304647--47304890 Score: 348
Period size: 40 Copynumber: 6.1 Consensus size: 40
47304637 TGGATGATAA
* * *
47304647 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
47304687 TCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47304727 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47304767 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
47304807 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
47304847 CCGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
47304887 CCGG
1 CCGG
47304891 TTAAATCCCA
Statistics
Matches: 186, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 183 0.98
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47327334 original size:27 final size:27
Alignment explanation
Indices: 47327304--47327789 Score: 548
Period size: 27 Copynumber: 18.0 Consensus size: 27
47327294 AAGTACTCCT
*
47327304 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* *
47327331 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
** * *
47327358 GATTTTTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
**
47327385 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* *
47327412 AATTTATAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
*
47327439 -AGTTTATAGAATTACCATTTTACCCTC
1 GA-TTTACAGAATTACCATTTTACCCTC
47327466 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
*
47327493 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCATTTTACCCTC
*
47327520 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* ** * *
47327547 AATTTGTAAAATTACTATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* *
47327574 AATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
47327601 -AGTTTACAGAATTACCATTTTACCCTC
1 GA-TTTACAGAATTACCATTTTACCCTC
* * *
47327628 GATTTACAAAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
*
47327655 -ACTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCATTTTACCCTC
* ** * **
47327682 AATTTGTAAAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* ***
47327709 GATTTATAGAATTACTGGTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* * *
47327736 GGTTTACAAAATTATCATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* *
47327763 GATTTATAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
47327790 AATTGTGAAA
Statistics
Matches: 397, Mismatches: 54, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.01
27 389 0.98
28 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCATTTTACCCTC
Found at i:47327931 original size:27 final size:27
Alignment explanation
Indices: 47327806--47327920 Score: 176
Period size: 27 Copynumber: 4.3 Consensus size: 27
47327796 GAAATTACTA
*
47327806 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
47327833 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
47327860 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
47327887 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
47327914 AGATACC
1 AAATACC
47327921 TTTGTGGGGT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:47327950 original size:54 final size:54
Alignment explanation
Indices: 47327806--47327935 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
47327796 GAAATTACTA
* * * *
47327806 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCG
*
47327860 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCG
* * *
47327914 AGATACCTTTGTGGGGTA-AAAT
1 AAATACCCTTGTAGGGTAGAAAT
47327936 GACCATTTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 4 0.06
54 64 0.94
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCG
Found at i:47328181 original size:27 final size:26
Alignment explanation
Indices: 47328139--47328220 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
47328129 GGAGGAAGCA
*
47328139 TTCTGGTGGCTATGCCACAAGTATCTG
1 TTCTGGTGGCTCTGCCACAA-TATCTG
47328166 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* * *
47328192 TATCTGGTGACCCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
47328219 TT
1 TT
47328221 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:47328340 original size:22 final size:22
Alignment explanation
Indices: 47328308--47328366 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
47328298 CCCGTTATTA
*
47328308 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
47328330 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
47328352 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
47328367 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:47328553 original size:27 final size:27
Alignment explanation
Indices: 47328531--47328604 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
47328521 TAGGTGGGTT
*
47328531 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
47328558 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* * *
47328585 TGTCACGATATTTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
47328605 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:47328731 original size:6 final size:6
Alignment explanation
Indices: 47328722--47329078 Score: 310
Period size: 6 Copynumber: 58.8 Consensus size: 6
47328712 TTGCATTCAC
* *
47328722 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
47328771 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* *
47328819 ATTCT- ATCACTTA ATTCTG ATTCTG ATTCT- ATTACTG ATTCTG ATTCTG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* *
47328868 ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCT- ATTACTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * *
47328916 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
* *
47328965 ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
47329013 -TCACCTA ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG -TTACTG
1 AT--TCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATT-CTG
47329062 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
47329079 CATTTTGGTT
Statistics
Matches: 288, Mismatches: 31, Indels: 64
0.75 0.08 0.17
Matches are distributed among these distances:
5 26 0.09
6 232 0.81
7 24 0.08
8 6 0.02
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:47328869 original size:85 final size:85
Alignment explanation
Indices: 47328722--47329078 Score: 360
Period size: 85 Copynumber: 4.2 Consensus size: 85
47328712 TTGCATTCAC
* * * * *
47328722 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGAT--TCT-GTTACTAATACTGA
1 ATTCTGATTCTGATTCTATCA-CTAATTCTGATTCTGATTCT-ATCACCTAATT-CTGATTCTGA
**
47328784 TTCTGATTCTGATTCTGTTACTG
63 TTCTGATTCTGATTCTAATACTG
47328807 ATTCTGATTCTGATTCTATCACTTAATTCTGATTCTGATTCTAT----T-A--CTGATTCTGATT
1 ATTCTGATTCTGATTCTATCAC-TAATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATT
47328865 CTGATTCTG-TTACTAATACTG
65 CTGATTCTGATT-CTAATACTG
* * *
47328886 ATTCTGATTCTGATTCTATTACTGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTC
1 ATTCTGATTCTGATTCTATCACTAATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTC
47328951 TGATTCTG-TTACTAATACTG
66 TGATTCTGATT-CTAATACTG
* * * * *
47328971 ATTCTGATTCTGATTCTGTTACTGATTCTGATTTTGATTCTGTCACCTAATTCTGATTCTGTTAC
1 ATTCTGATTCTGATTCTATCACTAATTCTGATTCTGATTCTATCACCTAATTCTGATTCTG--A-
* **
47329036 TAATATTGATTCTGATTCTGTTACTG
63 T--T-CTGATTCTGATTCTAATACTG
47329062 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
47329079 CATTTTGGTT
Statistics
Matches: 242, Mismatches: 14, Indels: 26
0.86 0.05 0.09
Matches are distributed among these distances:
78 21 0.09
79 47 0.19
82 2 0.01
83 1 0.00
84 3 0.01
85 131 0.54
87 1 0.00
88 1 0.00
90 1 0.00
91 32 0.13
92 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTATCACTAATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTC
TGATTCTGATTCTAATACTG
Found at i:47330930 original size:9 final size:9
Alignment explanation
Indices: 47330916--47330940 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
47330906 TATTTGATTA
47330916 TATAAATTT
1 TATAAATTT
47330925 TATAAATTT
1 TATAAATTT
47330934 TATAAAT
1 TATAAAT
47330941 ATATGAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TATAAATTT
Found at i:47331044 original size:34 final size:32
Alignment explanation
Indices: 47330980--47331044 Score: 85
Period size: 34 Copynumber: 2.0 Consensus size: 32
47330970 CCGAAATATA
*
47330980 TTAAGTTCTTTGAATAATGAATTTTAATGGAG
1 TTAAGTTCTTTGAATAATGAATTTCAATGGAG
* *
47331012 TTAAGTTCTGTTTGAATGATGAATTTCGATGGA
1 TTAAGTTC--TTTGAATAATGAATTTCAATGGA
47331045 TATATGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 8 0.29
34 20 0.71
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.43
Consensus pattern (32 bp):
TTAAGTTCTTTGAATAATGAATTTCAATGGAG
Found at i:47336552 original size:11 final size:11
Alignment explanation
Indices: 47336536--47336567 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
47336526 TTGATCATAA
47336536 GAATTTGAATT
1 GAATTTGAATT
47336547 GAATTTGAATT
1 GAATTTGAATT
*
47336558 TAATTTGAAT
1 GAATTTGAAT
47336568 GGGGAGTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (11 bp):
GAATTTGAATT
Found at i:47336554 original size:6 final size:6
Alignment explanation
Indices: 47336536--47336567 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
47336526 TTGATCATAA
47336536 GAATTT GAA-TT GAATTT GAATTT -AATTT GAAT
1 GAATTT GAATTT GAATTT GAATTT GAATTT GAAT
47336568 GGGGAGTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.42
6 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (6 bp):
GAATTT
Found at i:47338286 original size:54 final size:55
Alignment explanation
Indices: 47338207--47338343 Score: 165
Period size: 54 Copynumber: 2.5 Consensus size: 55
47338197 TCGTTAAGAC
*
47338207 CCCT-AATTTGTAAAATTACTGAAATACCCCCT-ACTTGTAAAATTACT-AAGATA
1 CCCTCAATTTGTAAAATTACCGAAATACCCCCTGACTTGTAAAATTACTGAA-ATA
* * * * *
47338260 CCCTCGATTTGTAAAATTACCAAAATA-CCCTTGATTTGTAAAATTATTGAAATA
1 CCCTCAATTTGTAAAATTACCGAAATACCCCCTGACTTGTAAAATTACTGAAATA
* *
47338314 CCCTCAATTTGTGAAATTATCGAAATACCC
1 CCCTCAATTTGTAAAATTACCGAAATACCC
47338344 TTATAGGGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
53 8 0.11
54 58 0.83
55 4 0.06
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (55 bp):
CCCTCAATTTGTAAAATTACCGAAATACCCCCTGACTTGTAAAATTACTGAAATA
Found at i:47338344 original size:27 final size:26
Alignment explanation
Indices: 47338207--47338344 Score: 134
Period size: 27 Copynumber: 5.2 Consensus size: 26
47338197 TCGTTAAGAC
47338207 CCCT-AATTTGTAAAATTACTGAAATA
1 CCCTCAATTTGTAAAATTAC-GAAATA
* * * *
47338233 CCCCCTACTTGTAAAATTACTAAGATA
1 CCCTCAATTTGTAAAATTACGAA-ATA
* *
47338260 CCCTCGATTTGTAAAATTACCAAAATA
1 CCCTCAATTTGTAAAATTA-CGAAATA
** *
47338287 CCCTTGATTTGTAAAATTATTGAAATA
1 CCCTCAATTTGTAAAATTA-CGAAATA
*
47338314 CCCTCAATTTGTGAAATTATCGAAATA
1 CCCTCAATTTGTAAAATTA-CGAAATA
47338341 CCCT
1 CCCT
47338345 TATAGGGTAG
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.05
27 85 0.91
28 3 0.03
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (26 bp):
CCCTCAATTTGTAAAATTACGAAATA
Found at i:47338367 original size:54 final size:54
Alignment explanation
Indices: 47338243--47338371 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
47338233 CCCCCTACTT
* * **
47338243 GTAAAATTACTAAGATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTT
1 GTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATGG
* * * * *
47338297 GTAAAATTATTGAAATACCCTCAATTTGTGAAATTATCGAAATACCCTT-ATAGG
1 GTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGAT-GG
**
47338351 GTAGGATTACTAAAATACCCT
1 GTAAAATTACTAAAATACCCT
47338372 TAAAGGGTAA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.03
54 59 0.97
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (54 bp):
GTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATGG
Found at i:47341466 original size:15 final size:15
Alignment explanation
Indices: 47341446--47341476 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
47341436 CAATCTTACC
47341446 TTAGTTTAGTCTACA
1 TTAGTTTAGTCTACA
47341461 TTAGTTTAGTCTACA
1 TTAGTTTAGTCTACA
47341476 T
1 T
47341477 GTTAGACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (15 bp):
TTAGTTTAGTCTACA
Found at i:47351375 original size:15 final size:15
Alignment explanation
Indices: 47351355--47351386 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47351345 CATTTCACTA
*
47351355 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
47351370 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
47351385 TT
1 TT
47351387 TGTATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:47352565 original size:19 final size:19
Alignment explanation
Indices: 47352541--47352580 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
47352531 ATTAATTTTG
47352541 ATCAAGTAAAATT-AAATTA
1 ATCAAGT-AAATTAAAATTA
*
47352560 ATCAAGTTAATTAAAATTA
1 ATCAAGTAAATTAAAATTA
47352579 AT
1 AT
47352581 TTTCAAGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
ATCAAGTAAATTAAAATTA
Found at i:47357439 original size:12 final size:12
Alignment explanation
Indices: 47357422--47357446 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47357412 AATTTGGATG
47357422 TTATTATTATTT
1 TTATTATTATTT
47357434 TTATTATTATTT
1 TTATTATTATTT
47357446 T
1 T
47357447 GTATGTCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:47359324 original size:27 final size:27
Alignment explanation
Indices: 47359294--47359355 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
47359284 ATTTACTAAA
47359294 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCTAAG-ATGCAAAATTACCACT
* *
47359321 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCACT
47359347 ATACCCCTA
1 ATACCCCTA
47359356 GGGTTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCACT
Found at i:47359505 original size:28 final size:28
Alignment explanation
Indices: 47359460--47359575 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
47359450 GGAAGAAGCG
*
47359460 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
47359488 TTCTGGTGGCTCTACCACAAATATTTGA
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
47359516 TTCTGGTGGCACTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
47359544 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
47359570 TTCTGG
1 TTCTGG
47359576 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
26 5 0.07
27 8 0.11
28 62 0.83
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:47364328 original size:27 final size:27
Alignment explanation
Indices: 47364291--47364495 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
47364281 TAAATTGTAC
47364291 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
47364318 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47364345 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47364371 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47364399 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47364427 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47364454 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47364481 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47364496 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47364430 original size:109 final size:108
Alignment explanation
Indices: 47364292--47364495 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
47364282 AAATTGTACA
* *
47364292 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
47364357 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
47364400 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
47364465 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
47364496 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:47372567 original size:27 final size:27
Alignment explanation
Indices: 47372530--47372733 Score: 257
Period size: 27 Copynumber: 7.6 Consensus size: 27
47372520 TAAATTGTAC
47372530 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
47372557 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47372584 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47372610 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
47372638 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
47372665 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47372692 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47372719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47372734 GACTCAATAT
Statistics
Matches: 155, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47376466 original size:24 final size:24
Alignment explanation
Indices: 47376417--47376466 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
47376407 TACAAAATCG
* *
47376417 AAATCTAGATCCTAAATTTTCCCT
1 AAATCTAGATCATAAATTTTCACT
*
47376441 AAATCTAGACTCATATATTTT-ACT
1 AAATCTAGA-TCATAAATTTTCACT
47376465 AA
1 AA
47376467 TTTTTTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATCTAGATCATAAATTTTCACT
Found at i:47377636 original size:46 final size:46
Alignment explanation
Indices: 47377532--47377660 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 46
47377522 ATGTAACCCG
47377532 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAG-T
* * * *
47377578 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A-T
1 CCA-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGC-CTAGT
47377624 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47377661 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.03
46 62 0.87
47 2 0.03
48 4 0.06
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAGT
Found at i:47385117 original size:93 final size:93
Alignment explanation
Indices: 47385009--47385180 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
47384999 CGCCCATAAG
* *
47385009 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
47385074 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
47385102 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
47385167 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
47385181 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:47385177 original size:46 final size:46
Alignment explanation
Indices: 47385002--47385177 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
47384992 TGTAACCCGC
* * *
47385002 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
47385048 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
47385098 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
47385141 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47385178 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 65 0.58
47 30 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.