Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 144 of 311
Found at i:48762325 original size:17 final size:18
Alignment explanation
Indices: 48762288--48762326 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48762278 TTAAAAAATT
* *
48762288 ATATTTTTAAAATAATTA
1 ATATTTTAAAAATAATAA
48762306 ATATTTTAAAAATAA-AA
1 ATATTTTAAAAATAATAA
48762323 ATAT
1 ATAT
48762327 AAGATACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATTTTAAAAATAATAA
Found at i:48763524 original size:57 final size:59
Alignment explanation
Indices: 48763441--48763561 Score: 158
Period size: 57 Copynumber: 2.1 Consensus size: 59
48763431 TTTTTCAAAT
* * *
48763441 CATTTTCATTTTTCATTTTGGAGAAAATCACATTCATTTCCAAAT-TATTT-CATTTCTC
1 CATTTTCATTTTTCATTTTAGAGAAAACCACAATCATTTCCAAATGT-TTTACATTTCTC
** *
48763499 CATTTTCA-TTTTCATTTTAGAGAAAACCTTAATCATTTCCAAATGTTTTATATTTCTC
1 CATTTTCATTTTTCATTTTAGAGAAAACCACAATCATTTCCAAATGTTTTACATTTCTC
48763557 CATTT
1 CATTT
48763562 CACCATTTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 34 0.62
58 21 0.38
ACGTcount: A:0.28, C:0.18, G:0.05, T:0.49
Consensus pattern (59 bp):
CATTTTCATTTTTCATTTTAGAGAAAACCACAATCATTTCCAAATGTTTTACATTTCTC
Found at i:48771958 original size:28 final size:28
Alignment explanation
Indices: 48771892--48771983 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
48771882 ATGTACTAGA
48771892 ATACCCCTATGTATGCAAAATTACCA-T
1 ATACCCCTATGTATGCAAAATTACCATT
48771919 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
48771947 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
48771975 ATACCCCTA
1 ATACCCCTA
48771984 GGGTAAATTT
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
27 27 0.44
28 35 0.56
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:48772130 original size:28 final size:29
Alignment explanation
Indices: 48772089--48772151 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
48772079 AGGAAGCGTC
*
48772089 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
48772117 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
48772146 CTGGTG
1 CTGGTG
48772152 ACTCTGTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:48779497 original size:8 final size:8
Alignment explanation
Indices: 48779484--48779515 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
48779474 CTAGATCGGC
48779484 AAAAGCCG
1 AAAAGCCG
48779492 AAAAGCCG
1 AAAAGCCG
*
48779500 AAATGCCG
1 AAAAGCCG
48779508 AAAAGCCG
1 AAAAGCCG
48779516 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:48779783 original size:27 final size:27
Alignment explanation
Indices: 48779748--48779832 Score: 127
Period size: 27 Copynumber: 3.1 Consensus size: 27
48779738 ACTAGAATAC
48779748 CCCTATGTATGCAAAATTACCATTATA
1 CCCTATGTATGCAAAATTACCATTATA
*
48779775 CCCTATGTATGCAAAATTGCCATTATA
1 CCCTATGTATGCAAAATTACCATTATA
*
48779802 CCCCTATGTATGCAAAATGACC-TCTATA
1 -CCCTATGTATGCAAAATTACCAT-TATA
48779830 CCC
1 CCC
48779833 CTAGGGTAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
27 30 0.57
28 23 0.43
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.31
Consensus pattern (27 bp):
CCCTATGTATGCAAAATTACCATTATA
Found at i:48779815 original size:28 final size:28
Alignment explanation
Indices: 48779744--48779835 Score: 136
Period size: 28 Copynumber: 3.3 Consensus size: 28
48779734 ATGTACTAGA
*
48779744 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTGCCATT
48779772 ATA-CCCTATGTATGCAAAATTGCCATT
1 ATACCCCTATGTATGCAAAATTGCCATT
48779799 ATACCCCTATGTATGCAAAA-TGACC-TCT
1 ATACCCCTATGTATGCAAAATTG-CCAT-T
48779827 ATACCCCTA
1 ATACCCCTA
48779836 GGGTAAATTT
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
27 29 0.48
28 31 0.52
ACGTcount: A:0.34, C:0.27, G:0.09, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTGCCATT
Found at i:48780001 original size:29 final size:28
Alignment explanation
Indices: 48779941--48780003 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
48779931 AGGAAGCGTC
* * *
48779941 CTGGTGGCTATGCCACAAATTATTTGTT
1 CTGGTGGCTATGCCACAAAATATCTATT
48779969 CTGGTGGC-ACTGCCACAAAATATCTATAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-T
48779998 CTGGTG
1 CTGGTG
48780004 ACTCTGTCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 22 0.73
29 7 0.23
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCTATGCCACAAAATATCTATT
Found at i:48789683 original size:68 final size:64
Alignment explanation
Indices: 48789567--48789825 Score: 224
Period size: 68 Copynumber: 3.9 Consensus size: 64
48789557 TGGATGATAC
** * * *
48789567 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
48789631 A
64 A
* *
48789632 AGACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGATAAGAGAGC
1 AG--A-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGC
*
48789696 TACG
61 TACA
* * * *
48789700 GGATATATGTAGCTAGGTCGCATGTGTGGCTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
48789763 TACA
61 TACA
* * *
48789767 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
48789826 CGAACTCTAT
Statistics
Matches: 157, Mismatches: 22, Indels: 32
0.74 0.10 0.15
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 7 0.04
66 18 0.11
67 33 0.21
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACA
Found at i:48814686 original size:14 final size:15
Alignment explanation
Indices: 48814667--48814695 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48814657 CAAGTATGAT
48814667 AAATTATT-TTTTAG
1 AAATTATTATTTTAG
48814681 AAATTATTATTTTAG
1 AAATTATTATTTTAG
48814696 GTTGTCTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
AAATTATTATTTTAG
Found at i:48821809 original size:10 final size:11
Alignment explanation
Indices: 48821784--48821815 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
48821774 ATTTAATTAA
48821784 TTTTTAAACAG
1 TTTTTAAACAG
48821795 TTTTTAAACAG
1 TTTTTAAACAG
*
48821806 TTTTTGAACA
1 TTTTTAAACA
48821816 CCTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (11 bp):
TTTTTAAACAG
Found at i:48822932 original size:48 final size:48
Alignment explanation
Indices: 48822850--48823128 Score: 306
Period size: 48 Copynumber: 5.8 Consensus size: 48
48822840 ATACTAGGGT
*
48822850 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAA
* * * * * * **
48822898 TATGTGAGCTAGAGTAAGACCATGTTTGGAACATGACATCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAA
* **
48822946 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAA
* * * *
48822994 TATGACAGCTAGTGTAAGACCATGCCTGGGACATGGCATTGGCCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAA
* * * * * ***
48823042 TATGTGAGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGCATTGT
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAA
* * * *
48823090 TATGTGAGCCAGTGTAAGAACATGTCTGGGGCATGGCAT
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
48823129 TCGCACCGAT
Statistics
Matches: 193, Mismatches: 38, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 193 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAA
Found at i:48823114 original size:144 final size:144
Alignment explanation
Indices: 48822850--48823128 Score: 441
Period size: 144 Copynumber: 1.9 Consensus size: 144
48822840 ATACTAGGGT
* * *
48822850 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCTAGAGTAA
1 TATGACAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGAGTAA
* *
48822915 GACCATGTTTGGAACATGACATCGACATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGACAT
66 GACCATGTTTGGAACATGACATCGACATTGATATGAGAGCCAGTGTAAGAACATGTCTGGGACAT
48822980 GGCATCGACATTGA
131 GGCATCGACATTGA
* *
48822994 TATGACAGCTAGTGTAAGACCATGCCTGGGACATGGCATTGGCCTCAATATGTGAGCCAGTGTAA
1 TATGACAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGAGTAA
* * * * * *
48823059 GACCATGTTTGGAATATGGCATCGGCATTGTTATGTGAGCCAGTGTAAGAACATGTCTGGGGCAT
66 GACCATGTTTGGAACATGACATCGACATTGATATGAGAGCCAGTGTAAGAACATGTCTGGGACAT
48823124 GGCAT
131 GGCAT
48823129 TCGCACCGAT
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
144 122 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (144 bp):
TATGACAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGAGTAA
GACCATGTTTGGAACATGACATCGACATTGATATGAGAGCCAGTGTAAGAACATGTCTGGGACAT
GGCATCGACATTGA
Found at i:48832433 original size:46 final size:46
Alignment explanation
Indices: 48832377--48832546 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
48832367 TGGTTGAGCA
*
48832377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAAGG
*
48832423 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CG--TGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATG-GATGCAA--AGG
* ** *
48832468 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAAGG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAAGG
* * *
48832516 CCCGAGCTCATTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
48832547 TTAGGGGCAG
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 2 0.02
45 2 0.02
46 54 0.52
47 27 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAAGG
Found at i:48832533 original size:93 final size:93
Alignment explanation
Indices: 48832374--48832544 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
48832364 GGATGGTTGA
* * *
48832374 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAAGGCCCGAACTCATTGAGT
48832439 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** * *
48832467 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAAGGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAAGGCCCGAACTCATTGAGT
48832532 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
48832545 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACGTATGGATGCAAAGGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48839607 original size:47 final size:47
Alignment explanation
Indices: 48839489--48839660 Score: 180
Period size: 47 Copynumber: 3.7 Consensus size: 47
48839479 GGATGGTTGA
* *
48839489 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
* *
48839537 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AG
* * *
48839582 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
*
48839629 G---CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
48839661 TAGGGGCGGG
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
44 29 0.27
45 4 0.04
46 29 0.27
47 30 0.28
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAG
Found at i:48844550 original size:4 final size:4
Alignment explanation
Indices: 48844522--48844568 Score: 67
Period size: 4 Copynumber: 11.5 Consensus size: 4
48844512 ATGTAATTTG
* *
48844522 AAAT CAAAT ATAT AAAT ATAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
48844569 TAATAATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
4 34 0.89
5 4 0.11
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:48844849 original size:11 final size:11
Alignment explanation
Indices: 48844835--48844864 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
48844825 AATATAAAGT
48844835 TAATGATACAA
1 TAATGATACAA
*
48844846 TAATAATACAA
1 TAATGATACAA
48844857 TAATGATA
1 TAATGATA
48844865 AACATAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (11 bp):
TAATGATACAA
Found at i:48846619 original size:177 final size:178
Alignment explanation
Indices: 48846316--48846790 Score: 625
Period size: 179 Copynumber: 2.7 Consensus size: 178
48846306 TTCGGTCCGC
* * * * * * **
48846316 TCCAATATAATTTC-AAG-GAAAAGGGATTTGTAGTTTTGATCTACTCCACTGAATCTTC-AAGG
1 TCCAATGTAATTTCAAAGAGAAAA--GATTTGTAGCTTCGATCTACTCCGCTAAAACTTCAAAAA
* * *
48846378 AGATAAGAATTGGTAATTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGTATTTT
64 AG-TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTT
* * *
48846443 TATCCTGCTCTACTACAACTTCAGAGAG-AAGGATTGTGGCTTCAATCTGC
128 TATCCTGCTCAACTACAACTTCAGAGAGAAAGGATTGTGGCTTCAATATGA
* ** * **
48846493 TCTAATGTAATTTCAGGGAGAAAAGATTTGTAGCTTCTATCTACTCCGCTGGAACTTCAAAAAAG
1 TCCAATGTAATTTCAAAGAGAAAAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTCAAAAAAG
*
48846558 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGTGTATTTTTAT
66 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTAT
* * *
48846623 CTTGCTCAACTGCAACTTCAGAGAGATAAGGATTGTGGCTTCGATATGA
131 CCTGCTCAACTACAACTTCAGAGAGA-AAGGATTGTGGCTTCAATATGA
* ** *
48846672 TCCAATGTAATTTCAAAGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTCAAGGAGG
1 TCCAATGTAATTTCAAAGAGAAAAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTCAAAAAAG
*
48846737 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATACGGTTTG
66 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTG
48846791 CGACTTGTAG
Statistics
Matches: 259, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
177 123 0.47
178 5 0.02
179 131 0.51
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (178 bp):
TCCAATGTAATTTCAAAGAGAAAAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTCAAAAAAG
TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTAT
CCTGCTCAACTACAACTTCAGAGAGAAAGGATTGTGGCTTCAATATGA
Found at i:48846743 original size:179 final size:177
Alignment explanation
Indices: 48846316--48846790 Score: 671
Period size: 177 Copynumber: 2.7 Consensus size: 177
48846306 TTCGGTCCGC
* * * * * * * *
48846316 TCCAATATAATTTCAAGGAAAAGGGATTTGTAGTTTTGATCTACTCCACTGAATCTTCAAGGAGA
1 TCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGG
* * *
48846381 TAAGAATTGGTAATTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGTATTTTTAT
66 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTAT
* * *
48846446 CCTGCTCTACTACAACTTCAGAGAGAAGGATTGTGGCTTCAATCTGC
131 CCTGCTCAACTACAACTTCAGAGAGAAGGATTGTGGCTTCAATATGA
* * * * * ** *
48846493 TCTAATGTAATTTCAGGGAGAAAAGATTTGTAGCTTCTATCTACTCCGCTGGAACTTCAAAAAAG
1 TCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGG
*
48846558 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGTGTATTTTTAT
66 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTAT
* * *
48846623 CTTGCTCAACTGCAACTTCAGAGAGATAAGGATTGTGGCTTCGATATGA
131 CCTGCTCAACTACAACTTCAGAGAG--AAGGATTGTGGCTTCAATATGA
* *
48846672 TCCAATGTAATTTCAAAGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTCAAGGAGG
1 TCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGG
*
48846737 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATACGGTTTG
66 TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTG
48846791 CGACTTGTAG
Statistics
Matches: 258, Mismatches: 38, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
177 132 0.51
179 126 0.49
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (177 bp):
TCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGG
TAAGAATTGATAATTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTAT
CCTGCTCAACTACAACTTCAGAGAGAAGGATTGTGGCTTCAATATGA
Found at i:48847548 original size:46 final size:46
Alignment explanation
Indices: 48847467--48847706 Score: 281
Period size: 46 Copynumber: 5.2 Consensus size: 46
48847457 AATTTTTAGT
* *
48847467 TTCTTCCATCCATCCCAC-AGCAACTC-AGGGCTATAGGATTTGTATC
1 TTCTTCAATCCATCCCACTA-CAGCTCAAGGG-TATAGGATTTGTATC
* * *
48847513 ATCTTCAATCCATCTCACTACAGCTC-TGGTGTATAGGATTTGTATC
1 TTCTTCAATCCATCCCACTACAGCTCAAGG-GTATAGGATTTGTATC
* * * *
48847559 TTCTTCAATCCATCCCACTGCAGCTCAAAGGTACAGGATTTGTATT
1 TTCTTCAATCCATCCCACTACAGCTCAAGGGTATAGGATTTGTATC
* * *
48847605 TTCTTCAATCCA-CCTAACTGCAGCTCAAGGGTACAGGATTTGTATC
1 TTCTTCAATCCATCC-CACTACAGCTCAAGGGTATAGGATTTGTATC
* **
48847651 TTCTTCAATCCATCCCACTACAGCTCAGGGGTATAGGATTTGTGGC
1 TTCTTCAATCCATCCCACTACAGCTCAAGGGTATAGGATTTGTATC
48847697 TTCTTCAATC
1 TTCTTCAATC
48847707 AATTGGTTTG
Statistics
Matches: 168, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.01
46 161 0.96
47 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (46 bp):
TTCTTCAATCCATCCCACTACAGCTCAAGGGTATAGGATTTGTATC
Found at i:48848191 original size:53 final size:53
Alignment explanation
Indices: 48848107--48848209 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
48848097 AGCATAGCTC
*
48848107 GAAATGAATAAACTAATCAAAGATAGCAAATGCAATAAAAAAGAAATTAACTT
1 GAAATGAATAAACTAATCAAAGATAGAAAATGCAATAAAAAAGAAATTAACTT
** * * *
48848160 GAAATGAATAAGTTAATCAAAGATAGAAAATGTAATAAGAAGGAAATTAA
1 GAAATGAATAAACTAATCAAAGATAGAAAATGCAATAAAAAAGAAATTAA
48848210 TTGGTAGCGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.58, C:0.06, G:0.15, T:0.21
Consensus pattern (53 bp):
GAAATGAATAAACTAATCAAAGATAGAAAATGCAATAAAAAAGAAATTAACTT
Found at i:48854527 original size:11 final size:11
Alignment explanation
Indices: 48854513--48854542 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
48854503 AATATAAAGT
48854513 TAATGATACAA
1 TAATGATACAA
*
48854524 TAATAATACAA
1 TAATGATACAA
48854535 TAATGATA
1 TAATGATA
48854543 AACATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (11 bp):
TAATGATACAA
Found at i:48858659 original size:40 final size:40
Alignment explanation
Indices: 48858613--48858799 Score: 268
Period size: 40 Copynumber: 4.7 Consensus size: 40
48858603 CCAACCCAAT
* * * ** *
48858613 TGCCTTCAGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
48858653 TACCTTCGGGACTTAACCCGGAAATAGA-AACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATA-ACAACCAGCACGAA
*
48858693 TGCCTTTGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
48858733 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
48858773 TGCCTTCGGGACTTAACCTGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
48858800 TCCTCAATTG
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:48860288 original size:15 final size:16
Alignment explanation
Indices: 48860261--48860290 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
48860251 TAACAAGATC
48860261 AATTTCTTTCATCAAT
1 AATTTCTTTCATCAAT
48860277 AATTTC-TTCATCAA
1 AATTTCTTTCATCAA
48860291 AACTTAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTTCTTTCATCAAT
Found at i:48865151 original size:111 final size:111
Alignment explanation
Indices: 48864986--48865207 Score: 300
Period size: 111 Copynumber: 2.0 Consensus size: 111
48864976 TCCGGAACTT
* * ** **
48864986 GAACAACAATAACAATGAGAATGCAGGCCAAAATGAGAACGATGCTGCTCAGAGCATTAGTGACA
1 GAACAACAACAACAATGAGAATGCAGACCAAAATGAGAAAAATGCTGCTCAGAGCATTACCGACA
* *
48865051 ACAAAAATGCAAGTCAGAATGAGAATGATGCTTCTCAGAAATTAAA
66 ACAAAAATGCAAGTCAGAATGAGAATAATGCTTCCCAGAAATTAAA
* * * *
48865097 GAACAACAACAACAATGAGAGTGCAGACCGAAATGAGAAAAATGTTGCTGAGAGCATTACCGACA
1 GAACAACAACAACAATGAGAATGCAGACCAAAATGAGAAAAATGCTGCTCAGAGCATTACCGACA
* * * *
48865162 ACGAGAATGCAGGTCAGAATGAGAATAATGCTTCCCAGAACTTAAA
66 ACAAAAATGCAAGTCAGAATGAGAATAATGCTTCCCAGAAATTAAA
48865208 TAACGATGGA
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
111 95 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (111 bp):
GAACAACAACAACAATGAGAATGCAGACCAAAATGAGAAAAATGCTGCTCAGAGCATTACCGACA
ACAAAAATGCAAGTCAGAATGAGAATAATGCTTCCCAGAAATTAAA
Found at i:48868257 original size:30 final size:29
Alignment explanation
Indices: 48868221--48868287 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
48868211 CTTAACAAAA
* *
48868221 TAAAAATGCTTAATACACTAAATATTATAT
1 TAAAAATGCTTAATACAC-AAACACTATAT
** *
48868251 TAAAAATATTTAATGCACAAACACTATAT
1 TAAAAATGCTTAATACACAAACACTATAT
48868280 TAAAAATG
1 TAAAAATG
48868288 TTCAATTTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (29 bp):
TAAAAATGCTTAATACACAAACACTATAT
Found at i:48877085 original size:40 final size:40
Alignment explanation
Indices: 48877032--48877216 Score: 259
Period size: 40 Copynumber: 4.6 Consensus size: 40
48877022 ACTACTTGCT
*
48877032 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
**
48877072 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
* *
48877112 TAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
*
48877152 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAG-ACACT-AGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA-ACTCA-CA
*
48877192 CAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
48877217 TTATCATCCG
Statistics
Matches: 133, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.02
40 131 0.98
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
Found at i:48877132 original size:80 final size:80
Alignment explanation
Indices: 48877031--48877220 Score: 287
Period size: 80 Copynumber: 2.4 Consensus size: 80
48877021 AACTACTTGC
48877031 TCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
1 TCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
*
48877096 G-ATATAGTA-ACTCGGA
66 GAAT-TAG-ACACT-AGA
* *
48877112 T-AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 TCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
*
48877176 GAATTAGACACTAGC
66 GAATTAGACACTAGA
*
48877191 TCAAATGCCTTCGGGACTTAACCCGGTTAT
1 TCAAATGCCTTCGGGACTTAGCCCGGTTAT
48877221 CATCCGAATA
Statistics
Matches: 100, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
79 3 0.03
80 94 0.94
81 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
TCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
GAATTAGACACTAGA
Found at i:48882151 original size:53 final size:53
Alignment explanation
Indices: 48881969--48882175 Score: 193
Period size: 53 Copynumber: 3.8 Consensus size: 53
48881959 ATTAGGGTTT
* * * *
48881969 AAGGATACCAAGTAAGACCATGCCAAGGCATGG-AATTGGTAAGCTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * * * * * * *
48882023 AAGGAAATCATGTAAGACCA-CCTCAAGACATGGCATTGATAAACTACGATAAGGT
1 AAGGATACCATGTAAGACCATGC-CAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
48882078 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
48882131 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
48882176 TAAAAAGAAA
Statistics
Matches: 118, Mismatches: 30, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
53 46 0.39
54 33 0.28
55 38 0.32
56 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:48889184 original size:20 final size:22
Alignment explanation
Indices: 48889149--48889188 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
48889139 AATAATTATC
48889149 ATTTCTATGTATTTCAAGTTTT
1 ATTTCTATGTATTTCAAGTTTT
48889171 ATTTCT-TG-ATTTCAAGTT
1 ATTTCTATGTATTTCAAGTT
48889189 CTTACCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 2 0.11
22 6 0.33
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (22 bp):
ATTTCTATGTATTTCAAGTTTT
Found at i:48889420 original size:67 final size:67
Alignment explanation
Indices: 48889311--48889443 Score: 203
Period size: 67 Copynumber: 2.0 Consensus size: 67
48889301 TTTCCATTTC
**
48889311 AGAGAGCACACTCCCACGAACCTCAATTCTTACAGTAAGATTACCAGTCCAAGCTAAATCCCCTG
1 AGAGAGCACACTCCCACGAACCTCAATTCTTACAACAAGATTACCAGTCCAAGCTAAATCCCCTG
48889376 TG
66 TG
* * * * *
48889378 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAACAGGATTACCAGTCCAGGCTAAATGCCCTG
1 AGAGAGCACACTCCCACGAACCTCAATTCTTACAACAAGATTACCAGTCCAAGCTAAATCCCCTG
48889443 T
66 T
48889444 AACATATGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.21
Consensus pattern (67 bp):
AGAGAGCACACTCCCACGAACCTCAATTCTTACAACAAGATTACCAGTCCAAGCTAAATCCCCTG
TG
Found at i:48889541 original size:58 final size:54
Alignment explanation
Indices: 48889415--48889550 Score: 157
Period size: 58 Copynumber: 2.4 Consensus size: 54
48889405 TCTTACAACA
* * *
48889415 GGATTACCAGTCCAGGCTAAATGCCCTGTAACATATGCTCAAAAAGTATTGTCG
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAACAAATACTCAAAAAGTATTGTCG
* * * *
48889469 GGATTACCAATCCAGGCTAAATCCCCTGCAATGACAAATACTCTATAAAGCT-TTGTCT
1 GGATTACCAGTCCAGGCTAAATCCCCTG---TAACAAATACTC-AAAAAG-TATTGTCG
48889527 GGATTACCAGTCCAGGCTAAATCC
1 GGATTACCAGTCCAGGCTAAATCC
48889551 AAACTCACAC
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
54 26 0.38
57 9 0.13
58 33 0.48
59 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (54 bp):
GGATTACCAGTCCAGGCTAAATCCCCTGTAACAAATACTCAAAAAGTATTGTCG
Found at i:48893108 original size:53 final size:53
Alignment explanation
Indices: 48893028--48893132 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
48893018 ATAAACTACG
* * * * *
48893028 ATAAGGCAAATATCCCATGTAAGACCATGCCAAGGCATGGCAATAGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATAGTAAGTTC
* *
48893081 ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCAATAGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATAGTAAGTT
48893133 TAAAAAGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATAGTAAGTTC
Found at i:48894981 original size:47 final size:48
Alignment explanation
Indices: 48894876--48894999 Score: 139
Period size: 47 Copynumber: 2.6 Consensus size: 48
48894866 GGGTAAGGCA
***
48894876 CCGATGCCATGTCCCAAACATAGTCTTACACTGGTTTATGTCTCGAGG
1 CCGATGCCATGTCCCAAACATAGTCTTACACTGCACTATGTCTCGAGG
* *
48894924 CCGATG-CATGTCCTAAACAT-GTCTTACACTAGCACT-TGTCAT-GATG
1 CCGATGCCATGTCCCAAACATAGTCTTACACT-GCACTATGTC-TCGAGG
* *
48894970 CCGATGCCATGTCCCATACATGGTCTTACA
1 CCGATGCCATGTCCCAAACATAGTCTTACA
48895000 TTGGCTCTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
46 23 0.35
47 28 0.43
48 14 0.22
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATAGTCTTACACTGCACTATGTCTCGAGG
Found at i:48902684 original size:40 final size:40
Alignment explanation
Indices: 48902637--48902840 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
48902627 CGGGCTTTAA
** *
48902637 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
48902677 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48902717 CCGGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
48902757 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48902797 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
48902837 CCGG
1 CCGG
48902841 TTATCATCCG
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48907396 original size:33 final size:33
Alignment explanation
Indices: 48907359--48907424 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
48907349 TTCTAAGAAA
48907359 AAGTTTTAAGATAAAAGCATTATTAAATAAGAT
1 AAGTTTTAAGATAAAAGCATTATTAAATAAGAT
48907392 AAGTTTTAAGATAAAAGCATTATTAAATAAGAT
1 AAGTTTTAAGATAAAAGCATTATTAAATAAGAT
48907425 GTTTTTGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (33 bp):
AAGTTTTAAGATAAAAGCATTATTAAATAAGAT
Found at i:48908710 original size:7 final size:8
Alignment explanation
Indices: 48908695--48908741 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
48908685 AATAATGTCA
48908695 ATAATTTT
1 ATAATTTT
48908703 AT-ATTTT
1 ATAATTTT
48908710 AT-ATTTT
1 ATAATTTT
*
48908717 TTAATTTT
1 ATAATTTT
48908725 AGTAATTTT
1 A-TAATTTT
48908734 ATAATTTT
1 ATAATTTT
48908742 TTTATACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 13 0.37
8 14 0.40
9 8 0.23
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (8 bp):
ATAATTTT
Found at i:48916900 original size:12 final size:11
Alignment explanation
Indices: 48916885--48916942 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
48916875 TATAGTAATT
48916885 TTTAAGTTTAAA
1 TTTAA-TTTAAA
48916897 TTTAATTATAAA
1 TTTAATT-TAAA
* *
48916909 ATAAATTTAAA
1 TTTAATTTAAA
* *
48916920 TTTTATTCAAA
1 TTTAATTTAAA
*
48916931 CTTAATTTAAA
1 TTTAATTTAAA
48916942 T
1 T
48916943 ATAAAAATAT
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
11 21 0.60
12 14 0.40
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (11 bp):
TTTAATTTAAA
Found at i:48917294 original size:124 final size:124
Alignment explanation
Indices: 48917074--48917322 Score: 498
Period size: 124 Copynumber: 2.0 Consensus size: 124
48917064 CATTTGACTG
48917074 ATGTAGCTAAAGCACTAGATCATCCCTCAGTTAACATGGATGAAGTTCCAAAACACAACCAACAA
1 ATGTAGCTAAAGCACTAGATCATCCCTCAGTTAACATGGATGAAGTTCCAAAACACAACCAACAA
48917139 TAAACACTGTTAACATGGATGAAGTTCAAAAATTCAGGATTGAATCAATAAAAAAATTA
66 TAAACACTGTTAACATGGATGAAGTTCAAAAATTCAGGATTGAATCAATAAAAAAATTA
48917198 ATGTAGCTAAAGCACTAGATCATCCCTCAGTTAACATGGATGAAGTTCCAAAACACAACCAACAA
1 ATGTAGCTAAAGCACTAGATCATCCCTCAGTTAACATGGATGAAGTTCCAAAACACAACCAACAA
48917263 TAAACACTGTTAACATGGATGAAGTTCAAAAATTCAGGATTGAATCAATAAAAAAATTA
66 TAAACACTGTTAACATGGATGAAGTTCAAAAATTCAGGATTGAATCAATAAAAAAATTA
48917322 A
1 A
48917323 CTTAAAAAAT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 125 1.00
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (124 bp):
ATGTAGCTAAAGCACTAGATCATCCCTCAGTTAACATGGATGAAGTTCCAAAACACAACCAACAA
TAAACACTGTTAACATGGATGAAGTTCAAAAATTCAGGATTGAATCAATAAAAAAATTA
Found at i:48917492 original size:24 final size:25
Alignment explanation
Indices: 48917455--48917522 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 25
48917445 TAGTGATTGG
*
48917455 TTAAGTATAAATATATTATT-ATATT
1 TTAA-TATATATATATTATTAATATT
*
48917480 TTAATATATATATATAATTAATATT
1 TTAATATATATATATTATTAATATT
*
48917505 TTTATAATATAATATATT
1 TTAAT-ATAT-ATATATT
48917523 CAGGTCGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 13 0.36
25 13 0.36
26 4 0.11
27 6 0.17
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (25 bp):
TTAATATATATATATTATTAATATT
Found at i:48917502 original size:17 final size:16
Alignment explanation
Indices: 48917464--48917522 Score: 57
Period size: 18 Copynumber: 3.5 Consensus size: 16
48917454 GTTAAGTATA
*
48917464 AATATATTATTATATTTT
1 AATATATTA-TATA-ATT
48917482 AATATATATATATAATT
1 AATATAT-TATATAATT
*
48917499 AATAT-TTTTATAATAT
1 AATATATTATATAAT-T
48917515 AATATATT
1 AATATATT
48917523 CAGGTCGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
17 9 0.25
18 11 0.31
19 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AATATATTATATAATT
Found at i:48919485 original size:25 final size:26
Alignment explanation
Indices: 48919438--48919486 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
48919428 AGTATCTTAT
*
48919438 TTTTTTTTATTTTATGTTGTTTAAAG
1 TTTTTTTTAATTTATGTTGTTTAAAG
48919464 TTTTTTTTAATTTATGTT-TTTAA
1 TTTTTTTTAATTTATGTTGTTTAA
48919487 TTAATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.71
Consensus pattern (26 bp):
TTTTTTTTAATTTATGTTGTTTAAAG
Found at i:48923823 original size:13 final size:13
Alignment explanation
Indices: 48923807--48923834 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
48923797 ACCCAAGTCA
48923807 GTGAGTTACACTG
1 GTGAGTTACACTG
48923820 GTGAGTTACACTG
1 GTGAGTTACACTG
48923833 GT
1 GT
48923835 ACAGACATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.32
Consensus pattern (13 bp):
GTGAGTTACACTG
Found at i:48926243 original size:24 final size:25
Alignment explanation
Indices: 48926185--48926244 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
48926175 ATAGTTAAGC
*
48926185 ATTATGAATGTTTCATAAATTATAT
1 ATTATGAATGTTTCATAAATTACAT
*
48926210 TTTATGAATGTTTCATAAA-TACAT
1 ATTATGAATGTTTCATAAATTACAT
48926234 ATTATGAATGT
1 ATTATGAATGT
48926245 GATTTACAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (25 bp):
ATTATGAATGTTTCATAAATTACAT
Found at i:48926531 original size:23 final size:23
Alignment explanation
Indices: 48926488--48926531 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
48926478 ATAAAGTAGA
**
48926488 AGACATATTCAAACTTGAAAGCT
1 AGACATATTCAAACTCAAAAGCT
*
48926511 AGACTTATTCAAACTCAAAAG
1 AGACATATTCAAACTCAAAAG
48926532 TTTATTTTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.25
Consensus pattern (23 bp):
AGACATATTCAAACTCAAAAGCT
Found at i:48928246 original size:7 final size:7
Alignment explanation
Indices: 48928234--48928259 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
48928224 TATTATAAAC
48928234 AAATAAT
1 AAATAAT
48928241 AAATAAT
1 AAATAAT
48928248 AAATAAT
1 AAATAAT
48928255 AAATA
1 AAATA
48928260 GAAAAATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATAAT
Found at i:48929200 original size:30 final size:31
Alignment explanation
Indices: 48929140--48929212 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
48929130 CTAAGTTTCA
*
48929140 AAATTTCGGTGGTAAAAATAAAAAATTAACC
1 AAATTTTGGTGGTAAAAATAAAAAATTAACC
48929171 AAATTTTGGTGGTAAAAATAAAAAA-TAACC
1 AAATTTTGGTGGTAAAAATAAAAAATTAACC
**
48929201 AAGGTTTGGTGG
1 AAATTTTGGTGG
48929213 CATCGATTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 15 0.38
31 24 0.62
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.27
Consensus pattern (31 bp):
AAATTTTGGTGGTAAAAATAAAAAATTAACC
Found at i:48931665 original size:23 final size:23
Alignment explanation
Indices: 48931632--48931680 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
48931622 CTTGATGAGA
*
48931632 TGATATACCTCATCCTGACGTGG
1 TGATATACCTCATCCTGACATGG
* *
48931655 TGATATGCCTCGTCCTGACATGG
1 TGATATACCTCATCCTGACATGG
48931678 TGA
1 TGA
48931681 CATGTATTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (23 bp):
TGATATACCTCATCCTGACATGG
Found at i:48935365 original size:48 final size:48
Alignment explanation
Indices: 48935301--48935567 Score: 261
Period size: 48 Copynumber: 5.6 Consensus size: 48
48935291 AAATTTGGGT
* * *
48935301 GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * **
48935349 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGTGA-
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * **
48935396 TATTGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGACATCGATCAC
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
*
48935445 -ATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C
* ** * * * *
48935493 GAGATGAGAGTTAGTGTGAGACCATGTTTGGGACATGGCATTGGCCTC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * *
48935541 GACATGTGGGCCAGTGTAAGACCATGT
1 GATATGAGAGCCAGTGTAAGACCATGT
48935568 TTAGTATTCC
Statistics
Matches: 178, Mismatches: 36, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
47 3 0.02
48 173 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:48939261 original size:19 final size:19
Alignment explanation
Indices: 48939237--48939282 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
48939227 ATTTAGTACG
48939237 AGCTTACTAAGCTTATGAA
1 AGCTTACTAAGCTTATGAA
48939256 AGCTTACTAAGCTTATGAA
1 AGCTTACTAAGCTTATGAA
48939275 AGCTTACT
1 AGCTTACT
48939283 TTGTGTCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (19 bp):
AGCTTACTAAGCTTATGAA
Found at i:48942103 original size:120 final size:120
Alignment explanation
Indices: 48941884--48942173 Score: 356
Period size: 120 Copynumber: 2.4 Consensus size: 120
48941874 CTAACGGGGT
* * * * *
48941884 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGACCCGAAGGCATTTGTGCAAGTGATTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCAA
* * * *
48941948 GTTACTAATTCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACAA-ATTCTGGGC
65 GTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAATA-TCCGGAC
* *
48942004 TAAGCCCCGAAGGCATTTGTGCAAGTTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG
1 TAAGACCCGAAGGCATTTGTGCAAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG
* * *
48942069 TTA-TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGAC
66 TTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAATATCCGGAC
* * * *
48942124 TAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 TAAGACCCGAAGGCATTTGTGCAAGTGATTATATCCGGGCTAAGTCCCGAAG
48942174 ATACTTGGGT
Statistics
Matches: 148, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
118 14 0.09
119 20 0.14
120 112 0.76
121 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (120 bp):
TAAGACCCGAAGGCATTTGTGCAAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG
TTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAATATCCGGAC
Found at i:48942118 original size:40 final size:40
Alignment explanation
Indices: 48941884--48942173 Score: 320
Period size: 40 Copynumber: 7.3 Consensus size: 40
48941874 CTAACGGGGT
* * * *
48941884 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-TCCGGGC
*
48941924 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-TCCGGGC
* * * *
48941964 TAAGTCCCGAAGGCTTTTGTGCGAGTTA-CAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-TCCGGGC
* *
48942004 TAAGCCCCGAAGGCATTTGTGCAAGTTATTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGC
*
48942044 TAAGTCCCGAAGGCATTTGTGCAAGTTATTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGC
* * ** *
48942084 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGC
* * **
48942124 TAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGC
*
48942162 TAAATCCCGAAG
1 TAAGTCCCGAAG
48942174 ATACTTGGGT
Statistics
Matches: 219, Mismatches: 29, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
38 12 0.05
39 17 0.08
40 188 0.86
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGC
Found at i:48950196 original size:40 final size:41
Alignment explanation
Indices: 48950139--48950392 Score: 295
Period size: 40 Copynumber: 6.3 Consensus size: 41
48950129 CTAACGGGGT
* * * *
48950139 TAAGTCTCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* *
48950179 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* * **
48950219 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* *
48950259 TAAGCCCCAAAGGCATTTGTGCAAGTTATT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
48950299 TAAGTCCCGAAGGCATTTGTGCAAGTTATT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
* * * ** *
48950339 TAAGTCCTGAAGGCATTTGTGCTAGTGA-CCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
*
48950379 TAAGACCCGAAGGC
1 TAAGTCCCGAAGGC
48950393 CTTGTGCGAG
Statistics
Matches: 190, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 188 0.99
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTTATTAATATCCGGGC
Found at i:48950376 original size:120 final size:120
Alignment explanation
Indices: 48950152--48950428 Score: 339
Period size: 120 Copynumber: 2.3 Consensus size: 120
48950142 GTCTCGAAGA
* *
48950152 CATTTGTGCTAGTGATTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 CATTTGTGCAAGTGATTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCCG
* * * *
48950216 GGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCCGGGCTAAGCCCCAAAGG
65 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGACTAAGACCCAAAGG
* *
48950272 CATTTGTGCAAGTTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-TTATATCCG
1 CATTTGTGCAAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT-TCCG
* * * *
48950336 GGCTAAGTCCTGAAGGCATTTGTGCTAGTGAC-CATATCCGGACTAAGACCCGAAGG
65 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAAT-TCCGGACTAAGACCCAAAGG
* * * * *
48950392 C-CTTGTGCGAGTGGTTATATCC-GGATAAATCCCGAAG
1 CATTTGTGCAAGTGATTATATCCGGGCTAAGTCCCGAAG
48950429 ATACTTGGGT
Statistics
Matches: 136, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
118 13 0.10
119 22 0.16
120 100 0.74
121 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (120 bp):
CATTTGTGCAAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCCGG
GCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGACTAAGACCCAAAGG
Found at i:48960039 original size:55 final size:55
Alignment explanation
Indices: 48959913--48960039 Score: 166
Period size: 55 Copynumber: 2.3 Consensus size: 55
48959903 CGTGTCAATC
* * *
48959913 TAACAAGTTCGACCACGGGTGCTAGACACGGGCGTGTCTCACGCTCATGCTGTTT
1 TAACAGGTTCGACCACGGGTGCTACACACGGGCGTGTCTCACCCTCATGCTGTTT
* * *
48959968 TAACAGGTTC-ACCCACGGTTGCTCCACACGGGCGTGTCTCACCCTCATGTTGTTT
1 TAACAGGTTCGA-CCACGGGTGCTACACACGGGCGTGTCTCACCCTCATGCTGTTT
**
48960023 TGGCAGGTTCGACCACG
1 TAACAGGTTCGACCACG
48960040 ACTATGTCGC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
54 1 0.02
55 60 0.97
56 1 0.02
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.26
Consensus pattern (55 bp):
TAACAGGTTCGACCACGGGTGCTACACACGGGCGTGTCTCACCCTCATGCTGTTT
Found at i:48975071 original size:29 final size:29
Alignment explanation
Indices: 48975011--48975115 Score: 151
Period size: 29 Copynumber: 3.7 Consensus size: 29
48975001 CTGACTGATT
* * *
48975011 TCGCACACATAGTG-CTCGATTA-AAGAAC
1 TCGCACACATAGTGCCTCAATTACCA-ATC
48975039 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACCAATC
48975068 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACCAATC
*
48975097 TCGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
48975116 TAATTCTGGC
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
28 14 0.20
29 56 0.79
30 1 0.01
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACCAATC
Found at i:48975187 original size:40 final size:40
Alignment explanation
Indices: 48975124--48975316 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
48975114 CATAATTCTG
* * *
48975124 GCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACTA
1 GCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACACCA
*
48975163 GCACGAATGCTCTTCGGGACTTAGCCCAGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
* * * *
48975203 ACACGAATGCTCTTCGGGACTTAACACAGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
48975243 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
48975283 GCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATA
48975317 TAACTCTCAA
Statistics
Matches: 141, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 129 0.91
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
Found at i:48986913 original size:48 final size:47
Alignment explanation
Indices: 48986750--48986939 Score: 191
Period size: 48 Copynumber: 4.0 Consensus size: 47
48986740 GACATTTGGG
* * * *
48986750 TGATATGTGTGCCAGTGTAAGACCACGTCTGGGACATGGCATCGACCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCA
* * * *
48986798 TCATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-A
* * *
48986846 TGTTGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * * *
48986893 TTGATATGTGCGCTACTGTAAGACCAAGTCTGAGACATGGTATCGGC
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
48986940 GTAGACGTTA
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
47 2 0.02
48 115 0.98
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:48995189 original size:25 final size:24
Alignment explanation
Indices: 48995155--48995229 Score: 105
Period size: 25 Copynumber: 3.0 Consensus size: 24
48995145 TTAAGGTTGC
48995155 CAATTTATAGCTCGTGAGAGCATA
1 CAATTTATAGCTCGTGAGAGCATA
*
48995179 TCAATTTATAGCTCATGAGAGCATA
1 -CAATTTATAGCTCGTGAGAGCATA
* *
48995204 CTGATTTATAGCTTGTGAGAGCATA
1 C-AATTTATAGCTCGTGAGAGCATA
48995229 C
1 C
48995230 CAATCTTCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 1 0.02
25 44 0.98
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (24 bp):
CAATTTATAGCTCGTGAGAGCATA
Found at i:48995546 original size:17 final size:17
Alignment explanation
Indices: 48995524--48995557 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48995514 CTCATCCATG
*
48995524 ATTATTGGTTTATATAT
1 ATTATTGGTTCATATAT
*
48995541 ATTATTTGTTCATATAT
1 ATTATTGGTTCATATAT
48995558 GTATTTACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59
Consensus pattern (17 bp):
ATTATTGGTTCATATAT
Found at i:48998318 original size:90 final size:90
Alignment explanation
Indices: 48998146--48998321 Score: 217
Period size: 90 Copynumber: 2.0 Consensus size: 90
48998136 ATTTTTACAA
* * *
48998146 AACTTAAAATTTTTTTGCTATAAACAAGGGCCACACACCCAGGACATACACCCATGCCTGAGGCC
1 AACTTAAAACTTTTTTGCTATAAACAAGGGCAACACACCCAGGACACACACCCATGCCTGAGGCC
** *
48998211 GTGTCCCTTGCATGGCTGAGAATAG
66 GTGTCCCTCACACGGCTGAGAATAG
* * * * ** ** *
48998236 AACTTAAAACTTTTTTGCTATAGACAGGGGTAACACGCCTGGGACACATGCCCGTGCCTGAGGCC
1 AACTTAAAACTTTTTTGCTATAAACAAGGGCAACACACCCAGGACACACACCCATGCCTGAGGCC
48998301 GTGTCCCTCACACGGCTGAGA
66 GTGTCCCTCACACGGCTGAGA
48998322 CACATGCCCA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 71 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (90 bp):
AACTTAAAACTTTTTTGCTATAAACAAGGGCAACACACCCAGGACACACACCCATGCCTGAGGCC
GTGTCCCTCACACGGCTGAGAATAG
Found at i:49002542 original size:25 final size:26
Alignment explanation
Indices: 49002509--49002558 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
49002499 AATTCATTCA
*
49002509 TAAATTAAAGC-ATTTAAAATACATT
1 TAAAGTAAAGCTATTTAAAATACATT
*
49002534 TAAAGTAAAGCTTATTTAACATACA
1 TAAAGTAAAGC-TATTTAAAATACA
49002559 AAGTTACCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (26 bp):
TAAAGTAAAGCTATTTAAAATACATT
Found at i:49038219 original size:39 final size:39
Alignment explanation
Indices: 49038165--49038269 Score: 140
Period size: 39 Copynumber: 2.7 Consensus size: 39
49038155 TTCAGTGATG
* * *
49038165 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAA
49038204 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAA
* * *
49038243 TATGTCCGGGC-TAAAGTCCCACAGGCT
1 TATATCCGGACTTAAGGT-CCACAGGCT
49038270 TCTAGCTGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 5 0.08
39 54 0.92
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAA
Found at i:49053414 original size:28 final size:28
Alignment explanation
Indices: 49053371--49053457 Score: 122
Period size: 28 Copynumber: 3.1 Consensus size: 28
49053361 CACATACCTG
* *
49053371 TATATGGCCCACTAGGCCCAATCTC-TT
1 TATATGGCCCATTAGGCCCAATCACATT
49053398 TCATATGGCCCATTAGGCCCAATCACATT
1 T-ATATGGCCCATTAGGCCCAATCACATT
*
49053427 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCC-AATCACATT
49053456 TA
1 TA
49053458 CAGTCATGCT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
27 1 0.02
28 39 0.72
29 14 0.26
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:49053697 original size:16 final size:16
Alignment explanation
Indices: 49053676--49053728 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
49053666 AAAACTTTCA
*
49053676 CTTTTTGACATTTTGG
1 CTTTTTGACATTTCGG
*
49053692 CTTTTTGGCATTTCGG
1 CTTTTTGACATTTCGG
** *
49053708 CTTTCCGGCATTTCGG
1 CTTTTTGACATTTCGG
49053724 CTTTT
1 CTTTT
49053729 AGCGATCTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.08, C:0.21, G:0.21, T:0.51
Consensus pattern (16 bp):
CTTTTTGACATTTCGG
Found at i:49054906 original size:16 final size:16
Alignment explanation
Indices: 49054885--49054916 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49054875 AAAATTGAGA
49054885 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
49054901 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
49054917 GTGTTACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:49055333 original size:21 final size:22
Alignment explanation
Indices: 49055294--49055335 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
49055284 GATGTGTAGG
*
49055294 ATGTTTTAAATAAATATGCATAA
1 ATGTTTT-AATAAAAATGCATAA
49055317 ATGTTTT-ATAAAAATGCAT
1 ATGTTTTAATAAAAATGCAT
49055336 TTCCATGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
23 7 0.39
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (22 bp):
ATGTTTTAATAAAAATGCATAA
Found at i:49058413 original size:39 final size:39
Alignment explanation
Indices: 49058370--49058490 Score: 127
Period size: 39 Copynumber: 3.1 Consensus size: 39
49058360 TCTAACCATC
* *
49058370 TAACATACAAGCATATATCACAGTACTCAAATAATCACA
1 TAACATTCAAGCATATATCACAATACTCAAATAATCACA
* * * ** *
49058409 TAACATTTAAGCATAAATCTCAATACTCGTATAATCACG
1 TAACATTCAAGCATATATCACAATACTCAAATAATCACA
* **
49058448 TAACATTCAAACATATATCACAATAC-CAGTTTAATCACA
1 TAACATTCAAGCATATATCACAATACTCA-AATAATCACA
49058487 TAAC
1 TAAC
49058491 TTAAGATAAT
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
38 1 0.02
39 65 0.98
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.27
Consensus pattern (39 bp):
TAACATTCAAGCATATATCACAATACTCAAATAATCACA
Found at i:49060288 original size:46 final size:46
Alignment explanation
Indices: 49060218--49060387 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
49060208 TGTAACCCGC
* *
49060218 CCATAAGTGAACTCGGACTGAACTCAACGAGCTCGGGCGTTCTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCAT
* * *
49060264 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATG-CCT-AGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCA--T
* *** * * *
49060310 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCCCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCAT
49060357 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
49060388 TTCAGATGCC
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 63 0.63
47 32 0.32
48 1 0.01
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCAT
Found at i:49060396 original size:93 final size:93
Alignment explanation
Indices: 49060226--49060397 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
49060216 GCCCATAAGT
* * * *
49060226 GAACTCGGACTGAACTCAACGAGCTCGGGCGTTCTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
*
49060291 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCAGATGCCTAGTTACATCTCTC
*
49060319 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
* *
49060384 CGAGTTCAGATGCC
66 CAAGCTCAGATGCC
49060398 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCAGATGCCTAGTTACATCTCTC
Found at i:49062823 original size:30 final size:30
Alignment explanation
Indices: 49062779--49062867 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
49062769 CAAAGATAAT
49062779 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
49062808 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
49062838 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
49062868 CGATATTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:49062827 original size:15 final size:15
Alignment explanation
Indices: 49062779--49062858 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
49062769 CAAAGATAAT
*
49062779 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49062793 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
49062808 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
49062823 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
49062838 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
49062853 AAGAAA
1 AAGAAA
49062859 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49062867 original size:15 final size:15
Alignment explanation
Indices: 49062790--49062867 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
49062780 AGAAAACCGA
49062790 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
49062805 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
49062819 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
49062834 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
49062850 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49062865 ATA
1 ATA
49062868 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49070469 original size:326 final size:326
Alignment explanation
Indices: 49069876--49070524 Score: 1181
Period size: 326 Copynumber: 2.0 Consensus size: 326
49069866 AAGCTACTAG
*
49069876 TATATATGCAGCTCTAAGCCTTCAGTAGCGGTATTATAATTGACACAAAGCTATCAGTAACTATA
1 TATATATGCAGCTCTAAGCCTTCAGTAGCGGTATTATAATTGACACAAAGCCATCAGTAACTATA
* * * *
49069941 TTATGTTTGGCACATAACCATTAGCGACGGTAATTTAATCGAAAACAGCCTTGGGTAAATATGAT
66 TTATGTTTGGCACATAACCATCAACGACGGTAATATAATCAAAAACAGCCTTGGGTAAATATGAT
49070006 CAACATAGAGTCATCAATAAGTATGTTAGGCACATAGCCACGGGTAAATACGTTTGGCACAAGGC
131 CAACATAGAGTCATCAATAAGTATGTTAGGCACATAGCCACGGGTAAATACGTTTGGCACAAGGC
*
49070071 CATAGTCAAGATGGCATAGAGCCATTTTTAGGTTGGCACAGAGCCATAATCAGATTAAGCGGCAC
196 CATAGTCAAGATGGCACAGAGCCATTTTTAGGTTGGCACAGAGCCATAATCAGATTAAGCGGCAC
*
49070136 TAAGCCGTCCATCAGTCCACAGTTGTCTCGTGCGACCCGTGCGACCTTAACAGACCAATACTGTT
261 TAAGCCGTCCATCAGTCCACAGTTGTCTCATGCGACCCGTGCGACCTTAACAGACCAATACTGTT
49070201 T
326 T
49070202 TATATATGCAGCTCTAAGCCTTCAGTAGCGGTATTATAATTGACACAAAGCCATCAGTAACTATA
1 TATATATGCAGCTCTAAGCCTTCAGTAGCGGTATTATAATTGACACAAAGCCATCAGTAACTATA
* **
49070267 TTATGTTTGGCACATAACTATCAACGACGGTAATATAATCAAAAATGGCCTTGGGTAAATATGAT
66 TTATGTTTGGCACATAACCATCAACGACGGTAATATAATCAAAAACAGCCTTGGGTAAATATGAT
*
49070332 CAACGTAGAGTCATCAATAAGTATGTTAGGCACATAGCCACGGGTAAATACGTTTGGCACAAGGC
131 CAACATAGAGTCATCAATAAGTATGTTAGGCACATAGCCACGGGTAAATACGTTTGGCACAAGGC
*
49070397 CGTAGTCAAGATGGCACAGAGCCATTTTTAGGTTGGCACAGAGCCATAATCAGATTAAGCGGCAC
196 CATAGTCAAGATGGCACAGAGCCATTTTTAGGTTGGCACAGAGCCATAATCAGATTAAGCGGCAC
*
49070462 TAAGCCGTCCATCGGTCCACAGTTGTCTCATGCGACCCGTGCGACCTTAACAGACCAATACTG
261 TAAGCCGTCCATCAGTCCACAGTTGTCTCATGCGACCCGTGCGACCTTAACAGACCAATACTG
49070525 GATCCACAAT
Statistics
Matches: 310, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
326 310 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (326 bp):
TATATATGCAGCTCTAAGCCTTCAGTAGCGGTATTATAATTGACACAAAGCCATCAGTAACTATA
TTATGTTTGGCACATAACCATCAACGACGGTAATATAATCAAAAACAGCCTTGGGTAAATATGAT
CAACATAGAGTCATCAATAAGTATGTTAGGCACATAGCCACGGGTAAATACGTTTGGCACAAGGC
CATAGTCAAGATGGCACAGAGCCATTTTTAGGTTGGCACAGAGCCATAATCAGATTAAGCGGCAC
TAAGCCGTCCATCAGTCCACAGTTGTCTCATGCGACCCGTGCGACCTTAACAGACCAATACTGTT
T
Found at i:49071522 original size:27 final size:27
Alignment explanation
Indices: 49071489--49071687 Score: 245
Period size: 27 Copynumber: 7.4 Consensus size: 27
49071479 GGATAAGTTT
* *
49071489 TAGAATTACCGAAATACCCTTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
49071516 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
**
49071543 TAGAATTATTGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
49071570 TAGAATTACCGAAATACCCCTGTACGA
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
49071597 TAAAATTATCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* **
49071624 TAGAAATAATGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * * *
49071651 TAAAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
49071678 TAAAATTACC
1 TAGAATTACC
49071688 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:49071624 original size:81 final size:81
Alignment explanation
Indices: 49071489--49071687 Score: 272
Period size: 81 Copynumber: 2.5 Consensus size: 81
49071479 GGATAAGTTT
* * * * *
49071489 TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTG
1 TAGAATTACCGAAATACCCCTGTAAGATAAAATTACCGAAATACCCCTGTAGGGTAGAAATAATG
49071554 AAATACCCCTGTAGGG
66 AAATACCCCTGTAGGG
* * *
49071570 TAGAATTACCGAAATACCCCTGTACGATAAAATTATCGAAATACCCTTGTAGGGTAGAAATAATG
1 TAGAATTACCGAAATACCCCTGTAAGATAAAATTACCGAAATACCCCTGTAGGGTAGAAATAATG
49071635 AAATACCCCTGTAGGG
66 AAATACCCCTGTAGGG
* * * ** *
49071651 TAAAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 TAGAATTACCGAAATACCCCTGTAAGATAAAATTACC
49071688 ATTTTGCCCC
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCCTGTAAGATAAAATTACCGAAATACCCCTGTAGGGTAGAAATAATG
AAATACCCCTGTAGGG
Found at i:49072454 original size:33 final size:32
Alignment explanation
Indices: 49072405--49072468 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
49072395 CTCGCTGCAA
* *
49072405 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
49072438 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
49072469 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:49073390 original size:27 final size:27
Alignment explanation
Indices: 49073351--49073548 Score: 125
Period size: 27 Copynumber: 7.3 Consensus size: 27
49073341 CAAAATAGTC
** * *
49073351 ATTTTACCCTACAGGGGTATTTCAATA
1 ATTTTACAATACAAGGGTATTTCAGTA
* *
49073378 CTTTTACAATACAAGGTTATTTCAGTA
1 ATTTTACAATACAAGGGTATTTCAGTA
* * *
49073405 ATTCTACAA-ACTGAGGGTATTTTAGTA
1 ATTTTACAATAC-AAGGGTATTTCAGTA
49073432 ATTTTACAAGT-CAAGGGTATTTCAGTA
1 ATTTTACAA-TACAAGGGTATTTCAGTA
* * * *
49073459 ATTTCACAA-ATCGAGGGCATTTCGGTA
1 ATTTTACAATA-CAAGGGTATTTCAGTA
* * ** * *
49073486 ATTTCAAAATTTAGGGGTATTT-TGATA
1 ATTTTACAATACAAGGGTATTTCAG-TA
** * *
49073513 ATTTTACAACCCGAGGGTATTTGAGTA
1 ATTTTACAATACAAGGGTATTTCAGTA
49073540 ATTTTACAA
1 ATTTTACAA
49073549 ATCGAGGGTC
Statistics
Matches: 130, Mismatches: 33, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
26 3 0.02
27 125 0.96
28 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTTTACAATACAAGGGTATTTCAGTA
Found at i:49073468 original size:54 final size:53
Alignment explanation
Indices: 49073365--49073557 Score: 158
Period size: 54 Copynumber: 3.6 Consensus size: 53
49073355 TACCCTACAG
* * *
49073365 GGGTATTTCAATACTTTTACAATACAAGGTTATTTCAGTAA-TTCTACAAACTGA
1 GGGTATTTCAGTAATTTTACAAT-CAAGGGTATTTCAGTAATTTC-ACAAACTGA
*
49073419 GGGTATTTTAGTAATTTTACAAGTCAAGGGTATTTCAGTAATTTCACAAA-TCGA
1 GGGTATTTCAGTAATTTTACAA-TCAAGGGTATTTCAGTAATTTCACAAACT-GA
* * * * * * * * * *
49073473 GGGCATTTCGGTAATTTCAAAATTTAGGGGTATTT-TGATAATTTTACAACCCGA
1 GGGTATTTCAGTAATTTTACAA-TCAAGGGTATTTCAG-TAATTTCACAAACTGA
* *
49073527 GGGTATTTGAGTAATTTTACAAATCGAGGGT
1 GGGTATTTCAGTAATTTTAC-AATCAAGGGT
49073558 CTTAACGATC
Statistics
Matches: 109, Mismatches: 24, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
53 2 0.02
54 101 0.93
55 6 0.06
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAATCAAGGGTATTTCAGTAATTTCACAAACTGA
Found at i:49073487 original size:81 final size:81
Alignment explanation
Indices: 49073396--49073556 Score: 202
Period size: 81 Copynumber: 2.0 Consensus size: 81
49073386 ATACAAGGTT
**
49073396 ATTTCAGTAA-TTCTACAAACTGA-GGGTATTTT-AGTAATTTTACAAGTCAAGGGTATTTCAGT
1 ATTTCAGTAATTTC-A-AAACTGAGGGGTATTTTGA-TAATTTTACAACCCAAGGGTATTTCAGT
49073458 AATTTCACAAATCGAGGGC
63 AATTTCACAAATCGAGGGC
* * * * *
49073477 ATTTCGGTAATTTCAAAATTTAGGGGTATTTTGATAATTTTACAACCCGAGGGTATTTGAGTAAT
1 ATTTCAGTAATTTCAAAACTGAGGGGTATTTTGATAATTTTACAACCCAAGGGTATTTCAGTAAT
*
49073542 TTTACAAATCGAGGG
66 TTCACAAATCGAGGG
49073557 TCTTAACGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 5 0.07
81 60 0.87
82 4 0.06
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (81 bp):
ATTTCAGTAATTTCAAAACTGAGGGGTATTTTGATAATTTTACAACCCAAGGGTATTTCAGTAAT
TTCACAAATCGAGGGC
Found at i:49073554 original size:27 final size:27
Alignment explanation
Indices: 49073395--49073557 Score: 145
Period size: 27 Copynumber: 6.0 Consensus size: 27
49073385 AATACAAGGT
* *
49073395 TATTTCAGTAATTCTACAAA-CTGAGGG
1 TATTTGAGTAATTTTACAAATC-GAGGG
* * *
49073422 TATTTTAGTAATTTTACAAGTCAAGGG
1 TATTTGAGTAATTTTACAAATCGAGGG
* *
49073449 TATTTCAGTAATTTCACAAATCGAGGG
1 TATTTGAGTAATTTTACAAATCGAGGG
* * **
49073476 CATTTCG-GTAATTTCA-AAATTTAGGGG
1 TATTT-GAGTAATTTTACAAATCGA-GGG
**
49073503 TATTTTGA-TAATTTTACAACCCGAGGG
1 TA-TTTGAGTAATTTTACAAATCGAGGG
49073530 TATTTGAGTAATTTTACAAATCGAGGG
1 TATTTGAGTAATTTTACAAATCGAGGG
49073557 T
1 T
49073558 CTTAACGATC
Statistics
Matches: 109, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
26 10 0.09
27 92 0.84
28 7 0.06
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
TATTTGAGTAATTTTACAAATCGAGGG
Found at i:49078210 original size:43 final size:42
Alignment explanation
Indices: 49078129--49078210 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
49078119 TCTGGGGTGT
* * *
49078129 TGGCATCGTACTTGATTTCGTGTAAGACCCTGTTTGGGACAG
1 TGGCATCGTACTTGATTACATGTAAGACCCTGTCTGGGACAG
*
49078171 TGGCATCGATATTTGATTACATGTAAGACCAC-GTCTGGGA
1 TGGCATCG-TACTTGATTACATGTAAGACC-CTGTCTGGGA
49078211 TGTTGGCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 8 0.24
43 25 0.74
44 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TGGCATCGTACTTGATTACATGTAAGACCCTGTCTGGGACAG
Found at i:49081102 original size:48 final size:48
Alignment explanation
Indices: 49081038--49081207 Score: 295
Period size: 48 Copynumber: 3.5 Consensus size: 48
49081028 AATATATATG
* *
49081038 TATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
49081086 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGACATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
49081134 TATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
49081182 TACGTGGTAAAGCCGAATGGCTAGTG
1 TATGTGGTAAAGCCGAATGGCTAGTG
49081208 ATTCGGCTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
Found at i:49081427 original size:37 final size:37
Alignment explanation
Indices: 49081377--49081479 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
49081367 GGAAATATAT
49081377 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49081414 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49081451 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
49081480 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49082808 original size:40 final size:40
Alignment explanation
Indices: 49082754--49083030 Score: 414
Period size: 40 Copynumber: 7.0 Consensus size: 40
49082744 ATTGAGAGTT
*
49082754 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
49082794 TTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
49082834 TTATGTCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
49082874 TTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
49082914 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
49082954 ATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
49082994 ATATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
49083031 AATTATGAGG
Statistics
Matches: 224, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.06
40 210 0.94
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:49083107 original size:29 final size:29
Alignment explanation
Indices: 49083036--49083168 Score: 123
Period size: 29 Copynumber: 4.7 Consensus size: 29
49083026 GCTGGAATTA
* *
49083036 TGAGGCACTGTGTGTGCAAGTTCT-TCAAT
1 TGAGGCACTATGTGTGCGAGTTCTGT-AAT
* * *
49083065 CGA-GCGCTATGTGTGTGA-TAT-TGGTAAT
1 TGAGGCACTATGTGTGCGAGT-TCT-GTAAT
*
49083093 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAGTTCTGTAAT
*
49083122 TGAGGCACTATGTGTGCGAGTTCTATAAT
1 TGAGGCACTATGTGTGCGAGTTCTGTAAT
* *
49083151 CGA-GCGCTATGTGTGCGA
1 TGAGGCACTATGTGTGCGA
49083169 AATCAGTCAG
Statistics
Matches: 86, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
27 2 0.02
28 31 0.36
29 51 0.59
30 2 0.02
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGTTCTGTAAT
Found at i:49086757 original size:48 final size:48
Alignment explanation
Indices: 49086693--49086862 Score: 295
Period size: 48 Copynumber: 3.5 Consensus size: 48
49086683 AATATATATG
* *
49086693 TATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
49086741 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGACATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
49086789 TATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
49086837 TACGTGGTAAAGCCGAATGGCTAGTG
1 TATGTGGTAAAGCCGAATGGCTAGTG
49086863 ATTCGGCTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
Found at i:49087082 original size:37 final size:37
Alignment explanation
Indices: 49087032--49087134 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
49087022 GGAAATATAT
49087032 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49087069 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49087106 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
49087135 GGTCTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49092271 original size:37 final size:37
Alignment explanation
Indices: 49092221--49092299 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49092211 TTATTACGAA
* * *
49092221 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
49092258 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
49092295 GTCTT
1 GTCTT
49092300 TAGAGCTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:49092577 original size:47 final size:47
Alignment explanation
Indices: 49092417--49092735 Score: 557
Period size: 47 Copynumber: 6.7 Consensus size: 47
49092407 GCCCTTCGGG
*
49092417 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
49092467 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
49092516 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49092563 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
49092610 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49092657 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
49092704 ACTTTCACATTCATCACATCAGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
49092736 ATACTATCAT
Statistics
Matches: 265, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
47 178 0.67
49 83 0.31
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:49097148 original size:20 final size:20
Alignment explanation
Indices: 49097123--49097162 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
49097113 ATGAAGTGAT
49097123 TGCATCTAGCTCCATGGTAC
1 TGCATCTAGCTCCATGGTAC
49097143 TGCATCTAGCTCCATGGTAC
1 TGCATCTAGCTCCATGGTAC
49097163 CAACAACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (20 bp):
TGCATCTAGCTCCATGGTAC
Found at i:49099683 original size:14 final size:15
Alignment explanation
Indices: 49099655--49099692 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
49099645 ATGTTTCACC
49099655 TCCTTCATT-CTCTTT
1 TCCTTC-TTCCTCTTT
49099670 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
49099684 TCCTTCTTC
1 TCCTTCTTC
49099693 TTGCCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.03, C:0.39, G:0.00, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:49101791 original size:46 final size:46
Alignment explanation
Indices: 49101739--49101908 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
49101729 GGCATCCGAA
49101739 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGA-
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGGAG
*** * *
49101785 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC-GAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGGAG
* *
49101832 CTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGGAG
49101878 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49101909 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 62 0.60
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGGAG
Found at i:49101888 original size:93 final size:93
Alignment explanation
Indices: 49101729--49101900 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
49101719 AGGATATTTG
*
49101729 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGGACTCGTTGAG
49101794 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
49101822 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGGA-CTCGTTGA
49101886 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
49101901 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGGACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:49110284 original size:21 final size:21
Alignment explanation
Indices: 49110245--49110285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49110235 AGTTTTTTTT
*
49110245 TTCCTTTTTTTCTCTCTTTCC
1 TTCCTTTTTGTCTCTCTTTCC
49110266 TTCCTTTTTGTCATC-CTTTC
1 TTCCTTTTTGTC-TCTCTTTC
49110286 TAGTGTTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.63
Consensus pattern (21 bp):
TTCCTTTTTGTCTCTCTTTCC
Found at i:49119459 original size:3 final size:3
Alignment explanation
Indices: 49119453--49119484 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
49119443 AACTTATGTT
49119453 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
49119485 TTAACCTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:49124114 original size:68 final size:64
Alignment explanation
Indices: 49123966--49124157 Score: 199
Period size: 68 Copynumber: 2.9 Consensus size: 64
49123956 ATATAGTTCG
*
49123966 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCAACATATATCCCGTA
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGCGACCTAGCAACATATATCCCGTA
* * *
49124030 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGTTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGTACAC-TCAGTACCACCCATGCGACCTAG---CAACAT-ATATC
**
49124093 TTGTA
60 CCGTA
* * ** * *
49124098 GCTCTCTTGTACACATGATGTACACTCAGCACCATACATGTGACCTAGCTACATACTATC
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGCGACCTAGCAACATA-TATC
49124158 TGTATCATCC
Statistics
Matches: 104, Mismatches: 15, Indels: 17
0.76 0.11 0.12
Matches are distributed among these distances:
63 1 0.01
64 43 0.41
65 8 0.08
67 6 0.06
68 45 0.43
69 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACTCAGTACCACCCATGCGACCTAGCAACATATATCCCGTA
Found at i:49154801 original size:40 final size:39
Alignment explanation
Indices: 49154739--49155025 Score: 287
Period size: 40 Copynumber: 7.2 Consensus size: 39
49154729 CGGATGATAA
* * *
49154739 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
* *
49154779 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
49154819 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
49154859 CCGGGCTAAGTCCCGAAGG-AGTTTGTGCGAGCTATTACAT
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAG-TACTATAT
** *
49154899 TTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
49154938 CCGGGCTAAGTCCCTAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * * *
49154978 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
49155018 CC-GGCTAA
1 CCGGGCTAA
49155026 ACTCCGAAGG
Statistics
Matches: 217, Mismatches: 23, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
39 42 0.19
40 170 0.78
41 5 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:49172787 original size:57 final size:57
Alignment explanation
Indices: 49172719--49172832 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
49172709 AACAAGCCAA
*
49172719 AATGAAGAAGAAACTTATGTTTTCTTATTTTTATTATAATTTTAACCTTTATTCATT
1 AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATAATTTTAACCTTTATTCATT
*
49172776 AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATTATTTTAACCTTTATTCATT
1 AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATAATTTTAACCTTTATTCATT
49172833 CCTTTAATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (57 bp):
AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATAATTTTAACCTTTATTCATT
Found at i:49185806 original size:38 final size:38
Alignment explanation
Indices: 49185752--49185828 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
49185742 AGCCCAAGTT
**
49185752 GAGTCCAATTTTGAAAAGGCTAATTTTGAGGGCTCTTA
1 GAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCTCTTA
49185790 GAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCTCTTA
1 GAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCTCTTA
49185828 G
1 G
49185829 GCATTCTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (38 bp):
GAGTCCAATTCAGAAAAGGCTAATTTTGAGGGCTCTTA
Found at i:49188324 original size:31 final size:31
Alignment explanation
Indices: 49188281--49188359 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
49188271 TTTAACGGTT
49188281 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
49188312 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
49188343 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
49188360 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:49188648 original size:26 final size:26
Alignment explanation
Indices: 49188577--49188699 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
49188567 CCTCTTTAAT
**
49188577 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
49188602 AACTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
49188627 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
49188653 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
49188679 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
49188700 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 31 0.35
26 58 0.65
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:49188687 original size:52 final size:51
Alignment explanation
Indices: 49188577--49188699 Score: 221
Period size: 52 Copynumber: 2.4 Consensus size: 51
49188567 CCTCTTTAAT
49188577 AACTGGGGCA-AAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
*
49188627 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
49188679 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
49188700 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
50 10 0.14
51 24 0.34
52 36 0.51
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
Found at i:49189507 original size:27 final size:27
Alignment explanation
Indices: 49189472--49189555 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
49189462 GGGCATATTC
* *
49189472 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
49189499 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
49189526 GTCACTTTACCCTACAGGAGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
49189553 GTC
1 GTC
49189556 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:49189722 original size:56 final size:54
Alignment explanation
Indices: 49189621--49189750 Score: 134
Period size: 56 Copynumber: 2.4 Consensus size: 54
49189611 ATCTACAAAC
* *
49189621 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCCATAATTTTTAAAAAGT
1 CAAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAA-TTTTAAAAA-T
* * * *** *
49189677 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAATTTTAAAAAT
** *
49189731 TGAGGGTATTTCGGTAACTT
1 CAAGGGTATTTCAGTAACTT
49189751 CACAAACCAG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
54 18 0.29
55 8 0.13
56 36 0.58
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAATTTTAAAAAT
Found at i:49189801 original size:81 final size:80
Alignment explanation
Indices: 49189710--49189908 Score: 281
Period size: 81 Copynumber: 2.5 Consensus size: 80
49189700 AAATCAGGGG
*
49189710 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAACTTCACAAACCAGTGGTATATTAGTAA
1 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAACTTCACAAACCAGAGGTATATTAGTAA
49189775 TTTTACAAACTAAGGA
66 TTTTACAAA-TAAGGA
* * *
49189791 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGAGGTATTTTAGTAA
1 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAACTTCACAAACCAGAGGTATATTAGTAA
* * *
49189856 TTTTACAGATTAGGG
66 TTTTACAAATAAGGA
* ** * *
49189871 TATTATGGTAATTTTACTGATCGAGGGTATTTTGGTAA
1 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAA
49189909 TTTTGTAAAC
Statistics
Matches: 106, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 37 0.35
81 69 0.65
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAACTTCACAAACCAGAGGTATATTAGTAA
TTTTACAAATAAGGA
Found at i:49189900 original size:53 final size:54
Alignment explanation
Indices: 49189771--49189912 Score: 175
Period size: 53 Copynumber: 2.6 Consensus size: 54
49189761 TGGTATATTA
*
49189771 GTAATTTTACAAACTA-AGGATATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GTAATTTTACAAACCAGAGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTCG
* *
49189825 GTAATTTTACAAACCAGAGGTATTTTAGTAATTTTACAGATT-AGGGTATTAT-G
1 GTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAATTGAGGGTATT-TCG
** *
49189878 GTAATTTTACTGATC-GAGGGTATTTTGGTAATTTT
1 GTAATTTTACAAACCAGA-GGTATTTTGGTAATTTT
49189913 GTAAACTAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
52 2 0.03
53 37 0.47
54 36 0.46
55 3 0.04
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
Found at i:49189953 original size:27 final size:27
Alignment explanation
Indices: 49189594--49189953 Score: 210
Period size: 27 Copynumber: 13.3 Consensus size: 27
49189584 TTTCATCCTA
* * * *
49189594 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
49189621 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** *
49189648 CAATGGTATTTCCATAATTTTTAAAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-T
* **
49189677 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
49189704 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * *
49189731 TGAGGGTATTTCGGTAACTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
49189757 CCAGTGGTATATTAGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
49189784 CTAAGGATATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
** *
49189812 TGAGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
49189838 CCAGAGGTATTTTAGTAATTTTACAGAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * **
49189866 -TAGGGTATTATGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
49189892 CGAGGGTATTTTGGTAATTTTGTAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
49189918 CTAATGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
49189946 CGAGGGTA
1 CAAGGGTA
49189954 AAACAGTAAT
Statistics
Matches: 257, Mismatches: 64, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
26 26 0.10
27 202 0.79
28 16 0.06
29 13 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:49189961 original size:27 final size:27
Alignment explanation
Indices: 49189931--49190061 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
49189921 ATGGTATTTT
*
49189931 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
49189958 AGTAATTCTGTAAATCAAGGTTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49189985 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49190012 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49190039 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
49190062 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:49190098 original size:81 final size:81
Alignment explanation
Indices: 49189890--49190099 Score: 204
Period size: 81 Copynumber: 2.6 Consensus size: 81
49189880 AATTTTACTG
* * * * * * *
49189890 ATCGAGGGTATTTTGGTAATTTTGTAAACTAATGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
*
49189955 AACAGTAATTCTGTAA
66 AACAGTAATTCTATAA
* * ** * * *** * *
49189971 ATCAAGGTTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
*
49190036 AACGGTAATTCTATAA
66 AACAGTAATTCTATAA
* * * *
49190052 ATCGAGGGTACTTTGGTAATTTTACAATTTGAGGGCATTTCAGTAATT
1 ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATT
49190100 TAGTAAACTA
Statistics
Matches: 95, Mismatches: 34, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
AACAGTAATTCTATAA
Found at i:49223063 original size:40 final size:40
Alignment explanation
Indices: 49222939--49223103 Score: 174
Period size: 40 Copynumber: 4.1 Consensus size: 40
49222929 CGGAATTTAA
** * *
49222939 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAAC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
49222979 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49223019 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49223059 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49223099 CCGGA
1 CCGGA
49223104 CATCATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.04
40 91 0.86
41 11 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49230957 original size:40 final size:41
Alignment explanation
Indices: 49230852--49230996 Score: 167
Period size: 40 Copynumber: 3.6 Consensus size: 41
49230842 GCTACTCGTT
*
49230852 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* *
49230892 CAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* * * *
49230932 CAAATGCCTTC-GGATCTTAGTCCGGA-T-TGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAC-TCGCA
49230972 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49230997 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 25 0.27
40 64 0.70
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:49234827 original size:10 final size:10
Alignment explanation
Indices: 49234812--49234840 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
49234802 GTGTGGTGAT
49234812 GATCCTTGAC
1 GATCCTTGAC
49234822 GATCCTTGAC
1 GATCCTTGAC
49234832 GATCCTTGA
1 GATCCTTGA
49234841 GCTTGCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (10 bp):
GATCCTTGAC
Found at i:49238700 original size:47 final size:46
Alignment explanation
Indices: 49238475--49238732 Score: 186
Period size: 47 Copynumber: 5.5 Consensus size: 46
49238465 TGTGTGAGCT
* * * **
49238475 AGTGTAAGA-CATGTCTGGGACATGCATCGAC-CACATTATGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGCATCGACTC-GA-GATGATAGCC
* ** * * *
49238521 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTAGACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGAC-TCGAGATGATAGCC
* * * * * *
49238569 AGAGTAA-AACACGTCTAGGACATGCATCGGCCTCGAGACG-TAGGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACTCGAGATGATA-GCC
* * * *
49238615 AGTGTAAGA-CATATTTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGATAGCC
* *
49238661 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATG-TGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGAT-AGCC
49238708 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
49238733 GCATTGGCAC
Statistics
Matches: 169, Mismatches: 31, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
45 4 0.02
46 62 0.37
47 75 0.44
48 27 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGATAGCC
Found at i:49254467 original size:23 final size:23
Alignment explanation
Indices: 49254441--49254495 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
49254431 ATCGCAGCGT
*
49254441 AGCTGCTAATAGAAATGCATCAA
1 AGCTGCTAATAGAAATGCAGCAA
* *
49254464 AGCTACTAATAGTAATGCAGCAA
1 AGCTGCTAATAGAAATGCAGCAA
49254487 AGCTGCTAA
1 AGCTGCTAA
49254496 GAGCGGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (23 bp):
AGCTGCTAATAGAAATGCAGCAA
Found at i:49258046 original size:47 final size:47
Alignment explanation
Indices: 49257992--49258194 Score: 343
Period size: 47 Copynumber: 4.3 Consensus size: 47
49257982 TTAGGATTTT
** *
49257992 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49258039 ATGTGATGAATGTGAACATGCATATATGTGATAAGACCGAATCGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
49258086 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
49258133 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
49258180 ATGTGATGAACGTGA
1 ATGTGATGAATGTGA
49258195 GTGTGACAGC
Statistics
Matches: 146, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49259785 original size:29 final size:29
Alignment explanation
Indices: 49259752--49259825 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
49259742 GTTGTGAGAT
* *
49259752 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
49259781 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
49259810 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49259826 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:49266800 original size:27 final size:28
Alignment explanation
Indices: 49266637--49266787 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
49266627 GAGATTGGCG
* * * *
49266637 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
49266666 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49266694 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49266722 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49266750 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
49266777 CTGAGTGTGCG
1 CTAAGTGTGCG
49266788 GACTTAATAT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 24 0.21
28 78 0.67
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:49270473 original size:29 final size:29
Alignment explanation
Indices: 49270440--49270513 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
49270430 GTTGTGAGAT
* *
49270440 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
49270469 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
49270498 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49270514 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Done.