Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 148 of 311
Found at i:50314135 original size:27 final size:26
Alignment explanation
Indices: 50313997--50314145 Score: 101
Period size: 27 Copynumber: 5.5 Consensus size: 26
50313987 AAATTGTACA
50313997 GCACTAAGTGTGCG-ATTCGACTATGT-T
1 GCACTAAGTGTGCGAATT-GA-T-TGTAT
*
50314024 GCACTAAGTGTGCGAAATGAATATG-AT
1 GCACTAAGTGTGCGAATTG-AT-TGTAT
* **
50314051 GCACTAAGTGTGCGAATTGACCATG-CG
1 GCACTAAGTGTGCGAATTGA--TTGTAT
* *
50314078 GCACTAAGTGTGCGATTTGATTACGT-G
1 GCACTAAGTGTGCGAATTGATT--GTAT
*
50314105 GCACTAAGTGTGCGAGTTGATTGTAT
1 GCACTAAGTGTGCGAATTGATTGTAT
*
50314131 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
50314146 GGCTCAATAT
Statistics
Matches: 102, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 95 0.93
28 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTGATTGTAT
Found at i:50320913 original size:40 final size:39
Alignment explanation
Indices: 50320837--50320931 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 39
50320827 ACATCTCTGT
* * *
50320837 CCAACCCAACACACC-ATGTAGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAATATAGGGATAAAATCGACCCAC
* *
50320875 CCAACCCTACACACCAAGTATAGGGATAAAATCTACCCAT
1 CCAACCCTACACACCAA-TATAGGGATAAAATCGACCCAC
*
50320915 CCAACCCTACATACCAA
1 CCAACCCTACACACCAA
50320932 ATGGTACCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
38 14 0.29
39 1 0.02
40 34 0.69
ACGTcount: A:0.39, C:0.37, G:0.11, T:0.14
Consensus pattern (39 bp):
CCAACCCTACACACCAATATAGGGATAAAATCGACCCAC
Found at i:50321421 original size:40 final size:39
Alignment explanation
Indices: 50321345--50321439 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 39
50321335 ACATCTCTGT
* * *
50321345 CCAACCCAACACACC-ATGTAGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAATATAGGGATAAAATCGACCCAC
* *
50321383 CCAACCCTACACACCAAGTATAGGGATAAAATCTACCCAT
1 CCAACCCTACACACCAA-TATAGGGATAAAATCGACCCAC
*
50321423 CCAACCCTACATACCAA
1 CCAACCCTACACACCAA
50321440 ATGGTACCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
38 14 0.29
39 1 0.02
40 34 0.69
ACGTcount: A:0.39, C:0.37, G:0.11, T:0.14
Consensus pattern (39 bp):
CCAACCCTACACACCAATATAGGGATAAAATCGACCCAC
Found at i:50321739 original size:508 final size:508
Alignment explanation
Indices: 50320784--50321789 Score: 2012
Period size: 508 Copynumber: 2.0 Consensus size: 508
50320774 CGTATGCATA
50320784 ACAGATCAGATTATTAGATAAACATGCCCACTAACCCTGCACAACATCTCTGTCCAACCCAACAC
1 ACAGATCAGATTATTAGATAAACATGCCCACTAACCCTGCACAACATCTCTGTCCAACCCAACAC
50320849 ACCATGTAGGGATAGAATCGACCCACCCAACCCTACACACCAAGTATAGGGATAAAATCTACCCA
66 ACCATGTAGGGATAGAATCGACCCACCCAACCCTACACACCAAGTATAGGGATAAAATCTACCCA
50320914 TCCAACCCTACATACCAAATGGTACCATAAAACGGTGCATATCTGATACATGCAGCATAACTGCC
131 TCCAACCCTACATACCAAATGGTACCATAAAACGGTGCATATCTGATACATGCAGCATAACTGCC
50320979 AGATAACAGGCTATTAGCCTTTCAGTCTTCCTTCTCTTCACAACAATCCCCACCCAATGCAATGC
196 AGATAACAGGCTATTAGCCTTTCAGTCTTCCTTCTCTTCACAACAATCCCCACCCAATGCAATGC
50321044 AACATAAATAATATGGCAAACTTATATGCAAAAATCAGATCATACCATCATCAAGTCAGAACAGA
261 AACATAAATAATATGGCAAACTTATATGCAAAAATCAGATCATACCATCATCAAGTCAGAACAGA
50321109 TATACAAAATTAGACAGATATACATGCTAACATTAACATGCTTTTGCATACAATCCAGTAACAAA
326 TATACAAAATTAGACAGATATACATGCTAACATTAACATGCTTTTGCATACAATCCAGTAACAAA
50321174 TCAGACTATGGGGTCTAAGTAATGCTTACTGACCCTACAGTCTGGTCACAATTGACTTGGGTGAC
391 TCAGACTATGGGGTCTAAGTAATGCTTACTGACCCTACAGTCTGGTCACAATTGACTTGGGTGAC
50321239 CCGTGAAACCTTACAGAACATTTAAAACAATTTGGGCTCACATTTAAAACCTT
456 CCGTGAAACCTTACAGAACATTTAAAACAATTTGGGCTCACATTTAAAACCTT
50321292 ACAGATCAGATTATTAGATAAACATGCCCACTAACCCTGCACAACATCTCTGTCCAACCCAACAC
1 ACAGATCAGATTATTAGATAAACATGCCCACTAACCCTGCACAACATCTCTGTCCAACCCAACAC
50321357 ACCATGTAGGGATAGAATCGACCCACCCAACCCTACACACCAAGTATAGGGATAAAATCTACCCA
66 ACCATGTAGGGATAGAATCGACCCACCCAACCCTACACACCAAGTATAGGGATAAAATCTACCCA
50321422 TCCAACCCTACATACCAAATGGTACCATAAAACGGTGCATATCTGATACATGCAGCATAACTGCC
131 TCCAACCCTACATACCAAATGGTACCATAAAACGGTGCATATCTGATACATGCAGCATAACTGCC
50321487 AGATAACAGGCTATTAGCCTTTCAGTCTTCCTTCTCTTCACAACAATCCCCACCCAATGCAATGC
196 AGATAACAGGCTATTAGCCTTTCAGTCTTCCTTCTCTTCACAACAATCCCCACCCAATGCAATGC
50321552 AACATAAATAATATGGCAAACTTATATGCAAAAATCAGATCATACCATCATCAAGTCAGAACAGA
261 AACATAAATAATATGGCAAACTTATATGCAAAAATCAGATCATACCATCATCAAGTCAGAACAGA
50321617 TATACAAAATTAGACAGATATACATGCTAACATTAACATGCTTTTGCATACAATCCAGTAACAAA
326 TATACAAAATTAGACAGATATACATGCTAACATTAACATGCTTTTGCATACAATCCAGTAACAAA
50321682 TCAGACTATGGGGTCTAAGTAATGCTTACTGACCCTACAGTCTGGTCACAATTGACTTGGGTGAC
391 TCAGACTATGGGGTCTAAGTAATGCTTACTGACCCTACAGTCTGGTCACAATTGACTTGGGTGAC
50321747 CCGTGAAACCTTACAGAACATTTAAAACAATTTGGGCTCACAT
456 CCGTGAAACCTTACAGAACATTTAAAACAATTTGGGCTCACAT
50321790 GCTTGTGTGT
Statistics
Matches: 498, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
508 498 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (508 bp):
ACAGATCAGATTATTAGATAAACATGCCCACTAACCCTGCACAACATCTCTGTCCAACCCAACAC
ACCATGTAGGGATAGAATCGACCCACCCAACCCTACACACCAAGTATAGGGATAAAATCTACCCA
TCCAACCCTACATACCAAATGGTACCATAAAACGGTGCATATCTGATACATGCAGCATAACTGCC
AGATAACAGGCTATTAGCCTTTCAGTCTTCCTTCTCTTCACAACAATCCCCACCCAATGCAATGC
AACATAAATAATATGGCAAACTTATATGCAAAAATCAGATCATACCATCATCAAGTCAGAACAGA
TATACAAAATTAGACAGATATACATGCTAACATTAACATGCTTTTGCATACAATCCAGTAACAAA
TCAGACTATGGGGTCTAAGTAATGCTTACTGACCCTACAGTCTGGTCACAATTGACTTGGGTGAC
CCGTGAAACCTTACAGAACATTTAAAACAATTTGGGCTCACATTTAAAACCTT
Found at i:50331989 original size:29 final size:30
Alignment explanation
Indices: 50331933--50331990 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
50331923 ATTTTCGAGC
* * **
50331933 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCACTTTACCAAAGT
50331963 CTAGGGGCAAAA-GGTCACTTTACCAAAG
1 CTAGGGGCAAAATGGTCACTTTACCAAAG
50331991 ATATAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCACTTTACCAAAGT
Found at i:50332388 original size:46 final size:45
Alignment explanation
Indices: 50332330--50332502 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 45
50332320 TCACTTGTGT
* *
50332330 GAGCTAGTGTAAGACATGTCTGGGACATGTATCAGCCACATT-ATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAG-C-CATTGA-GAC
50332376 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATTGAGAC
* * *
50332422 GAGTCCTAGTGTAAGACATGTCTGGGACATGCATCAGCTA-CGAGAT
1 GAG-CC-AGTGTAAGACATGTCTGGGACATGCATCAGCCATTGAGAC
* * *
50332468 GTGTCAGTGTAAGACCATGTCTAGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
50332503 GACACAGATA
Statistics
Matches: 110, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
44 9 0.08
45 20 0.18
46 35 0.32
47 31 0.28
48 15 0.14
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATTGAGAC
Found at i:50332528 original size:94 final size:93
Alignment explanation
Indices: 50332333--50332553 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 93
50332323 CTTGTGTGAG
* *
50332333 CTAGTGTAAGACATGTCTGGGACATGTATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGAT-AGAGCCAGTGTAAGACCATGTCT
* ** **
50332398 GGGACATGGCATCAGCATTGAGACGAGTC
65 AGGACATGGCATCAGCACAGAGACGAGAA
* * *
50332427 CTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GAT-GTGTCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATAGAGCCAGTGTAAGACCATGTCT
* *
50332490 AGGACATGGCATC-GACACAGATATGCTAGAA
65 AGGACATGGCATCAG-CACAGAGA--CGAGAA
*
50332521 CTTGTGTAAGACCATGTCTGGGACATGTCATCA
1 CTAGTGTAAGA-CATGTCTGGGACATG-CATCA
50332554 AAACTTGACC
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 1 0.01
92 37 0.34
94 49 0.45
95 16 0.15
96 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (93 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATAGAGCCAGTGTAAGACCATGTCTA
GGACATGGCATCAGCACAGAGACGAGAA
Found at i:50343867 original size:20 final size:21
Alignment explanation
Indices: 50343828--50343867 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50343818 GTTGAAATAG
50343828 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
*
50343849 CCACACGGGCGTG-TGCCCT
1 CCACACGAGCGTGTTGCCCT
50343868 ATTTCAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:50350238 original size:46 final size:46
Alignment explanation
Indices: 50350107--50350272 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 46
50350097 TGTGAGCTAG
* * * * *
50350107 TGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCCAA
1 TGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GACGAGAGCCAA
* * * *
50350153 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGTGCTAA
1 TGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGAGAGCCAA
* *
50350201 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGCCAG
1 TGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG-AGAGCCAA
50350247 TGTAAGACATGTCTAGGACATGCATC
1 TGTAAGACATGTCTAGGACATGCATC
50350273 AGCTAGATGT
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 50 0.50
47 27 0.27
48 22 0.22
49 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGAGAGCCAA
Found at i:50351838 original size:42 final size:42
Alignment explanation
Indices: 50351733--50351872 Score: 113
Period size: 42 Copynumber: 3.3 Consensus size: 42
50351723 CCGAGATATC
** * * *
50351733 GTGTAAGACTGTGTTTGGGACATAGGCCTCA-ATTTGAGATTTAA
1 GTGTAAGACCATGTTTGGGACATAGGCATCATATCT--GATTT-T
* * *
50351777 GTGTAAGACTATGTCTGGGACATCGGCATCATATCTGATTTT
1 GTGTAAGACCATGTTTGGGACATAGGCATCATATCTGATTTT
* * *
50351819 GTGTAAGACCCTGTTTGGGACAGAGGCATCGATA-CTGAATTAT
1 GTGTAAGACCATGTTTGGGACATAGGCATC-ATATCTG-ATTTT
*
50351862 ATGTAAGACCA
1 GTGTAAGACCA
50351873 CGTCCGGGAC
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
42 28 0.35
43 21 0.27
44 27 0.34
45 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTTTGGGACATAGGCATCATATCTGATTTT
Found at i:50356943 original size:28 final size:28
Alignment explanation
Indices: 50356878--50357056 Score: 279
Period size: 28 Copynumber: 6.4 Consensus size: 28
50356868 GAGATTGGCG
* * * *
50356878 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
50356907 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50356935 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
50356963 CTAAGTGTGAGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50356991 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50357019 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50357046 CTGAGTGTGCG
1 CTAAGTGTGCG
50357057 GACTTAATAT
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 24 0.17
28 102 0.72
29 15 0.11
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:50365139 original size:28 final size:28
Alignment explanation
Indices: 50365100--50365253 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
50365090 TAAATTGTAC
50365100 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50365128 AGCACTAAGTGTGCGAGTTTGATTATAC
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50365156 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
50365184 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
50365212 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50365239 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50365254 GACTTAATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 24 0.20
28 97 0.80
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:50372676 original size:12 final size:12
Alignment explanation
Indices: 50372659--50372688 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
50372649 CCATCCGAAG
50372659 TATATATACATA
1 TATATATACATA
50372671 TATATATACATA
1 TATATATACATA
50372683 -ATATAT
1 TATATAT
50372689 GCCCATTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATATACATA
Found at i:50373264 original size:26 final size:28
Alignment explanation
Indices: 50373156--50373301 Score: 193
Period size: 28 Copynumber: 5.5 Consensus size: 28
50373146 TAAATTGTAC
50373156 AGCACTAAGT-TGCGAGTTTGA-T-TAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50373181 AG--C-AAGTGTGCGAGTTTGATTATAC
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50373206 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50373234 AGCACTAAGTGTGCG-G-TTGTTTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
50373260 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50373287 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50373302 GACTAAATAT
Statistics
Matches: 107, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
22 4 0.04
23 12 0.11
24 1 0.01
25 6 0.06
26 23 0.21
27 26 0.24
28 35 0.33
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:50373269 original size:54 final size:54
Alignment explanation
Indices: 50373153--50373302 Score: 197
Period size: 53 Copynumber: 2.9 Consensus size: 54
50373143 GTTTAAATTG
50373153 TACAGCACTAAGT-TGCGAGTTTGATTA-TAG--C-AAGTGTGCGAGTTTGATTA
1 TACAGCACTAAGTGTGCGAGTTTGATTATTAGCACTAAGTGTGCG-GTTTGATTA
*
50373203 TACAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGG-TTGTTTA
1 TACAGCACTAAGTGTGCGAGTTTGATTAT-TAGCACTAAGTGTGCGGTTTGATTA
* *
50373257 TATAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGAGTTTGATTAT-TAGCACTAAGTGTGCGG
50373303 ACTAAATATA
Statistics
Matches: 90, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
50 13 0.14
51 14 0.16
53 27 0.30
54 25 0.28
55 2 0.02
56 9 0.10
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (54 bp):
TACAGCACTAAGTGTGCGAGTTTGATTATTAGCACTAAGTGTGCGGTTTGATTA
Found at i:50373312 original size:27 final size:27
Alignment explanation
Indices: 50373201--50373312 Score: 75
Period size: 27 Copynumber: 4.1 Consensus size: 27
50373191 CGAGTTTGAT
* * * *
50373201 TATACAGCACTAAGTGTGCGAGTTTGAT
1 TATATAGCACTAAGTGTGCGAG-CTAAA
* * ***
50373229 TATGTAGCACTAAGTGTGCG-GTTGTT
1 TATATAGCACTAAGTGTGCGAGCTAAA
* * *
50373255 TATATAGCACTAAGTGTGCGAGTTGAT
1 TATATAGCACTAAGTGTGCGAGCTAAA
*
50373282 TATATAGCACTGAGTGTGCG-GACTAAA
1 TATATAGCACTAAGTGTGCGAG-CTAAA
50373309 TATA
1 TATA
50373313 CTTTTGAATC
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.33
27 31 0.42
28 18 0.25
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
TATATAGCACTAAGTGTGCGAGCTAAA
Found at i:50386385 original size:28 final size:29
Alignment explanation
Indices: 50386352--50386452 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
50386342 TATAGTAAGT
* *
50386352 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATATAACTTGAAC
*
50386380 TCGCACACTTAGTGCTATATAACTTGAAC
1 CCGCACACTTAGTGCTATATAACTTGAAC
* *
50386409 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATATAACTTGAAC
50386438 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50386453 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 20 0.30
29 46 0.70
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATATAACTTGAAC
Found at i:50394401 original size:28 final size:29
Alignment explanation
Indices: 50394368--50394468 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
50394358 TATAGTAAGT
* * *
50394368 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
50394396 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
50394425 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
50394454 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50394469 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:50397775 original size:10 final size:10
Alignment explanation
Indices: 50397754--50397795 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
50397744 AATGAAATTC
50397754 TAAAAGATAAA
1 TAAAA-ATAAA
50397765 TAAAAATAAA
1 TAAAAATAAA
*
50397775 TAAAGATAAA
1 TAAAAATAAA
*
50397785 TGAAAATAAA
1 TAAAAATAAA
50397795 T
1 T
50397796 CCTAAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 23 0.82
11 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:50397779 original size:20 final size:20
Alignment explanation
Indices: 50397756--50397795 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
50397746 TGAAATTCTA
50397756 AAAGATAAATAAAAATAAAT
1 AAAGATAAATAAAAATAAAT
*
50397776 AAAGATAAATGAAAATAAAT
1 AAAGATAAATAAAAATAAAT
50397796 CCTAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:50408558 original size:31 final size:29
Alignment explanation
Indices: 50408517--50408584 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
50408507 AATATGCTCC
50408517 TAGTCCCTTTACTTTTTATACATTT-GAAATT
1 TAGTCCCTTTA--TTTT-TACATTTAGAAATT
* *
50408548 TAGTCTCTTTATTTTTACTTTTAGAAATT
1 TAGTCCCTTTATTTTTACATTTAGAAATT
50408577 TAGTCCCT
1 TAGTCCCT
50408585 ATACTATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 6 0.18
29 17 0.52
31 10 0.30
ACGTcount: A:0.24, C:0.16, G:0.07, T:0.53
Consensus pattern (29 bp):
TAGTCCCTTTATTTTTACATTTAGAAATT
Found at i:50412640 original size:17 final size:18
Alignment explanation
Indices: 50412615--50412648 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50412605 TTAATTGAGT
50412615 TCATCTTAG-TTAATAAC
1 TCATCTTAGATTAATAAC
*
50412632 TCATTTTAGATTAATAA
1 TCATCTTAGATTAATAA
50412649 ATGAGTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (18 bp):
TCATCTTAGATTAATAAC
Found at i:50412647 original size:18 final size:17
Alignment explanation
Indices: 50412594--50412648 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
50412584 TGAATAAATT
50412594 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
50412613 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
*
50412630 ACTCATTTTAGATTAATA
1 ACTCATCTTAG-TTAATA
50412648 A
1 A
50412649 ATGAGTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 9 0.30
18 8 0.27
19 13 0.43
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:50417413 original size:44 final size:44
Alignment explanation
Indices: 50417353--50417512 Score: 143
Period size: 44 Copynumber: 3.7 Consensus size: 44
50417343 GGTATTGATC
* *
50417353 TGAATTAACGTGTAAGACTATGTCTGGGACACAGACATCGAAT-
1 TGAATTTACGTGTAAGACCATGTCTGGGACACAGACATCGAATA
* *
50417396 TGAAATTTACGTGTAAGACCATGTCCGGGACATC-GACATCGTATA
1 TG-AATTTACGTGTAAGACCATGTCTGGGACA-CAGACATCGAATA
* * * *
50417441 TG-ATTT-CGTATAAGACCCTGTCTGGGACAGAGTCATCG-ATA
1 TGAATTTACGTGTAAGACCATGTCTGGGACACAGACATCGAATA
* * * *
50417482 CTGAA-TTACATGTAATACCACGTCCGGGACA
1 -TGAATTTACGTGTAAGACCATGTCTGGGACA
50417513 TTGACATTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
41 3 0.03
42 30 0.32
43 24 0.25
44 35 0.37
45 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
TGAATTTACGTGTAAGACCATGTCTGGGACACAGACATCGAATA
Found at i:50425913 original size:40 final size:40
Alignment explanation
Indices: 50425754--50425938 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
50425744 TATTCGGATG
*
50425754 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * * **
50425797 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
50425837 ATTTCTGGGCTAAGAT-CCGAAGGCATGTGTGTGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* * *
50425877 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
50425917 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
50425939 TACTTGGTTT
Statistics
Matches: 116, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
39 15 0.13
40 70 0.60
41 1 0.01
43 30 0.26
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:50430152 original size:43 final size:43
Alignment explanation
Indices: 50430026--50430183 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
50430016 ATGTGTTATG
* * *
50430026 GTGTAAGACCAAGTCTGGGACGTTGGTATTGAT-TTGTGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGATTT-C
** * *
50430070 GTGTAAGACCATGTCTAAGACATTGGCATC-ATATATGATTTC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTC
* *
50430112 GTGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTTC
* * *
50430155 ATATAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
50430184 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 27 0.29
43 41 0.44
44 25 0.27
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTC
Found at i:50436304 original size:73 final size:73
Alignment explanation
Indices: 50436213--50436354 Score: 257
Period size: 73 Copynumber: 1.9 Consensus size: 73
50436203 TAAGCATGGT
50436213 TGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCAAAAAATGTGAAAT
1 TGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCAAAAAATGTGAAAT
50436278 GTCAGGGG
66 GTCAGGGG
* **
50436286 TGTGGTCGAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGTGAAAAATGTGAAAT
1 TGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCAAAAAATGTGAAAT
50436351 GTCA
66 GTCA
50436355 AGGGCAAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.37
Consensus pattern (73 bp):
TGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCAAAAAATGTGAAAT
GTCAGGGG
Found at i:50436939 original size:85 final size:86
Alignment explanation
Indices: 50436782--50436946 Score: 228
Period size: 85 Copynumber: 1.9 Consensus size: 86
50436772 ATATGTGTTA
* *
50436782 TCGTGTAAGACCACGTTTGGGACGTTGGCATCGATTTTTGATTTACATGTAAGACCATGTCTAGG
1 TCGTGTAAGACCACGTTTGGGACGTTGGCATCGATATTTGATTTACATGTAAGACCACGTCTAGG
50436847 ACATTGACATCGTATATGATT
66 ACATTGACATCGTATATGATT
* * *
50436868 TCGTGTACGACC-CTTTCTGGGACAG-TGGCATCGGTATTTGA-TTACATGTAAGACCACGTCTA
1 TCGTGTAAGACCACGTT-TGGGAC-GTTGGCATCGATATTTGATTTACATGTAAGACCACGTCTA
* *
50436930 GGACGTTGACATTGTAT
64 GGACATTGACATCGTAT
50436947 GAGCTTATGA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 38 0.54
86 31 0.44
87 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (86 bp):
TCGTGTAAGACCACGTTTGGGACGTTGGCATCGATATTTGATTTACATGTAAGACCACGTCTAGG
ACATTGACATCGTATATGATT
Found at i:50447380 original size:48 final size:47
Alignment explanation
Indices: 50447317--50447446 Score: 170
Period size: 48 Copynumber: 2.7 Consensus size: 47
50447307 ATTTACATGG
* *
50447317 CTTCGGGCCAAGATATTAGCACTTCGGGTGCGAGTTTCATTAATTTGA
1 CTTC-GGCCATGATATTAGCACTTCGGGTGCGAGTTACATTAATTTGA
* *
50447365 CTTCAGGCCATGATATTAGCACTTCGGGTGCGAGTTACATTGATTTGG
1 CTTC-GGCCATGATATTAGCACTTCGGGTGCGAGTTACATTAATTTGA
* * *
50447413 CTTCGTGTCATGATATTGGCACTTAGGGTGCGAG
1 CTTCG-GCCATGATATTAGCACTTCGGGTGCGAG
50447447 ACTCTTGAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 72 0.99
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (47 bp):
CTTCGGCCATGATATTAGCACTTCGGGTGCGAGTTACATTAATTTGA
Found at i:50448278 original size:25 final size:25
Alignment explanation
Indices: 50448214--50448281 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
50448204 TAGGAGGGAG
* *
50448214 AATGTTCACACAAGTTGTAACGGTA
1 AATGTTCACACGAGTTATAACGGTA
* * *
50448239 ACTGCTCACACGAGTTATAACTGTA
1 AATGTTCACACGAGTTATAACGGTA
*
50448264 AATGTTCACATGAGTTAT
1 AATGTTCACACGAGTTAT
50448282 GAAATGGGTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (25 bp):
AATGTTCACACGAGTTATAACGGTA
Found at i:50451098 original size:20 final size:20
Alignment explanation
Indices: 50451084--50451154 Score: 108
Period size: 20 Copynumber: 3.5 Consensus size: 20
50451074 GTTGAAATGA
50451084 ATGAATTACTGTTGATACAG
1 ATGAATTACTGTTGATACAG
50451104 ATGAATTACTGTTGATACAG
1 ATGAATTACTGTTGATACAG
* *
50451124 ATAAATTACTGTT-ATTACTG
1 ATGAATTACTGTTGA-TACAG
50451144 ATGAATTACTG
1 ATGAATTACTG
50451155 GTTATAGGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 1 0.02
20 46 0.98
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (20 bp):
ATGAATTACTGTTGATACAG
Found at i:50451178 original size:40 final size:38
Alignment explanation
Indices: 50451103--50451200 Score: 92
Period size: 39 Copynumber: 2.5 Consensus size: 38
50451093 TGTTGATACA
*
50451103 GATGAATTACTGTTGATACAGATAAATTACTGTTATTACT
1 GATGAATTACTGTTGATACAGATAAACTACTGTTA-TA-T
* *
50451143 GATGAATTACTGGTT-ATA-GGATGAACTACTAGTTATAT
1 GATGAATTACT-GTTGATACAGATAAACTACT-GTTATAT
* *
50451181 GAATGAATTACAGTTTATAC
1 G-ATGAATTACTGTTGATAC
50451201 GAATAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
38 5 0.10
39 23 0.47
40 18 0.37
41 3 0.06
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (38 bp):
GATGAATTACTGTTGATACAGATAAACTACTGTTATAT
Found at i:50451199 original size:20 final size:18
Alignment explanation
Indices: 50451144--50451195 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
50451134 GTTATTACTG
* *
50451144 ATGAATTACTGGTTATAGG
1 ATGAATTAC-AGTTATAGA
*
50451163 ATGAACTACTAGTTATATGA
1 ATGAATTAC-AGTTATA-GA
50451183 ATGAATTACAGTT
1 ATGAATTACAGTT
50451196 TATACGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.37
Consensus pattern (18 bp):
ATGAATTACAGTTATAGA
Found at i:50451204 original size:20 final size:20
Alignment explanation
Indices: 50451082--50451204 Score: 87
Period size: 20 Copynumber: 6.2 Consensus size: 20
50451072 ATGTTGAAAT
*
50451082 GAATGAATTACTGTTGATAC
1 GAATGAATTACTGTTTATAC
*
50451102 -AGATGAATTACTGTTGATAC
1 GA-ATGAATTACTGTTTATAC
*
50451122 -AGATAAATTACTG-TTATTAC
1 GA-ATGAATTACTGTTTA-TAC
*
50451142 TG-ATGAATTACTGGTTATA-
1 -GAATGAATTACTGTTTATAC
* * *
50451161 GGATGAACTACTAG-TTATAT
1 GAATGAATTACT-GTTTATAC
*
50451181 GAATGAATTACAGTTTATAC
1 GAATGAATTACTGTTTATAC
50451201 GAAT
1 GAAT
50451205 AAAAATGAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
18 1 0.01
19 18 0.21
20 64 0.74
21 3 0.03
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.37
Consensus pattern (20 bp):
GAATGAATTACTGTTTATAC
Found at i:50454054 original size:2 final size:2
Alignment explanation
Indices: 50454047--50454083 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
50454037 GTTCAATGAT
50454047 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
50454084 AAGTTCATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:50455974 original size:47 final size:46
Alignment explanation
Indices: 50455801--50455972 Score: 181
Period size: 47 Copynumber: 3.7 Consensus size: 46
50455791 TTTGTGTGCT
*
50455801 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTCGATGATG--AGCC
* * * *
50455847 AATGTAAGACATGTCTGGGACATGGCGTCGGCCTCGATTTTGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTCGA---TGATGAGCC
* *
50455895 AGTGTAAGACTATGTCTAGGACATGGCATC-GACTTGATGGATGAGCC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGACTCGAT-GATGAGCC
50455942 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG
50455973 ACATTCTACC
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
45 1 0.01
46 25 0.24
47 42 0.40
48 18 0.17
49 17 0.16
51 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGACTCGATGATGAGCC
Found at i:50457752 original size:43 final size:43
Alignment explanation
Indices: 50457691--50457785 Score: 163
Period size: 43 Copynumber: 2.2 Consensus size: 43
50457681 CAAACGGGCT
* *
50457691 GAGAGACGGCCATGTGTCTCTATCGTGTGAGGGACACGACCTG
1 GAGACACGGCCATGTGTCTCTATCGTGTGAAGGACACGACCTG
*
50457734 GAGACACGGCCATGTGTCTCTATCGTGTGAAGGACACGGCCTG
1 GAGACACGGCCATGTGTCTCTATCGTGTGAAGGACACGACCTG
50457777 GAGACACGG
1 GAGACACGG
50457786 ACGTGTGGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.22, C:0.24, G:0.35, T:0.19
Consensus pattern (43 bp):
GAGACACGGCCATGTGTCTCTATCGTGTGAAGGACACGACCTG
Found at i:50457804 original size:43 final size:43
Alignment explanation
Indices: 50457714--50457805 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
50457704 GTGTCTCTAT
* * * * * *
50457714 CGTGTGAGGGACACGACCTGGAGACACGGCCATGTGTCTCTAT
1 CGTGTGAAGGACACGACCTGGAGACACGGACATGTGGCCCGAC
* *
50457757 CGTGTGAAGGACACGGCCTGGAGACACGGACGTGTGGCCCGAC
1 CGTGTGAAGGACACGACCTGGAGACACGGACATGTGGCCCGAC
50457800 CGTGTG
1 CGTGTG
50457806 GTTCGATGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.20, C:0.26, G:0.37, T:0.17
Consensus pattern (43 bp):
CGTGTGAAGGACACGACCTGGAGACACGGACATGTGGCCCGAC
Found at i:50461044 original size:16 final size:15
Alignment explanation
Indices: 50461025--50461054 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
50461015 ACGCGTGAAA
50461025 AAATTTAAATCAAAAT
1 AAATTTAAAT-AAAAT
50461041 AAATTTAAATAAAA
1 AAATTTAAATAAAA
50461055 GTTGTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATTTAAATAAAAT
Found at i:50461917 original size:24 final size:24
Alignment explanation
Indices: 50461890--50461949 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
50461880 AATTGTGTTA
*
50461890 TTTGATAATAATAAATTTTA-ATTT
1 TTTGATAATAAT-AATTTCATATTT
* *
50461914 TTTGAAAATTAATTATTTCATATTT
1 TTTGATAA-TAATAATTTCATATTT
50461939 TTT-ATAATAAT
1 TTTGATAATAAT
50461950 TTATATCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.13
24 15 0.50
25 11 0.37
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (24 bp):
TTTGATAATAATAATTTCATATTT
Found at i:50462899 original size:35 final size:35
Alignment explanation
Indices: 50462851--50462920 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
50462841 GTCTTTCCCA
50462851 TGAATGTAAGTATGTTATGATCTCAGGTGAAAACT
1 TGAATGTAAGTATGTTATGATCTCAGGTGAAAACT
*
50462886 TGAATGTATGTATGTTATGATCTCAGGTGAAAACT
1 TGAATGTAAGTATGTTATGATCTCAGGTGAAAACT
50462921 GAAAAGAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.36
Consensus pattern (35 bp):
TGAATGTAAGTATGTTATGATCTCAGGTGAAAACT
Found at i:50464748 original size:96 final size:96
Alignment explanation
Indices: 50464582--50464771 Score: 310
Period size: 96 Copynumber: 2.0 Consensus size: 96
50464572 TTCTTTTTGC
*
50464582 TCCTCTTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAATCAAGCTTATTGGGCTCCTTGTCT
1 TCCTCTTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTCT
*
50464647 GCTCCATCGTTCCCTTCGATGACAGACTTAT
66 ACTCCATCGTTCCCTTCGATGACAGACTTAT
* *
50464678 TCCTCCTTT-CCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCTTGTC
1 TCCT-CTTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTC
* *
50464742 TACTCCATCGTTCCTTTCGATGATAGACTT
65 TACTCCATCGTTCCCTTCGATGACAGACTT
50464772 CTTCGAACAC
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 83 0.95
97 4 0.05
ACGTcount: A:0.12, C:0.34, G:0.16, T:0.38
Consensus pattern (96 bp):
TCCTCTTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTCT
ACTCCATCGTTCCCTTCGATGACAGACTTAT
Found at i:50465801 original size:19 final size:18
Alignment explanation
Indices: 50465777--50465838 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
50465767 CGCTGTTTAT
*
50465777 TTTTAATTAGATAAACTTA
1 TTTTAATCA-ATAAACTTA
* *
50465796 TTTTAATCACTCAACTTA
1 TTTTAATCAATAAACTTA
* *
50465814 TTTTAATCACTCAACTTA
1 TTTTAATCAATAAACTTA
*
50465832 ATTTAAT
1 TTTTAAT
50465839 GAATGCATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
18 31 0.79
19 8 0.21
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTTAATCAATAAACTTA
Found at i:50465813 original size:18 final size:18
Alignment explanation
Indices: 50465790--50465838 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
50465780 TAATTAGATA
50465790 AACTTATTTTAATCACTC
1 AACTTATTTTAATCACTC
50465808 AACTTATTTTAATCACTC
1 AACTTATTTTAATCACTC
*
50465826 AACTTAATTTAAT
1 AACTTATTTTAAT
50465839 GAATGCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45
Consensus pattern (18 bp):
AACTTATTTTAATCACTC
Found at i:50469081 original size:30 final size:30
Alignment explanation
Indices: 50469047--50469109 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
50469037 ATTGATTTGA
*
50469047 AAGAGGTGATCTAATAACTAAGAATTAAAT
1 AAGAGGTGATCCAATAACTAAGAATTAAAT
*
50469077 AAGAGGTGATCCAATAACTAAGAATTAACT
1 AAGAGGTGATCCAATAACTAAGAATTAAAT
50469107 AAG
1 AAG
50469110 TAATCAACGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (30 bp):
AAGAGGTGATCCAATAACTAAGAATTAAAT
Found at i:50471281 original size:19 final size:19
Alignment explanation
Indices: 50471257--50471296 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
50471247 TGAATCGAGA
50471257 ATGCTAAAAGATAATTGGG
1 ATGCTAAAAGATAATTGGG
50471276 ATGCTAAAAGATAATTGGG
1 ATGCTAAAAGATAATTGGG
50471295 AT
1 AT
50471297 AGTAGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (19 bp):
ATGCTAAAAGATAATTGGG
Found at i:50471479 original size:47 final size:47
Alignment explanation
Indices: 50471367--50471489 Score: 121
Period size: 47 Copynumber: 2.6 Consensus size: 47
50471357 GCACTTGTGT
*
50471367 GTGCTAGTGTAAGACATGTCAGGGACAT-GCATCAGCCACATTATGAGA
1 GTGCTAGTGTAAGACATGTCAGGGACATGGAATCAG-C-CATTATGAGA
* * *
50471415 --GCCAGAGTAAGACCATGTCCGGGACATGGAATCAG-CATTGA-GACGA
1 GTGCTAGTGTAAGA-CATGTCAGGGACATGGAATCAGCCATT-ATGA-GA
*
50471461 GTGCTAGTGTAAGACATGTCTGGGACATG
1 GTGCTAGTGTAAGACATGTCAGGGACATG
50471490 CATCGGCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
45 6 0.10
46 13 0.21
47 27 0.44
48 16 0.26
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (47 bp):
GTGCTAGTGTAAGACATGTCAGGGACATGGAATCAGCCATTATGAGA
Found at i:50475077 original size:46 final size:46
Alignment explanation
Indices: 50475027--50475199 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
50475017 TGGTTGAGCA
* *
50475027 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
* * * *
50475073 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAA--ATG
* *
50475118 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
*
50475166 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50475200 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 61 0.57
47 29 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
Found at i:50475183 original size:93 final size:93
Alignment explanation
Indices: 50475024--50475194 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50475014 GGATGGTTGA
*
50475024 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGCATGCAAATGTCCGAACTCGTTGAGT
50475089 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
50475117 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGCATGCAAATGTCCGAACTCGTTGAGT
50475182 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50475195 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGCATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:50482411 original size:30 final size:30
Alignment explanation
Indices: 50482377--50482436 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
50482367 ATTTAATACG
50482377 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
50482407 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
50482437 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:50484527 original size:47 final size:45
Alignment explanation
Indices: 50484469--50484634 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 45
50484459 GAGAGCCAGA
*
50484469 GTAAGACCATGTCTGGGACATGACATTGGCATTGAGACGAGTGCTAGT
1 GTAAGACCATGTCTGGGACATG-CATCGGC-TTGAGA-GAGTGCTAGT
* * * * * *
50484517 GTAAGA-CATGTCTAGGACATGCATCAGCCTCGATAGTGATAGCCAGT
1 GTAAGACCATGTCTGGGACATGCATC-GGCTTGAGAGAG-T-GCTAGT
*
50484564 GTAAGA-CATGCCTGGGACATGCATCGGC-TGAGAGATGTGCTAGT
1 GTAAGACCATGTCTGGGACATGCATCGGCTTGAGAGA-GTGCTAGT
*
50484608 GTAAGACCATGTCTGGGATATGACATC
1 GTAAGACCATGTCTGGGACATG-CATC
50484635 AACGTGCATA
Statistics
Matches: 96, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.11
45 20 0.21
46 15 0.16
47 44 0.46
48 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GTAAGACCATGTCTGGGACATGCATCGGCTTGAGAGAGTGCTAGT
Found at i:50484665 original size:94 final size:93
Alignment explanation
Indices: 50484414--50484665 Score: 282
Period size: 94 Copynumber: 2.7 Consensus size: 93
50484404 GGCACTTGTG
* * *
50484414 TGTGCTAGTGTAAGACATGTCAGGGACATGCATCAAC-CACATTATGAGAGCCAGAGTAAGACCA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACTCATA-TATGAGAGCCAGTGTAAGA-CA
* *
50484478 TGTCTGGGACATGACATTGGCATTGAGACGA
64 TGCCTGGGACATGACATCGGCA-TGAGACGA
* * * *
50484509 -GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGATA-GTGATAGCCAGTGTAAGACA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCA-ACTC-ATATATGAGAGCCAGTGTAAGACA
50484572 TGCCTGGGACATG-CATCGGC-TGAGA-GA
64 TGCCTGGGACATGACATCGGCATGAGACGA
* *
50484599 TGTGCTAGTGTAAGACCATGTCTGGGATATGACATCAACGTGCATATATGAGAGCTAGTGTAAGA
1 TGTGCTAGTGTAAGA-CATGTCTGGGACATG-CATCAAC-T-CATATATGAGAGCCAGTGTAAGA
50484664 CA
62 CA
50484666 ATGTCTAGGA
Statistics
Matches: 133, Mismatches: 15, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
90 2 0.02
91 19 0.14
92 14 0.11
93 15 0.11
94 64 0.48
95 16 0.12
96 1 0.01
97 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (93 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACTCATATATGAGAGCCAGTGTAAGACATG
CCTGGGACATGACATCGGCATGAGACGA
Found at i:50486030 original size:31 final size:31
Alignment explanation
Indices: 50485992--50486066 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
50485982 ACGGTTACTG
50485992 GGCCGAAGCCTTTTCATAAATCAAATCACTA
1 GGCCGAAGCCTTTTCATAAATCAAATCACTA
* * *
50486023 GGCCGAAGCCTTTTTATGAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCAAATCACTA
50486054 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
50486067 ATTGTAAACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCAAATCACTA
Found at i:50486150 original size:42 final size:42
Alignment explanation
Indices: 50486090--50486181 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
50486080 TGGCCCATAG
*
50486090 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
50486132 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
50486174 GCCCATTT
1 GCCCATTT
50486182 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:50486403 original size:26 final size:26
Alignment explanation
Indices: 50486326--50486473 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
50486316 CCTCTTTAAT
50486326 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
50486351 AACTGGGGCA-AATCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
50486376 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
50486402 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
50486428 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
50486454 AACTGGGGCAT-GGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
50486474 AGCACTTCCT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
25 41 0.37
26 69 0.63
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:50486438 original size:52 final size:52
Alignment explanation
Indices: 50486326--50486473 Score: 239
Period size: 52 Copynumber: 2.9 Consensus size: 52
50486316 CCTCTTTAAT
* *
50486326 AACTGGGGCA-AAGCCCTTTTCAGTAAACTGGGGCA-AATCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
50486376 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
50486428 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAT-GGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
50486474 AGCACTTCCT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
50 10 0.11
51 31 0.34
52 50 0.55
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:50487345 original size:27 final size:27
Alignment explanation
Indices: 50487283--50487348 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
50487273 GGGCATATTC
*
50487283 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCTTACAGGGGCTTTACG
50487310 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCTTACAGGGGCTTTACG
**
50487337 GTCTTTTTACCT
1 GTCACTTTACCT
50487349 AATATGGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCACTTTACCTTACAGGGGCTTTACG
Found at i:50487431 original size:27 final size:27
Alignment explanation
Indices: 50487378--50487764 Score: 217
Period size: 27 Copynumber: 14.3 Consensus size: 27
50487368 TTTCACCCTA
* * * * *
50487378 CAAGGGTTTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
50487405 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
50487432 AAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* * * *
50487461 CAAGGTTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
50487488 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
** * * *
50487515 TGAGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
50487542 C-AGTGGTATTTT-GTTAATTTTACAAAC
1 CAAG-GGTATTTTAG-TAATTTTATAAAC
* * * *
50487569 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
50487596 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
50487623 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
* * *
50487649 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
50487676 CAAGGGTATTTTAGTAATTTTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *** * * *
50487703 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*** * *
50487730 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
50487757 CGAGGGTA
1 CAAGGGTA
50487765 AAACGATAAT
Statistics
Matches: 290, Mismatches: 59, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.08
27 237 0.82
28 18 0.06
29 11 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:50487560 original size:110 final size:108
Alignment explanation
Indices: 50487378--50487641 Score: 253
Period size: 110 Copynumber: 2.4 Consensus size: 108
50487368 TTTCACCCTA
* * * ***
50487378 CAAGGGTTTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACAAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACAAATGGTATTT
* * * * ** *
50487443 CTATAATTTTTAGAAAGTCAAGGTTATTTTTGTAATTTTGTAAAT
66 CTATAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTACAAAC
*** * *
50487488 CAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACAAATGGTATTT
* *
50487553 -TGTTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
66 CT-ATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAC
* * * * **
50487596 CAGGGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTT
50487642 TACTGATCGA
Statistics
Matches: 125, Mismatches: 28, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
107 16 0.13
108 42 0.34
109 10 0.08
110 57 0.46
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (108 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACAAATGGTATTT
CTATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAC
Found at i:50487676 original size:80 final size:80
Alignment explanation
Indices: 50487467--50487697 Score: 259
Period size: 81 Copynumber: 2.9 Consensus size: 80
50487457 AAGTCAAGGT
* ** * ** *
50487467 TATTTTTGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCAGTA
1 TATTTTGGTAATTTTACAAA-CGAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTA
*
50487531 ATTTCACAAACCAGTGG
64 ATTTTACAAACCAGTGG
* * *
50487548 TATTTTGTTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAA
1 TATTTTGGTAATTTTACAAACGA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAA
*
50487613 TTTTACAGACCAG-GG
65 TTTTACAAACCAGTGG
* * ** *
50487628 TATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAA
1 TATTTTGGTAATTTTAC-AAACGAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAA
50487693 TTTTA
65 TTTTA
50487698 TAAATCGAGG
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
80 62 0.48
81 65 0.51
82 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.42
Consensus pattern (80 bp):
TATTTTGGTAATTTTACAAACGAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAAT
TTTACAAACCAGTGG
Found at i:50487705 original size:54 final size:54
Alignment explanation
Indices: 50487380--50487764 Score: 251
Period size: 54 Copynumber: 7.1 Consensus size: 54
50487370 TCACCCTACA
* * * * * *
50487380 AGGGTTTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAA-CAA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATC-G
* * * * * * * *
50487434 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGTTATTTTTGTAATTTTGTAAATCA
1 AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTTAGTAATTTTATAAATCG
*** * * * *
50487490 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * * *
50487543 AGTGGTATTTTGTTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
50487597 AGGGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTA-TAAATCG
**
50487651 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCG
*** * * ** * *** *
50487705 AGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCG
50487759 AGGGTA
1 AGGGTA
50487765 AAACGATAAT
Statistics
Matches: 265, Mismatches: 55, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
53 44 0.17
54 168 0.63
55 17 0.06
56 35 0.13
57 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCG
Found at i:50487765 original size:54 final size:53
Alignment explanation
Indices: 50487662--50487794 Score: 176
Period size: 54 Copynumber: 2.5 Consensus size: 53
50487652 GGGTATTTTG
* *** *
50487662 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA-A
* *
50487716 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAA
*
50487769 GATAATTTTGTAAATCGAGGGTAAAA
1 G-TAATTTTGTAAATCAAGGGTAAAA
50487795 CGATAATTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 68 0.99
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (53 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAA
Found at i:50487795 original size:27 final size:27
Alignment explanation
Indices: 50487688--50487818 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 27
50487678 AGGGTATTTT
* * *
50487688 AGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAG
* *
50487715 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAG
*
50487742 AGTAATTCTATAAATCGAGGGTAAAACG
1 AGTAATTCTGTAAATCGAGGGTAAAA-G
*
50487770 A-TAATTTTGTAAATCGAGGGTAAAACG
1 AGTAATTCTGTAAATCGAGGGTAAAA-G
* *
50487797 A-TAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
50487819 CTTTGGTAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
27 92 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAG
Found at i:50487855 original size:81 final size:81
Alignment explanation
Indices: 50487678--50487856 Score: 180
Period size: 81 Copynumber: 2.2 Consensus size: 81
50487668 TTGTAAACCA
* * * *
50487678 AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATA
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAAGAGTAATTATGTAAATCAAGGGTAAAATA
*
50487743 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
*** * * ** ***
50487759 AGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGA-TAATTATGTAAATCGGGGGTACTTT
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAA-GAGTAATTATGTAAATCAAGGGTAAAAT
* * *
50487823 GGTAATTTTACAAGTCG
65 AGTAATTCTACAAATCG
50487840 AGGGTATTTCAATAATT
1 AGGGTATTTCAATAATT
50487857 GGTAAACTAA
Statistics
Matches: 75, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
81 74 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAAGAGTAATTATGTAAATCAAGGGTAAAATA
GTAATTCTACAAATCG
Found at i:50490353 original size:43 final size:43
Alignment explanation
Indices: 50490299--50490380 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
50490289 GATATATGTG
** *
50490299 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGCAGTCCGAGTTCATAATGGATGCGA
*
50490342 GCATCCGAGCTCGTTGAGCAGTCTGAGTTCATAATGGAT
1 GCATCCGAGCTCGTTGAGCAGTCCGAGTTCATAATGGAT
50490381 ATGATACATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGCAGTCCGAGTTCATAATGGATGCGA
Found at i:50494698 original size:39 final size:39
Alignment explanation
Indices: 50494648--50494747 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
50494638 AACTTAATGT
*
50494648 CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCATGCCGGTGATAAATTCAAGTTTATAC
* *
50494687 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAAGTTTATAC
1 CTAGCAGGCCTCATGCCGGTGATAAATTCAAGTTTATAC
*
50494726 CTAGCAGG-CTAATTGCCGGTGA
1 CTAGCAGGCCTCA-TGCCGGTGA
50494748 AATAATAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.04
39 53 0.96
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (39 bp):
CTAGCAGGCCTCATGCCGGTGATAAATTCAAGTTTATAC
Found at i:50501564 original size:43 final size:43
Alignment explanation
Indices: 50501515--50501596 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
50501505 GATATATGTG
** *
50501515 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGCAGTCCGAGTTCATAATGGATGCGA
*
50501558 GCATCCGAGCTCGTTGAGCAGTCCGAGTTGATAATGGAT
1 GCATCCGAGCTCGTTGAGCAGTCCGAGTTCATAATGGAT
50501597 ACGATACATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.27
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGCAGTCCGAGTTCATAATGGATGCGA
Found at i:50501826 original size:28 final size:28
Alignment explanation
Indices: 50501794--50501848 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
50501784 GCTATGTTTG
50501794 TTTATGTGGCACTTATGTGCAAGTTTTA
1 TTTATGTGGCACTTATGTGCAAGTTTTA
*
50501822 TTTATGTGGTACTTATGTGCAAGTTTT
1 TTTATGTGGCACTTATGTGCAAGTTTT
50501849 CGTGTATCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.09, G:0.22, T:0.49
Consensus pattern (28 bp):
TTTATGTGGCACTTATGTGCAAGTTTTA
Found at i:50510222 original size:12 final size:12
Alignment explanation
Indices: 50510205--50510242 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
50510195 TTTTAATATC
*
50510205 ATATCTTATTCA
1 ATATCTAATTCA
50510217 ATATCTAATTCA
1 ATATCTAATTCA
*
50510229 ATCTCTAATTCA
1 ATATCTAATTCA
50510241 AT
1 AT
50510243 TTTCACAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATCTAATTCA
Found at i:50520016 original size:16 final size:15
Alignment explanation
Indices: 50519992--50520021 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
50519982 GCTTAGGCTG
50519992 AAAACTTGAAAAGCC
1 AAAACTTGAAAAGCC
50520007 AAAACGTTGAAAAGC
1 AAAAC-TTGAAAAGC
50520022 TGAAAAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.13
Consensus pattern (15 bp):
AAAACTTGAAAAGCC
Found at i:50520804 original size:34 final size:33
Alignment explanation
Indices: 50520717--50520800 Score: 114
Period size: 34 Copynumber: 2.5 Consensus size: 33
50520707 TTTGATTGCA
* *
50520717 TACTGTACTGATATGGACTAAGGCCCAGACTGC
1 TACTGTACTGAAATGGGCTAAGGCCCAGACTGC
** *
50520750 TTTTATCACTGAAATGGGCTAAGGCCCAGACTGC
1 TACTGT-ACTGAAATGGGCTAAGGCCCAGACTGC
50520784 TACTGTACTGAAATGGG
1 TACTGTACTGAAATGGG
50520801 GCTACGGCTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 14 0.33
34 28 0.67
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (33 bp):
TACTGTACTGAAATGGGCTAAGGCCCAGACTGC
Found at i:50521694 original size:43 final size:43
Alignment explanation
Indices: 50521628--50521746 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 43
50521618 ATCACATGTA
* * * *
50521628 TCGCATACATTATGAAGTTAGACCACTCAACGATCTCAGATGC
1 TCGCATACATAATGAACTCAGACCACTCAACGAGCTCAGATGC
* * *
50521671 TCGCATCCATAATGAACTCAGACCATTCAACGAGCTCGGATGC
1 TCGCATACATAATGAACTCAGACCACTCAACGAGCTCAGATGC
* * * *
50521714 -CACATATATAACGAAC-CCGTACCACTCAACGAG
1 TCGCATACATAATGAACTCAG-ACCACTCAACGAG
50521747 TTCGTACTTC
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 2 0.03
42 24 0.39
43 36 0.58
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (43 bp):
TCGCATACATAATGAACTCAGACCACTCAACGAGCTCAGATGC
Found at i:50524452 original size:47 final size:46
Alignment explanation
Indices: 50524379--50524691 Score: 209
Period size: 46 Copynumber: 6.7 Consensus size: 46
50524369 GGTAGAATGC
50524379 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCATGT
* * * * * *
50524426 CGATGCCATGTCCCAAACATGATCTTACACTGACT-ATCAAAATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC---A-TCATGT
* * *
50524475 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCGCAT-ATCCGCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--CATCAT----GT
* * * *
50524525 CGGTGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCAT-GT
* *
50524571 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATC-TCGA-GG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCATC-ATGT
* * *
50524616 CTGATG-CATGTCCCAAACATGTTCTTACACTGGCTC-TCATAATGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATGT
*
50524661 AGCAATG-CATGTCCCAGACAT-GTCTTACACT
1 --CGATGCCATGTCCCAGACATGGTCTTACACT
50524692 AGCACACAAA
Statistics
Matches: 210, Mismatches: 34, Indels: 46
0.72 0.12 0.16
Matches are distributed among these distances:
44 15 0.07
45 28 0.13
46 47 0.22
47 46 0.22
48 3 0.01
49 36 0.17
50 33 0.16
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATGT
Found at i:50524495 original size:49 final size:47
Alignment explanation
Indices: 50524377--50524647 Score: 195
Period size: 47 Copynumber: 5.7 Consensus size: 47
50524367 GGGGTAGAAT
* * *
50524377 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAG
* * * *
50524424 GTCGATGCCATGTCCCAAACATGATCTTACACTGACT-ATCAAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AA-TCAG
* *
50524473 GCCGACGCCATGTCCCAGACATGGTCTTACACT-AGCTC-TCGCATATCCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCAT--CA-ATCAG
* *
50524522 CGCCGGTGCCATGTCCCAGACATGGTCTTACACTGACACATC--TC-G
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAG
* * *
50524567 TAGTCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATC--TCGAG
1 --GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCAATC-AG
* * *
50524615 GCTGATG-CATGTCCCAAACATGTTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
50524648 GCTCTCATAA
Statistics
Matches: 180, Mismatches: 27, Indels: 34
0.75 0.11 0.14
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 33 0.18
47 43 0.24
48 3 0.02
49 38 0.21
50 34 0.19
51 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAG
Found at i:50524877 original size:28 final size:28
Alignment explanation
Indices: 50524845--50524900 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
50524835 TAATAACAAT
50524845 GTAGATGTATTATTTACATACAGCTTAC
1 GTAGATGTATTATTTACATACAGCTTAC
50524873 GTAGATGTATTATTTACATACAGCTTAC
1 GTAGATGTATTATTTACATACAGCTTAC
50524901 TTGTTTCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (28 bp):
GTAGATGTATTATTTACATACAGCTTAC
Found at i:50528714 original size:15 final size:15
Alignment explanation
Indices: 50528689--50528737 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
50528679 CATGAAAACC
* *
50528689 AAGATAAAGAAGTCT
1 AAGACAAAGAAATCT
*
50528704 AGGACAAAGAAATCT
1 AAGACAAAGAAATCT
* *
50528719 AAGATAAAGAAATCC
1 AAGACAAAGAAATCT
50528734 AAGA
1 AAGA
50528738 AACAATATGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.18, T:0.14
Consensus pattern (15 bp):
AAGACAAAGAAATCT
Found at i:50529987 original size:36 final size:36
Alignment explanation
Indices: 50529947--50530018 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
50529937 TCATCATAAT
50529947 TGTACTTTACCCAGAGACCTTGGCATCACATTTAAC
1 TGTACTTTACCCAGAGACCTTGGCATCACATTTAAC
*
50529983 TGTACTTTACCCAGATACCTTGGCATCACATTTAAC
1 TGTACTTTACCCAGAGACCTTGGCATCACATTTAAC
50530019 ATGGTCGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (36 bp):
TGTACTTTACCCAGAGACCTTGGCATCACATTTAAC
Found at i:50532667 original size:43 final size:43
Alignment explanation
Indices: 50532541--50532660 Score: 177
Period size: 43 Copynumber: 2.8 Consensus size: 43
50532531 ACATGTATCT
* * *
50532541 CATCCATTATGAACTCAGACCACTCAACAAGCTCAAATGCTCA
1 CATCCATAATGAACTTAGACCACTCAACGAGCTCAAATGCTCA
* **
50532584 TATCCATAATGAACTTAGACCACTCAACGAGCTCAAATGCTGG
1 CATCCATAATGAACTTAGACCACTCAACGAGCTCAAATGCTCA
*
50532627 CATCCATAATGAACTTGGACCACTCAACGAGCTC
1 CATCCATAATGAACTTAGACCACTCAACGAGCTC
50532661 GGATGCTACA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (43 bp):
CATCCATAATGAACTTAGACCACTCAACGAGCTCAAATGCTCA
Found at i:50536803 original size:50 final size:49
Alignment explanation
Indices: 50536693--50536920 Score: 294
Period size: 49 Copynumber: 4.6 Consensus size: 49
50536683 CTGGTACGCA
* * *
50536693 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
** * *
50536742 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCAGTACACG
* ** * *
50536792 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCAGTACACG
* * *
50536843 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
50536892 TAGTAGCCTGCACTTAGTACTACACACGT
1 TAGTAGCCTGCACTTAGTACTACACACGT
50536921 CACCTCACAA
Statistics
Matches: 153, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 68 0.44
50 48 0.31
51 37 0.24
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
Found at i:50559456 original size:28 final size:27
Alignment explanation
Indices: 50559394--50559468 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
50559384 CTTTAGAGTA
*
50559394 TGCCACAAAGGCTTCTTTTTCATAGAT
1 TGCCACAAAGGCTTCCTTTTCATAGAT
* ** *
50559421 CGTTACAAAGGTTTTCCTTTTCATAGAT
1 TGCCACAAAGG-CTTCCTTTTCATAGAT
50559449 TGCCACAAAGGCTTCCTTTT
1 TGCCACAAAGGCTTCCTTTT
50559469 ATGGCTTGTT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 16 0.42
28 22 0.58
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (27 bp):
TGCCACAAAGGCTTCCTTTTCATAGAT
Found at i:50562152 original size:31 final size:31
Alignment explanation
Indices: 50562117--50562176 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
50562107 CACCTTGACT
50562117 GAATGTATCATAACCATAGATATAAATATCC
1 GAATGTATCATAACCATAGATATAAATATCC
50562148 GAATGTATCATAACCATAGATATAAATAT
1 GAATGTATCATAACCATAGATATAAATAT
50562177 ATCATGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (31 bp):
GAATGTATCATAACCATAGATATAAATATCC
Found at i:50562472 original size:45 final size:45
Alignment explanation
Indices: 50562376--50562596 Score: 338
Period size: 45 Copynumber: 5.0 Consensus size: 45
50562366 CCAAATTCAT
* * *
50562376 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
50562419 TCATCGGCATTATAGCCTGCTAGGCTCAAAGGTCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
50562464 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
50562509 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
50562554 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
50562597 CTGTACAATA
Statistics
Matches: 161, Mismatches: 15, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
43 10 0.06
44 14 0.09
45 137 0.85
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:50562571 original size:135 final size:130
Alignment explanation
Indices: 50562334--50562596 Score: 348
Period size: 135 Copynumber: 2.0 Consensus size: 130
50562324 TTTTATCAAA
* * * *
50562334 TCACCGGCATTCAGCCTGCTAGGTTTAAAAACCCAAATTCATTCACCGGCATTTCGCCTGCTAGG
1 TCACCGGCATTCAGCCTGCTAGGCTCAAAAACCCAAAATCATTCACCGGCATTTAGCCTGCTAGG
* * * * * *
50562399 CTCGAGGCCCGAATAGTGTCTCATCGGCATTATAGCCTGCTAGGCTCAAAGGTCTGAATAGTATC
66 CTCAAGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
50562464 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAAT-ATCTCACTGGCATTATAGCCTG
1 TCACCGGCATT-CAGCCTGCTAGGCTCAAAAACCC-AA-AATCAT-TCACCGGCATT-TAGCCTG
50562528 CTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
61 CTAGGCTC-AAGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
50562593 AGTA
125 AGTA
50562597 CTGTACAATA
Statistics
Matches: 114, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
130 11 0.10
131 19 0.17
132 4 0.04
133 12 0.11
134 14 0.12
135 54 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (130 bp):
TCACCGGCATTCAGCCTGCTAGGCTCAAAAACCCAAAATCATTCACCGGCATTTAGCCTGCTAGG
CTCAAGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:50575824 original size:11 final size:11
Alignment explanation
Indices: 50575791--50575824 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50575781 TAGGGTTGGG
50575791 TTTTTTCTTTT
1 TTTTTTCTTTT
**
50575802 CCTTTTCTTTT
1 TTTTTTCTTTT
50575813 TTTTTTCTTTT
1 TTTTTTCTTTT
50575824 T
1 T
50575825 GAGGCAGGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:50581724 original size:30 final size:30
Alignment explanation
Indices: 50581688--50581756 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
50581678 TATCGTATCT
50581688 TGGGTTTCTTTAT-TCTAGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TAGATTTCTTTATTC
* *
50581718 TGGGTTTTTTTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTAGATTTCTTTATTC
*
50581748 -GGTTTTCTT
1 TGGGTTTCTT
50581757 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.10, C:0.12, G:0.16, T:0.62
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTAGATTTCTTTATTC
Found at i:50581756 original size:14 final size:15
Alignment explanation
Indices: 50581692--50581756 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
50581682 GTATCTTGGG
*
50581692 TTTCTTTATTCTAGA
1 TTTCTTTATTCTGGA
*
50581707 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
50581722 TTTTTTTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
50581737 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
50581751 TTTCTT
1 TTTCTT
50581757 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
14 10 0.24
15 30 0.71
16 2 0.05
ACGTcount: A:0.11, C:0.12, G:0.12, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:50584125 original size:49 final size:49
Alignment explanation
Indices: 50583886--50584117 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
50583876 TCTATTGTGA
* * * * *
50583886 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * * * * **
50583937 GATCACCTGTGTAGTACTAAGGGTAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
50583986 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
50584036 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** *
50584085 GGTTGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
50584118 TGCGTACCGG
Statistics
Matches: 154, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 77 0.50
50 42 0.27
51 35 0.23
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:50585653 original size:27 final size:27
Alignment explanation
Indices: 50585596--50585658 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
50585586 CTTTGCAGTG
* * *
50585596 ATCTATAAAAAGGAAGCCCTTGTGGCG
1 ATCTATGAAAAGGAAGCCCTTGTGACA
* * *
50585623 ATCTTTGAAAAGGAAGCCTTTGTTACA
1 ATCTATGAAAAGGAAGCCCTTGTGACA
50585650 ATCTATGAA
1 ATCTATGAA
50585659 GGAATGCTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (27 bp):
ATCTATGAAAAGGAAGCCCTTGTGACA
Found at i:50587052 original size:43 final size:42
Alignment explanation
Indices: 50586984--50587073 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 42
50586974 AGTGTACATC
* * *
50586984 GGCATCATATTTGATTTCGTGTAAGACC-CTGTCTGGAACAGT
1 GGCATCATATTTGATTACATATAAGACCAC-GTCTGGAACAGT
* *
50587026 GGCATCGATATTTGATTACATATAAGACCACGTCTGGGACATT
1 GGCATC-ATATTTGATTACATATAAGACCACGTCTGGAACAGT
50587069 GGCAT
1 GGCAT
50587074 TGTATGAGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 6 0.15
43 34 0.83
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
GGCATCATATTTGATTACATATAAGACCACGTCTGGAACAGT
Found at i:50591009 original size:43 final size:44
Alignment explanation
Indices: 50590962--50591123 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 44
50590952 ACATAGGATT
* *
50590962 TCAATATGTG--TTATCGTGTAAGACTATGTCTGGGACGTTGGCA
1 TCAATATGTGATTTA-CGTGTAAGACCATGTCTGGGACATTGGCA
*
50591005 TCAATTTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCAATATGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
* * * * * *
50591049 TC-GTATTTGATTT-TGTAG-AAGACCTTGTCTGGGATAGTGGCA
1 TCAATATGTGATTTACGT-GTAAGACCATGTCTGGGACATTGGCA
* * * *
50591091 TCGATATTTGA-TTACATGTAAGACCACGTCTGG
1 TCAATATGTGATTTACGTGTAAGACCATGTCTGG
50591124 TCTGTTGGCA
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 28 0.29
43 38 0.39
44 29 0.30
45 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (44 bp):
TCAATATGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:50594941 original size:12 final size:12
Alignment explanation
Indices: 50594924--50594948 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50594914 GCACCATGCA
50594924 TATATATATATG
1 TATATATATATG
50594936 TATATATATATG
1 TATATATATATG
50594948 T
1 T
50594949 TGATTAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TATATATATATG
Found at i:50597063 original size:48 final size:48
Alignment explanation
Indices: 50596894--50597173 Score: 228
Period size: 48 Copynumber: 5.8 Consensus size: 48
50596884 GTAAAATGCC
* ** *
50596894 GATGCCATATCCCGGACATGGTCTTACACTGGCTCTCATGCATCG-GTGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT--ATTGAG-GCT
* * * *** * *
50596944 GATGGCATGTCCCAAACATGGTCTTACACT-G-ACACATAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGAGGCT
* * *
50596990 GATTCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGAGGCT
* * *
50597038 GATGCCATGTCTCAAACATGGTCTTACACTGGCTCTCATAATGTGG-T
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGAGGCT
* * * * * * **
50597085 CGATGCCATGTCCTAGACGTGGTCTTACACTAGCACAT-ATATTAACACT
1 -GATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATATTGAGGCT
* *
50597134 GATGCCATGTCCCAGACATGGTCCTACACTGGCTCTCATA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA
50597174 ATGTGGCCCG
Statistics
Matches: 181, Mismatches: 42, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
46 31 0.17
47 3 0.02
48 118 0.65
49 3 0.02
50 26 0.14
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGAGGCT
Found at i:50597078 original size:96 final size:96
Alignment explanation
Indices: 50596885--50597174 Score: 268
Period size: 96 Copynumber: 3.0 Consensus size: 96
50596875 TACAAAAGTG
* *** * *
50596885 TAAAAT-GCCGATGCCATATCCCGGACATGGTCTTACACTGGCTCTCATGCATCG-GTGCTGATG
1 TAAAATGGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCACAT--ATTGAG-GCTGATG
* * *
50596948 GCATGTCCCAAACATGGTCTTACACT-G-ACACA
63 CCATGTCCCAAACATGGTCTTACACTGGCTCTCA
* *
50596980 TAACAAT-GCCGATTCCATGTTCC-AAACATGGTCTTACACTGGCTCGCATATTGAGGCTGATGC
1 TAA-AATGGCCGATGCCATG-TCCTAAACATGGTCTTACACTGGCTCACATATTGAGGCTGATGC
*
50597043 CATGTCTCAAACATGGTCTTACACTGGCTCTCA
64 CATGTCCCAAACATGGTCTTACACTGGCTCTCA
** * * * * * * * **
50597076 TAATGTGGTCGATGCCATGTCCTAGACGTGGTCTTACACTAGCACATATATTAACACTGATGCCA
1 TAAAATGGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCACATATTGAGGCTGATGCCA
* *
50597141 TGTCCCAGACATGGTCCTACACTGGCTCTCA
66 TGTCCCAAACATGGTCTTACACTGGCTCTCA
50597172 TAA
1 TAA
50597175 TGTGGCCCGT
Statistics
Matches: 162, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
94 34 0.21
95 9 0.06
96 116 0.72
97 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (96 bp):
TAAAATGGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCACATATTGAGGCTGATGCCA
TGTCCCAAACATGGTCTTACACTGGCTCTCA
Found at i:50597154 original size:144 final size:144
Alignment explanation
Indices: 50596909--50597173 Score: 331
Period size: 144 Copynumber: 1.8 Consensus size: 144
50596899 CATATCCCGG
* *
50596909 ACATGGTCTTACACTGGCTCTCATGCATCGGTGCTGATGGCATGTCCCAAACATGGTCTTACACT
1 ACATGGTCTTACACTGGCTCTCATGAATCGGTGCTGATGCCATGTCCCAAACATGGTCTTACACT
** * * *
50596974 GACACATAACAATGCCGATTCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCTG
66 GACACATAACAACACCGATGCCATGTCCCAAACATGGTCCTACACTGGCTCGCATATTGAGGCTG
50597039 ATGCCATGTCTCAA
131 ATGCCATGTCTCAA
* * * *
50597053 ACATGGTCTTACACTGGCTCTCAT-AAT--GTGGTCGATGCCATGTCCTAGACGTGGTCTTACAC
1 ACATGGTCTTACACTGGCTCTCATGAATCGGTGCT-GATGCCATGTCCCAAACATGGTCTTACAC
* * * *
50597115 T-AGCACATATATTAACACTGATGCCATGTCCCAGACATGGTCCTACACTGGCTCTCATA
65 TGA-CACATA-A-CAACACCGATGCCATGTCCCAAACATGGTCCTACACTGGCTCGCATA
50597174 ATGTGGCCCG
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
141 5 0.05
142 32 0.31
143 3 0.03
144 62 0.61
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (144 bp):
ACATGGTCTTACACTGGCTCTCATGAATCGGTGCTGATGCCATGTCCCAAACATGGTCTTACACT
GACACATAACAACACCGATGCCATGTCCCAAACATGGTCCTACACTGGCTCGCATATTGAGGCTG
ATGCCATGTCTCAA
Found at i:50597909 original size:37 final size:37
Alignment explanation
Indices: 50597859--50597934 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
50597849 GAACGGGGAG
*
50597859 TAAGCTTCAAAGCTTAGTAAGTTCATAAGAAAGCAAT
1 TAAGCTTCAAAGCTTAGTAAGTTCATAAGAAAACAAT
50597896 TAAGCTTCAAAGCTTAGTAAGTTCATAAGAAAACAAT
1 TAAGCTTCAAAGCTTAGTAAGTTCATAAGAAAACAAT
50597933 TA
1 TA
50597935 GCAACTCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (37 bp):
TAAGCTTCAAAGCTTAGTAAGTTCATAAGAAAACAAT
Found at i:50599091 original size:43 final size:43
Alignment explanation
Indices: 50599043--50599262 Score: 136
Period size: 43 Copynumber: 5.2 Consensus size: 43
50599033 CTGGCAATAA
*
50599043 GCCTGCTAGACCTTTAAGTCATATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCTATATCATTTCACCGGCATTAC
* *** * * * * *
50599086 GCCTGCTAG-GCTCGGAGCCCGATA--ATGTTCACCAGC-TGAAA
1 GCCTGCTAGACCTTTAAGTCCTATATCAT-TTCACCGGCAT-TAC
* *
50599127 GCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCTATATCATTTCACCGGCATTAC
* *** * *
50599170 ACCTGCTAGA-CTCGGAG-CCTGATA--ATATTCACCAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTCCT-ATATCAT-TTCACCGGCATT-AC
* *
50599211 GCTTGCTAGACCTTTAAGT-CTGATATCATTTCAACGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCT-ATATCATTTCACCGGCATTAC
50599254 GCCTGCTAG
1 GCCTGCTAG
50599263 GCTCAAAGCC
Statistics
Matches: 127, Mismatches: 36, Indels: 28
0.66 0.19 0.15
Matches are distributed among these distances:
40 7 0.06
41 36 0.28
42 35 0.28
43 42 0.33
44 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (43 bp):
GCCTGCTAGACCTTTAAGTCCTATATCATTTCACCGGCATTAC
Found at i:50599134 original size:41 final size:40
Alignment explanation
Indices: 50599089--50599221 Score: 115
Period size: 41 Copynumber: 3.2 Consensus size: 40
50599079 GCATTACGCC
* *
50599089 TGCTAGGCTCGGAGCCCGATAATGTTCACCAGCTGAAAGCT
1 TGCTAGACTCGGAGCCCGATAAT-TTCACCAGCTTAAAGCT
*** * * * *
50599130 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACA-CC
1 TGCTAGA-CTCGGAGCCCGATA--ATTTCACCAGC-TTAAAGCT
*
50599173 TGCTAGACTCGGAGCCTGATAATATTCACCAGCTTAAAGCT
1 TGCTAGACTCGGAGCCCGATAAT-TTCACCAGCTTAAAGCT
50599214 TGCTAGAC
1 TGCTAGAC
50599222 CTTTAAGTCT
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
40 6 0.09
41 23 0.33
42 19 0.28
43 16 0.23
44 5 0.07
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTAGACTCGGAGCCCGATAATTTCACCAGCTTAAAGCT
Found at i:50599286 original size:84 final size:84
Alignment explanation
Indices: 50599041--50599266 Score: 364
Period size: 84 Copynumber: 2.7 Consensus size: 84
50599031 CACTGGCAAT
*
50599041 AAGCCTGCTAGACCTTTAAGTCAT-ATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCC
1 AAGCTTGCTAGACCTTTAAGTC-TGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCC
*
50599105 CGATAATGTTCACCAGCTGA
65 CGATAATATTCACCAGCTGA
* * * *
50599125 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGACTCGGAGCCT
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCC
*
50599190 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTGA
*
50599209 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCAACGGCATTACGCCTGCTAGGCTC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTC
50599267 AAAGCCCCAA
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
84 130 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCC
GATAATATTCACCAGCTGA
Found at i:50601177 original size:14 final size:15
Alignment explanation
Indices: 50601148--50601177 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50601138 CAAAATTAAG
50601148 ACATGATACTTTCAC
1 ACATGATACTTTCAC
50601163 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
50601177 A
1 A
50601178 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:50605601 original size:40 final size:39
Alignment explanation
Indices: 50605564--50605706 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 39
50605554 GCTACTCGCT
* *
50605564 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAAT-TAGT-ACTAGCA
50605604 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGT-ACTAGCA
50605644 CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTTACTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGAATTAG-TACTAGCA
50605684 CAAATGCCTTCGGGGCTTAGCCC
1 CAAATGCCTTCGGGGCTTAGCCC
50605707 TGTTATCATC
Statistics
Matches: 98, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
40 95 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGGCTTAGCCCGGAATTAGTACTAGCA
Found at i:50608550 original size:42 final size:42
Alignment explanation
Indices: 50608503--50608634 Score: 117
Period size: 42 Copynumber: 3.1 Consensus size: 42
50608493 ACCTTTAAGT
* *
50608503 CCGATATCATTTCACCGGCATTACGCCTCCTAGGCTCGGAGC
1 CCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGC
* * * * ** *
50608545 CCGATA--ATATTCACCAGC-TTAAAGCTTGCTAGACCTTTAAGT
1 CCGATATCAT-TTCACCGGCATT-ACGCCTGCTAG-GCTCGAAGC
* *
50608587 CCAATATCATTTCACTGGCATTACGCCTGCTAGGCTCGAAGC
1 CCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGC
50608629 CCGATA
1 CCGATA
50608635 ATATTCACTA
Statistics
Matches: 65, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
40 4 0.06
41 16 0.25
42 25 0.38
43 16 0.25
44 4 0.06
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (42 bp):
CCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGC
Found at i:50608594 original size:84 final size:84
Alignment explanation
Indices: 50608482--50608714 Score: 358
Period size: 84 Copynumber: 2.8 Consensus size: 84
50608472 CACTGGCAAT
* * *
50608482 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTCCTAGGCTCGGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGCCC
50608547 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* *
50608566 AAGCTTGCTAGACCTTTAAGTCCAATATCATTTCACTGGCATTACGCCTGCTAGGCTCGAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGCCC
*
50608631 GATAATATTCACTAGCTTA
66 GATAATATTCACCAGCTTA
* * * * * *
50608650 AAGCTTGGTAGACCTTTCAGTTCGATATCATTTCAACGGCATTACACCTGCTAGGCTCAAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGCCC
50608715 CAAATTCATC
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 135 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGCCC
GATAATATTCACCAGCTTA
Found at i:50608618 original size:43 final size:43
Alignment explanation
Indices: 50608471--50608703 Score: 133
Period size: 43 Copynumber: 5.5 Consensus size: 43
50608461 CCTGATTTCA
* *
50608471 TCACTGGCAATAAGCCTGCTAGACCTTTAAGTCCGATATCATT
1 TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGATATCATT
* * * *** *
50608514 TCACCGGCATTACGCCTCCTAG-GCTCGGAGCCCGATA--ATAT
1 TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGATATCAT-T
* * *
50608555 TCACCAGC-TTAAAGCTTGCTAGACCTTTAAGTCCAATATCATT
1 TCACCGGCATT-AAGCCTGCTAGACCTTTAAGTCCGATATCATT
* * * ** *
50608598 TCACTGGCATTACGCCTGCTAG-GCTCGAAGCCCGATA--ATAT
1 TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGATATCAT-T
** * * * *
50608639 TCACTAGC-TTAAAGCTTGGTAGACCTTTCAGTTCGATATCATT
1 TCACCGGCATT-AAGCCTGCTAGACCTTTAAGTCCGATATCATT
*
50608682 TCAACGGCATTACA-CCTGCTAG
1 TCACCGGCATTA-AGCCTGCTAG
50608704 GCTCAAAGCC
Statistics
Matches: 134, Mismatches: 43, Indels: 26
0.66 0.21 0.13
Matches are distributed among these distances:
40 8 0.06
41 32 0.24
42 38 0.28
43 47 0.35
44 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGATATCATT
Found at i:50610624 original size:14 final size:15
Alignment explanation
Indices: 50610595--50610624 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50610585 AAAAATTAAG
50610595 ACATGATACTTTCAC
1 ACATGATACTTTCAC
50610610 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
50610624 A
1 A
50610625 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:50610803 original size:48 final size:48
Alignment explanation
Indices: 50610725--50610867 Score: 146
Period size: 48 Copynumber: 3.0 Consensus size: 48
50610715 TGTCACATGG
* *
50610725 CCGATGCCATGTCCCAGAC-TTAATCATACACTAGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATT-GTCTTACACTAGCACACATATCAACA
* * * ****
50610773 CCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATTGTCTTACACTAGCACACAT-ATCAACA
* * *
50610821 CTGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAAC
1 CCGATGCCATGTCCCAGACATTGTCTTACACTAGCACACATATCAAC
50610868 CCAATGTCTT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
47 2 0.03
48 68 0.92
49 4 0.05
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATTGTCTTACACTAGCACACATATCAACA
Found at i:50618122 original size:44 final size:44
Alignment explanation
Indices: 50618057--50618225 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 44
50618047 ATGTAACCGT
50618057 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCG-AG
* * * * * *
50618101 GCCGACGCATGTCCCAAACATGTCTGACAATGGCTAACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGAG
* * * *
50618147 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA--CATCTCGAG
**
50618193 ATCGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
50618226 GGCTCTCATT
Statistics
Matches: 99, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
44 30 0.30
45 1 0.01
46 45 0.45
47 13 0.13
48 10 0.10
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGAG
Found at i:50618260 original size:94 final size:90
Alignment explanation
Indices: 50618058--50618271 Score: 234
Period size: 94 Copynumber: 2.3 Consensus size: 90
50618048 TGTAACCGTG
*
50618058 CCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAAACATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCATAGCCGACGCATGTCCCAAACATG
*
50618123 TCTGACAATGGCTAACATCTTGAGG
66 TCTGACAATGGCTAACATCTTGAGA
* * * * *
50618148 CCGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATA-TCGATGCCATGTCCCAGA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCA--CATCTC-ATAGCCGACG-CATGTCCCAAA
* * ** *
50618212 CATGGTCTTACACTGGCTCTCAT-TATGTGA
62 CAT-GTCTGACAATGGCTAACATCT-TGAGA
* *
50618242 CTGATGCATGTCCCAGACATGTCTAACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
50618272 GGCGCACATA
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
90 33 0.32
92 9 0.09
93 16 0.16
94 45 0.44
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (90 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCATAGCCGACGCATGTCCCAAACATG
TCTGACAATGGCTAACATCTTGAGA
Found at i:50625979 original size:22 final size:22
Alignment explanation
Indices: 50625935--50625981 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
50625925 GAGACATAAT
* *
50625935 AAATATATCTTTATATGATAGA
1 AAATATATCTTTACATGAGAGA
50625957 AAAT-TATCTTTACATTGAGAGA
1 AAATATATCTTTACA-TGAGAGA
50625979 AAA
1 AAA
50625982 AATTTTAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (22 bp):
AAATATATCTTTACATGAGAGA
Found at i:50634825 original size:71 final size:71
Alignment explanation
Indices: 50634602--50635038 Score: 320
Period size: 71 Copynumber: 6.2 Consensus size: 71
50634592 TCAGCTTGCA
* * * * * *
50634602 CTAACTA-TTTTGGGGGCTGTGGTGTTGAACCTGCGAGCCTTTAGATCACAACTAGGAGCCTTAA
1 CTAACTATTTTTGGGGGCTGTGGTATTGAACCTGTGAGCCCTAAGATCACAGCTAGGAGCCTTAG
*
50634666 CT-TTCA
66 CTCTT-T
* * *
50634672 CTAACTATTTTGGGGGGCTATGGTATTGAACCTGCT-AGCCATAAGATCACAGCTAGGAGCCTTA
1 CTAACTATTTTTGGGGGCTGTGGTATTGAACCTG-TGAGCCCTAAGATCACAGCTAGGAGCCTTA
**
50634736 GCTCTCG
65 GCTCTTT
* * * * *
50634743 CTAACTATTTTTAGGGGTTGTAGTATTGAACTTGTGAGCCCTAAGATCACAGCTTGGAGCCTTAG
1 CTAACTATTTTTGGGGGCTGTGGTATTGAACCTGTGAGCCCTAAGATCACAGCTAGGAGCCTTAG
50634808 CTCTTT
66 CTCTTT
*** * ** * * *
50634814 CTAACTATTTTTTAAGG-TTTACAATATTGAATCTGTGAG-CCTCAAGATCATAGCT-GAGAGCT
1 CTAACTATTTTTGGGGGCTGT--GGTATTGAACCTGTGAGCCCT-AAGATCACAGCTAG-GAGCC
*
50634876 TTAGCTCTCGT
62 TTAGCTCT-TT
* ** ** * *
50634887 -TAACTATTTTTGGGGGCTGTGGTATTAAACCTGTGAGCCCTAAGATCGTATTTGGGAACCTTAG
1 CTAACTATTTTTGGGGGCTGTGGTATTGAACCTGTGAGCCCTAAGATCACAGCTAGGAGCCTTAG
50634951 CTC--T
66 CTCTTT
* ** * * * * * *
50634955 CTAACTATTGTT--GGGCTACGGTATTAAACTTGTGAGCTCTAAGATCATAACTAGGAGGAGTCT
1 CTAACTATTTTTGGGGGCTGTGGTATTGAACCTGTGAGCCCTAAGATCACAGCT---AGGAGCCT
50635018 TAGCTCTTT
63 TAGCTCTTT
50635027 CTAACTATTTTT
1 CTAACTATTTTT
50635039 TGAGGGGAGG
Statistics
Matches: 294, Mismatches: 55, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
67 33 0.11
68 1 0.00
69 10 0.03
70 21 0.07
71 159 0.54
72 67 0.23
73 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (71 bp):
CTAACTATTTTTGGGGGCTGTGGTATTGAACCTGTGAGCCCTAAGATCACAGCTAGGAGCCTTAG
CTCTTT
Found at i:50634880 original size:72 final size:72
Alignment explanation
Indices: 50634695--50634897 Score: 204
Period size: 72 Copynumber: 2.8 Consensus size: 72
50634685 GGGGCTATGG
* * * *
50634695 TATTGAACCTGCT-AGCCATAAGATCACAGCT-AGGAGCCTTAGCTCTCGCTAACTA-TTTTTAG
1 TATTGAACTTG-TGAGCCCTAAGATCACAGCTGA-GAGCCTTAGCTCTCTCTAACTATTTTTTAA
** *
50634757 GGGTTGTAG
64 GGGTTACAA
*
50634766 TATTGAACTTGTGAGCCCTAAGATCACAGCTTG-GAGCCTTAGCTCTTTCTAACTATTTTTTAAG
1 TATTGAACTTGTGAGCCCTAAGATCACAGC-TGAGAGCCTTAGCTCTCTCTAACTATTTTTTAAG
*
50634830 GTTTACAA
65 GGTTACAA
* *
50634838 TATTGAA-TCTGTGAG-CCTCAAGATCATAGCTGAGAGCTTTAGCTCTCGT-TAACTATTTTT
1 TATTGAACT-TGTGAGCCCT-AAGATCACAGCTGAGAGCCTTAGCTCTC-TCTAACTATTTTT
50634898 GGGGGCTGTG
Statistics
Matches: 112, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
70 1 0.01
71 52 0.46
72 58 0.52
73 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (72 bp):
TATTGAACTTGTGAGCCCTAAGATCACAGCTGAGAGCCTTAGCTCTCTCTAACTATTTTTTAAGG
GTTACAA
Found at i:50638763 original size:16 final size:16
Alignment explanation
Indices: 50638742--50638779 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
50638732 GCAAGAATCA
*
50638742 CATGTGCGAACTAGTT
1 CATGTGCGAACTAGCT
50638758 CATGTGCGAACTAGCT
1 CATGTGCGAACTAGCT
50638774 CATGTG
1 CATGTG
50638780 AATCTTTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (16 bp):
CATGTGCGAACTAGCT
Found at i:50643495 original size:421 final size:421
Alignment explanation
Indices: 50642711--50643556 Score: 1692
Period size: 421 Copynumber: 2.0 Consensus size: 421
50642701 CTTGATGATT
50642711 TTGTTCATTCATGATATATTGAAAAATGTTATGGAAGAAAAATGTGTATGAATCTTGCTTGATGA
1 TTGTTCATTCATGATATATTGAAAAATGTTATGGAAGAAAAATGTGTATGAATCTTGCTTGATGA
50642776 CTACATACATTCGTGAATTTAAACTATTATATGGATTATAGTGACTAACATGGTTAATGAGGATA
66 CTACATACATTCGTGAATTTAAACTATTATATGGATTATAGTGACTAACATGGTTAATGAGGATA
50642841 TGTGTTTAGGCACTTGGCCAACACAACATGGGAGTGAAATGCATGTTTACCTTATGTTTATAAAA
131 TGTGTTTAGGCACTTGGCCAACACAACATGGGAGTGAAATGCATGTTTACCTTATGTTTATAAAA
50642906 TAGTGGTAAGTTAAATTCTTGGTTATACAAACTTACTAAGCTTAAAAGCTTACACTGTTTTTAAT
196 TAGTGGTAAGTTAAATTCTTGGTTATACAAACTTACTAAGCTTAAAAGCTTACACTGTTTTTAAT
50642971 TTCCCTTCTTTAAAGGAATTCAGAAGCTCATTGGGTTGGAAGCTTGGCAGAGATATTTCACAATA
261 TTCCCTTCTTTAAAGGAATTCAGAAGCTCATTGGGTTGGAAGCTTGGCAGAGATATTTCACAATA
50643036 TCCATTGGCCCATTTTGTGGAAATGGTAAAAATTAATTCTGGTTATAATGGCATGTATAGGTTAG
326 TCCATTGGCCCATTTTGTGGAAATGGTAAAAATTAATTCTGGTTATAATGGCATGTATAGGTTAG
50643101 TTTGGCCAATGATGGCATGATAATGCTTTGG
391 TTTGGCCAATGATGGCATGATAATGCTTTGG
50643132 TTGTTCATTCATGATATATTGAAAAATGTTATGGAAGAAAAATGTGTATGAATCTTGCTTGATGA
1 TTGTTCATTCATGATATATTGAAAAATGTTATGGAAGAAAAATGTGTATGAATCTTGCTTGATGA
50643197 CTACATACATTCGTGAATTTAAACTATTATATGGATTATAGTGACTAACATGGTTAATGAGGATA
66 CTACATACATTCGTGAATTTAAACTATTATATGGATTATAGTGACTAACATGGTTAATGAGGATA
50643262 TGTGTTTAGGCACTTGGCCAACACAACATGGGAGTGAAATGCATGTTTACCTTATGTTTATAAAA
131 TGTGTTTAGGCACTTGGCCAACACAACATGGGAGTGAAATGCATGTTTACCTTATGTTTATAAAA
50643327 TAGTGGTAAGTTAAATTCTTGGTTATACAAACTTACTAAGCTTAAAAGCTTACACTGTTTTTAAT
196 TAGTGGTAAGTTAAATTCTTGGTTATACAAACTTACTAAGCTTAAAAGCTTACACTGTTTTTAAT
50643392 TTCCCTTCTTTAAAGGAATTCAGAAGCTCATTGGGTTGGAAGCTTGGCAGAGATATTTCACAATA
261 TTCCCTTCTTTAAAGGAATTCAGAAGCTCATTGGGTTGGAAGCTTGGCAGAGATATTTCACAATA
50643457 TCCATTGGCCCATTTTGTGGAAATGGTAAAAATTAATTCTGGTTATAATGGCATGTATAGGTTAG
326 TCCATTGGCCCATTTTGTGGAAATGGTAAAAATTAATTCTGGTTATAATGGCATGTATAGGTTAG
50643522 TTTGGCCAATGATGGCATGATAATGCTTTGG
391 TTTGGCCAATGATGGCATGATAATGCTTTGG
50643553 TTGT
1 TTGT
50643557 AACTAGCCAT
Statistics
Matches: 425, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
421 425 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (421 bp):
TTGTTCATTCATGATATATTGAAAAATGTTATGGAAGAAAAATGTGTATGAATCTTGCTTGATGA
CTACATACATTCGTGAATTTAAACTATTATATGGATTATAGTGACTAACATGGTTAATGAGGATA
TGTGTTTAGGCACTTGGCCAACACAACATGGGAGTGAAATGCATGTTTACCTTATGTTTATAAAA
TAGTGGTAAGTTAAATTCTTGGTTATACAAACTTACTAAGCTTAAAAGCTTACACTGTTTTTAAT
TTCCCTTCTTTAAAGGAATTCAGAAGCTCATTGGGTTGGAAGCTTGGCAGAGATATTTCACAATA
TCCATTGGCCCATTTTGTGGAAATGGTAAAAATTAATTCTGGTTATAATGGCATGTATAGGTTAG
TTTGGCCAATGATGGCATGATAATGCTTTGG
Found at i:50649589 original size:14 final size:14
Alignment explanation
Indices: 50649570--50649597 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50649560 CCCATCTTCA
50649570 AATATTTTACACAC
1 AATATTTTACACAC
50649584 AATATTTTACACAC
1 AATATTTTACACAC
50649598 TATGGCTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
AATATTTTACACAC
Found at i:50651775 original size:15 final size:15
Alignment explanation
Indices: 50651755--50651801 Score: 85
Period size: 15 Copynumber: 3.1 Consensus size: 15
50651745 ATATCCTAGC
50651755 TTATACATCCATAGG
1 TTATACATCCATAGG
*
50651770 TTATACATCCACAGG
1 TTATACATCCATAGG
50651785 TTATACATCCATAGG
1 TTATACATCCATAGG
50651800 TT
1 TT
50651802 CAAGTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (15 bp):
TTATACATCCATAGG
Found at i:50670037 original size:32 final size:32
Alignment explanation
Indices: 50670001--50670063 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
50669991 TCTTTACTTA
*
50670001 GTAAATATGTATTTTACTGATCCTTGTTTACC
1 GTAAATATGCATTTTACTGATCCTTGTTTACC
50670033 GTAAATATGCATTTTACTGATCCTTGTTTAC
1 GTAAATATGCATTTTACTGATCCTTGTTTAC
50670064 TAAGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.16, G:0.13, T:0.46
Consensus pattern (32 bp):
GTAAATATGCATTTTACTGATCCTTGTTTACC
Found at i:50673499 original size:40 final size:40
Alignment explanation
Indices: 50673405--50673549 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
50673395 TACTCGAATG
*
50673405 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
50673446 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
50673486 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
50673526 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
50673550 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:50681514 original size:40 final size:40
Alignment explanation
Indices: 50681420--50681564 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
50681410 TACTCGAATG
*
50681420 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
50681461 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
50681501 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
50681541 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
50681565 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:50737477 original size:40 final size:40
Alignment explanation
Indices: 50737429--50737613 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
50737419 CTTGCACAAG
*
50737429 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * **
50737469 GCCTTCGGGACTTAGCCTGGATATAGTTGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
50737509 GCCTTCAGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
50737549 GCCTTCGGATCTTAGTCTGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
50737590 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
50737614 CATTCGAATA
Statistics
Matches: 117, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 89 0.76
41 28 0.24
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:50737524 original size:80 final size:80
Alignment explanation
Indices: 50737393--50737613 Score: 252
Period size: 80 Copynumber: 2.8 Consensus size: 80
50737383 CTCAAGTAAT
* ** * *
50737393 CTTCGGGATTTAGCC-GGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCTGGATATAGTTACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-
*
50737456 C-ACTAGCATAAATGC
65 CAACTAGCACAAATGC
* * *
50737471 CTTCGGGACTTAGCCTGGATATAGTTGCTAGCACAAATGCCTTCAGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAGCCTGGATATAGTTACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
* *
50737536 AACTCGCACGAATGC
66 AACTAGCACAAATGC
* * * *
50737551 CTTC-GGATCTTAGTCTGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAGCCTGGATATAGTTA-CTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
50737614 CATTCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 14 0.12
79 18 0.15
80 57 0.47
81 32 0.26
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCTGGATATAGTTACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
AACTAGCACAAATGC
Found at i:50741285 original size:49 final size:50
Alignment explanation
Indices: 50741207--50741439 Score: 274
Period size: 49 Copynumber: 4.7 Consensus size: 50
50741197 ATCTATTGTG
50741207 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
50741257 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
50741307 CGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
50741357 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-CAGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATAATT
* * *
50741407 -GGTCCCATATGTAGTGCTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
50741440 TGCGTACTAG
Statistics
Matches: 154, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 73 0.47
50 44 0.29
51 37 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Done.