Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 149 of 311
Found at i:50741479 original size:150 final size:150
Alignment explanation
Indices: 50741207--50741490 Score: 380
Period size: 150 Copynumber: 1.9 Consensus size: 150
50741197 ATCTATTGTG
* * *
50741207 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCCCATATGTAGT
* * * *
50741272 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACGTGTGTAGAAATATGTGCAGGCA
50741337 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* *
50741357 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-CAGGATAATTGGTCCCATATGTAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCA-GATAATTGGTCCCATATGTAG
* * *
50741421 TGCTAAGTGCAGGCTACTATGCGTACTAGATAGCCTT-G-TCTACAAGTGTG-A-AAATATGTGC
65 TACTAAGTGCAGGCTACTATGCGTACCAGATA-ACTTCGATC-AC--GTGTGTAGAAATATGTGC
50741482 AGGCAACTA
126 AGGCAACTA
50741491 AGTATCAGTT
Statistics
Matches: 117, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
149 4 0.03
150 104 0.89
151 4 0.03
152 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (150 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCCCATATGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACGTGTGTAGAAATATGTGCAGGCA
ACTACGTGTATCAGATGGTT
Found at i:50745048 original size:19 final size:19
Alignment explanation
Indices: 50745024--50745062 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
50745014 CGGGTTACTT
50745024 AGAAAATATCTTCTCAAAA
1 AGAAAATATCTTCTCAAAA
50745043 AGAAAATATCTTCTCAAAA
1 AGAAAATATCTTCTCAAAA
50745062 A
1 A
50745063 ATATATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (19 bp):
AGAAAATATCTTCTCAAAA
Found at i:50751705 original size:27 final size:27
Alignment explanation
Indices: 50751659--50751842 Score: 197
Period size: 27 Copynumber: 6.8 Consensus size: 27
50751649 ATTATTGAAA
* * * ***
50751659 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* *
50751686 TACCCCCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50751713 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
50751740 TACCCTTGATTTATAGAATTACCGTTC
1 TACCCTCGATTTATAGAATTACCATTT
*
50751767 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
50751794 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50751821 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
50751843 TAAAATACCC
Statistics
Matches: 134, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:50751733 original size:54 final size:54
Alignment explanation
Indices: 50751659--50751907 Score: 230
Period size: 54 Copynumber: 4.6 Consensus size: 54
50751649 ATTATTGAAA
* * * * **
50751659 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAATTACCCTTGATTTATAGAATTACTATTT
* ** ** *
50751713 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATTACCGTTC
1 TACCCTCGATTTATAAAATTACTAAATTACCCTTGATTTATAGAATTACTATTT
* ** * *
50751767 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTAAATTACCCTTGATTTATAGAATTACTATTT
* * * * * * ***
50751821 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAATTACCCTTGATTTATAGAATTACTATTT
* *
50751875 TACCCTCGA-TTAGTAAAATTACCAAAATACCCT
1 TACCCTCGATTTA-TAAAATTACTAAATTACCCT
50751908 AGTCTGTAAA
Statistics
Matches: 163, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
53 3 0.02
54 160 0.98
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAATTACCCTTGATTTATAGAATTACTATTT
Found at i:50751851 original size:27 final size:27
Alignment explanation
Indices: 50751821--50752151 Score: 230
Period size: 27 Copynumber: 12.2 Consensus size: 27
50751811 ATTATTATTT
* *
50751821 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
50751848 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
50751875 TACCCTCGA-TTAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
50751902 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
50751928 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* * *
50751955 TACCC-CTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
50751982 TACCACT-GGTTTGTGAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
50752009 TACCCTCAATTTCTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
50752036 TACCACT-GATTTATAAAATTA-CAGAAA
1 TACC-CTCGATTTATAAAATTACCA-AAA
* * * *
50752063 CACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAT-AAAATTACCA-AAA
* * * * *
50752092 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
50752119 TACCCTC-AGTTTATAAATTTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
*
50752146 CACCCT
1 TACCCT
50752152 TGTAGGGTGA
Statistics
Matches: 246, Mismatches: 43, Indels: 30
0.77 0.13 0.09
Matches are distributed among these distances:
26 27 0.11
27 189 0.77
28 12 0.05
29 18 0.07
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:50751852 original size:81 final size:81
Alignment explanation
Indices: 50751659--50751853 Score: 255
Period size: 81 Copynumber: 2.4 Consensus size: 81
50751649 ATTATTGAAA
* * * *
50751659 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
*
50751724 TATAGAATTACTATTT
66 TACAGAATTACTATTT
* * **** *
50751740 TACCCTTGATTTATAGAATTACCGTTCTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
*
50751805 TACAGAATTATTATTT
66 TACAGAATTACTATTT
* *
50751821 TACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTATAAAATTACCAAAATACCCT
50751854 TGGTTTACAA
Statistics
Matches: 94, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 94 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
TACAGAATTACTATTT
Found at i:50751985 original size:54 final size:53
Alignment explanation
Indices: 50751835--50752145 Score: 268
Period size: 54 Copynumber: 5.7 Consensus size: 53
50751825 CTCGATTTAC
* * ** *
50751835 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACC-CTCGATTAGT
1 AAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCACT-GATTTGT
* * * * *
50751889 AAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGATTTGT
* *
50751942 AAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCACTGATTTGT
* * * *
50751996 GAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACCACTGATTTAT
1 AAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACCACTGATTTGT
* * * * * * **
50752050 AAAATTA-CAGAAACACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACCA-AAATACCC-T-AGTTTGT-AAAATTACCA-AAATACCACTGATTTGT
* * *
50752106 AAAATTACTAAAATACCCTCAGTTTATAAATTTACCAAAA
1 AAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAA
50752146 CACCCTTGTA
Statistics
Matches: 213, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
53 45 0.21
54 117 0.55
55 15 0.07
56 35 0.16
57 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGATTTGT
Found at i:50752214 original size:27 final size:27
Alignment explanation
Indices: 50752184--50752274 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
50752174 ACCCCTATTA
*
50752184 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* ** *
50752211 GGTAAAGTGACTATAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
50752238 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
50752265 GGTAAAATGA
1 GGTAAAATGA
50752275 TGAATATGCC
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:50752269 original size:54 final size:52
Alignment explanation
Indices: 50752147--50752270 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 52
50752137 TTACCAAAAC
50752147 ACCCTTGTAGGGTGAAATGACTAAAATACCCCTATTAGGTAAAAAGACCGTAA
1 ACCCTTGTAGGGT-AAATGACTAAAATACCCCTATTAGGTAAAAAGACCGTAA
* * **
50752200 AGCCCCTGTAGGGTAAAGTGACTATAAA-GCCCCTA-TAGGGTAAAGTGACCGTAA
1 A-CCCTTGTAGGGTAAA-TGACTA-AAATACCCCTATTA-GGTAAAAAGACCGTAA
*
50752254 TACCCTTGTATGGTAAA
1 -ACCCTTGTAGGGTAAA
50752271 ATGATGAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
53 6 0.10
54 50 0.83
55 4 0.07
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (52 bp):
ACCCTTGTAGGGTAAATGACTAAAATACCCCTATTAGGTAAAAAGACCGTAA
Found at i:50753103 original size:26 final size:26
Alignment explanation
Indices: 50753074--50753248 Score: 255
Period size: 26 Copynumber: 6.8 Consensus size: 26
50753064 GAGGAAGTGC
* *
50753074 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50753100 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50753126 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
**
50753152 AAAAGGGCTTATGCCCCAGTTTACAA
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50753178 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50753204 AAAAGGGATT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50753229 AAAAGGGCTT-TTCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
50753249 ATTAAAGAGG
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 32 0.24
26 102 0.76
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:50753152 original size:52 final size:52
Alignment explanation
Indices: 50753074--50753248 Score: 282
Period size: 52 Copynumber: 3.4 Consensus size: 52
50753064 GAGGAAGTGC
* *
50753074 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACAG
*
50753126 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACAA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACAG
* *
50753178 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGATT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACAG
*
50753229 AAAAGGGCTT-TTCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
50753249 ATTAAAGAGG
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
50 9 0.08
51 23 0.20
52 84 0.72
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACAG
Found at i:50753503 original size:31 final size:31
Alignment explanation
Indices: 50753467--50753571 Score: 183
Period size: 31 Copynumber: 3.4 Consensus size: 31
50753457 GTTTACAGTA
* *
50753467 AAGGCTTCGGCCTAGAGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
50753498 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
*
50753529 AAGGCTTCGGCCCAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
50753560 AAGGCTTCGGCC
1 AAGGCTTCGGCC
50753572 TAGTAACCGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:50755918 original size:27 final size:27
Alignment explanation
Indices: 50755886--50756037 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
50755876 AAAGTGCCCC
50755886 CGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAAAATTACTGTTTTACCCT
* * * *
50755913 CAATTTATAGAATTACTATTTTACCCT
1 CGATTTACAAAATTACTGTTTTACCCT
* *
50755940 TGATTTATAAAATTAGC-GTTTTACCCT
1 CGATTTACAAAATTA-CTGTTTTACCCT
* * *
50755967 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAAAATTACTGTTTTACCCT
* *
50755994 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAAAATTACTGTTTTACCCT
50756021 CGATTTACAAAATTACT
1 CGATTTACAAAATTACT
50756038 AAAATACCCT
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 105 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (27 bp):
CGATTTACAAAATTACTGTTTTACCCT
Found at i:50755927 original size:54 final size:54
Alignment explanation
Indices: 50755887--50756063 Score: 239
Period size: 54 Copynumber: 3.3 Consensus size: 54
50755877 AAGTGCCCCC
* **
50755887 GATTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACTATTTTACCCTT
1 GATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTAAATTACCCTT
* **
50755941 GATTTATAAAATTAGC-GTTTTACCCTCGATTTATAGAATTACTATTTTACCCTT
1 GATTTACAAAATTA-CTGTTTTACCCTCGATTTATAGAATTACTAAATTACCCTT
* * * *
50755995 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 GATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTAAATTACCCTT
*
50756049 GGTTTACAAAATTAC
1 GATTTACAAAATTAC
50756064 CAAAATACCC
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 108 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (54 bp):
GATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTAAATTACCCTT
Found at i:50756045 original size:27 final size:27
Alignment explanation
Indices: 50756015--50756262 Score: 195
Period size: 27 Copynumber: 9.2 Consensus size: 27
50756005 ATTACTGTTT
* *
50756015 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
50756042 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
50756069 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
50756096 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
50756122 TACCACT-GGTTTGTAAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* * *
50756149 TACCC-CTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
50756176 TACCACT-GGTTTGTGAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
50756203 TACCCTCAATTTCTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
50756230 TA-CCTCTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTATAAAATTACCA-AAA
50756257 TACCCT
1 TACCCT
50756263 TGACTTTCTA
Statistics
Matches: 180, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
26 28 0.16
27 148 0.82
28 4 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:50756046 original size:81 final size:81
Alignment explanation
Indices: 50755853--50756063 Score: 219
Period size: 81 Copynumber: 2.6 Consensus size: 81
50755843 ATTATTGAAA
* * * * * * *
50755853 TACCCTCGACTTGTAAAATTACCAAAGTGCCCCCGATTTACAAAATTACTGTTTTACCCTCAATT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
*
50755918 TATAGAATTACTATTT
66 TACAGAATTACTATTT
* ** * * **
50755934 TACCCTTGATTTATAAAATTAGCGT--TTTACCCTCGATTTATAGAATTACTATTTTACCCTTGA
1 TACCCTCGATTTATAAAATTA-C-TAAAATACCCTCGATTTACAAAATTACTATTTTACCCTCAA
*
50755997 TTTACAGAATTACTGTTT
64 TTTACAGAATTACTATTT
* * *
50756015 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTAC
50756064 CAAAATACCC
Statistics
Matches: 103, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 100 0.97
82 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
TACAGAATTACTATTT
Found at i:50756073 original size:54 final size:54
Alignment explanation
Indices: 50755961--50756264 Score: 199
Period size: 54 Copynumber: 5.6 Consensus size: 54
50755951 ATTAGCGTTT
* * *** * * *****
50755961 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* *
50756015 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * ** * *
50756069 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * ** *
50756122 TACCACT-GGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * ***
50756176 TACCACT-GGTTTGTGAAATTACCAAAATACCCTCAATTT-CTAAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC-AAAATTACCAAAA
*
50756230 TA-CCTCTGATTTACAAAATTA-CAGAAATACCCTTG
1 TACCCTC-GATTTATAAAATTACCA-AAATACCCTTG
50756265 ACTTTCTAAA
Statistics
Matches: 202, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
52 2 0.01
53 45 0.22
54 155 0.77
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:50756138 original size:53 final size:53
Alignment explanation
Indices: 50756029--50756262 Score: 220
Period size: 54 Copynumber: 4.4 Consensus size: 53
50756019 CTCGATTTAC
* * * ** * **
50756029 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACC-CTCGATCAGT
1 AAAATTACCAAAATACCC-TAGTCTGTAAAATTACCAAAATACCACT-GGTTTGT
* * *
50756083 AAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAAATACCACTGGTTTGT
* *
50756136 AAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATA-CCCTAGTCTGTAAAATTACCAAAATACCACTGGTTTGT
* * * * * * **
50756190 GAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACCTCTGATTTAC
1 AAAATTACCAAAATACCCT-AGTCTGTAAAATTACCAAAATACCACTGGTTTGT
50756244 AAAATTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
50756263 TGACTTTCTA
Statistics
Matches: 153, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
53 45 0.29
54 108 0.71
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAAATACCACTGGTTTGT
Found at i:50756140 original size:80 final size:80
Alignment explanation
Indices: 50756029--50756233 Score: 243
Period size: 80 Copynumber: 2.5 Consensus size: 80
50756019 CTCGATTTAC
*
50756029 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCC-TGGTTTATAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
50756093 AAATACC-CTGGTCTGT
64 AAATACCACTGGTCTGT
* * * ** *
50756109 AAAATTGCTAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAA
1 AAAATTACTAAAATACC-CTGGTTTATAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
50756174 AATACCACTGGTTTGT
65 AATACCACTGGTCTGT
* * ** *
50756190 GAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACC
1 AAAATTACTAAAATACCCT-GGTTTATAAAATTACCAAAATACC
50756234 TCTGATTTAC
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 2 0.02
80 61 0.57
81 44 0.41
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTGGTTTATAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAAA
ATACCACTGGTCTGT
Found at i:50756258 original size:81 final size:78
Alignment explanation
Indices: 50756029--50756262 Score: 242
Period size: 81 Copynumber: 2.9 Consensus size: 78
50756019 CTCGATTTAC
*
50756029 AAAATTACTAAAATACCCTTGGTTTAC-AAAATTACCAAAATACCCTCGA-TCAGTAAAATTACC
1 AAAATTACTAAAATACCC-TGGTTT-CTAAAATTACCAAAATACCCT-GATTTA-TAAAATTACC
50756092 AAAATACCCTGGTCTGT
62 AAAATACCCTGGTCTGT
* * * *
50756109 AAAATTGCTAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAGTTACCA
1 AAAATTACTAAAATACC-CTGGTTTCTAAAATTACCAAAATA-CCCTGA-TTTATAAAATTACCA
*
50756173 AAATACCACTGGTTTGT
63 AAATACC-CTGGTCTGT
* * ** *
50756190 GAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACCTCTGATTTACAAAATTA-CAG
1 AAAATTACTAAAATACCCT-GGTTTCTAAAATTACCAAAATACC-CTGATTTATAAAATTACCA-
50756254 AAATACCCT
63 AAATACCCT
50756263 TGACTTTCTA
Statistics
Matches: 129, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
79 1 0.01
80 62 0.48
81 65 0.50
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (78 bp):
AAAATTACTAAAATACCCTGGTTTCTAAAATTACCAAAATACCCTGATTTATAAAATTACCAAAA
TACCCTGGTCTGT
Found at i:50756321 original size:27 final size:28
Alignment explanation
Indices: 50756244--50756321 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 28
50756234 TCTGATTTAC
* ** *
50756244 AAAATTACAGAAATACCCTTGACTTTCTA
1 AAAATTACTGAAATACCCTTG-GGTTATA
**
50756273 AAAATTA-TAGAAATACTATTGGGTTAT-
1 AAAATTACT-GAAATACCCTTGGGTTATA
50756300 AAAATTACTGAAATACCCTTGG
1 AAAATTACTGAAATACCCTTGG
50756322 TTTGTAGATT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
27 18 0.46
28 4 0.10
29 17 0.44
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (28 bp):
AAAATTACTGAAATACCCTTGGGTTATA
Found at i:50756399 original size:27 final size:27
Alignment explanation
Indices: 50756378--50756437 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
50756368 ACCCCTATTA
50756378 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
**
50756405 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
50756432 GGTAAA
1 GGTAAA
50756438 GTGACCATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.20, G:0.28, T:0.17
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:50756438 original size:27 final size:27
Alignment explanation
Indices: 50756386--50756469 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
50756376 TAGGTAAAAA
50756386 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
50756413 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* * * *
50756440 GACCATAATA-CCCTTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
50756467 GAC
1 GAC
50756470 GAATATGCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:50757225 original size:16 final size:16
Alignment explanation
Indices: 50757204--50757234 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50757194 CAAATATGGG
*
50757204 CATGACATTTTGCATA
1 CATGACATGTTGCATA
50757220 CATGACATGTTGCAT
1 CATGACATGTTGCAT
50757235 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:50757297 original size:26 final size:26
Alignment explanation
Indices: 50757268--50757442 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
50757258 GAGGAAGTGC
50757268 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
50757294 AAAAGGGCTTATGCCTCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
50757320 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
50757346 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
50757372 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
50757398 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
50757423 AAAAGGGCTT-TCCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
50757443 ATTAAAGAGG
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 33 0.24
26 104 0.76
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:50757696 original size:31 final size:31
Alignment explanation
Indices: 50757661--50757769 Score: 182
Period size: 31 Copynumber: 3.5 Consensus size: 31
50757651 GTTTACGGTA
* *
50757661 AAGGCTTCGGCCCAGAGATATGATTTATGAT
1 AAGGCTTCGGCCTAGTGATATGATTTATGAT
50757692 AAGGCTTCGGCCTAGTGATATGATTTATGAT
1 AAGGCTTCGGCCTAGTGATATGATTTATGAT
* *
50757723 AAGGTTTCGGCCTAGTGATATGATTTATGAA
1 AAGGCTTCGGCCTAGTGATATGATTTATGAT
50757754 AAGGCTTCGGCCTAGT
1 AAGGCTTCGGCCTAGT
50757770 AACCGTCAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (31 bp):
AAGGCTTCGGCCTAGTGATATGATTTATGAT
Found at i:50758681 original size:43 final size:42
Alignment explanation
Indices: 50758641--50758748 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 42
50758631 CGCATCCATT
50758641 ATGAACTC-GAACCACTCAACGAGCTCGGATGCTCACATCCACA
1 ATGAACTCAG-ACCACTCAACGAGCTCGGATGC-CACATCCACA
* * **
50758684 ATGAACTCAGACCACTCCAGGAGCTCGGATGCCACATATATC-
1 ATGAACTCAGACCACTCAACGAGCTCGGATGCCACATCCA-CA
* *
50758726 ACGAACCCAGACCACTCAACGAG
1 ATGAACTCAGACCACTCAACGAG
50758749 TCCAGACTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 25 0.45
43 29 0.53
44 1 0.02
ACGTcount: A:0.33, C:0.34, G:0.18, T:0.15
Consensus pattern (42 bp):
ATGAACTCAGACCACTCAACGAGCTCGGATGCCACATCCACA
Found at i:50758738 original size:42 final size:43
Alignment explanation
Indices: 50758651--50758748 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
50758641 ATGAACTCGA
* * *
50758651 ACCACTCAACGAGCTCGGATGCTCACATCCACAATGAACTCAG
1 ACCACTCAACGAGCTCGGATGCTCACATACACAACGAACCCAG
* * *
50758694 ACCACTCCAGGAGCTCGGATGC-CACATATATC-ACGAACCCAG
1 ACCACTCAACGAGCTCGGATGCTCACATACA-CAACGAACCCAG
50758736 ACCACTCAACGAG
1 ACCACTCAACGAG
50758749 TCCAGACTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.33, C:0.36, G:0.17, T:0.14
Consensus pattern (43 bp):
ACCACTCAACGAGCTCGGATGCTCACATACACAACGAACCCAG
Found at i:50764402 original size:659 final size:660
Alignment explanation
Indices: 50763143--50764430 Score: 2350
Period size: 659 Copynumber: 2.0 Consensus size: 660
50763133 ATGAAACATC
50763143 ATTTGCATTTAATATCTTTCTACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
1 ATTTGCATTTAATATCTTTCTACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
50763208 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
66 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
50763273 CATTCACTTAAGATTCACCCGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
131 CATTCACTTAAGATTCACCCGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
* *
50763338 GTAAGTGGCATACCCGCAGCTAGACAAACTCAATAGCCTGCGGAGCTTATGTAGCCAAGCTACCA
196 GTAAGTGGCATACCCGCAGCTAAACAAACTCAATAGCCTGCGGAACTTATGTAGCCAAGCTACCA
* * **
50763403 TGTAACCCGCCCATAAGTGAACTCGGACTCAACATAATGACATCGGGTGTTCGCATCCATAAGTG
261 TGTAACCCGCCCATAAGTGAACTCAGACTCAACATAACGACATCGGACGTTCGCATCCATAAGTG
* * *
50763468 AACTTGGACTCAACTCAACGAGTTCGGATGCCAAGTTATATCTCACGAACTCGGACTCAACTCAA
326 AACTCGGACTCAACTCAACGAGTTCAGATGCCAAGTTACATCTCACGAACTCGGACTCAACTCAA
*
50763533 CGAGTTCGGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTTCAAAGGTTCAA
391 CGAGTTCGGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCAAAGGTTCAA
* *
50763598 ACTGGCTTTTTCCTCGATCTCACATCTTTGCCATCTTCCATGGAATATCAGAACCGATACTCGGT
456 ACTGGCTTTTTCCTCAATCTCACATCTTTGCCATCTTCCACGGAATATCAGAACCGATACTCGGT
50763663 GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
521 GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
* *
50763728 ACATTTCATGATAATAATAAGCATCGTATCATATAAACATCATTTTCATAAACAACACCAAGACA
586 ACATTTCATGATAATAATAAGCATCATATCATATAAACAACATTTTCATAAACAACACCAAGACA
50763793 TTCATGTTTA
651 TTCATGTTTA
50763803 ATTTGCATTTAATATCTTTCTACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
1 ATTTGCATTTAATATCTTTCTACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
50763868 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
66 TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
*
50763933 CATTCAGTTAAGATTCACCCGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
131 CATTCACTTAAGATTCACCCGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
50763998 GTAAGTGGCATACCCGCAGCTAAACAAACTCAATAGCCTGCGGAACTTATGTAGCCAAGCTACCA
196 GTAAGTGGCATACCCGCAGCTAAACAAACTCAATAGCCTGCGGAACTTATGTAGCCAAGCTACCA
50764063 TGTAACCCG-CCATAAGTGAACTCAGACTCAAC-TCAACGAGC-TCGGACGTTCGCATCCATAAG
261 TGTAACCCGCCCATAAGTGAACTCAGACTCAACAT-AACGA-CATCGGACGTTCGCATCCATAAG
*
50764125 TGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGGACTCAACTC
324 TGAACTCGGACTCAACTCAACGAGTTCAGATGCCAAGTTACATCTCACGAACTCGGACTCAACTC
*
50764190 AACGAGTTCGGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCTAAGGTTC
389 AACGAGTTCGGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCAAAGGTTC
* *
50764255 GAAC-GAGCTTTTTCCTCAATCTCACATCTTTGCCGTCTTCCACGGAATATCAGAACCGATACTC
454 AAACTG-GCTTTTTCCTCAATCTCACATCTTTGCCATCTTCCACGGAATATCAGAACCGATACTC
50764319 GGTGATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAAC
518 GGTGATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAAC
50764384 ATAACATTTCATGATAATAATAAGCATCATATCATATAAACAACATT
583 ATAACATTTCATGATAATAATAAGCATCATATCATATAAACAACATT
50764431 AAATTGCTCA
Statistics
Matches: 606, Mismatches: 19, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
658 2 0.00
659 337 0.56
660 267 0.44
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (660 bp):
ATTTGCATTTAATATCTTTCTACGATTTCATCATACCAAGTTCTCAACCCGAGGATTTAAGCACA
TACCTGTCAAATTTTCTCATTCATCACACTTACCAATATGTCACCTTCGTTTTAGGCATTCTTCT
CATTCACTTAAGATTCACCCGTTGAACACATCGGAATATAATTCGAATACGCGGATTTCATGAAT
GTAAGTGGCATACCCGCAGCTAAACAAACTCAATAGCCTGCGGAACTTATGTAGCCAAGCTACCA
TGTAACCCGCCCATAAGTGAACTCAGACTCAACATAACGACATCGGACGTTCGCATCCATAAGTG
AACTCGGACTCAACTCAACGAGTTCAGATGCCAAGTTACATCTCACGAACTCGGACTCAACTCAA
CGAGTTCGGAACTCAAATATCCTAGTGACATGTCACTTGTATTCTAATCTATTCCAAAGGTTCAA
ACTGGCTTTTTCCTCAATCTCACATCTTTGCCATCTTCCACGGAATATCAGAACCGATACTCGGT
GATAGTTCATACTCATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATA
ACATTTCATGATAATAATAAGCATCATATCATATAAACAACATTTTCATAAACAACACCAAGACA
TTCATGTTTA
Found at i:50773186 original size:29 final size:28
Alignment explanation
Indices: 50773150--50773227 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50773140 TCATGAGATT
50773150 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
50773180 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50773207 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
50773228 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50773500 original size:173 final size:174
Alignment explanation
Indices: 50773180--50773506 Score: 557
Period size: 173 Copynumber: 1.9 Consensus size: 174
50773170 AAATTGTACA
* * *
50773180 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
* *
50773245 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
50773310 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
50773354 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCATGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
*
50773419 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
50773483 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50773507 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 63 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50779831 original size:16 final size:16
Alignment explanation
Indices: 50779807--50779837 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50779797 TGGTTCACTG
50779807 TAATAGAATAGAGCTA
1 TAATAGAATAGAGCTA
*
50779823 TAATTGAATAGAGCT
1 TAATAGAATAGAGCT
50779838 GTAACAAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (16 bp):
TAATAGAATAGAGCTA
Found at i:50786176 original size:46 final size:46
Alignment explanation
Indices: 50786126--50786298 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
50786116 TGGTTGAGCA
50786126 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
50786172 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
50786217 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
50786265 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50786299 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 58 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50786282 original size:93 final size:93
Alignment explanation
Indices: 50786123--50786293 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
50786113 GGATGGTTGA
*
50786123 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
50786188 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
50786216 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-CGAACTCGTTGAG
*
50786280 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
50786294 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:50786559 original size:19 final size:20
Alignment explanation
Indices: 50786522--50786559 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50786512 ATAAGGTGGT
50786522 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
50786542 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
50786560 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:50788184 original size:42 final size:43
Alignment explanation
Indices: 50788079--50788222 Score: 170
Period size: 44 Copynumber: 3.3 Consensus size: 43
50788069 TATGTGTTAT
* *
50788079 CATGTAAGACCACGTCTGGGACATCGGCATCG-ACTTATGATTTA
1 CATGTAAGACCACGTTTGGGACATTGGCATCGTA-TT-TGATTTA
50788123 CATGTAAGACCACGTTTGGGACATTGGCATCGTATTTGATTTA
1 CATGTAAGACCACGTTTGGGACATTGGCATCGTATTTGATTTA
* * * *
50788166 -GTGTAAGACC-CTTTTTGGGACAGTGGCATCAATATTTGA-TTA
1 CATGTAAGACCAC-GTTTGGGACATTGGCATC-GTATTTGATTTA
50788208 CATGTAAGACCACGT
1 CATGTAAGACCACGT
50788223 CTAGGACGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 28 0.32
43 24 0.28
44 33 0.38
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTTTGGGACATTGGCATCGTATTTGATTTA
Found at i:50788216 original size:43 final size:43
Alignment explanation
Indices: 50788079--50788222 Score: 154
Period size: 42 Copynumber: 3.3 Consensus size: 43
50788069 TATGTGTTAT
* *
50788079 CATGTAAGACCACGTCTGGGACA-TCGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTTTGGGACAGT-GGCATC-A-TATTTGATTTA
* *
50788123 CATGTAAGACCACGTTTGGGACATTGGCATCGTATTTGATTTA
1 CATGTAAGACCACGTTTGGGACAGTGGCATCATATTTGATTTA
* *
50788166 -GTGTAAGACC-CTTTTTGGGACAGTGGCATCAATATTTGA-TTA
1 CATGTAAGACCAC-GTTTGGGACAGTGGCATC-ATATTTGATTTA
50788208 CATGTAAGACCACGT
1 CATGTAAGACCACGT
50788223 CTAGGACGTT
Statistics
Matches: 85, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.34
43 25 0.29
44 29 0.34
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTTTGGGACAGTGGCATCATATTTGATTTA
Found at i:50792511 original size:43 final size:43
Alignment explanation
Indices: 50792391--50792528 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 43
50792381 TGTGTTATCA
* * * * *
50792391 TGTAAGACCATGTCCGGGATGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCCTGTCTGGGACGCTGGCATCGA-TATTTGATTT-CG
* *
50792435 TGTAAGACCAC-ATCTAGGACGCTGGCATC-ATATTTGATTTCG
1 TGTAAGACC-CTGTCTGGGACGCTGGCATCGATATTTGATTTCG
* *
50792477 TGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGAC-GCTGGCATCGATATTTGATTTCG
50792520 TGTAAGACC
1 TGTAAGACC
50792529 ACATCTGGGA
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.33
43 29 0.37
44 22 0.28
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACGCTGGCATCGATATTTGATTTCG
Found at i:50792536 original size:43 final size:43
Alignment explanation
Indices: 50792413--50792539 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
50792403 TCCGGGATGT
* *
50792413 TGGCATCGACT-TATGATTTACGTGTAAGACCACATCTAGGACGC
1 TGGCATCGA-TATTTGA-TTACGTGTAAGACCACATCTGGGACGC
* *
50792457 TGGCATC-ATATTTGATTTCGTGTAAGACC-CTGTCTGGGACAG-
1 TGGCATCGATATTTGATTACGTGTAAGACCAC-ATCTGGGAC-GC
*
50792499 TGGCATCGATATTTGATTACATGTAAGACCACATCTGGGAC
1 TGGCATCGATATTTGATTACGTGTAAGACCACATCTGGGAC
50792540 TTGGCATTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.39
43 34 0.48
44 8 0.11
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
TGGCATCGATATTTGATTACGTGTAAGACCACATCTGGGACGC
Found at i:50792545 original size:42 final size:43
Alignment explanation
Indices: 50792389--50792546 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 43
50792379 TATGTGTTAT
** * ** *
50792389 CATGTAAGACCATGTCCGGGATGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACATCTGGGACATTGGCATCGA-TATTTGA-TTA
* * ** *
50792433 CGTGTAAGACCACATCTAGGACGCTGGCATC-ATATTTGATTT
1 CATGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTA
* * *
50792475 CGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCAC-ATCTGGGACATTGGCATCGATATTTGATTA
50792518 CATGTAAGACCACATCTGGGAC-TTGGCAT
1 CATGTAAGACCACATCTGGGACATTGGCAT
50792547 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 34 0.37
43 33 0.35
44 25 0.27
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTA
Found at i:50809868 original size:39 final size:39
Alignment explanation
Indices: 50809819--50809961 Score: 130
Period size: 39 Copynumber: 3.7 Consensus size: 39
50809809 TAAACCCGGT
* *
50809819 ATAATACCAGCTCGAAGCCTGCGGGACATT-AGTCCAGAC
1 ATAATTCCAGCACGAAGCCTGC-GGACATTAAGTCCAGAC
* * * * *
50809858 ATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGAT
1 ATAATTCCAGCACGAAGCCTGCGGACATTAAGTCCAGAC
* ** * *
50809897 ATAATTCCAGCAC-ATAGCCTGCAGACCCTAAGTCCGGAT
1 ATAATTCCAGCACGA-AGCCTGCGGACATTAAGTCCAGAC
50809936 ATAATTCCAGCAC-ATAGCCTGCGGAC
1 ATAATTCCAGCACGA-AGCCTGCGGAC
50809962 CCTAAGTTCG
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
38 6 0.07
39 84 0.93
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (39 bp):
ATAATTCCAGCACGAAGCCTGCGGACATTAAGTCCAGAC
Found at i:50809900 original size:78 final size:78
Alignment explanation
Indices: 50809814--50809977 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
50809804 GAATTTAAAC
* * * * *
50809814 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CATTAGTCCAGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-AGACCATAAGTCCAGACATAATTCCAGCACATAGC
*
50809876 CTGCGGACCTTAAGT
64 CTGCGGACCCTAAGT
* * * *
50809891 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTGCAGACCATAAGTCCAGACATAATTCCAGCACATAGCCT
50809956 GCGGACCCTAAGT
66 GCGGACCCTAAGT
* *
50809969 TCGAATATA
1 CCGGATATA
50809978 CATCACTGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
77 7 0.10
78 65 0.90
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCAGACCATAAGTCCAGACATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:50809963 original size:39 final size:39
Alignment explanation
Indices: 50809862--50809977 Score: 187
Period size: 39 Copynumber: 3.0 Consensus size: 39
50809852 CCAGACATAT
* *
50809862 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
50809901 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* *
50809940 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGAATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
50809978 CATCACTGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:50818045 original size:57 final size:58
Alignment explanation
Indices: 50817908--50818046 Score: 165
Period size: 57 Copynumber: 2.4 Consensus size: 58
50817898 CATTACAGAA
* * *
50817908 AGGATTTAGCCTGGACTGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTATAGAT
1 AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAGAAAT
** * * *
50817966 AGGATTTAGCCCAGACGGGTAATCCTGAT-TAAGCTCT-TATGAGCATATGTTGGAAAT
1 AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCT-TGAGCATATGTTAGAAAT
* *
50818023 AGGATTTAGCTTGGACAAGTAATC
1 AGGATTTAGCCTGGACAGGTAATC
50818047 TTGTTGTATG
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
56 1 0.01
57 41 0.60
58 26 0.38
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (58 bp):
AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAGAAAT
Found at i:50819803 original size:44 final size:43
Alignment explanation
Indices: 50819730--50819827 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 43
50819720 ACATAAGATT
* * * * *
50819730 TCGATGTGTGATTTCGTGTAAGACCATGTCTTGGG-CGTCGGCA
1 TCGATTTGAGATTTCGTCTAAGACCATGTC-TGGGACATCGACA
*
50819773 TCGATTTGAGATTTACGTCTAAGACTATGTCTGGGACATCGACA
1 TCGATTTGAGATTT-CGTCTAAGACCATGTCTGGGACATCGACA
50819817 TCGTATTTGAG
1 TCG-ATTTGAG
50819828 TTCGTGTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 16 0.35
44 23 0.50
45 7 0.15
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (43 bp):
TCGATTTGAGATTTCGTCTAAGACCATGTCTGGGACATCGACA
Found at i:50828602 original size:40 final size:40
Alignment explanation
Indices: 50828547--50828770 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
50828537 TATTCGGATG
50828547 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50828587 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
50828630 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
50828670 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
50828710 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50828750 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50828771 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50828690 original size:83 final size:80
Alignment explanation
Indices: 50828551--50828770 Score: 309
Period size: 83 Copynumber: 2.7 Consensus size: 80
50828541 CGGATGATAT
* **
50828551 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
50828616 TGCTAGTAGTTGCTATAC
66 TGCTAGT-G--ACTATAC
*
50828634 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
50828699 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
50828714 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
50828771 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
79 14 0.11
80 42 0.33
81 2 0.02
82 1 0.01
83 68 0.54
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:50840230 original size:40 final size:40
Alignment explanation
Indices: 50840173--50840362 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
50840163 ATTTGAATAC
* * * *
50840173 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGA-TAT
*
50840213 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
*
50840253 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * * *
50840293 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * *
50840333 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
50840363 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
Found at i:50840306 original size:80 final size:80
Alignment explanation
Indices: 50840173--50840382 Score: 280
Period size: 80 Copynumber: 2.6 Consensus size: 80
50840163 ATTTGAATAC
* * * *
50840173 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
*
50840238 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
50840253 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGA-TATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCAT
* *
50840317 TCGTGCGAGTTGCTAT
65 TCGTGCAAGTTGATAT
* * * ** *
50840333 ACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
50840383 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 8 0.07
80 104 0.90
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:50848711 original size:40 final size:40
Alignment explanation
Indices: 50848654--50848883 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
50848644 ATTTGAATAC
* * * *
50848654 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
50848694 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
50848734 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
50848774 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
50848814 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
50848854 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
50848884 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:50850388 original size:40 final size:40
Alignment explanation
Indices: 50850333--50850556 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
50850323 TATTCGGATG
*
50850333 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
50850373 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
50850416 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
50850456 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
50850496 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50850536 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50850557 ATACTTGGGT
Statistics
Matches: 168, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.08
40 118 0.70
41 1 0.01
43 36 0.21
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50850429 original size:83 final size:80
Alignment explanation
Indices: 50850337--50850556 Score: 309
Period size: 83 Copynumber: 2.7 Consensus size: 80
50850327 CGGATGATAT
* *
50850337 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
50850402 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
50850420 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
50850485 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
50850500 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAG
50850557 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 16 0.13
80 46 0.37
83 64 0.51
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCTAGTGACTATAC
Found at i:50852137 original size:17 final size:19
Alignment explanation
Indices: 50852115--50852155 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
50852105 TATGTTTTGT
50852115 ATTTGAAT-TTTT-GATGA
1 ATTTGAATATTTTGGATGA
*
50852132 ATTTGAATATTTTGGATTA
1 ATTTGAATATTTTGGATGA
50852151 ATTTG
1 ATTTG
50852156 TGAAAATGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (19 bp):
ATTTGAATATTTTGGATGA
Found at i:50852803 original size:42 final size:43
Alignment explanation
Indices: 50852713--50852804 Score: 98
Period size: 42 Copynumber: 2.1 Consensus size: 43
50852703 TCTAAGACGT
* * * *
50852713 TGGCATCGATTTGAGATTTATGTGTAAGACCATGTTTGGGACAT
1 TGGCATCGATTT-AGATTTATGTGTAAGACCATATATGAGACAA
* *
50852757 TGGCATCGTATTT-GATTTA-GTGTAAGACCCTATATGAGATAA
1 TGGCATCG-ATTTAGATTTATGTGTAAGACCATATATGAGACAA
50852799 TGGCAT
1 TGGCAT
50852805 TGATAACTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
42 23 0.56
43 6 0.15
44 8 0.20
45 4 0.10
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (43 bp):
TGGCATCGATTTAGATTTATGTGTAAGACCATATATGAGACAA
Found at i:50854865 original size:48 final size:49
Alignment explanation
Indices: 50854783--50854905 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 49
50854773 CATATCAATT
*
50854783 CCATATCCCAGATATGGTCTTACA-TGAAATCACATACCGAGACCGACGA
1 CCATATCCCAGATATGGTCTTACACTGAAATCACATACCAAGACCGA-GA
* * * *
50854832 -CATATCCCAGATATGGTCTTACACTGACA-CACATATCAATACCGATA
1 CCATATCCCAGATATGGTCTTACACTGAAATCACATACCAAGACCGAGA
*
50854879 CCATGTCCCAGATATGGTCTTACACTG
1 CCATATCCCAGATATGGTCTTACACTG
50854906 GCTATCATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
47 1 0.02
48 61 0.92
49 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (49 bp):
CCATATCCCAGATATGGTCTTACACTGAAATCACATACCAAGACCGAGA
Found at i:50854915 original size:48 final size:48
Alignment explanation
Indices: 50854836--50854961 Score: 146
Period size: 48 Copynumber: 2.6 Consensus size: 48
50854826 CGACGACATA
* * * *
50854836 TCCCAGATATGGTCTTACACTGAC-ACACATATCAATACCGATACCATG
1 TCCCAGATATGGTCTTACACTGGCTA-TCATATCAACACCAATACCATG
* *
50854884 TCCCAGATATGGTCTTACACTGGCTATCATATCAACGCCAATGCCATG
1 TCCCAGATATGGTCTTACACTGGCTATCATATCAACACCAATACCATG
** * *
50854932 TCTTAGACATGGTCTTACACTGGCTCTCAT
1 TCCCAGATATGGTCTTACACTGGCTATCAT
50854962 TAATCATGGT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
48 66 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (48 bp):
TCCCAGATATGGTCTTACACTGGCTATCATATCAACACCAATACCATG
Found at i:50865455 original size:41 final size:41
Alignment explanation
Indices: 50865410--50865491 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
50865400 TCTTACACTA
50865410 GCTATCATATCAATGCCGATGCCATGTCCCAGACATGGTCT
1 GCTATCATATCAATGCCGATGCCATGTCCCAGACATGGTCT
* *
50865451 GCTATCATATCAATTCCGATGCCATGTCTCAGACATGGTCT
1 GCTATCATATCAATGCCGATGCCATGTCCCAGACATGGTCT
50865492 TACACTGGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (41 bp):
GCTATCATATCAATGCCGATGCCATGTCCCAGACATGGTCT
Found at i:50882511 original size:46 final size:46
Alignment explanation
Indices: 50882458--50882624 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 46
50882448 ATTGTGGGCT
*
50882458 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGAGCC
* *
50882504 AGTGTAAGACCATGTCTGGGACATGGCATCA---ATATTGA-GACGAGTGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCATATT-ATGA-GA--GCC
*
50882552 AGTGTAAGACATGTCTAGGACATGCATCAGCC-TCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCAT--ATTATG-AGAGCC
*
50882598 AGTGTAAGACATGTCAAGGACATGCAT
1 AGTGTAAGACATGTCTAGGACATGCAT
50882625 TGGCTGTAAG
Statistics
Matches: 103, Mismatches: 5, Indels: 26
0.77 0.04 0.19
Matches are distributed among these distances:
45 7 0.07
46 46 0.45
47 27 0.26
48 20 0.19
49 1 0.01
50 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGAGCC
Found at i:50882559 original size:48 final size:44
Alignment explanation
Indices: 50882455--50882580 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 44
50882445 GTTATTGTGG
50882455 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCA--CATATTATGAGA
*
50882501 GCCAGTGTAAGACCATGTCTGGGACATGGCATCA-ATATTGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCACATATT-ATGA-GA
*
50882547 GTGCTAGTGTAAGACATGTCTAGGACATGCATCA
1 --GCTAGTGTAAGACATGTCTGGGACATGCATCA
50882581 GCCTCGAGAT
Statistics
Matches: 71, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
45 7 0.10
46 20 0.28
47 27 0.38
48 17 0.24
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCACATATTATGAGA
Found at i:50897749 original size:27 final size:27
Alignment explanation
Indices: 50897717--50897769 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
50897707 CTATAATTAA
*
50897717 TAAAATGACTG-TTATGCCCCTATGTGG
1 TAAAATGACTGATTA-ACCCCTATGTGG
*
50897744 TAAAATGATTGATTAACCCCTATGTG
1 TAAAATGACTGATTAACCCCTATGTG
50897770 ATGTATGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (27 bp):
TAAAATGACTGATTAACCCCTATGTGG
Found at i:50899731 original size:24 final size:25
Alignment explanation
Indices: 50899704--50899750 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
50899694 GAGATATCTG
*
50899704 AAAAGCTC-TATGAGCTTCCTGAGT
1 AAAAACTCTTATGAGCTTCCTGAGT
* *
50899728 AAAAATTCTTATGAGTTTCCTGA
1 AAAAACTCTTATGAGCTTCCTGA
50899751 TTAGCTCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 6 0.32
25 13 0.68
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (25 bp):
AAAAACTCTTATGAGCTTCCTGAGT
Found at i:50919876 original size:43 final size:43
Alignment explanation
Indices: 50919828--50920135 Score: 472
Period size: 43 Copynumber: 7.2 Consensus size: 43
50919818 GCATGAAACT
* *
50919828 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTAC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
50919871 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
** *
50919914 CAATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGATTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
50919957 CGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
50920000 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCATGCTTCGTGT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
50920043 CGGTGATGTGTATTCAGGCTTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * **
50920086 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGTAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
50920129 CGGTGAT
1 CGGTGAT
50920136 TCGAGCAAGG
Statistics
Matches: 241, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 241 1.00
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:50920391 original size:29 final size:28
Alignment explanation
Indices: 50920296--50920450 Score: 98
Period size: 29 Copynumber: 5.3 Consensus size: 28
50920286 TTAGAGGCAC
50920296 TGTGTGTGCAAATTCCTTTAACCGAGCACTA
1 TGTGTGTG--AATT-CTTTAACCGAGCACTA
* ** ** *
50920327 TGTGTGCGAGA-TCAGTAATTGAGGCACTG
1 TGTGTGTGA-ATTCTTTAACCGA-GCACTA
50920356 TGTGTGTGAATTCCTTTAACCGAGCACTA
1 TGTGTGTGAATT-CTTTAACCGAGCACTA
** ** *
50920385 TGTGTGTGAGA-TCGGTAATTGAGGCACTG
1 TGTGTGTGA-ATTCTTTAACCGA-GCACTA
* * *
50920414 TGTGTGCGAGTTCTTCAACCGAGCACTA
1 TGTGTGTGAATTCTTTAACCGAGCACTA
50920442 TGTGTGTGA
1 TGTGTGTGA
50920451 GATCGGTCAG
Statistics
Matches: 91, Mismatches: 26, Indels: 17
0.68 0.19 0.13
Matches are distributed among these distances:
28 26 0.29
29 50 0.55
30 8 0.09
31 7 0.08
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (28 bp):
TGTGTGTGAATTCTTTAACCGAGCACTA
Found at i:50920467 original size:28 final size:28
Alignment explanation
Indices: 50920379--50920478 Score: 85
Period size: 28 Copynumber: 3.5 Consensus size: 28
50920369 CTTTAACCGA
* *
50920379 GCACTATGTGTGTGAGATCGGTAATTGAG
1 GCACTATGTGTGTGAGATCGGTCACTG-G
* * * * * *
50920408 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGTGAGATCGGTC-ACTGG
*
50920436 GCACTATGTGTGTGAGATCGGTCAGTGG
1 GCACTATGTGTGTGAGATCGGTCACTGG
*
50920464 GCACTAAGTGTGTGA
1 GCACTATGTGTGTGA
50920479 AATGAGATTC
Statistics
Matches: 53, Mismatches: 16, Indels: 5
0.72 0.22 0.07
Matches are distributed among these distances:
28 33 0.62
29 20 0.38
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGTGAGATCGGTCACTGG
Found at i:50920476 original size:58 final size:58
Alignment explanation
Indices: 50920289--50920457 Score: 277
Period size: 58 Copynumber: 2.9 Consensus size: 58
50920279 CGAATGATTA
* * *
50920289 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
*
50920347 GAGGCACTGTGTGTGTGAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
* *
50920405 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGTGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGT
50920458 CAGTGGGCAC
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
57 31 0.30
58 73 0.70
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
Found at i:50923487 original size:46 final size:46
Alignment explanation
Indices: 50923437--50923611 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
50923427 TGGTTGAGCA
50923437 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * *
50923483 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATG
* *
50923528 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * * *
50923576 -CCTGAGCTCATTGAGTTGAGTCTGAGTTCGCTTATG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
50923612 TGCGGGTTAC
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 7 0.06
45 6 0.06
46 57 0.52
47 29 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
Found at i:50923593 original size:93 final size:93
Alignment explanation
Indices: 50923434--50923605 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
50923424 GGATGGTTGA
* *
50923434 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTAAATGTCCGAACTCATTGAGT
50923499 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
50923527 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAATG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTAAATGTCC-GAACTCATTGAG
*
50923591 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
50923606 CTTATGTGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTAAATGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50928593 original size:52 final size:52
Alignment explanation
Indices: 50928515--50928615 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
50928505 TATTTGTACC
50928515 TTGATAATGGGTGATATGTGTACTAGTGTAAGACATGTTTGGGACATGCTGA
1 TTGATAATGGGTGATATGTGTACTAGTGTAAGACATGTTTGGGACATGCTGA
*
50928567 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC
1 TTGATAATGGGTGATATGTGTACTAGTGTAAGACATGTTTGGGACATGC
50928616 ATCAGCCACA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.35
Consensus pattern (52 bp):
TTGATAATGGGTGATATGTGTACTAGTGTAAGACATGTTTGGGACATGCTGA
Found at i:50928647 original size:46 final size:48
Alignment explanation
Indices: 50928591--50928712 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
50928581 TATGTGTGCT
50928591 AGTGTAAGACATGTTTGGGACATGCATCAGCCAC-A-ATA-TGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATTGA-AGCC
* * *
50928637 AGTGTAAGACATGTTTGGGACATGCATTAGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATTGAAGCC
*
50928685 AGTGTAATACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTTTGGGACATGCATC
50928713 GACATTGAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 32 0.47
47 1 0.01
48 33 0.49
49 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATTGAAGCC
Found at i:50928764 original size:94 final size:94
Alignment explanation
Indices: 50928591--50928788 Score: 236
Period size: 94 Copynumber: 2.1 Consensus size: 94
50928581 TATGTGTGCT
* * * *
50928591 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGACACAAGACGAGAGCCAGTGTAAGACATGTCTGGG
* * **
50928656 ACATGCATTAGCCTCGAGATATTTAAGCC
66 ACATGAATCAGCCTCGAGATATACAAGCC
* ** *
50928685 AGTGTAATACATGTTTGGGACATGCATC-GACATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGACA-CAAGACGAGAGCCAGTGTAAGACATGTCTGG
* * * *
50928749 GGCATGAATCGGCCTCGCGATATACAAGCT
65 GACATGAATCAGCCTCGAGATATACAAGCC
50928779 AGTGTAAGAC
1 AGTGTAAGAC
50928789 CTATCTTGGA
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
93 3 0.03
94 83 0.97
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGACACAAGACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGAATCAGCCTCGAGATATACAAGCC
Found at i:50939856 original size:28 final size:28
Alignment explanation
Indices: 50939823--50939900 Score: 120
Period size: 28 Copynumber: 2.8 Consensus size: 28
50939813 TTTGAATCAT
50939823 TCAATATTTCGAACACTAAGTGTCATTC
1 TCAATATTTCGAACACTAAGTGTCATTC
* *
50939851 TCAATATCTCGCACACTAAGTGTCATTC
1 TCAATATTTCGAACACTAAGTGTCATTC
* *
50939879 TCAATATTTCGTACACTGAGTG
1 TCAATATTTCGAACACTAAGTG
50939901 CCATATTTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGAACACTAAGTGTCATTC
Found at i:50942227 original size:29 final size:29
Alignment explanation
Indices: 50942188--50942266 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
50942178 CTTAATAATC
*
50942188 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
50942218 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50942247 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50942267 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50945311 original size:29 final size:29
Alignment explanation
Indices: 50945273--50945350 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
50945263 CTTAATAATC
*
50945273 AACCCGCACACTTAGTGCCATGTACTTT-A
1 AACCCGCACACTTAGTGCCATGCA-TTTCA
*
50945302 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50945331 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50945351 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 3 0.07
29 41 0.93
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50956018 original size:21 final size:19
Alignment explanation
Indices: 50955986--50956025 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
50955976 GTGATGAACA
50955986 TGAATGAATGGTATTTTAT
1 TGAATGAATGGTATTTTAT
50956005 TGAATTGATATGGTATTTTAT
1 TGAA-TGA-ATGGTATTTTAT
50956026 ATTTGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 3 0.16
21 12 0.63
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (19 bp):
TGAATGAATGGTATTTTAT
Found at i:50957780 original size:29 final size:29
Alignment explanation
Indices: 50957748--50957817 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
50957738 TGGGGCCTAG
50957748 TTCATATTCT-TATGGCCCACTAGGCCCAA
1 TTCATATT-TATATGGCCCACTAGGCCCAA
* *
50957777 TTCACATTTATATGGCCCATTAGGCCCAA
1 TTCATATTTATATGGCCCACTAGGCCCAA
*
50957806 ATCATA-TTATAT
1 TTCATATTTATAT
50957818 TCATGCTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 7 0.19
29 29 0.81
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (29 bp):
TTCATATTTATATGGCCCACTAGGCCCAA
Found at i:50957919 original size:19 final size:18
Alignment explanation
Indices: 50957886--50957922 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
50957876 TGGGCCCAAC
50957886 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
50957904 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
50957923 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:50957931 original size:19 final size:19
Alignment explanation
Indices: 50957895--50957931 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50957885 CAGCCCATCA
*
50957895 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
50957914 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
50957932 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:50961902 original size:43 final size:42
Alignment explanation
Indices: 50961837--50961992 Score: 170
Period size: 43 Copynumber: 3.6 Consensus size: 42
50961827 GCTCGTACAT
* *
50961837 TGCCAAAGTCCCAGACGTGGTCTTACATGTAATCAAATATCGA
1 TGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT-GA
* * *
50961880 TGCCACTGTCCCAGACAAGGTCTTACATGAAATCAAATATGA
1 TGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATGA
** *
50961922 TGCCAATGTTGCAGACATGGTCTTACACGTAAATCTCAAAT-TGA
1 TGCCAATGTCCCAGACATGGTCTTACATGT-AA--TCAAATATGA
* **
50961966 TGCCAACGTCCCAGATGTGGTCTTACA
1 TGCCAATGTCCCAGACATGGTCTTACA
50961993 CGAAATCACA
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 26 0.28
43 37 0.39
44 25 0.27
45 6 0.06
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
TGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATGA
Found at i:50961989 original size:86 final size:85
Alignment explanation
Indices: 50961848--50962005 Score: 196
Period size: 86 Copynumber: 1.8 Consensus size: 85
50961838 GCCAAAGTCC
* * *
50961848 CAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACATGAAAT
1 CAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAAT
50961913 CAAATATGATGCCAATGTTG
66 CAAATATGATGCCAATGTTG
***
50961933 CAGACATGGTCTTACACGTAAATCTCAAAT-T-GATGCCAAC-GTCCCAGATGTGGTCTTACACG
1 CAGACATGGTCTTACACGT-AA--TCAAATATCGATGCC-ACTGTCCCAGACAAGGTCTTACACG
*
50961995 AAATCACATAT
62 AAATCAAATAT
50962006 CGGAGTCCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 17 0.27
86 36 0.58
87 3 0.05
88 6 0.10
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (85 bp):
CAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAAT
CAAATATGATGCCAATGTTG
Found at i:50963519 original size:16 final size:16
Alignment explanation
Indices: 50963498--50963556 Score: 75
Period size: 16 Copynumber: 3.7 Consensus size: 16
50963488 TTAATCACTT
*
50963498 TAATATTAAATTAATA
1 TAATATTATATTAATA
*
50963514 TAATATT-TATTAAGA
1 TAATATTATATTAATA
*
50963529 TAAATATTATATTAATT
1 T-AATATTATATTAATA
50963546 TAATATTATAT
1 TAATATTATAT
50963557 CTTATTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 7 0.19
16 23 0.62
17 7 0.19
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TAATATTATATTAATA
Found at i:50963570 original size:21 final size:20
Alignment explanation
Indices: 50963501--50963571 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
50963491 ATCACTTTAA
* *
50963501 TATTAAATTAATATAATATT
1 TATTAAAATAATATTATATT
*
50963521 TATTAAGATAAATATTATATT
1 TATTAAAAT-AATATTATATT
*
50963542 AATT----TAATATTATATCT
1 TATTAAAATAATATTATAT-T
50963559 TATTAAAATAATA
1 TATTAAAATAATA
50963572 GAATGTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 10 0.25
17 5 0.12
20 7 0.17
21 18 0.45
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (20 bp):
TATTAAAATAATATTATATT
Found at i:50965425 original size:19 final size:19
Alignment explanation
Indices: 50965401--50965443 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
50965391 GTCGCACAAT
50965401 GTGCATACAAG-CACACGAA
1 GTGCAT-CAAGACACACGAA
**
50965420 GTGCATCTTGACACACGAA
1 GTGCATCAAGACACACGAA
50965439 GTGCA
1 GTGCA
50965444 AATCTGACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (19 bp):
GTGCATCAAGACACACGAA
Found at i:50965453 original size:20 final size:19
Alignment explanation
Indices: 50965412--50965457 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
50965402 TGCATACAAG
50965412 CACACGAAGTGCATCTTGA
1 CACACGAAGTGCATCTTGA
50965431 CACACGAAGTGCAAATC-TGA
1 CACACGAAGTGC--ATCTTGA
50965451 CACACGA
1 CACACGA
50965458 GGTGGATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.48
20 10 0.40
21 3 0.12
ACGTcount: A:0.37, C:0.28, G:0.20, T:0.15
Consensus pattern (19 bp):
CACACGAAGTGCATCTTGA
Found at i:50973303 original size:24 final size:24
Alignment explanation
Indices: 50973276--50973349 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
50973266 ATCATGCTCA
50973276 TTATACAATATATAATCACGAGTT
1 TTATACAATATATAATCACGAGTT
* * * *
50973300 TTATTACAA-GTA-AATCATG-CTCA
1 TTA-TACAATATATAATCACGAGT-T
50973323 TTATACAATATATAATCACGAGTT
1 TTATACAATATATAATCACGAGTT
50973347 TTA
1 TTA
50973350 ATAAGCTTGC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
22 6 0.16
23 11 0.30
24 14 0.38
25 6 0.16
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.38
Consensus pattern (24 bp):
TTATACAATATATAATCACGAGTT
Found at i:50973311 original size:47 final size:47
Alignment explanation
Indices: 50973255--50973349 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
50973245 TATACATTCA
50973255 ATTACAAGTAAATCATGCTCATTATACAATATATAATCACGAGTTTT
1 ATTACAAGTAAATCATGCTCATTATACAATATATAATCACGAGTTTT
50973302 ATTACAAGTAAATCATGCTCATTATACAATATATAATCACGAGTTTT
1 ATTACAAGTAAATCATGCTCATTATACAATATATAATCACGAGTTTT
50973349 A
1 A
50973350 ATAAGCTTGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (47 bp):
ATTACAAGTAAATCATGCTCATTATACAATATATAATCACGAGTTTT
Found at i:50973326 original size:23 final size:22
Alignment explanation
Indices: 50973257--50973330 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
50973247 TACATTCAAT
50973257 TACAAGTAAATCATGCTCATTA
1 TACAAGTAAATCATGCTCATTA
* * * *
50973279 TACAATATATAATCACGAGT-TTTA
1 TACAA-GTA-AATCATG-CTCATTA
50973303 TTACAAGTAAATCATGCTCATTA
1 -TACAAGTAAATCATGCTCATTA
50973326 TACAA
1 TACAA
50973331 TATATAATCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
22 11 0.28
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (22 bp):
TACAAGTAAATCATGCTCATTA
Found at i:50974786 original size:27 final size:27
Alignment explanation
Indices: 50974730--50974830 Score: 130
Period size: 27 Copynumber: 3.6 Consensus size: 27
50974720 GTATGCCGTC
*
50974730 AAGGCATTCCTTTCATTGTATATGGCCACA
1 AAGGCATTCCTTTCA---TATATTGCCACA
*
50974760 AAGGCATTCCTTTCATATATTGTCACA
1 AAGGCATTCCTTTCATATATTGCCACA
* *
50974787 AAGACATTCGTTTCATATATTGCCACA
1 AAGGCATTCCTTTCATATATTGCCACA
*
50974814 AAGGCATTCTTTTCATA
1 AAGGCATTCCTTTCATA
50974831 AGCTGTTTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
27 49 0.77
30 15 0.23
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.36
Consensus pattern (27 bp):
AAGGCATTCCTTTCATATATTGCCACA
Found at i:50976723 original size:43 final size:42
Alignment explanation
Indices: 50976652--50976824 Score: 197
Period size: 43 Copynumber: 4.1 Consensus size: 42
50976642 ACATAAAGCT
* * *
50976652 CATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA
1 CATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* * * ***
50976693 CATATCGATGCCACTGTCCCAGACAGGGTCTTACACAAAATCA
1 CATA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
*
50976736 TATAACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 CAT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
*
50976779 AACTACAATGCCAATGTCCCA-ACCATGGTCTTACATGTAATCA
1 CA-TACAATGCCAATGTCCCAGA-CATGGTCTTACATGTAATCA
50976822 CAT
1 CAT
50976825 CTCGGTAATC
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.04
42 8 0.07
43 95 0.87
44 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (42 bp):
CATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
Found at i:50980286 original size:19 final size:19
Alignment explanation
Indices: 50980262--50980301 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
50980252 AAATAAATGT
50980262 GTTAGATTAACATTTTTTG
1 GTTAGATTAACATTTTTTG
50980281 GTTAGATTAACATTTTTTG
1 GTTAGATTAACATTTTTTG
50980300 GT
1 GT
50980302 ATTGGGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.05, G:0.17, T:0.53
Consensus pattern (19 bp):
GTTAGATTAACATTTTTTG
Found at i:50982014 original size:28 final size:27
Alignment explanation
Indices: 50981951--50982102 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
50981941 ATATTAAGTC
* *
50981951 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
50981978 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
50982006 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
50982033 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
50982061 CGCACACTTAGTGCTACATAATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
50982088 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50982103 GCACAATTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50982038 original size:55 final size:55
Alignment explanation
Indices: 50981951--50982102 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
50981941 ATATTAAGTC
* * *
50981951 CGCACACTCAGTGCTATATAATCAACTTGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
50982006 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
*
50982061 CGCACACTTAGTGCTACATAATCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
50982103 GCACAATTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:50988679 original size:41 final size:42
Alignment explanation
Indices: 50988633--50988722 Score: 164
Period size: 42 Copynumber: 2.2 Consensus size: 42
50988623 TGTGAACATT
*
50988633 CCGTGTGCCTCACATGGTAA-TAGACACGCCCATGTCGTAGG
1 CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
50988674 CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
1 CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
50988716 CCGTGTG
1 CCGTGTG
50988723 AAAACAGGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 20 0.43
42 27 0.57
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (42 bp):
CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
Found at i:51002961 original size:43 final size:43
Alignment explanation
Indices: 51002849--51003014 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 43
51002839 CTATGCCGTA
* ** * * *
51002849 TCCCAGATATGGTCTTACATGTTATCACATATTGATGCCATTG
1 TCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATG
* *
51002892 TCCCAGACAGGGTCTTACATGA-AATCA-ATTATCGATGCCAATG
1 TCCCAGACATGGTCTTACA-CATAATCACA-TATCGATGCCAATG
* *
51002935 TCCCAGACATGGTCTTACACATAATCACA-ATACAATGTCAATG
1 TCCCAGACATGGTCTTACACATAATCACATAT-CGATGCCAATG
*** ** *
51002978 TTGTAGACATGGTCTTACATGTAATCACATCTCGATG
1 TCCCAGACATGGTCTTACACATAATCACATATCGATG
51003015 ATCTAATGTC
Statistics
Matches: 99, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 4 0.04
43 93 0.94
44 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATG
Found at i:51006109 original size:23 final size:23
Alignment explanation
Indices: 51006052--51006134 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
51006042 GATATATCAT
*
51006052 CTCGTA-AGAGCTTACTGTTTTTAG
1 CTCGTATAGAGCTTACTG--TTCAG
* *
51006076 CTCAT-TGGAGCTTACTGTTCAAG
1 CTCGTATAGAGCTTACTGTTC-AG
51006099 CTCGTAT-GAGCTTACTGTTCAG
1 CTCGTATAGAGCTTACTGTTCAG
51006121 CTCG-ATAGAGCTTA
1 CTCGTATAGAGCTTA
51006135 TTGATTATGG
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
21 2 0.04
22 15 0.29
23 19 0.37
24 15 0.29
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (23 bp):
CTCGTATAGAGCTTACTGTTCAG
Found at i:51010906 original size:10 final size:10
Alignment explanation
Indices: 51010891--51010919 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
51010881 TATTGGTAAG
51010891 TAAATTAAAA
1 TAAATTAAAA
51010901 TAAATTAAAA
1 TAAATTAAAA
51010911 TAAATTAAA
1 TAAATTAAA
51010920 GAAAGGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
TAAATTAAAA
Found at i:51012123 original size:29 final size:29
Alignment explanation
Indices: 51012088--51012161 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51012078 GTTGTGAGAT
* *
51012088 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51012117 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51012146 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51012162 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51016685 original size:16 final size:17
Alignment explanation
Indices: 51016664--51016710 Score: 73
Period size: 16 Copynumber: 2.9 Consensus size: 17
51016654 TTAACACCCT
51016664 AAAAATCTC-GAAATCC
1 AAAAATCTCTGAAATCC
51016680 AAAAATC-CTGAAATCC
1 AAAAATCTCTGAAATCC
51016696 AAAAAT-TCTGAAATC
1 AAAAATCTCTGAAATC
51016711 TTGAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.51, C:0.21, G:0.06, T:0.21
Consensus pattern (17 bp):
AAAAATCTCTGAAATCC
Found at i:51017839 original size:16 final size:16
Alignment explanation
Indices: 51017818--51017868 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
51017808 ATGTATCGGT
*
51017818 AAAAGCTGAAATGCCG
1 AAAAGCTGAAAAGCCG
* *
51017834 AAAAGCCGAAAAGTCG
1 AAAAGCTGAAAAGCCG
* *
51017850 AAATGCTGAAAAGTCG
1 AAAAGCTGAAAAGCCG
51017866 AAA
1 AAA
51017869 GTTTGGCTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCG
Found at i:51018176 original size:29 final size:27
Alignment explanation
Indices: 51018079--51018181 Score: 100
Period size: 29 Copynumber: 3.7 Consensus size: 27
51018069 GTGAGTATGA
51018079 ATATGAATGTGATTGGGCCAACGGGCC
1 ATATGAATGTGATTGGGCCAACGGGCC
** * *
51018106 ATACAAATGTGATTTGGGGCTAATGGGCC
1 ATATGAATGTGA-TT-GGGCCAACGGGCC
*
51018135 ATAT-ACAGGTGATTTGGGCCGAACGGGCC
1 ATATGA-ATGTGA-TTGGGCC-AACGGGCC
*
51018164 ATATGAATATGATTGGGC
1 ATATGAATGTGATTGGGC
51018182 TTAGTGGGCC
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
27 10 0.16
28 13 0.21
29 37 0.61
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (27 bp):
ATATGAATGTGATTGGGCCAACGGGCC
Found at i:51018190 original size:57 final size:56
Alignment explanation
Indices: 51018087--51018201 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 56
51018077 GAATATGAAT
* *
51018087 GTGATTGGGCCAACGGGCCATACAAATGTGATTTGGGGCTAATGGGCCATATACAG
1 GTGATTGGGCCAACGGGCCATACAAATATGATTTGGGGCTAATGGGCCAGATACAG
** *
51018143 GTGATTTGGGCCGAACGGGCCATATGAATATGA-TT-GGGCTTAGTGGGCCAGATACAG
1 GTGA-TTGGGCC-AACGGGCCATACAAATATGATTTGGGGC-TAATGGGCCAGATACAG
51018200 GT
1 GT
51018202 ATGTGAAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
56 8 0.16
57 26 0.51
58 17 0.33
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.24
Consensus pattern (56 bp):
GTGATTGGGCCAACGGGCCATACAAATATGATTTGGGGCTAATGGGCCAGATACAG
Found at i:51028209 original size:16 final size:16
Alignment explanation
Indices: 51028188--51028230 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
51028178 ATGTATTGGA
*
51028188 AAAAGTCGAAATGTCG
1 AAAAGTCGAAATGCCG
**
51028204 AAAAGTAAAAATGCCG
1 AAAAGTCGAAATGCCG
51028220 AAAAGTCGAAA
1 AAAAGTCGAAA
51028231 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.12, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:51028489 original size:29 final size:28
Alignment explanation
Indices: 51028446--51028515 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 28
51028436 CATGAAGATG
* *
51028446 AATGTGACTGGGCCTAACGGGCCATATA
1 AATGTGATTGGGCCTAACAGGCCATATA
* *
51028474 AATGTGATTTGGGCCTAATAGGCCATATG
1 AATGTGA-TTGGGCCTAACAGGCCATATA
*
51028503 AATATGATTGGGC
1 AATGTGATTGGGC
51028516 TTAGTGGGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 13 0.36
29 23 0.64
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAACAGGCCATATA
Found at i:51028525 original size:28 final size:29
Alignment explanation
Indices: 51028454--51028526 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
51028444 TGAATGTGAC
* *
51028454 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
51028483 TGGGCCTAATAGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
51028511 TGGGCTTAGTGGGCCA
1 TGGGCCTAATGGGCCA
51028527 GATACAGGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 14 0.38
29 23 0.62
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:51034448 original size:48 final size:48
Alignment explanation
Indices: 51034374--51034564 Score: 177
Period size: 48 Copynumber: 4.0 Consensus size: 48
51034364 CCACGTATCA
* * * * *
51034374 ATGCCATATCCCAAATATGGTTTTATACGAAATCTCATATCGGTGTCG
1 ATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGCCG
* * * *
51034422 ATGCCATGTCCCAAACATGGTCTTATACGAGACCTCACATCGATGCCA
1 ATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGCCG
* * * * * *
51034470 ATGCCATATCCTAGATATGGTCTTACATGGGATCTCATA-CTGATGCCG
1 ATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATC-GATGCCG
* * * * * *
51034518 ATGCCATGTCCCAGACATGGTCTTATATGGGATCTCTTATCAATGCC
1 ATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGCC
51034565 ATGTCCCAAA
Statistics
Matches: 116, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 114 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
ATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGCCG
Found at i:51034565 original size:42 final size:46
Alignment explanation
Indices: 51034422--51034586 Score: 149
Period size: 48 Copynumber: 3.6 Consensus size: 46
51034412 ATCGGTGTCG
* * * * * *
51034422 ATGCCATGTCCCAAACATGGTCTTATACGAGACCTCACATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATAT-GAT-CCA
* * * *
51034470 ATGCCATATCCTAGATATGGTCTTACATGGGATCTCATACTGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATA-TGAT-CCA
*
51034518 ATGCCATGTCCCAGACATGGTCTTATATGGGATCTC-T-T-AT-CA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATGATCCA
* *
51034560 ATGCCATGTCCCAAACATGGTTTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
51034587 CGAAATCACT
Statistics
Matches: 98, Mismatches: 18, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 25 0.26
44 2 0.02
45 1 0.01
47 1 0.01
48 68 0.69
49 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATGATCCA
Found at i:51034682 original size:186 final size:186
Alignment explanation
Indices: 51034334--51034731 Score: 410
Period size: 186 Copynumber: 2.1 Consensus size: 186
51034324 GAGTGCCAAA
*
51034334 GCCATGTCCC-GAACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAATATGGTTTT
1 GCCATGTCCCAG-ACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAACATGGTTTT
* * ** * * *
51034398 ATACGAAATCTCATATCGGTGTCGATGCCATGTCCCAAACATGGTCTTATACGAGACCTCACATC
65 ACACGAAATCACATATCGGTACCGAAGCCATATCCCAAACATGGTCTTATAAGAGA-CTCACATC
* * * * *
51034463 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCTCATACTG-ATGCCGAT
129 GATACCAATGCCATATCCCAGACATGATCTTACACGGGATCTCATACTGAATGCCGAT
* * * * *
51034520 GCCATGTCCCAGACATGGTCTTATATGGGATCTCTTATCAATGCCATGTCCCAAACATGGTTTTA
1 GCCATGTCCCAGACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAACATGGTTTTA
* * *
51034585 CACGAAATCACTTAAT-GGTACCGAAGCCATATCCCTAATATGGTCTTATATAG-GA-TCACATC
66 CACGAAATCACAT-ATCGGTACCGAAGCCATATCCCAAACATGGTCTTATA-AGAGACTCACATC
** * * * ** *
51034647 TTGATACTGATGTCATGTCCCAGACATTATCTTACACGGGATCTCATTTTGAATGTCGAT
129 --GATACCAATGCCATATCCCAGACATGATCTTACACGGGATCTCATACTGAATGCCGAT
* ** *
51034707 GTCATGTATCAAACATGGTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
51034732 CGAGATCTCA
Statistics
Matches: 172, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
184 7 0.04
186 134 0.78
187 31 0.18
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (186 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAACATGGTTTTA
CACGAAATCACATATCGGTACCGAAGCCATATCCCAAACATGGTCTTATAAGAGACTCACATCGA
TACCAATGCCATATCCCAGACATGATCTTACACGGGATCTCATACTGAATGCCGAT
Found at i:51036067 original size:26 final size:24
Alignment explanation
Indices: 51036037--51036171 Score: 95
Period size: 22 Copynumber: 5.8 Consensus size: 24
51036027 AGACTCACCA
51036037 CAGCTCGTAAGAGCTTACTGATATAT
1 CAGCTCGTAAGAGCTTACT-AT-TAT
*
51036063 CAGCTCGTAAGAGCTTACTATTTT
1 CAGCTCGTAAGAGCTTACTATTAT
* * **
51036087 CAGCTCATTAGAGCTTACCGTT-T
1 CAGCTCGTAAGAGCTTACTATTAT
* * *
51036110 TAGCTCGTACGAGTTTACTATT-T
1 CAGCTCGTAAGAGCTTACTATTAT
* *
51036133 -AGCTC-AATAGAGCTTACT-GT-T
1 CAGCTCGTA-AGAGCTTACTATTAT
51036154 CAGCTCG-ATAGAGCTTAC
1 CAGCTCGTA-AGAGCTTAC
51036172 CGTTTCAGCT
Statistics
Matches: 90, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
21 3 0.03
22 29 0.32
23 17 0.19
24 20 0.22
25 2 0.02
26 19 0.21
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTATTAT
Found at i:51036149 original size:22 final size:22
Alignment explanation
Indices: 51036072--51036195 Score: 99
Period size: 22 Copynumber: 5.5 Consensus size: 22
51036062 TCAGCTCGTA
*
51036072 AGAGCTTACTATTTTCAGCTCATT
1 AGAGCTTACTA-TTT-AGCTCAAT
*
51036096 AGAGCTTACCGT-TTTAGCTC-GT
1 AGAGCTTA-C-TATTTAGCTCAAT
*
51036118 ACGAGTTTACTATTTAGCTCAAT
1 A-GAGCTTACTATTTAGCTCAAT
* * *
51036141 AGAGCTTACTGTTCAGCTCGAT
1 AGAGCTTACTATTTAGCTCAAT
** *
51036163 AGAGCTTACCGTTTCAGCTTAAT
1 AGAGCTTACTATTT-AGCTCAAT
51036186 AGAGCTTACT
1 AGAGCTTACT
51036196 GCTCATCAGC
Statistics
Matches: 82, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
21 1 0.01
22 40 0.49
23 28 0.34
24 11 0.13
25 1 0.01
26 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (22 bp):
AGAGCTTACTATTTAGCTCAAT
Found at i:51036187 original size:45 final size:45
Alignment explanation
Indices: 51036046--51036196 Score: 144
Period size: 45 Copynumber: 3.2 Consensus size: 45
51036036 ACAGCTCGTA
* *
51036046 AGAGCTTACTGATATATCAGCTCGTAAGAGCTTACTATTTTCAGCTCATT
1 AGAGCTTACTG-T-T-TCAGCTCGT-AGAGCTTAC-AATTTCAGCTCAAT
* * * *
51036096 AGAGCTTACCGTTTTAGCTCGTACGAGTTTACTATTT-AGCTCAAT
1 AGAGCTTACTGTTTCAGCTCGTA-GAGCTTACAATTTCAGCTCAAT
** *
51036141 AGAGCTTACTG-TTCAGCTCGATAGAGCTTACCGTTTCAGCTTAAT
1 AGAGCTTACTGTTTCAGCTCG-TAGAGCTTACAATTTCAGCTCAAT
51036186 AGAGCTTACTG
1 AGAGCTTACTG
51036197 CTCATCAGCT
Statistics
Matches: 86, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
44 18 0.21
45 37 0.43
46 4 0.05
47 15 0.17
48 1 0.01
49 1 0.01
50 10 0.12
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (45 bp):
AGAGCTTACTGTTTCAGCTCGTAGAGCTTACAATTTCAGCTCAAT
Found at i:51051711 original size:20 final size:20
Alignment explanation
Indices: 51051649--51051714 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
51051639 AAAATGCCAT
51051649 ATCACATAAGACATATATAC
1 ATCACATAAGACATATATAC
*
51051669 ATCATC-TCAA-ATCA-A-A-CC
1 ATCA-CAT-AAGA-CATATATAC
51051687 ATCACATAAGACATATATAC
1 ATCACATAAGACATATATAC
51051707 ATCACATA
1 ATCACATA
51051715 TATCACTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
17 5 0.14
18 8 0.22
19 2 0.06
20 16 0.44
21 5 0.14
ACGTcount: A:0.48, C:0.24, G:0.03, T:0.24
Consensus pattern (20 bp):
ATCACATAAGACATATATAC
Found at i:51054005 original size:14 final size:14
Alignment explanation
Indices: 51053986--51054012 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51053976 TCAACAAGGT
51053986 AAATAAAAATATTA
1 AAATAAAAATATTA
51054000 AAATAAAAATATT
1 AAATAAAAATATT
51054013 TACTTCACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATAAAAATATTA
Found at i:51066638 original size:25 final size:26
Alignment explanation
Indices: 51066579--51066632 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
51066569 AAAACCAAAC
51066579 AGCAAATGACCCAGTTTTTCAGGTTT
1 AGCAAATGACCCAGTTTTTCAGGTTT
51066605 AGCAAATGACCCAGTTTTTCAGGTTT
1 AGCAAATGACCCAGTTTTTCAGGTTT
51066631 AG
1 AG
51066633 GAATGATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (26 bp):
AGCAAATGACCCAGTTTTTCAGGTTT
Found at i:51071500 original size:40 final size:39
Alignment explanation
Indices: 51071416--51071639 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 39
51071406 TTGAATGATG
* *
51071416 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-A
*
51071456 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
51071495 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* *
51071534 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AA
* *
51071574 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
* *
51071614 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51071640 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 9, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
38 10 0.06
39 52 0.31
40 94 0.56
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:51071661 original size:79 final size:79
Alignment explanation
Indices: 51071416--51071672 Score: 231
Period size: 80 Copynumber: 3.3 Consensus size: 79
51071406 TTGAATGATG
* * * * *
51071416 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-AACCGGGCTAAG-TCCCGAAGGCA
** *
51071478 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * *
51071496 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGTCCCGAAGGCATTTG
** *
51071560 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
51071574 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAGTCCCGAAGGCATTT
*
51071639 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
* *
51071654 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51071673 TACGTGATTT
Statistics
Matches: 154, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.01
78 44 0.29
79 52 0.34
80 55 0.36
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:51079461 original size:40 final size:40
Alignment explanation
Indices: 51079377--51079598 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
51079367 TTGAATGATG
* *
51079377 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
51079416 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
51079457 TCCGGGCTAAG-CCCGAAGGCA-TTGTGC--GATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
51079493 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51079533 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51079572 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51079599 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 11, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
36 19 0.12
37 10 0.06
38 12 0.07
39 10 0.06
40 97 0.60
41 12 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51079515 original size:76 final size:79
Alignment explanation
Indices: 51079377--51079598 Score: 267
Period size: 76 Copynumber: 2.8 Consensus size: 79
51079367 TTGAATGATG
* * * *
51079377 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
51079440 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* *
51079457 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGA-TACTA-ATTCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
51079518 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* *
51079533 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGGGCTAAGTCCCGAAGGCATTT
51079598 G
65 G
51079599 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
75 2 0.02
76 47 0.38
77 11 0.09
78 9 0.07
79 15 0.12
80 39 0.31
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:51079581 original size:116 final size:117
Alignment explanation
Indices: 51079377--51079596 Score: 295
Period size: 116 Copynumber: 1.9 Consensus size: 117
51079367 TTGAATGATG
*
51079377 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
51079442 GTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTGTGCGATACTAAT
66 GTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTGTGCGATACTAAT
* * * * **
51079493 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
51079556 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGTCCCGAAGGCATT
51079597 TGAACGAGGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
115 3 0.03
116 68 0.76
117 19 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (117 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTGTGCGATACTAAT
Found at i:51083158 original size:24 final size:24
Alignment explanation
Indices: 51083130--51083177 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
51083120 TACTTTGGTA
* *
51083130 TCCGTGGTGCCGAGAGAAAGACTT
1 TCCGTGGTGCCAAAAGAAAGACTT
51083154 TCCGTGGTGCCAAAAGAAAGACTT
1 TCCGTGGTGCCAAAAGAAAGACTT
51083178 ACCTGGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (24 bp):
TCCGTGGTGCCAAAAGAAAGACTT
Found at i:51097052 original size:44 final size:44
Alignment explanation
Indices: 51097003--51097100 Score: 153
Period size: 44 Copynumber: 2.2 Consensus size: 44
51096993 TACTCGTCCA
*
51097003 AGCTAAATCCTTTTTATAACAAGGTCATTAGGATTACC-CGTTCG
1 AGCTAAATCCTTTTTATAACAAGGTCATTAGGATT-CCTCGCTCG
* *
51097047 GGCTAAATCCTTTTTATAACAAGGTCATTGGGATTCCTCGCTCG
1 AGCTAAATCCTTTTTATAACAAGGTCATTAGGATTCCTCGCTCG
51097091 AGCTAAATCC
1 AGCTAAATCC
51097101 CATCTGCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 2 0.04
44 47 0.96
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (44 bp):
AGCTAAATCCTTTTTATAACAAGGTCATTAGGATTCCTCGCTCG
Found at i:51097112 original size:44 final size:44
Alignment explanation
Indices: 51097020--51097112 Score: 98
Period size: 44 Copynumber: 2.1 Consensus size: 44
51097010 TCCTTTTTAT
* * ** * *
51097020 AACAAGGTCATTAGGATTACCCGTTCGGGCTAAATCCTTTTTAT
1 AACAAGGTCATTAGGATTACCCGCTCGAGCTAAATCCCATCTAC
* *
51097064 AACAAGGTCATTGGGATT-CCTCGCTCGAGCTAAATCCCATCTGC
1 AACAAGGTCATTAGGATTACC-CGCTCGAGCTAAATCCCATCTAC
51097108 AACAA
1 AACAA
51097113 ATGCAGGACC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
AACAAGGTCATTAGGATTACCCGCTCGAGCTAAATCCCATCTAC
Done.