Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 150 of 311
Found at i:51103109 original size:48 final size:48
Alignment explanation
Indices: 51103033--51103211 Score: 277
Period size: 48 Copynumber: 3.7 Consensus size: 48
51103023 TAAAGTACCA
* **
51103033 ATGCTATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
51103081 ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
51103129 ATGCCATGTCCCAGACATGGCCTTAAACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
51103177 ATGCCATGTCCTAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
51103212 TATAACACGG
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
Found at i:51106373 original size:47 final size:47
Alignment explanation
Indices: 51106313--51106434 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
51106303 GCATTGGCAC
*
51106313 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
51106360 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
51106407 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
51106435 CTAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:51106538 original size:55 final size:54
Alignment explanation
Indices: 51106413--51106620 Score: 215
Period size: 55 Copynumber: 3.9 Consensus size: 54
51106403 TTGGTAAGAT
* * *
51106413 AAGGATATCATGTAAGACCATG-CTAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
51106467 AAGGAAATCATGTAAGACCGTGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * * *
51106522 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTTAGTTC-ATAAAGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
51106575 AAGGATACCACGTAAGACCATGTCAAGAAATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
51106621 AAAAAGGAAA
Statistics
Matches: 129, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 40 0.31
54 39 0.30
55 42 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:51110857 original size:48 final size:48
Alignment explanation
Indices: 51110786--51111060 Score: 374
Period size: 48 Copynumber: 5.7 Consensus size: 48
51110776 TAAAGTACCA
* *
51110786 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGCCG
* * *
51110834 ATGCCATGTCCTAGACATGGTCTTACACTGACACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
51110882 ATTCCATGTCCCAGACATGGTCTTACACTGGCACACATAGCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
51110930 ATGCCATGTCCCAGACATGGCCCTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * * **
51110978 ATGCCATGTCCCAGACATGGCCATACACTGGTACACATATCATTTCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
51111026 ATGCCATGTCCTAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
51111061 TATAGCACGG
Statistics
Matches: 202, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
48 200 0.99
49 1 0.00
50 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
Found at i:51113011 original size:28 final size:28
Alignment explanation
Indices: 51112947--51113014 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
51112937 ATTTTCCTTT
*
51112947 GCACACCTAGTGCTCGTTAACCAAACTC
1 GCACACTTAGTGCTCGTTAACCAAACTC
51112975 GCACACTTAGTGCTCGTTAACCAAACTC
1 GCACACTTAGTGCTCGTTAACCAAACTC
*
51113003 GCACGCTTAGTG
1 GCACACTTAGTG
51113015 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (28 bp):
GCACACTTAGTGCTCGTTAACCAAACTC
Found at i:51115049 original size:26 final size:26
Alignment explanation
Indices: 51115020--51115127 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
51115010 TGGTACAAAT
51115020 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51115046 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51115072 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51115098 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51115124 TGAT
1 TGAT
51115128 GGGTATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51119728 original size:43 final size:44
Alignment explanation
Indices: 51119681--51119796 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 44
51119671 TATTATATAT
* * * *
51119681 CGATGCCATTGTCCCAGACAGGGTCTTACACGAAAT-TGATTAA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAA
* * * *
51119724 CGATGCCAATATCCCAAACATAGTCTTACACGTAATCTCAATAA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAA
* *
51119768 -AATGCCAATGTCCCTGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGGTCTTACA
51119797 TGTAATTACA
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
43 54 0.92
44 5 0.08
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (44 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAA
Found at i:51123640 original size:56 final size:56
Alignment explanation
Indices: 51123568--51123689 Score: 183
Period size: 56 Copynumber: 2.2 Consensus size: 56
51123558 TACATGTAAT
* * *
51123568 CACATATATTAGAATCACATA-TCGATGCCAACGTATTAAAAGTGGTCTTACTCGCA
1 CACATATATCAAAATCACATACT-GATGCCAACATATTAAAAGTGGTCTTACTCGCA
* *
51123624 CACATATATCAAAATCATATACTGATGCCAACATATTAAATGTGGTCTTACTCGCA
1 CACATATATCAAAATCACATACTGATGCCAACATATTAAAAGTGGTCTTACTCGCA
51123680 CACATATATC
1 CACATATATC
51123690 GATGGTCTTA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 59 0.98
57 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (56 bp):
CACATATATCAAAATCACATACTGATGCCAACATATTAAAAGTGGTCTTACTCGCA
Found at i:51123699 original size:26 final size:27
Alignment explanation
Indices: 51123666--51123717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
51123656 ATATTAAATG
*
51123666 TGGTCTTACTCGCACA-CATATATCGA
1 TGGTCTTACTCGCACATCACATATCGA
51123692 TGGTCTTACTCGCACATCACATATCG
1 TGGTCTTACTCGCACATCACATATCG
51123718 GAATCCTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (27 bp):
TGGTCTTACTCGCACATCACATATCGA
Found at i:51129110 original size:46 final size:46
Alignment explanation
Indices: 51129018--51129110 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
51129008 TGTAACCCGC
* *
51129018 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGGCATTAGCAT
* * * *
51129064 CCATAAGTGAACTCGGACTGAACTCAACTAGCTC-GGACATTAGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGG-CATTAGCAT
51129110 C
1 C
51129111 AGAATATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
45 2 0.05
46 38 0.95
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGGCATTAGCAT
Found at i:51129379 original size:46 final size:46
Alignment explanation
Indices: 51129234--51129383 Score: 130
Period size: 46 Copynumber: 3.2 Consensus size: 46
51129224 ACAAAATCGG
* * *
51129234 ACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCAGT
1 ACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTC-GT
* * * * * *
51129281 -CTCAAGTCAACGAGCTCAGATGCTTAGTT-ACAT-C-TCA-CGAACTCGG
1 ACTCAACTCAAAGAGCTCAGA--C--A-TTCGCATCCATAAGTGAACTCGT
51129327 ACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGT
1 ACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGT
51129373 ACTCAACTCAA
1 ACTCAACTCAA
51129384 CGAGTTCGGA
Statistics
Matches: 79, Mismatches: 14, Indels: 21
0.69 0.12 0.18
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 1 0.01
45 3 0.04
46 36 0.46
47 24 0.30
48 3 0.04
49 1 0.01
50 3 0.04
51 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (46 bp):
ACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGT
Found at i:51160984 original size:40 final size:40
Alignment explanation
Indices: 51160908--51161089 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
51160898 AACCTAAGTA
* * *
51160908 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
51160947 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
51160987 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
51161027 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
51161067 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
51161090 CATTTGAATA
Statistics
Matches: 127, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.09
40 112 0.88
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:51165226 original size:18 final size:18
Alignment explanation
Indices: 51165199--51165234 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
51165189 CATGGTACTT
51165199 AACTTACCATTCATTCTA
1 AACTTACCATTCATTCTA
*
51165217 AACTTCCCATTCATTCTA
1 AACTTACCATTCATTCTA
51165235 TTTTGAGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.39
Consensus pattern (18 bp):
AACTTACCATTCATTCTA
Found at i:51172315 original size:27 final size:27
Alignment explanation
Indices: 51172284--51173093 Score: 821
Period size: 27 Copynumber: 30.0 Consensus size: 27
51172274 AAAGTACTCC
*
51172284 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
51172311 TGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
51172338 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
51172365 CGATTTATAGAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
51172392 C-AGTTTACAGAATTACTATTTTACCAT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
51172419 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
51172446 C-AGTTTATAGAATTACTGTTTTATCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
51172473 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
51172500 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
51172527 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
51172554 CAATTTTTAAAATTACCG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
51172580 TAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
51172607 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
51172634 TGATTTACAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
51172661 C-AGTTTACAAAATTACTATTTTACCCTT
1 CGA-TTTACAGAATTACCGTTTTACCC-T
51172689 C-ATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * **
51172715 CAATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
51172742 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
51172769 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
51172796 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * **
51172823 CAATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
51172850 CTATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
51172877 C-AGTTTACAGAATTATCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
51172904 CGATTTACAGAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
51172931 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
51172958 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
51172985 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
51173012 CGATTTATAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* * * *
51173039 CGGTTTACAAAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
51173066 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
51173093 C
1 C
51173094 AATTGCGAAA
Statistics
Matches: 660, Mismatches: 105, Indels: 36
0.82 0.13 0.04
Matches are distributed among these distances:
26 31 0.05
27 619 0.94
28 10 0.02
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:51172431 original size:108 final size:107
Alignment explanation
Indices: 51172287--51173094 Score: 933
Period size: 108 Copynumber: 7.5 Consensus size: 107
51172277 GTACTCCCGA
** * * *
51172287 TTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTTTAAAATT
1 TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-ATTTATAAAATT
* *
51172352 ACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCTTCAG
65 ACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * *
51172395 TTTACAGAATTACTATTTTACCATCGATTTATAGAATTACCGTTTTACCCTCAGTTTATAGAATT
1 TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA-TTTATAAAATT
* * *
51172460 ACTGTTTTATCCTCGATTTACAGAATTATCGTTTTACCCTC-G
65 ACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * ** * *
51172502 ATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTTTAAAAT
1 -TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-ATTTATAAAAT
**
51172567 TACCG-TTTACCCTTAATTTACAGAATTACCGTTTTACCCTCAG
64 TACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * * *
51172610 TTTATAGAATTACCATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATT
1 TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA-TTTATAAAATT
** *
51172675 ACTATTTTACCCTTC-ATTTACAGAATTACCGTTTTACCCTCAA
65 ACCGTTTTACCC-TCGATTTACAGAATTACCGTTTTACCCTCAG
* * * *
51172718 TTTGTAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAGAATT
1 TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA-TTTATAAAATT
** *
51172783 ACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAA
65 ACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * * * * *
51172826 TTTGTAAAATTACTATTTTACCCTCTATTTATAGAATTATCGTTTTACCCTCAGTTTACAGAATT
1 TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA-TTTATAAAATT
* * * *
51172891 ATCATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCAG
65 ACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * * *
51172934 TTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATT
1 TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-ATTTATAAAATT
* * * *
51172999 ATCGTTTTACCCTCGATTTATAGAATTACTAG-TTTACCCTCGG
65 ACCGTTTTACCCTCGATTTACAGAATTAC-CGTTTTACCCTCAG
* * **
51173042 TTTACAAAATTA-TCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCA
1 TTTATAGAATTACT-ATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
51173095 ATTGCGAAAT
Statistics
Matches: 609, Mismatches: 80, Indels: 23
0.86 0.11 0.03
Matches are distributed among these distances:
106 1 0.00
107 94 0.15
108 511 0.84
109 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (107 bp):
TTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCATTTATAAAATTA
CCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
Found at i:51173179 original size:54 final size:54
Alignment explanation
Indices: 51173102--51173297 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
51173092 TCAATTGCGA
* *
51173102 AATTCCTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * **
51173156 AATTACTAAAATACCCTTATAGGGTAGAATTATCGAAATACCCCCGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
51173210 AATTA-TCGAAATACCCTTGTAGGGTAAAAATACCTAAATACCCCTATAGGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
** * * * *
51173264 AATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACC
51173298 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 120 0.99
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:51173289 original size:27 final size:27
Alignment explanation
Indices: 51173110--51173278 Score: 212
Period size: 27 Copynumber: 6.3 Consensus size: 27
51173100 GAAATTCCTA
*
51173110 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
**
51173137 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCG
* *
51173164 AAATACCCTTATAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTACCG
** *
51173191 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTACCG
* * * * *
51173218 AAATACCCTTGTAGGGTAAAAATACCT
1 AAATACCCCTATAGGGTAGAATTACCG
51173245 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
*
51173272 AGATACC
1 AAATACC
51173279 TTTGTGGGGT
Statistics
Matches: 120, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACCG
Found at i:51173294 original size:27 final size:27
Alignment explanation
Indices: 51173110--51173297 Score: 178
Period size: 27 Copynumber: 7.0 Consensus size: 27
51173100 GAAATTCCTA
* *
51173110 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAAAATTACCG
* * * **
51173137 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAAAATTACCG
* * *
51173164 AAATACCCTTATAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAAAATTACCG
** * *
51173191 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAAAATTACCG
* *
51173218 AAATACCCTTGTAGGGTAAAAATACCT
1 AAATACCCTTGTAGGGTAAAATTACCG
* * *
51173245 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAAAATTACCG
* * *
51173272 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAAAATTACC
51173298 ATTTTGCCCC
Statistics
Matches: 134, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAAAATTACCG
Found at i:51173295 original size:81 final size:81
Alignment explanation
Indices: 51173110--51173278 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
51173100 GAAATTCCTA
* * * *
51173110 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCTTA
1 AAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACTAAAATACCCCTA
*
51173175 TAGGGTAGAATTATCG
66 TAGGGTAGAATTACCG
* * *
51173191 AAATACCCCCGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAAAAATACCT-AAATACCCCT
1 AAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATA-CTAAAATACCCCT
51173255 ATAGGGTAGAATTACCG
65 ATAGGGTAGAATTACCG
*
51173272 AGATACC
1 AAATACC
51173279 TTTGTGGGGT
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 76 0.97
82 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (81 bp):
AAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACTAAAATACCCCTA
TAGGGTAGAATTACCG
Found at i:51173534 original size:27 final size:26
Alignment explanation
Indices: 51173496--51173578 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
51173486 CGGAGGAAGC
*
51173496 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
51173523 GTTCTGGTGGCTCTGCCATAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
51173549 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
51173576 GTT
1 GTT
51173579 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:51173698 original size:22 final size:22
Alignment explanation
Indices: 51173666--51173724 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
51173656 CCCGTTATTA
*
51173666 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
51173688 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
51173710 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
51173725 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:51174089 original size:6 final size:6
Alignment explanation
Indices: 51174080--51174181 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
51174070 TTGCATTCAC
* *
51174080 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
51174129 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG AATCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
51174177 ATTCT
1 ATTCT
51174182 TATTTTGGTT
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.08
6 67 0.85
7 4 0.05
8 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:51174143 original size:30 final size:29
Alignment explanation
Indices: 51174080--51174181 Score: 150
Period size: 30 Copynumber: 3.4 Consensus size: 29
51174070 TTGCATTCAC
*
51174080 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATT-TG
51174111 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAAT-TTG
*
51174141 ATTCTGATTCTGATTCTGTTACTGAATCTG
1 ATTCTGATTCTGATTCTGTTACT-AATTTG
51174171 ATTCTGATTCT
1 ATTCTGATTCT
51174182 TATTTTGGTT
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
30 43 0.64
31 24 0.36
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTTACTAATTTG
Found at i:51174201 original size:30 final size:30
Alignment explanation
Indices: 51174080--51174202 Score: 144
Period size: 30 Copynumber: 4.1 Consensus size: 30
51174070 TTGCATTCAC
*
51174080 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
51174111 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
*
51174141 ATTCTGATTCTGATTCTGTTACTGAA-TCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* *
51174171 ATTCTGATTCTTATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
51174201 AT
1 AT
51174203 AATGTTTCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
29 3 0.04
30 51 0.63
31 27 0.33
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:51177220 original size:28 final size:27
Alignment explanation
Indices: 51177157--51177308 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
51177147 ATATTAAGTC
* * *
51177157 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
51177184 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
51177212 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
51177239 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
51177267 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
51177294 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51177309 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:51177241 original size:55 final size:55
Alignment explanation
Indices: 51177157--51177308 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
51177147 ATATTAAGTC
* * *
51177157 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51177212 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51177267 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
51177309 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:51179618 original size:27 final size:27
Alignment explanation
Indices: 51179584--51179757 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
51179574 TAAATTGGAC
51179584 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51179611 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51179637 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51179665 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51179693 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51179720 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51179747 AGCACTGAGTG
1 AGCACTAAGTG
51179758 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51179698 original size:82 final size:81
Alignment explanation
Indices: 51179585--51179740 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51179575 AAATTGGACA
* *
51179585 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51179649 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51179666 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51179731 TGCGAGTTGA
65 TGCGAATTGA
51179741 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51188351 original size:28 final size:27
Alignment explanation
Indices: 51188288--51188439 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
51188278 ATATTAAGTC
* * *
51188288 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
51188315 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
51188343 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
51188370 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
51188398 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
51188425 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51188440 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:51188372 original size:55 final size:55
Alignment explanation
Indices: 51188288--51188439 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
51188278 ATATTAAGTC
* * *
51188288 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51188343 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51188398 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
51188440 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:51193820 original size:28 final size:27
Alignment explanation
Indices: 51193757--51193908 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
51193747 ATATTAAGTC
* * *
51193757 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
51193784 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
51193812 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
51193839 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
51193867 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
51193894 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51193909 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:51193841 original size:55 final size:55
Alignment explanation
Indices: 51193757--51193908 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
51193747 ATATTAAGTC
* * *
51193757 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51193812 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51193867 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
51193909 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:51201790 original size:27 final size:27
Alignment explanation
Indices: 51201760--51201910 Score: 239
Period size: 27 Copynumber: 5.5 Consensus size: 27
51201750 TATTAAGTCT
* * *
51201760 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAACTC
*
51201787 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAGTC-AACTC
51201815 GCACACTTAGTGCTACATAGTCAACTC
1 GCACACTTAGTGCTACATAGTCAACTC
51201842 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTC-AACTC
*
51201870 GCACACTTAGTGCTACATAGTCAATTC
1 GCACACTTAGTGCTACATAGTCAACTC
51201897 GCACACTTAGTGCT
1 GCACACTTAGTGCT
51201911 GCACAATTTA
Statistics
Matches: 118, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 65 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAACTC
Found at i:51201844 original size:55 final size:55
Alignment explanation
Indices: 51201760--51201935 Score: 262
Period size: 55 Copynumber: 3.2 Consensus size: 55
51201750 TATTAAGTCT
* * *
51201760 GCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTC
*
51201815 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTC
* * * * *
51201870 GCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCC
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACTC
51201926 GCACACTTAG
1 GCACACTTAG
51201936 CGCCAATCTC
Statistics
Matches: 110, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 94 0.85
56 16 0.15
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTC
Found at i:51203767 original size:47 final size:47
Alignment explanation
Indices: 51203693--51203854 Score: 172
Period size: 47 Copynumber: 3.5 Consensus size: 47
51203683 ATATTTGAGT
* *
51203693 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCA
* * *
51203740 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTGA--GATG-TAACTAGGCA
* *
51203786 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCA
* *
51203833 TCTGAACACGTTGAGTTGAGTC
1 TCCGAACTCGTTGAGTTGAGTC
51203855 TGATTTCGCT
Statistics
Matches: 95, Mismatches: 11, Indels: 18
0.77 0.09 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 27 0.28
47 47 0.49
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCA
Found at i:51207395 original size:18 final size:17
Alignment explanation
Indices: 51207357--51207398 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
51207347 TGCCCACATC
51207357 TCTTTTATTTTCCATAAT
1 TCTTTTATTTTCCAT-AT
51207375 TCTTTTATGTTTACCAT-T
1 TCTTTTAT-TTT-CCATAT
51207393 TCTTTT
1 TCTTTT
51207399 TCCTAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 15 0.68
19 3 0.14
20 4 0.18
ACGTcount: A:0.17, C:0.17, G:0.02, T:0.64
Consensus pattern (17 bp):
TCTTTTATTTTCCATAT
Found at i:51210127 original size:22 final size:24
Alignment explanation
Indices: 51210093--51210136 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
51210083 CATCATAATA
*
51210093 TCATCCATTTCAT-ATCACAAAAC
1 TCATCCATATCATCATCACAAAAC
*
51210116 TCAT-CATATCATCATCTCAAA
1 TCATCCATATCATCATCACAAA
51210137 CCAAATCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.39, C:0.30, G:0.00, T:0.32
Consensus pattern (24 bp):
TCATCCATATCATCATCACAAAAC
Found at i:51213627 original size:56 final size:56
Alignment explanation
Indices: 51213541--51213659 Score: 193
Period size: 56 Copynumber: 2.1 Consensus size: 56
51213531 TATGTGAAGG
* *
51213541 ATCAGATCTGTATCGTCTAAGCATTGATATATGAATTACACTATGAATCTTTTCTA
1 ATCAGATATGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTA
* *
51213597 ATCAGATATGTATCGTCTAAGTATTGATATATGAAATACATTATGAATCTTTTCTA
1 ATCAGATATGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTA
51213653 ACTCAGA
1 A-TCAGA
51213660 CGACAATGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
56 53 0.91
57 5 0.09
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (56 bp):
ATCAGATATGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTA
Found at i:51221129 original size:56 final size:56
Alignment explanation
Indices: 51221043--51221152 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
51221033 GTGAAGGATC
51221043 AGATCTGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTAATA
1 AGATCTGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTAATA
* *
51221099 AGATCTGTATCGTCTAAGTATTGATATATGAAATACATTATGAATCTTTTCTAA
1 AGATCTGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTAA
51221153 CTCAGGCGAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (56 bp):
AGATCTGTATCGTCTAAGCATTGATATATGAAATACACTATGAATCTTTTCTAATA
Found at i:51225338 original size:24 final size:25
Alignment explanation
Indices: 51225310--51225364 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
51225300 ATTTGAAAGA
*
51225310 GTTTAAAAGTT-AAAGGGATTTTAG
1 GTTTAAAAGTTAAAAGGGATTTTAC
*
51225334 GTTT--AAGTTAAAAGGGGTTTTAC
1 GTTTAAAAGTTAAAAGGGATTTTAC
*
51225357 TTTTAAAA
1 GTTTAAAA
51225365 AAGGTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 5 0.20
23 14 0.56
24 4 0.16
25 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (25 bp):
GTTTAAAAGTTAAAAGGGATTTTAC
Found at i:51233266 original size:27 final size:27
Alignment explanation
Indices: 51233227--51233304 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
51233217 CAGATTGATC
* * *
51233227 AAATGACTGTTTTGCCCTAATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGCA
* *
51233254 AAATAACTATTTTGCCCTTATATGGCA
1 AAATGACTATTTTGCCCTTATGTGGCA
*
51233281 AGATGACTATTTTGCCCTTATGTG
1 AAATGACTATTTTGCCCTTATGTG
51233305 ATGTATGACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGCA
Found at i:51239048 original size:27 final size:27
Alignment explanation
Indices: 51239018--51239121 Score: 163
Period size: 27 Copynumber: 3.9 Consensus size: 27
51239008 CCCATATTGA
* *
51239018 TAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
*
51239045 TAAAATGACTATTTTTCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
51239072 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
* *
51239099 TAAGATGATTATTTTGCCCTTAT
1 TAAAATGACTATTTTGCCCTTAT
51239122 GTGATATATG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.44
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATATGG
Found at i:51241136 original size:34 final size:34
Alignment explanation
Indices: 51241098--51241162 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
51241088 TCTTTTGGAA
* *
51241098 AGAATATAAAATTTTAATATTTTTCGTGATTAAG
1 AGAATATAAAATTTTAATATTGTCCGTGATTAAG
51241132 AGAATATAAAATTTTAATATTGTCCGTGATT
1 AGAATATAAAATTTTAATATTGTCCGTGATT
51241163 TTCTCTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (34 bp):
AGAATATAAAATTTTAATATTGTCCGTGATTAAG
Found at i:51242654 original size:31 final size:31
Alignment explanation
Indices: 51242595--51242656 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
51242585 TTAACATTGA
**
51242595 ACATACCATGTCTAACAATGTTCAATTTCTT
1 ACATACCATGTCTAACAACATTCAATTTCTT
*
51242626 ACATACCATGTCTAACAACATTCGATTTCTT
1 ACATACCATGTCTAACAACATTCAATTTCTT
51242657 CTCTCTACCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.37
Consensus pattern (31 bp):
ACATACCATGTCTAACAACATTCAATTTCTT
Found at i:51246489 original size:50 final size:48
Alignment explanation
Indices: 51246273--51246552 Score: 299
Period size: 48 Copynumber: 5.8 Consensus size: 48
51246263 GATAAGGTCT
* *
51246273 CATGCAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGACCC
1 CATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCC
* * * * * * * * * *
51246321 CGTATAAGACCATATTTGGGATATGGCACCGGCATTGAGACGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCC
* * *
51246369 CATATAAGACCATGTCTGGGACATGGCATCGGCACCGATACGAGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCC
* *
51246417 AATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGAGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATCGGCATCG--ATATGAGATCC
* * *
51246467 CATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGTGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATA--TGAGATCC
* * * * *
51246517 CATGTGACACCATATCTGGGATATGGCATTGGCATC
1 CATGTAAGACCATGTCTGGGACATGGCATCGGCATC
51246553 TTACTATGTG
Statistics
Matches: 194, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
48 111 0.57
50 83 0.43
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (48 bp):
CATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCC
Found at i:51251335 original size:20 final size:20
Alignment explanation
Indices: 51251306--51251356 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
51251296 CAGGTTAGGG
*
51251306 ACACGGGCGTGCGCCTACCC
1 ACACGGGCGTGCCCCTACCC
* *
51251326 ACATGGGCGTGCCCCTATCC
1 ACACGGGCGTGCCCCTACCC
51251346 ACACGGGCGTG
1 ACACGGGCGTG
51251357 TGGCCCTGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.39, G:0.31, T:0.14
Consensus pattern (20 bp):
ACACGGGCGTGCCCCTACCC
Found at i:51254023 original size:27 final size:27
Alignment explanation
Indices: 51253986--51254191 Score: 254
Period size: 27 Copynumber: 7.6 Consensus size: 27
51253976 GTAAATTGTA
51253986 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
51254013 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* ** *
51254040 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* *
51254067 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGATTTGACTATG
**
51254094 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
* *
51254122 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATTTGACTATG
* *
51254149 TAGCACTAAGTGTGCGAGTTGA-TGATA
1 TAGCACTAAGTGTGCGATTTGACT-ATG
*
51254176 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
51254192 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 132 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATTTGACTATG
Found at i:51263678 original size:40 final size:40
Alignment explanation
Indices: 51263594--51263818 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
51263584 TTGAATGATG
* * * *
51263594 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51263634 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51263674 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51263713 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51263753 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51263794 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51263819 AACAAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51263836 original size:80 final size:80
Alignment explanation
Indices: 51263594--51263851 Score: 224
Period size: 80 Copynumber: 3.2 Consensus size: 80
51263584 TTGAATGATG
* * * * * * *
51263594 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** * *
51263657 TTGTGCGAGAT-ACTAAT
64 TTGAACAAG-TGACTAAA
* *
51263674 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** * *
51263738 GTGCGAGTTACTAAA
66 GAACAAGTGACTAAA
* *
51263753 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
51263817 TGAACAAG-GAGCTATA
65 TGAACAAGTGA-CTAAA
* *
51263833 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51263852 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 74 0.48
80 75 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACAAGTGACTAAA
Found at i:51263840 original size:119 final size:119
Alignment explanation
Indices: 51263594--51263851 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
51263584 TTGAATGATG
* *
51263594 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** * *
51263659 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTGACTAAA
* * * **
51263713 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
51263776 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACAAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTGA-CTAAA
* *
51263833 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51263852 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTGACTAAA
Found at i:51275594 original size:41 final size:41
Alignment explanation
Indices: 51275535--51275734 Score: 219
Period size: 41 Copynumber: 4.9 Consensus size: 41
51275525 GCGACTCGAC
* *
51275535 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAATGAG
1 ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAGAATGAG
* * *
51275576 ATAGCTTTGCCTACATATGGCACTTAGCGTGCAAGAATGAG
1 ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAGAATGAG
*
51275617 ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAGAAATGTG
1 ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAG-AATGAG
** *
51275659 ATAGCTTCAG-CTATGTATGGCACTTAGTGT--GA-AATTTGAA
1 ATAGCTTC-GCCTACATATGGCACTTAGTGTGCGAGAA--TGAG
* ** *
51275699 ATAGCTTCGGCTATGTACGGCACTTAGTGTGCGAGA
1 ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAGA
51275735 TATCAAGTAG
Statistics
Matches: 137, Mismatches: 14, Indels: 14
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 31 0.23
41 68 0.50
42 33 0.24
43 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (41 bp):
ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAGAATGAG
Found at i:51275703 original size:82 final size:83
Alignment explanation
Indices: 51275535--51275734 Score: 255
Period size: 82 Copynumber: 2.4 Consensus size: 83
51275525 GCGACTCGAC
*
51275535 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAG-AATGAGATAGCTTTGCCTACATATGGCAC
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAAATGAGATAGCTTAGCCTACATATGGCAC
*
51275599 TTAGCGTGCAAGAATGAG
66 TTAGCGTGCAAGAATGAA
* * * **
51275617 ATAGCTTCGCCTACATATGGCACTTAGTGTGCGAGAAATGTGATAGCTTCAG-CTATGTATGGCA
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAAATGAGATAGCTT-AGCCTACATATGGCA
* *
51275681 CTTAGTGTG-AA-ATTTGAA
65 CTTAGCGTGCAAGA-ATGAA
* *
51275699 ATAGCTTCGGCTATGTACGGCACTTAGTGTGCGAGA
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGA
51275735 TATCAAGTAG
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
81 1 0.01
82 70 0.69
83 30 0.29
84 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (83 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAAATGAGATAGCTTAGCCTACATATGGCAC
TTAGCGTGCAAGAATGAA
Found at i:51286579 original size:45 final size:46
Alignment explanation
Indices: 51286515--51286637 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 46
51286505 TATCGGAGTG
* * * * * **
51286515 TGCCATGGTATCTTTCAACCATGATCTTTTTTATTCT-CGTTTTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTCTCCGTCATGA
* *
51286560 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTCCGTCATGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTCTCCGTCATGA
51286606 TGCCATAGTGT-TTCTCAACCATGGTCTTATTC
1 TGCCATAGTGTCTT-TCAACCATGGTCTTATTC
51286638 GTTTGATTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 33 0.49
46 34 0.51
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.45
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTCTCCGTCATGA
Found at i:51286699 original size:45 final size:45
Alignment explanation
Indices: 51286650--51286816 Score: 244
Period size: 45 Copynumber: 3.7 Consensus size: 45
51286640 TTGATTTGTA
* * * * * *
51286650 ATGCCATAGCATCTTTCAGTTATTGTCTTGCTTGATAGAATCGTG
1 ATGCCATAACGTCTTTCAGTCATGGTCTTGCTCGTTAGAATCGTG
51286695 ATGCCATAACGTCTTTCAGTCATGGTCTTGCTCGTTAGAATCGTG
1 ATGCCATAACGTCTTTCAGTCATGGTCTTGCTCGTTAGAATCGTG
*
51286740 ATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAATCGTG
1 ATGCCATAACGTCTTTCAGTCATGGTCTTGCTCGTTAGAATCGTG
* * *
51286785 ATGCCATAATGTCTTTTAGTCATGATCTTGCT
1 ATGCCATAACGTCTTTCAGTCATGGTCTTGCT
51286817 AGTTTCTGGT
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 111 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (45 bp):
ATGCCATAACGTCTTTCAGTCATGGTCTTGCTCGTTAGAATCGTG
Found at i:51286730 original size:90 final size:90
Alignment explanation
Indices: 51286625--51286821 Score: 241
Period size: 90 Copynumber: 2.2 Consensus size: 90
51286615 GTTTCTCAAC
** * * * * * * *
51286625 CATGGTCTTATTCGTTTGATTTGTAATGCCATAGCATCTTTCAGTTATTGTCTTGCTTGATAGAA
1 CATGGTCTTGCTCGTTTGAATCGTAATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAA
51286690 TCGTGATGCCATAACGTCTTTCAGT
66 TCGTGATGCCATAACGTCTTTCAGT
* * * *
51286715 CATGGTCTTGCTCGTTAGAATCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
1 CATGGTCTTGCTCGTTTGAATCGTAATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAA
* *
51286780 TCGTGATGCCATAATGTCTTTTAGT
66 TCGTGATGCCATAACGTCTTTCAGT
* *
51286805 CATGATCTTGCTAGTTT
1 CATGGTCTTGCTCGTTT
51286822 CTGGTATGGT
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.41
Consensus pattern (90 bp):
CATGGTCTTGCTCGTTTGAATCGTAATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAA
TCGTGATGCCATAACGTCTTTCAGT
Found at i:51291578 original size:186 final size:185
Alignment explanation
Indices: 51291373--51291739 Score: 581
Period size: 186 Copynumber: 2.0 Consensus size: 185
51291363 AAATCTATTT
* * * *
51291373 TTTTATTAAAAAATACAAACGAATCTTATTTAAATTTATAACCTAACTTATTAAAATCTATCAAT
1 TTTTATTAAAAAATACAAACGAATCTCATTTAAACTTATAACCTAACTTACTAAAACCTATCAAT
* *
51291438 CTAATTTGACTAAAACTTAAAATCAAATTCTATTTATAATTATAATATATTATTTTCCAAAATTA
66 CTAATTTGACTAAAACTTAAAATCAAATTCTAATTAAAATTATAATATATTATTTTCCAAAATTA
51291503 AAATCTAAACCTATTAAAAGCCAAAAATCTAATTTTACTACAACTTAAAATCTAAC
131 AAATCTAAACCTATT-AAAGCCAAAAATCTAATTTTACTACAACTTAAAATCTAAC
* ** * *
51291559 TTTTATTAAAAATTACAAACGAATCTCATTTAAACTTATAATTTAATTTGCTAAAACCTATCAAT
1 TTTTATTAAAAAATACAAACGAATCTCATTTAAACTTATAACCTAACTTACTAAAACCTATCAAT
* * * *
51291624 CTAATTTTACTAAAACTTAAAATCAAATTGTAATTAAAATTCTAATATATTTTTTTCCAAAATTA
66 CTAATTTGACTAAAACTTAAAATCAAATTCTAATTAAAATTATAATATATTATTTTCCAAAATTA
*
51291689 AAATCTAAACCTATTAAAGCTAAAAATCTAATTTTACTACAACTTAAAATC
131 AAATCTAAACCTATTAAAGCCAAAAATCTAATTTTACTACAACTTAAAATC
51291740 AAACCCTTTT
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
185 35 0.21
186 130 0.79
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (185 bp):
TTTTATTAAAAAATACAAACGAATCTCATTTAAACTTATAACCTAACTTACTAAAACCTATCAAT
CTAATTTGACTAAAACTTAAAATCAAATTCTAATTAAAATTATAATATATTATTTTCCAAAATTA
AAATCTAAACCTATTAAAGCCAAAAATCTAATTTTACTACAACTTAAAATCTAAC
Found at i:51291647 original size:23 final size:23
Alignment explanation
Indices: 51291526--51291739 Score: 94
Period size: 23 Copynumber: 9.3 Consensus size: 23
51291516 TTAAAAGCCA
*
51291526 AAAATCTAATTTTACTACAACTT
1 AAAATCTAATTTTACTAAAACTT
* *
51291549 AAAATCTAACTTTTATTAAAAATT
1 AAAATCTAA-TTTTACTAAAACTT
* * * * *
51291573 ACAAA-CGAATCTCATTTAAACTT
1 A-AAATCTAATTTTACTAAAACTT
* * * *
51291596 ATAATTTAA-TTTGCTAAAACCT
1 AAAATCTAATTTTACTAAAACTT
*
51291618 ATCAATCTAATTTTACTAAAACTT
1 A-AAATCTAATTTTACTAAAACTT
* * *
51291642 AAAATCAAATTGTAATTAAAA-TT
1 AAAATCTAATT-TTACTAAAACTT
** * * * *
51291665 CTAATATATTTTTTTCCAAAA-TT
1 AAAATCTA-ATTTTACTAAAACTT
*** * * *
51291688 AAAATCTAAACCTATTAAAGCTA
1 AAAATCTAATTTTACTAAAACTT
*
51291711 AAAATCTAATTTTACTACAACTT
1 AAAATCTAATTTTACTAAAACTT
51291734 AAAATC
1 AAAATC
51291740 AAACCCTTTT
Statistics
Matches: 130, Mismatches: 53, Indels: 16
0.65 0.27 0.08
Matches are distributed among these distances:
22 14 0.11
23 77 0.59
24 36 0.28
25 3 0.02
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (23 bp):
AAAATCTAATTTTACTAAAACTT
Found at i:51291733 original size:92 final size:93
Alignment explanation
Indices: 51291435--51292246 Score: 697
Period size: 92 Copynumber: 8.8 Consensus size: 93
51291425 AAAATCTATC
* * * *
51291435 AATCTAATTTGACTAAAACTTAAAATCAAATTCTATTTATAATTATAATATAT-TATTTTCCAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATAT-TTTTCCAAA
* *
51291499 ATTAAAATCTAAACCTATTAAAAGCC-AAA
65 ATTATAATCTAAACCTATTAGAA-CCTAAA
* ** * * *
51291528 AATCTAATTTTACTACAACTTAAAATCTAACTTTTATTAAAAATTACAA-ACGA-ATCTCATTT-
1 AATCTAATTTTACTACAACTTAAAATC-AAATCCTATTTAAAATTATAATA-TATAT-T--TTTC
* * ** ** * **
51291590 -AAACTTATAAT-TTAATTTGCTAAAACCTATC
61 CAAAATTATAATCTAAACCTATTAGAACCTAAA
* ** * * *
51291621 AATCTAATTTTACTAAAACTTAAAATCAAATTGTAATTAAAATTCTAATATATTTTTTTCCAAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATATTTTTCCAAAA
* *
51291686 TTAAAATCTAAACCTATTA-AAGCTAAA
66 TTATAATCTAAACCTATTAGAACCTAAA
* ** * *
51291713 AATCTAATTTTACTACAACTTAAAATCAAACCCT-TTTAAACCTATAATCTA-ATTTTACCAAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATATTTTTCCAAAA
51291776 TTATAATCTAAA-CTATTAGAACCTAAA
66 TTATAATCTAAACCTATTAGAACCTAAA
* ** * * ** * *
51291803 AATATAATACTATTACAACTTAAAATCAAATCCTTTTTAAACCTATTATCTA-ATTTTTCCAAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATATTTTTCCAAAA
* * *
51291867 TTATGATCTAAGCCTATTAAAACCTAAA
66 TTATAATCTAAACCTATTAGAACCTAAA
* ** * * *
51291895 AATATAATTTTACTACAACTTAAAATCAAATCCTATTTAAACCTATAGTCTA-ATTTTACCAAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATATTTTTCCAAAA
*
51291959 TTATAATCCAAACCTATTAGAACCTAAA
66 TTATAATCTAAACCTATTAGAACCTAAA
* * ** * *** ** *
51291987 AATATGATACTACTACAACTTAAAACCAAATCCTATTTAATCCTATTGTCTA-ATTTTTCCAAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATATTTTTCCAAAA
* *
51292051 TTATGATCTAAGCCTATTAGAACCTAAA
66 TTATAATCTAAACCTATTAGAACCTAAA
* * ** *
51292079 AATCTAATTTTACTAGAACTTAAAATCAGATCCTATTTAAACCTATAA-ACTA-ATTTTACCAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATA-TATATTTTTCCAAA
* *
51292142 ATTACAATATAAACCTATTAGAACCTAAA
65 ATTATAATCTAAACCTATTAGAACCTAAA
* * * * *
51292171 ATTATAATTTTACTACAACTTGAAATCAAATCCTATTT-AAATCTATAATCTA-ATTTTACCAAA
1 AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAAT-TATAATATATATTTTTCCAAA
* *
51292234 ATTAAAACCTAAA
65 ATTATAATCTAAA
51292247 AATCTAGTTT
Statistics
Matches: 594, Mismatches: 108, Indels: 35
0.81 0.15 0.05
Matches are distributed among these distances:
89 6 0.01
90 60 0.10
91 51 0.09
92 376 0.63
93 70 0.12
94 28 0.05
96 3 0.01
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.36
Consensus pattern (93 bp):
AATCTAATTTTACTACAACTTAAAATCAAATCCTATTTAAAATTATAATATATATTTTTCCAAAA
TTATAATCTAAACCTATTAGAACCTAAA
Found at i:51292019 original size:184 final size:184
Alignment explanation
Indices: 51291675--51292237 Score: 862
Period size: 184 Copynumber: 3.1 Consensus size: 184
51291665 CTAATATATT
** * *
51291675 TTTTTCCAAAATTAAAATCTAAACCTATT-AAAGCTAAAAATCTAATTTTACTACAACTTAAAAT
1 TTTTTCCAAAATTATGATCTAAGCCTATTAAAACCTAAAAATCTAATTTTACTACAACTTAAAAT
*
51291739 CAAACCCT-TTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAA-CTATTAGAACCTAA
66 CAAATCCTATTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACCTATTAGAACCTAA
* *
51291802 AAATATAATACTATTACAACTTAAAATCAAATCCTTTTTAAACCTATTATCTAA
131 AAATATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATTATCTAA
*
51291856 TTTTTCCAAAATTATGATCTAAGCCTATTAAAACCTAAAAATATAATTTTACTACAACTTAAAAT
1 TTTTTCCAAAATTATGATCTAAGCCTATTAAAACCTAAAAATCTAATTTTACTACAACTTAAAAT
* *
51291921 CAAATCCTATTTAAACCTATAGTCTAATTTTACCAAAATTATAATCCAAACCTATTAGAACCTAA
66 CAAATCCTATTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACCTATTAGAACCTAA
* * * *
51291986 AAATATGATACTACTACAACTTAAAACCAAATCCTATTTAATCCTATTGTCTAA
131 AAATATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATTATCTAA
* *
51292040 TTTTTCCAAAATTATGATCTAAGCCTATTAGAACCTAAAAATCTAATTTTACTAGAACTTAAAAT
1 TTTTTCCAAAATTATGATCTAAGCCTATTAAAACCTAAAAATCTAATTTTACTACAACTTAAAAT
* * * *
51292105 CAGATCCTATTTAAACCTATAAACTAATTTTACCAAAATTACAATATAAACCTATTAGAACCTAA
66 CAAATCCTATTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACCTATTAGAACCTAA
* ** * * *
51292170 AATTATAATTTTACTACAACTTGAAATCAAATCCTATTTAAATCTATAATCTAA
131 AAATATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATTATCTAA
*
51292224 TTTTACCAAAATTA
1 TTTTTCCAAAATTA
51292238 AAACCTAAAA
Statistics
Matches: 345, Mismatches: 34, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
181 26 0.08
182 40 0.12
183 39 0.11
184 240 0.70
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (184 bp):
TTTTTCCAAAATTATGATCTAAGCCTATTAAAACCTAAAAATCTAATTTTACTACAACTTAAAAT
CAAATCCTATTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACCTATTAGAACCTAA
AAATATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATTATCTAA
Found at i:51292145 original size:276 final size:273
Alignment explanation
Indices: 51291610--51292240 Score: 803
Period size: 276 Copynumber: 2.3 Consensus size: 273
51291600 TTTAATTTGC
** * * ** * * * * *
51291610 TAAAACCTATCAATCTAATTTTACTAAAACTTAAAATCAAATTGTAATTAAAATTCTAATATATT
1 TAAAACCTAAAAATATAATTTTACTACAACTTAAAATCAAATCCTATTTAAAACTATAATCTA-A
* * * * ** *
51291675 TTTTTCCAAAATTAAAATCTAAACCTATTAAAGCTAAAAATCTAATTTTACTACAACTTAAAATC
65 TTTTACCAAAATTAAAATCCAAACCTATTAAACCTAAAAATATAATACTACTACAACTTAAAACC
51291740 AAACCCTTTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACTATTAGAACCTAAAAA
130 AAACCCTTTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACTATTAGAACCTAAAAA
* * * * *
51291805 TATAATACTATTACAACTTAAAATCAAATCCTTTTTAAACCTATTATCTAATTTTTCCAAAATTA
195 TATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATAAACTAATTTTACCAAAATTA
** * *
51291870 TGATCTAAGCCTAT
260 CAATATAAACCTAT
* *
51291884 TAAAACCTAAAAATATAATTTTACTACAACTTAAAATCAAATCCTATTTAAACCTATAGTCTAAT
1 TAAAACCTAAAAATATAATTTTACTACAACTTAAAATCAAATCCTATTTAAAACTATAATCTAAT
* *
51291949 TTTACCAAAATTATAATCCAAACCTATTAGAACCTAAAAATATGATACTACTACAACTTAAAACC
66 TTTACCAAAATTAAAATCCAAACCTATTA-AACCTAAAAATATAATACTACTACAACTTAAAACC
* * ** * * *
51292014 AAATCCTATTTAATCCTATTGTCTAATTTTTCCAAAATTATGATCTAAGCCTATTAGAACCTAAA
130 AAACCCT-TTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAA-ACTATTAGAACCTAAA
* ** * *
51292079 AATCTAATTTTACTAGAACTTAAAATCAGATCCTATTTAAACCTATAAACTAATTTTACCAAAAT
193 AATATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATAAACTAATTTTACCAAAAT
51292144 TACAATATAAACCTAT
258 TACAATATAAACCTAT
* * * *
51292160 TAGAACCTAAAATTATAATTTTACTACAACTTGAAATCAAATCCTATTTAAATCTATAATCTAAT
1 TAAAACCTAAAAATATAATTTTACTACAACTTAAAATCAAATCCTATTTAAAACTATAATCTAAT
51292225 TTTACCAAAATTAAAA
66 TTTACCAAAATTAAAA
51292241 CCTAAAAATC
Statistics
Matches: 305, Mismatches: 49, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
273 27 0.09
274 86 0.28
275 35 0.11
276 157 0.51
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (273 bp):
TAAAACCTAAAAATATAATTTTACTACAACTTAAAATCAAATCCTATTTAAAACTATAATCTAAT
TTTACCAAAATTAAAATCCAAACCTATTAAACCTAAAAATATAATACTACTACAACTTAAAACCA
AACCCTTTTAAACCTATAATCTAATTTTACCAAAATTATAATCTAAACTATTAGAACCTAAAAAT
ATAATACTACTACAACTTAAAATCAAATCCTATTTAAACCTATAAACTAATTTTACCAAAATTAC
AATATAAACCTAT
Found at i:51295279 original size:19 final size:20
Alignment explanation
Indices: 51295255--51295292 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51295245 GGTACCACCA
51295255 AAACA-TATATCA-CATCTTT
1 AAACATTAT-TCATCATCTTT
51295274 AAACATTATTCATCATCTT
1 AAACATTATTCATCATCTT
51295293 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATTATTCATCATCTTT
Found at i:51295292 original size:20 final size:19
Alignment explanation
Indices: 51295255--51295292 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
51295245 GGTACCACCA
51295255 AAACATATATCACATCTTT
1 AAACATATATCACATCTTT
51295274 AAACAT-TATTCATCATCTT
1 AAACATATA-TCA-CATCTT
51295293 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.12
19 9 0.53
20 6 0.35
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (19 bp):
AAACATATATCACATCTTT
Found at i:51295632 original size:93 final size:93
Alignment explanation
Indices: 51295522--51295692 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51295512 GCCCCTAAGT
* * *
51295522 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
51295587 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
51295615 GAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
51295680 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51295693 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51295689 original size:46 final size:46
Alignment explanation
Indices: 51295517--51295689 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
51295507 AACCCGCCCC
* * * *
51295517 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
51295563 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
51295611 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
51295656 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51295690 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:51296146 original size:30 final size:30
Alignment explanation
Indices: 51296112--51296171 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51296102 ATTTAATACG
51296112 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** * *
51296142 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
51296172 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:51297067 original size:12 final size:12
Alignment explanation
Indices: 51297050--51297079 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51297040 AGACACACGA
51297050 CCGTGTCTCAGC
1 CCGTGTCTCAGC
51297062 CCGTGTCTCAGC
1 CCGTGTCTCAGC
*
51297074 CTGTGT
1 CCGTGT
51297080 AGTCAAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.37, G:0.27, T:0.30
Consensus pattern (12 bp):
CCGTGTCTCAGC
Found at i:51298948 original size:33 final size:33
Alignment explanation
Indices: 51298906--51298968 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
51298896 ACACTGGCTC
51298906 ACACATCTAAGTCGATGCCATGTCCAAGACCTT
1 ACACATCTAAGTCGATGCCATGTCCAAGACCTT
* *
51298939 ACACATCTAATTTGATGCCATGTCCAAGAC
1 ACACATCTAAGTCGATGCCATGTCCAAGAC
51298969 AAGTCTTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (33 bp):
ACACATCTAAGTCGATGCCATGTCCAAGACCTT
Found at i:51299008 original size:49 final size:48
Alignment explanation
Indices: 51298952--51299127 Score: 205
Period size: 49 Copynumber: 3.6 Consensus size: 48
51298942 CATCTAATTT
* *
51298952 GATGCCATGTCCAAGACAAGTCTTACACTGACTTACATATATCGAGGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTT-CATATATCGAGGTC
* *
51299001 GATGCCATGTCCCAGACAGGTCTTACACT-AGCTCTCATCTATTG-GTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CT-TCATATATCGAG-GTC
* * * *
51299050 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTGTATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTT-CATATATCGAGGTC
*
51299099 GATG-CATGTCCCAGACATGTCTTACACTG
1 GATGCCATGTCCCAGACAGGTCTTACACTG
51299128 GCTCTTATAA
Statistics
Matches: 110, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
48 27 0.25
49 81 0.74
50 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTCATATATCGAGGTC
Found at i:51299163 original size:46 final size:48
Alignment explanation
Indices: 51298952--51299172 Score: 191
Period size: 49 Copynumber: 4.6 Consensus size: 48
51298942 CATCTAATTT
* * * ** *
51298952 GATGCCATGTCCAAGACAAGTCTTACACTGACTTACATATATCGAGGTC
1 GATG-CATGTCCCAGACATGTCTTACACTGGCTTGTATATATCGAGGCC
* * * * * *
51299001 GATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATCTATTG-GTGTC
1 GATG-CATGTCCCAGACATGTCTTACACTGGCT-TGTATATATCGAG-GCC
* *
51299050 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTGTATATCTCGAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTGGCTTGTATATATCGAGGCC
* *
51299099 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-TATA-AT-GTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-TGTATATATCGAGGCC
* *
51299145 GATGCATGTTCTAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
51299173 AGCACACATA
Statistics
Matches: 149, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
46 30 0.20
47 1 0.01
48 33 0.22
49 83 0.56
50 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTGTATATATCGAGGCC
Found at i:51299861 original size:20 final size:20
Alignment explanation
Indices: 51299836--51299874 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51299826 AAAATTTCAA
51299836 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
51299856 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
51299875 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:51303193 original size:17 final size:17
Alignment explanation
Indices: 51303171--51303226 Score: 112
Period size: 17 Copynumber: 3.3 Consensus size: 17
51303161 GCTACAGGGG
51303171 ACACATGGCCGTGTGTC
1 ACACATGGCCGTGTGTC
51303188 ACACATGGCCGTGTGTC
1 ACACATGGCCGTGTGTC
51303205 ACACATGGCCGTGTGTC
1 ACACATGGCCGTGTGTC
51303222 ACACA
1 ACACA
51303227 CGGCTGAGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (17 bp):
ACACATGGCCGTGTGTC
Found at i:51305716 original size:40 final size:39
Alignment explanation
Indices: 51305664--51305847 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
51305654 TAACTCATTC
*
51305664 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
51305704 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
51305744 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
51305784 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
51305825 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51305848 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:51305726 original size:79 final size:80
Alignment explanation
Indices: 51305627--51305847 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
51305617 CTCGTTCAAG
* * ** * *
51305627 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
51305690 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
51305706 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
51305771 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
51305786 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
51305848 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:51305807 original size:80 final size:80
Alignment explanation
Indices: 51305667--51305847 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
51305657 CTCATTCAAT
* * *
51305667 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
51305731 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
51305746 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
51305809 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
51305827 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
51305848 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:51313558 original size:40 final size:39
Alignment explanation
Indices: 51313506--51313689 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
51313496 TAACTCATTC
*
51313506 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
51313546 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
51313586 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
51313626 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
51313667 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51313690 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:51313568 original size:79 final size:80
Alignment explanation
Indices: 51313469--51313689 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
51313459 CTCGTTCAAG
* * ** * *
51313469 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
51313532 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
51313548 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
51313613 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
51313628 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
51313690 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:51313649 original size:80 final size:80
Alignment explanation
Indices: 51313509--51313689 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
51313499 CTCATTCAAT
* * *
51313509 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
51313573 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
51313588 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
51313651 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
51313669 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
51313690 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:51318935 original size:11 final size:11
Alignment explanation
Indices: 51318919--51318943 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51318909 TTATATATAC
51318919 TAATAAAATAA
1 TAATAAAATAA
51318930 TAATAAAATAA
1 TAATAAAATAA
51318941 TAA
1 TAA
51318944 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:51319087 original size:36 final size:36
Alignment explanation
Indices: 51319042--51319114 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
51319032 TTTCTAGATT
51319042 TCTCTCTTCCAATTGACTATTTTGCCCTTTGTGATC
1 TCTCTCTTCCAATTGACTATTTTGCCCTTTGTGATC
51319078 TCTCTCTTCCAATTGACTATTTTGCCCTTTGTGATC
1 TCTCTCTTCCAATTGACTATTTTGCCCTTTGTGATC
51319114 T
1 T
51319115 TTTAAAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.14, C:0.27, G:0.11, T:0.48
Consensus pattern (36 bp):
TCTCTCTTCCAATTGACTATTTTGCCCTTTGTGATC
Found at i:51319562 original size:47 final size:46
Alignment explanation
Indices: 51319509--51319777 Score: 244
Period size: 47 Copynumber: 5.7 Consensus size: 46
51319499 GTAAGGTGCT
*
51319509 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAAGCC
* *
51319556 GATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCATAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCA-AGCC
* * * * * * *
51319604 AATGCATGTCCTAAACATGTCTTACACTGGCTTA-CGTCCCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCATCATCTC-AAGCC
* *
51319650 GATGCATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-GCC
* * * *
51319696 GATACCATGTCCCAGACATGGTCTTACACTGGATCTCATAATGT--GGCC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGG--CTCATCATCTCAAGCC
*
51319744 GATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCA
51319778 CAAACAAATG
Statistics
Matches: 187, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
44 4 0.02
45 1 0.01
46 72 0.39
47 81 0.43
48 23 0.12
50 3 0.02
51 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGCC
Found at i:51319766 original size:140 final size:141
Alignment explanation
Indices: 51319509--51319771 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
51319499 GTAAGGTGCT
* * * *
51319509 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATACCATGTCCCAGACA
* *
51319574 TGGTCTTACACTGACTATCATCTCATAGCCAATGCATGTCCTAAACATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACTATCATATCATAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTAC
51319639 GTCCCGAGGCC
131 GTCCCGAGGCC
*
51319650 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATACCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCGATACCATGTCCCAGA
* * * * *
51319712 CATGGTCTTACACTGGA-TCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
64 CATGGTCTTACACT-GACTATCAT-ATCATAGCCAATGCATGTCCCAAACATGTCTTACACT
51319772 AGCTCACAAA
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 78 0.74
141 7 0.07
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATACCATGTCCCAGACA
TGGTCTTACACTGACTATCATATCATAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTAC
GTCCCGAGGCC
Found at i:51323844 original size:24 final size:24
Alignment explanation
Indices: 51323811--51323906 Score: 95
Period size: 24 Copynumber: 4.0 Consensus size: 24
51323801 GATTCGGTAT
*
51323811 GCTCTAACGAGCTGCAATCAGTAA
1 GCTCTCACGAGCTGCAATCAGTAA
* *
51323835 GCTC-CTACGAGCTGAGAATTAGTAA
1 GCTCTC-ACGAGCTG-CAATCAGTAA
* * **
51323860 GCTCTCAAGAGCTACAATTGGTAA
1 GCTCTCACGAGCTGCAATCAGTAA
*
51323884 GCTTTCACGAGCTGCAATCAGTA
1 GCTCTCACGAGCTGCAATCAGTA
51323907 CTCCTTAATG
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
24 38 0.67
25 18 0.32
26 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (24 bp):
GCTCTCACGAGCTGCAATCAGTAA
Found at i:51326855 original size:106 final size:105
Alignment explanation
Indices: 51326660--51326859 Score: 294
Period size: 106 Copynumber: 1.9 Consensus size: 105
51326650 TTTTTAATGA
* * **
51326660 TTAAGAATGTATTGGTCCTTTTGACGCGAAGTGGAATGACAACCAAGCACCCCACTCTGGTTACT
1 TTAAGAATGTATTGGCCCTTTTGACGCGAAGTGGAATGACAACCAAGCACCCCACCCCAGTTACT
* * *
51326725 CAGCCCAATATACGCCTAATTTATTATATTATATATATTGT
66 AAGCCCAACACACGCCTAATTTATT-TATTATATATATTGT
51326766 TTAAGAATGTATTGGCCCTTTTGACGCGAAGTGGAATGACAACCCAAGCACCCCACCCCAGTTAC
1 TTAAGAATGTATTGGCCCTTTTGACGCGAAGTGGAATGACAA-CCAAGCACCCCACCCCAGTTAC
* *
51326831 TAAGCCCAACACACTCTTAA-TTATTTATT
65 TAAGCCCAACACACGCCTAATTTATTTATT
51326860 TTTTATTTAA
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
105 4 0.05
106 46 0.55
107 34 0.40
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (105 bp):
TTAAGAATGTATTGGCCCTTTTGACGCGAAGTGGAATGACAACCAAGCACCCCACCCCAGTTACT
AAGCCCAACACACGCCTAATTTATTTATTATATATATTGT
Found at i:51329947 original size:49 final size:50
Alignment explanation
Indices: 51329867--51330099 Score: 281
Period size: 49 Copynumber: 4.7 Consensus size: 50
51329857 ATCTATTGTG
* **
51329867 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * ** *
51329917 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
51329967 CGATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
51330017 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTAGGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
51330067 -GGTCGCATGTGTAGTACTAAGTGCAGCCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
51330100 TGCGTACTAG
Statistics
Matches: 153, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 71 0.46
50 46 0.30
51 36 0.24
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:51332183 original size:48 final size:48
Alignment explanation
Indices: 51332063--51332236 Score: 196
Period size: 48 Copynumber: 3.6 Consensus size: 48
51332053 TGATATGTGT
* * * * *
51332063 GCTAGTGTAAGACATGTCTGGGACAAGCATCAGCCACAGC-AT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GCAATATACAA
* **
51332109 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCG-AGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCA-ATATACAA
51332157 G-TCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATACAA
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATACAA
*
51332205 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
51332237 AGCTTGTTGT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
45 1 0.01
46 35 0.32
47 1 0.01
48 65 0.60
49 7 0.06
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATACAA
Found at i:51332308 original size:49 final size:48
Alignment explanation
Indices: 51332251--51332380 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 48
51332241 TGTTGTGTGA
*
51332251 CAGTGTAAGACCTGTCTGAGACATGACATCGACGCCGATAGATAAG-AGC
1 CAGTGTAAGACCTGTCTGAGACATGACATCGACACC-AT-GATAAGAAGC
* * * *
51332300 CAGTGTAAGACCTTTCT-AGGACATGGCATCGACATCATTATAAGAAAGC
1 CAGTGTAAGACCTGTCTGA-GACATGACATCGACACCATGATAAG-AAGC
* *
51332349 CAGTGTAAGATCATGTCTGGGACATGACATCG
1 CAGTGTAAGA-CCTGTCTGAGACATGACATCG
51332381 GCATCTTAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
47 5 0.07
48 3 0.04
49 43 0.64
50 16 0.24
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGAGACATGACATCGACACCATGATAAGAAGC
Found at i:51333971 original size:22 final size:21
Alignment explanation
Indices: 51333935--51333998 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
51333925 AACATGCAAG
*
51333935 AAAT-AAAGAAAATAAAATAGA
1 AAATAAAATAAAATAAAATA-A
51333956 AAATAAAATAAAATAAAATAA
1 AAATAAAATAAAATAAAATAA
* *
51333977 AATAAAAAATAAAA-AAATTAA
1 AA-ATAAAATAAAATAAAATAA
51333998 A
1 A
51333999 TTGGGTTGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 14 0.37
22 24 0.63
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (21 bp):
AAATAAAATAAAATAAAATAA
Found at i:51333985 original size:27 final size:24
Alignment explanation
Indices: 51333943--51333999 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 24
51333933 AGAAATAAAG
51333943 AAAATAAAATAGAAAATAAAATAAAAT
1 AAAATAAAATA-AAAA-AAAA-AAAAT
51333970 AAAATAAAATAAAAAATAAAAAAAT
1 AAAATAAAATAAAAAA-AAAAAAAT
*
51333995 TAAAT
1 AAAAT
51334000 TGGGTTGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 10 0.36
26 7 0.25
27 11 0.39
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (24 bp):
AAAATAAAATAAAAAAAAAAAAAT
Found at i:51333990 original size:5 final size:5
Alignment explanation
Indices: 51333943--51333983 Score: 64
Period size: 5 Copynumber: 7.8 Consensus size: 5
51333933 AGAAATAAAG
51333943 AAAAT AAAAT AGAAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT --AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
51333984 AATAAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 29 0.85
7 5 0.15
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:51339154 original size:38 final size:38
Alignment explanation
Indices: 51339111--51339222 Score: 127
Period size: 39 Copynumber: 2.9 Consensus size: 38
51339101 AAAATTTATG
51339111 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
1 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
* * * *
51339149 TGGTATTATATCCGGACTTATAGT-CCGCAGGCCTAGTGC
1 TGGTATTATATCCGG-GTTA-AATCCCGCAGGCTTAATGC
* *
51339188 TGGTAATAGATATCCGGGTTAAATCCTGCAGGCTT
1 TGGT-AT-TATATCCGGGTTAAATCCCGCAGGCTT
51339223 TGTGCTAGAA
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
38 15 0.25
39 22 0.37
40 15 0.25
41 8 0.13
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
Found at i:51342992 original size:49 final size:48
Alignment explanation
Indices: 51342820--51342992 Score: 161
Period size: 49 Copynumber: 3.6 Consensus size: 48
51342810 AAATGCTAAC
* * * *
51342820 GCCATGTTCCAGACATGGTCTTACACTGGCTAGCA-C-ATTGAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCG-GGTCGAT
* * ** * * * *
51342868 GCCGTGTCCTAGACAGGTCTTACACTAACTTTCATATATCGAGGCCAAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCG-GGTCGAT
* *
51342917 GCCATGTCCCAGACAGGTCTCACACTGGCTCTCATCTATCGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG-GTCGAT
*
51342966 GCCATATCCCAGACAGGTCTTACACTG
1 GCCATGTCCCAGACAGGTCTTACACTG
51342993 ACACACAAAA
Statistics
Matches: 99, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
47 15 0.15
48 13 0.13
49 71 0.72
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGGGTCGAT
Found at i:51343069 original size:48 final size:46
Alignment explanation
Indices: 51343015--51343129 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 46
51343005 CTGATGCCAC
* * * * *
51343015 GTCCCAGACAAGTTTTACACTAGCTTGTATATCCCAAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAAC-TCTA-ATCCCAAGACCGATGCAT
* * * *
51343063 GTCCCAGATATGTCTTACACTAACTCTAATCTCAATATCGATGCAT
1 GTCCCAGACATGTCTTACACTAACTCTAATCCCAAGACCGATGCAT
51343109 GTCCCAGACATGTCTTACACT
1 GTCCCAGACATGTCTTACACT
51343130 GCCACTCATG
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 34 0.60
47 3 0.05
48 20 0.35
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACTAACTCTAATCCCAAGACCGATGCAT
Found at i:51347849 original size:42 final size:40
Alignment explanation
Indices: 51347742--51347890 Score: 228
Period size: 41 Copynumber: 3.6 Consensus size: 40
51347732 ACTACTTGCT
*
51347742 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
51347782 CAAATGCCTTCGGCGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGG-GACTTAGCCCGGATATAGTAACTCGCA
*
51347823 CAAATGCCTTTCGGGACTTTAGCCCGGA-ATTAGTCACTCAGCA
1 CAAATGCC-TTCGGGAC-TTAGCCCGGATA-TAGTAACTC-GCA
51347866 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51347891 TTATCATCCG
Statistics
Matches: 102, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
40 13 0.13
41 47 0.46
42 31 0.30
43 11 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51355794 original size:40 final size:40
Alignment explanation
Indices: 51355741--51355925 Score: 300
Period size: 40 Copynumber: 4.6 Consensus size: 40
51355731 ACTACTTGCT
** *
51355741 CAAATGCCTTCGGGACTTAGCCTAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51355781 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
51355821 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51355861 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
51355901 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51355926 TTATCATCCG
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51362427 original size:20 final size:20
Alignment explanation
Indices: 51362404--51362442 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51362394 AAAATGAATA
*
51362404 GTAATTATTATGAATTATCC
1 GTAAATATTATGAATTATCC
*
51362424 GTAAATGTTATGAATTATC
1 GTAAATATTATGAATTATC
51362443 TAGTAATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.44
Consensus pattern (20 bp):
GTAAATATTATGAATTATCC
Found at i:51362747 original size:19 final size:19
Alignment explanation
Indices: 51362719--51362768 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
51362709 CCTTAAAATA
*
51362719 GTATCGATAC-AGAGGTAAG
1 GTATCAATACTAGAGG-AAG
*
51362738 GTATCAATACCTTGAGGAAG
1 GTATCAATA-CTAGAGGAAG
51362758 GTATCAATACT
1 GTATCAATACT
51362769 TTATGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.37
20 13 0.48
21 4 0.15
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (19 bp):
GTATCAATACTAGAGGAAG
Found at i:51370580 original size:22 final size:22
Alignment explanation
Indices: 51370519--51370588 Score: 53
Period size: 22 Copynumber: 3.4 Consensus size: 22
51370509 TTTCATTATG
*
51370519 TATCATATTGTAAATGTATTTA
1 TATCATGTTGTAAATGTATTTA
* * *
51370541 TAACATG-TAT-CA--TA-TTA
1 TATCATGTTGTAAATGTATTTA
51370558 TATCATGTTGTAAATGTATTTA
1 TATCATGTTGTAAATGTATTTA
51370580 TGA-CATGTT
1 T-ATCATGTT
51370589 TGTATGTTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 12
0.65 0.13 0.22
Matches are distributed among these distances:
17 9 0.26
18 4 0.11
19 1 0.03
20 1 0.03
21 4 0.11
22 15 0.43
23 1 0.03
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.47
Consensus pattern (22 bp):
TATCATGTTGTAAATGTATTTA
Found at i:51373865 original size:49 final size:48
Alignment explanation
Indices: 51373787--51373975 Score: 216
Period size: 49 Copynumber: 3.8 Consensus size: 48
51373777 GTAGACAGGG
* * *
51373787 TTATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAA
1 TTATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * *
51373836 TTATACGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAA
1 TTAT-CGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* * * * *
51373886 GTTATCGGGTACGCATCGTAGCCAGCACTTAGTACTACACATACGACCAA
1 -TTATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
*
51373936 TTATCCGATACACGTAGTAGCCTGCACTTAGTACTACACA
1 TTAT-CGGTACACGTAGTAGCCTGCACTTAGTACTACACA
51373976 CGTAACCTCA
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
49 71 0.61
50 9 0.08
51 36 0.31
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (48 bp):
TTATCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:51373933 original size:100 final size:100
Alignment explanation
Indices: 51373786--51373978 Score: 325
Period size: 100 Copynumber: 1.9 Consensus size: 100
51373776 TGTAGACAGG
* * *
51373786 GTTATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATACGGTACACGT
1 GTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATACGACCAATTATACGATACACGT
51373851 AGTAGCCTGCACTTAGTACTACACACGTGATCAAA
66 AGTAGCCTGCACTTAGTACTACACACGTGATCAAA
* *
51373886 GTTATCGGGTACGCATCGTAGCC-AGCACTTAGTACTACACATACGACCAATTATCCGATACACG
1 GTTATCGGGTACGCATAGTAGCCTA-CACTTAGTACTACACATACGACCAATTATACGATACACG
51373950 TAGTAGCCTGCACTTAGTACTACACACGT
65 TAGTAGCCTGCACTTAGTACTACACACGT
51373979 AACCTCACAA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
99 1 0.01
100 86 0.99
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
GTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATACGACCAATTATACGATACACGT
AGTAGCCTGCACTTAGTACTACACACGTGATCAAA
Found at i:51374146 original size:5 final size:5
Alignment explanation
Indices: 51374136--51374164 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
51374126 ATATGATAAC
51374136 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
51374165 AGAATTGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:51374269 original size:27 final size:27
Alignment explanation
Indices: 51374239--51374292 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51374229 TCATACAACC
* *
51374239 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
51374266 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
51374293 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:51376577 original size:22 final size:22
Alignment explanation
Indices: 51376552--51376598 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
51376542 TAGAGGGACT
51376552 AAATTTCTAAA-AATAAAAATAA
1 AAATTT-TAAATAATAAAAATAA
* *
51376574 AAATTTTAAATATTAAATATAA
1 AAATTTTAAATAATAAAAATAA
51376596 AAA
1 AAA
51376599 GTACTCTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATTTTAAATAATAAAAATAA
Found at i:51377297 original size:19 final size:20
Alignment explanation
Indices: 51377244--51377300 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 20
51377234 AGCTGGCCTT
51377244 TATTATGTATAATTATAATATAA
1 TATTATG-A-AATTA-AATATAA
*
51377267 TATTTAT-TAATTAAATA-AA
1 TA-TTATGAAATTAAATATAA
51377286 TATTATGAAATTAAA
1 TATTATGAAATTAAA
51377301 CTCAATGCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 4 0.13
19 11 0.37
20 4 0.13
21 5 0.17
23 2 0.07
24 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
TATTATGAAATTAAATATAA
Found at i:51377394 original size:11 final size:11
Alignment explanation
Indices: 51377378--51377408 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
51377368 GGAAGCATGC
51377378 TCTTTTTTTTT
1 TCTTTTTTTTT
51377389 TCTTTTTTTTT
1 TCTTTTTTTTT
51377400 TCTCTTTTT
1 TCT-TTTTT
51377409 GTAACTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:51377398 original size:13 final size:13
Alignment explanation
Indices: 51377380--51377408 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
51377370 AAGCATGCTC
51377380 TTTTTTTTT-TCT
1 TTTTTTTTTCTCT
51377392 TTTTTTTTTCTCT
1 TTTTTTTTTCTCT
51377405 TTTT
1 TTTT
51377409 GTAACTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTCTCT
Found at i:51378301 original size:28 final size:28
Alignment explanation
Indices: 51378264--51378321 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
51378254 AATATGTATA
51378264 AATATAATTATCTAAATGCAGTTAATAT
1 AATATAATTATCTAAATGCAGTTAATAT
51378292 AATATAATTATCTAAATGCAGTTAATAT
1 AATATAATTATCTAAATGCAGTTAATAT
51378320 AA
1 AA
51378322 CATGTTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (28 bp):
AATATAATTATCTAAATGCAGTTAATAT
Found at i:51380740 original size:3 final size:3
Alignment explanation
Indices: 51380732--51380757 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51380722 ATGTGCGCTT
51380732 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
51380758 GGTTTTTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:51382385 original size:17 final size:18
Alignment explanation
Indices: 51382353--51382386 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51382343 TTGTCCTTTT
51382353 ATATAATGATTAATAAAG
1 ATATAATGATTAATAAAG
*
51382371 ATATGATGA-TAATAAA
1 ATATAATGATTAATAAA
51382387 ATTTGAACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (18 bp):
ATATAATGATTAATAAAG
Found at i:51383035 original size:15 final size:16
Alignment explanation
Indices: 51383012--51383041 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51383002 TTAGTTAGTT
51383012 AATTAATTTTAATTTA
1 AATTAATTTTAATTTA
51383028 AATT-ATTTTAATTT
1 AATTAATTTTAATTT
51383042 GAACAGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATTAATTTTAATTTA
Found at i:51391312 original size:33 final size:32
Alignment explanation
Indices: 51391241--51391319 Score: 106
Period size: 32 Copynumber: 2.4 Consensus size: 32
51391231 TTTTCCCGTT
*
51391241 GATTTCTTCATCGCCAAACCCCCTTCCCCATC
1 GATTTCTTCATCTCCAAACCCCCTTCCCCATC
* *
51391273 GATTTCTTCATCTTCAAACCCCTCTTCCCCGTC
1 GATTTCTTCATCTCCAAACCCC-CTTCCCCATC
51391306 -ATTTTCTTCATCTC
1 GA-TTTCTTCATCTC
51391320 TGAACACTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
32 21 0.51
33 20 0.49
ACGTcount: A:0.16, C:0.42, G:0.05, T:0.37
Consensus pattern (32 bp):
GATTTCTTCATCTCCAAACCCCCTTCCCCATC
Found at i:51399201 original size:45 final size:45
Alignment explanation
Indices: 51399137--51399356 Score: 313
Period size: 45 Copynumber: 5.0 Consensus size: 45
51399127 TATCGTACAG
* *
51399137 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAGTGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
51399182 TACTATTCGGACCTTTGAGCCTAGCAGACTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
51399227 TACTATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
** *
51399272 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATATCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
51399317 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
51399357 ATGAATTCGG
Statistics
Matches: 160, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 9 0.06
43 18 0.11
44 5 0.03
45 127 0.79
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:51401075 original size:48 final size:48
Alignment explanation
Indices: 51401020--51401383 Score: 312
Period size: 48 Copynumber: 7.6 Consensus size: 48
51401010 GGGTGAATTA
* * * * *
51401020 CTGATGCCATGTTCCAAACATGGTCTTACACTAGTTCACATGTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* *
51401068 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * * * **
51401116 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGG
* * * * * *
51401164 CCGATGCTATATCCTAGACATTGTCTTACACTAG-TGCACATATCAATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATATCAAGG
* * * **
51401212 CCGAT-CCATGTCCCAGACATGGCCTTACACTGGCTCTCACA-AT-ATTG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATATCAAGG
* * * **
51401259 -TCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTA-ATATCGTGG
1 CT-GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-ACATATCAAGG
* * *
51401307 CTGATGCGATGTCCCAGACATGGTCTTACACTAGCACACATATCAATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
*
51401355 -TCGATGCCATGTCCCAAACATGGTCTTAC
1 CT-GATGCCATGTCCCAGACATGGTCTTAC
51401384 TGTAACACCC
Statistics
Matches: 254, Mismatches: 48, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
46 4 0.02
47 36 0.14
48 206 0.81
49 7 0.03
50 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
Found at i:51401281 original size:143 final size:144
Alignment explanation
Indices: 51401037--51401383 Score: 432
Period size: 143 Copynumber: 2.4 Consensus size: 144
51401027 CATGTTCCAA
* * * * *
51401037 ACATGGTCTTACACTAGTTCACATGTCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGTACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* * *
51401102 CGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTGGCC
66 CGCACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTAAT-ATCGTGGCC
* *
51401166 GATGCTATATCCTAG
130 GATGCGATATCCCAG
* * * *
51401181 ACATTGTCTTACACTAGTGCACATATCAATGCCGAT-CCATGTCCCAGACATGGCCTTACACTGG
1 ACATGGTCTTACACTAGTACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* * * *
51401245 CTCTCACA-AT-ATTGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTAATATCGTGGC
66 --CGCACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTAATATCGTGGC
* *
51401308 TGATGCGATGTCCCAG
129 CGATGCGATATCCCAG
* * *
51401324 ACATGGTCTTACACTAGCACACATATCAATGTCGATGCCATGTCCCAAACATGGTCTTAC
1 ACATGGTCTTACACTAGTACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTAC
51401384 TGTAACACCC
Statistics
Matches: 174, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
142 2 0.01
143 114 0.66
144 53 0.30
145 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (144 bp):
ACATGGTCTTACACTAGTACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
CGCACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTAATATCGTGGCCG
ATGCGATATCCCAG
Found at i:51402764 original size:27 final size:27
Alignment explanation
Indices: 51402734--51402937 Score: 257
Period size: 27 Copynumber: 7.6 Consensus size: 27
51402724 ATATTGAGTC
* * * *
51402734 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51402761 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
51402788 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
** * *
51402815 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51402842 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51402869 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51402896 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51402923 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51402938 GTACAATTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
27 155 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51410983 original size:27 final size:27
Alignment explanation
Indices: 51410953--51411156 Score: 257
Period size: 27 Copynumber: 7.6 Consensus size: 27
51410943 ATATTGAGTC
* * * *
51410953 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51410980 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
51411007 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
** * *
51411034 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51411061 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51411088 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51411115 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51411142 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51411157 GTACAATTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
27 155 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51418832 original size:40 final size:40
Alignment explanation
Indices: 51418758--51418979 Score: 385
Period size: 40 Copynumber: 5.6 Consensus size: 40
51418748 AACCCAAGTA
* *
51418758 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
51418797 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
51418837 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
51418877 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
51418917 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
51418957 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
51418980 CATTCGAATA
Statistics
Matches: 175, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 12 0.07
40 162 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:51432679 original size:104 final size:104
Alignment explanation
Indices: 51432499--51432722 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
51432489 TGTATATAAA
** * *
51432499 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
51432564 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
51432603 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
51432667 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
51432707 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
51432723 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:51432774 original size:71 final size:72
Alignment explanation
Indices: 51432641--51432792 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
51432631 TCATTGGTGG
* *
51432641 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
51432706 GAGGGGT
66 GAGGGGT
***
51432713 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
51432777 GAGGGGT
66 GAGGGGT
51432784 TGCTAAGTG
1 TGCTAAGTG
51432793 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:51438293 original size:46 final size:48
Alignment explanation
Indices: 51438186--51438455 Score: 275
Period size: 46 Copynumber: 5.7 Consensus size: 48
51438176 TTTGTGCGCT
* ** * * *
51438186 AGTGTAAGGCATGTCTGGGACATGGCATCGGTATTGAGACG-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
*
51438233 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
* *
51438279 AGTGTAAGACATGTCTGGGACAT-GTATCGGACTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
**** * *
51438325 AGTGTAAGACATGTCTGGGACATGGCATCGGTGAGGATATGTGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGT-AGAGCC
* * * *
51438374 AGTGTAAGACCGTGTCTGGGACATGGCGTCGGCCTCGA-AT-TCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGATGT--AGAGCC
51438423 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
51438456 ATTATACCCT
Statistics
Matches: 189, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
46 81 0.43
47 35 0.19
48 2 0.01
49 49 0.26
50 22 0.12
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
Found at i:51438818 original size:27 final size:26
Alignment explanation
Indices: 51438763--51438818 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 26
51438753 AACCTTAACA
* *
51438763 CTAGGGGTATATCAGTAATTTTACTC
1 CTAGGGGTAAATCAGTAATTTTACAC
*
51438789 CTAGGGGTAAATCTA-TAAATTTTCCAC
1 CTAGGGGTAAATC-AGT-AATTTTACAC
51438816 CTA
1 CTA
51438819 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (26 bp):
CTAGGGGTAAATCAGTAATTTTACAC
Done.