Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 151 of 311
Found at i:51439903 original size:16 final size:16
Alignment explanation
Indices: 51439882--51439938 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
51439872 TTTGGTTCGC
*
51439882 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
51439898 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
51439914 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
51439930 TGTAATGGA
1 TGTAATGGA
51439939 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:51440205 original size:18 final size:17
Alignment explanation
Indices: 51440184--51440218 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51440174 TTATTATTAA
*
51440184 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
51440202 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51440219 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51440355 original size:16 final size:16
Alignment explanation
Indices: 51440318--51440359 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51440308 TTAATCATAT
*
51440318 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
51440334 TT-AAATATATTATAA
1 TTAAAATATATTATAA
51440349 TTAAAATATAT
1 TTAAAATATAT
51440360 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:51440357 original size:154 final size:155
Alignment explanation
Indices: 51440071--51440383 Score: 567
Period size: 154 Copynumber: 2.0 Consensus size: 155
51440061 TAGAATACCC
51440071 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
51440136 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
51440201 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAA-AA
* *
51440228 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
51440291 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
51440356 ATATAATTTAATAAAATTCTTAAAA
131 ATATAATTTAATAAAATTCTTAAAA
51440381 TTA
1 TTA
51440384 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
153 5 0.03
154 87 0.57
155 1 0.01
157 60 0.39
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (155 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAAAA
Found at i:51440366 original size:14 final size:15
Alignment explanation
Indices: 51440327--51440368 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51440317 TTTAAACATA
*
51440327 ATTATTATTAAATAT
1 ATTATAATTAAATAT
51440342 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
51440356 A-TATAATTTAATA
1 ATTATAATTAAATA
51440369 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:51440454 original size:119 final size:120
Alignment explanation
Indices: 51440316--51440619 Score: 460
Period size: 119 Copynumber: 2.6 Consensus size: 120
51440306 ATTTAATCAT
*
51440316 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
1 ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
* * *
51440381 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
66 TTAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
51440437 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAA-A
* *
51440500 AATAAAATTCTTCTATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
65 ATTAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* *
51440556 ATTTCAA-ATAATTAATATTAAATATGATT-TAATT-AAATATATGATTTAATAAAA-T-TTAAA
1 ATTTCAACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAAA
51440616 ATTA
65 ATTA
51440620 TTATAACTAA
Statistics
Matches: 171, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
116 4 0.02
117 4 0.02
118 1 0.01
119 80 0.47
120 76 0.44
121 6 0.04
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (120 bp):
ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
TTAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:51440459 original size:154 final size:152
Alignment explanation
Indices: 51440132--51440444 Score: 371
Period size: 154 Copynumber: 2.0 Consensus size: 152
51440122 TAATAAGATT
* *
51440132 ATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATT
1 ATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATT
* * * ** * *
51440197 AAAATATATAATTTAATAAAATTCTTAATAATTAGCATAAATTTGTTTTGGTAAATTATTATTGT
66 AAAATATATAATTTAATAAAATTCTTAATAATTAACATAAATATGATTTACTAAATTAATATTGA
* * * *
51440262 TATTGTTATTTAAATTTTAATAAG
131 TACTGTTA--TAAATATAAATAAC
51440286 ATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATT
1 ATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATT
* **
51440351 AAAATATATAATTTAATAAAATTCTTAA-AATTAATATTCTTATATGAATTTACTCAAATCATAA
66 AAAATATATAATTTAATAAAATTCTTAATAATTAACA-T-AAATATG-ATTTACT-AAAT--TAA
51440415 TATATGATACTG-TA-AAATATAAATTAAC
125 TAT-TGATACTGTTATAAATATAAA-TAAC
51440443 AT
1 AT
51440445 AATTATTATT
Statistics
Matches: 135, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
153 6 0.04
154 92 0.68
155 4 0.03
156 11 0.08
157 9 0.07
159 7 0.05
160 6 0.04
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (152 bp):
ATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATT
AAAATATATAATTTAATAAAATTCTTAATAATTAACATAAATATGATTTACTAAATTAATATTGA
TACTGTTATAAATATAAATAAC
Found at i:51440485 original size:14 final size:15
Alignment explanation
Indices: 51440436--51440487 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
51440426 GTAAAATATA
51440436 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
51440451 TATTAAATATATTAT
1 AATTAAATATATTAT
51440466 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
51440479 AATTTAATA
1 AATTAAATA
51440488 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:51440502 original size:44 final size:43
Alignment explanation
Indices: 51440413--51440503 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
51440403 CTCAAATCAT
* * *
51440413 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
51440456 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
51440500 AATA
1 AATA
51440504 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:51440592 original size:15 final size:15
Alignment explanation
Indices: 51440572--51440610 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
51440562 AATAATTAAT
51440572 ATTAAATATGATTTA
1 ATTAAATATGATTTA
51440587 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
51440604 ATAAAAT
1 ATTAAAT
51440611 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:51440597 original size:17 final size:17
Alignment explanation
Indices: 51440577--51440610 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51440567 TTAATATTAA
*
51440577 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
51440594 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
51440611 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:51440753 original size:93 final size:91
Alignment explanation
Indices: 51440643--51440836 Score: 284
Period size: 93 Copynumber: 2.1 Consensus size: 91
51440633 GATTATAGTT
* * *
51440643 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA-TAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAA-TT-ATAAGTAATATATAATTTC
* *
51440706 ATAAAATTCTTGATAATAAAAATTTTCTTA
63 ATAAAATTCTTAATAAT-AAAATGTTCTTA
*
51440736 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATAAGTGATATATAATTTCATA
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATAAGTAATATATAATTTCATA
51440801 AAATTCTTAATAATAAAATGTTCTTA
66 AAATTCTTAATAATAAAATGTTCTTA
51440827 TATGAATTTA
1 TATGAATTTA
51440837 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 25 0.27
92 31 0.33
93 34 0.37
94 3 0.03
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (91 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATAAGTAATATATAATTTCATA
AAATTCTTAATAATAAAATGTTCTTA
Found at i:51450914 original size:79 final size:81
Alignment explanation
Indices: 51450814--51450998 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
51450804 GCTACACGTT
* * *
51450814 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51450877 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
51450894 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
51450958 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
51450974 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51450999 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51450998 original size:40 final size:40
Alignment explanation
Indices: 51450814--51450998 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
51450804 GCTACACGTT
* * *
51450814 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51450854 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51450894 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
51450933 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51450974 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51450999 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51458973 original size:79 final size:82
Alignment explanation
Indices: 51458862--51459046 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
51458852 GCTACTCGTT
* *
51458862 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51458925 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
51458942 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
51459005 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51459022 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51459047 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51459046 original size:40 final size:40
Alignment explanation
Indices: 51458843--51459046 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
51458833 CGGAATTTAA
** *
51458843 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51458883 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51458923 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51458962 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51459002 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51459042 CCGGA
1 CCGGA
51459047 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51472338 original size:71 final size:71
Alignment explanation
Indices: 51472222--51472354 Score: 248
Period size: 71 Copynumber: 1.9 Consensus size: 71
51472212 TTTGTAATCT
*
51472222 GAGGTAAGTTGTATGTAAATAATACAACTACATTGTTATTGTATGTGTTTGAATTGATATAGTTC
1 GAGGTAAGTTGTATGTAAATAATACAACTACATTGTTATTATATGTGTTTGAATTGATATAGTTC
51472287 TAATTC
66 TAATTC
*
51472293 GAGGTAAGTTGTTTGTAAATAATACAACTACATTGTTATTATATGTGTTTGAATTGATATAG
1 GAGGTAAGTTGTATGTAAATAATACAACTACATTGTTATTATATGTGTTTGAATTGATATAG
51472355 CATAAATTGC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (71 bp):
GAGGTAAGTTGTATGTAAATAATACAACTACATTGTTATTATATGTGTTTGAATTGATATAGTTC
TAATTC
Found at i:51472516 original size:48 final size:48
Alignment explanation
Indices: 51472474--51472644 Score: 141
Period size: 47 Copynumber: 3.7 Consensus size: 48
51472464 TTATTTGTAC
51472474 GCTAGTGTAAGA-CATCTCTGGGACAT-GCATCAGCTACATTATTAAA
1 GCTAGTGTAAGACCATCTCTGGGACATGGCATCAGCTACATTATTAAA
* **
51472520 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG---CATTGAGACAAGA
1 GCTAGTGTAAGACCATCTCTGGGACATGGCATCAGCTACATT-A-TTAA-A
* * *
51472568 GCTAGTGTAAGA-CATGTCTGGGACAT-GCACCAGCTACGA-GATGT---
1 GCTAGTGTAAGACCATCTCTGGGACATGGCATCAGCTAC-ATTAT-TAAA
*
51472612 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGACCATCTCTGGGACATGGCATC
51472645 GGTGTGGATA
Statistics
Matches: 104, Mismatches: 8, Indels: 26
0.75 0.06 0.19
Matches are distributed among these distances:
43 1 0.01
44 10 0.10
45 18 0.17
46 23 0.22
47 29 0.28
48 21 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATCTCTGGGACATGGCATCAGCTACATTATTAAA
Found at i:51472669 original size:94 final size:92
Alignment explanation
Indices: 51472475--51472644 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
51472465 TATTTGTACG
* *
51472475 CTAGTGTAAGACATCTCTGGGACATGCATCAGCTACATTATTAAAGCTAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATCTCTGGGACATGCACCAGCTACATGATT--AGCTAGTGTAAGACCATGTCT
* *
51472540 GGGACATGGCATCAGCATTGAGACAAGAG
64 GGGACATGGCATCAGCATGGAGACAAGAA
*
51472569 CTAGTGTAAGACATGTCTGGGACATGCACCAGCTACGA-GATGT-G-TCAGTGTAAGACCATGTC
1 CTAGTGTAAGACATCTCTGGGACATGCACCAGCTAC-ATGAT-TAGCT-AGTGTAAGACCATGTC
51472631 TGGGACATGGCATC
63 TGGGACATGGCATC
51472645 GGTGTGGATA
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
91 1 0.01
92 31 0.44
94 36 0.51
95 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (92 bp):
CTAGTGTAAGACATCTCTGGGACATGCACCAGCTACATGATTAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATGGAGACAAGAA
Found at i:51473924 original size:21 final size:20
Alignment explanation
Indices: 51473900--51473939 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
51473890 GTTATAATGA
51473900 CCACACGGGGGTGTTGCCCTT
1 CCACACGGGGGTG-TGCCCTT
*
51473921 CCACACGGGTGTGTGCCCT
1 CCACACGGGGGTGTGCCCT
51473940 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.35, G:0.33, T:0.23
Consensus pattern (20 bp):
CCACACGGGGGTGTGCCCTT
Found at i:51475122 original size:18 final size:19
Alignment explanation
Indices: 51475078--51475122 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
51475068 GGCATCAATT
*
51475078 TCACATTTTATATATAAAA
1 TCACATTTTATATAAAAAA
*
51475097 TAAC-TTTTAT-TAAAAAA
1 TCACATTTTATATAAAAAA
51475114 TCACATTTT
1 TCACATTTT
51475123 TACATTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 9 0.41
18 10 0.45
19 3 0.14
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACATTTTATATAAAAAA
Found at i:51480631 original size:16 final size:16
Alignment explanation
Indices: 51480610--51480642 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51480600 GCCGGCCACC
51480610 CAGTGTGTACAACCCT
1 CAGTGTGTACAACCCT
51480626 CAGTGTGTACAACCCT
1 CAGTGTGTACAACCCT
51480642 C
1 C
51480643 GAACCTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (16 bp):
CAGTGTGTACAACCCT
Found at i:51488000 original size:52 final size:51
Alignment explanation
Indices: 51487877--51488024 Score: 228
Period size: 52 Copynumber: 2.9 Consensus size: 51
51487867 ACTAGTGACT
*
51487877 CAAGTGTGGCACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGCACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
*
51487926 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGCACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * *
51487978 CAAGTGTGACACTATGTTAAGGCCACTTTGTGAAGAAGGTAGCTTTG
1 CAAGTGTGGCACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTG
51488025 ACTACAAGGG
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
49 33 0.37
51 18 0.20
52 39 0.43
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGCACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:51492847 original size:79 final size:81
Alignment explanation
Indices: 51492738--51492920 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
51492728 TACTCGTTCA
* *
51492738 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
51492801 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
51492818 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
51492881 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
51492897 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51492921 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:51492920 original size:40 final size:40
Alignment explanation
Indices: 51492717--51492920 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
51492707 CGGAATTTAA
** *
51492717 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51492757 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51492797 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51492836 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51492876 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51492916 CCGGA
1 CCGGA
51492921 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51493570 original size:37 final size:37
Alignment explanation
Indices: 51493520--51493607 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
51493510 AGGCTACCTA
51493520 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
51493557 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
51493594 TGGCCGAACATACA
1 TGGCCGAACATACA
51493608 TGTCTATGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:51494250 original size:23 final size:24
Alignment explanation
Indices: 51494198--51494255 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
51494188 AAAGGATGGA
*
51494198 CACATTTT-TTTTTCTTTTGTTTT
1 CACATTTTCTTTCTCTTTTGTTTT
*
51494221 CATCATTTTCTTTCTCTTTTTTTTT
1 CA-CATTTTCTTTCTCTTTTGTTTT
51494246 C-CA-TTTCTTT
1 CACATTTTCTTT
51494256 ATTACTAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 7 0.23
23 4 0.13
24 6 0.19
25 14 0.45
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.71
Consensus pattern (24 bp):
CACATTTTCTTTCTCTTTTGTTTT
Found at i:51498969 original size:20 final size:20
Alignment explanation
Indices: 51498940--51498985 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
51498930 AGCATATGTA
* * *
51498940 TTCATAAAATTTAAGAATTT
1 TTCATTAAATTTAACAACTT
*
51498960 TTCATTAAATTTTACAACTT
1 TTCATTAAATTTAACAACTT
51498980 TTCATT
1 TTCATT
51498986 TTAGTCCTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.11, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATTAAATTTAACAACTT
Found at i:51499624 original size:20 final size:20
Alignment explanation
Indices: 51499583--51499627 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
51499573 AGCACATGTA
* *
51499583 TTCATAAAATTTAAGAATTT
1 TTCATAAAATTTAACAACTT
51499603 TTCATCAAAATTT-ACAACTT
1 TTCAT-AAAATTTAACAACTT
51499623 TTCAT
1 TTCAT
51499628 TTTTTTCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.44
Consensus pattern (20 bp):
TTCATAAAATTTAACAACTT
Found at i:51499872 original size:643 final size:643
Alignment explanation
Indices: 51498647--51499919 Score: 2043
Period size: 643 Copynumber: 2.0 Consensus size: 643
51498637 AAGTTACACT
** *
51498647 AACTTACCTCGACAATTGTTCGTGTAAAAAGTCTACTAATCCGAAACCTTTTCTTTTCCTTGATC
1 AACTTACCTCGACAATTGTTCACGTAAAAAGTCTACTAATCCGAAACCTTTTCTTTTCCTTAATC
*
51498712 TAACCTCGAATTAGTGATCTCCAGATCTATATAAATGAATTTAACCATCAATTTCGCACATTTCA
66 TAACCTCGAATTAGTGATCTCCAGATCTATATAAATGAATTTAACCATCAATTTCACACATTTCA
* *
51498777 TATTTAAATGGACTCAATTTACGTTCTAGGCAAAATTACCATTTTGCCTCTAACTTTTCCATAAA
131 TATTTAAATGGACTCAATTTACGTCCTAGGCAAAATTACCATTTTGCCCCTAACTTTTCCATAAA
* * * *
51498842 TTTTGATTTTGTCCCTAGGCCCAGAAACGAAACTTCTACAAATTACTCCCTATTCTAAGCCTAAC
196 ATCTGATTTTGTCCCTAGGCCCAAAAACGAAACTTCTACAAATTACTCCCTATTCCAAGCCTAAC
* * *
51498907 CAAAGCCCCATTACAAATTTTCCAGCATATGTATTCATAAAATTTAAGAATTTTTCATTAAATTT
261 CAAAGCCCCATTACAAATTTTCCAGCACATGTATTCATAAAATTTAAGAATTTTTCATCAAAATT
* * *
51498972 TACAACTTTTCATTTTAGTCCTTAAATCATGTTTTCATCAAAAATCACTTTGTGAAAGTTGTTTA
326 TACAACTTTTCATTTTAGTCCCTAAATCATGTTTTCATCAAAAATCACTTTATAAAAGTTGTTTA
* * **
51499037 TCTTTAAACAATCTTTCATTTTCTACCATAAATTTCTAATTTCCAGCATATACATCCATGACGTA
391 TCTATAAACAATCTTTCATTTTCTACCATAAATTTCTAATTTCCAGCATATACATCCATCACCCA
*
51499102 TTTTTCATACCCTGATAACTTTTCAAATTAATCCCTCAAATAGAGAGATTAAGCTATCCCGGTTT
456 TTTTTCATACCCTGATAACTTTTCAAATTAATCCCTCAAATAGAGAGATTAAGCTATCCCGATTT
*
51499167 TAAAAATACCAAAAATACTAAAAACGAGACAAGGAAAATAACCCAATTAGGCCTTGAAAGTTTCT
521 GAAAAATACCAAAAATACTAAAAACGAGACAAGGAAAATAACCCAATTAGGCCTTGAAAGTTTCT
** *
51499232 TTTCTCTCTACTAAGGTTTCCAT-GTGTTTTAGGTTGCAGATGACGTAAAATAACATG
586 TTTCTCTCTACTAAGGTTTCCATAGAATTTTAGGTTGAAGATGACGTAAAATAACATG
* *
51499289 AACTTACCTTGACACTTGTTCACGTAAAAAGTCTACTAATCCGAAACCTTTTCTTTTCCTTAATC
1 AACTTACCTCGACAATTGTTCACGTAAAAAGTCTACTAATCCGAAACCTTTTCTTTTCCTTAATC
* * *
51499354 TAACCTCGAATTAGTGTTGTCC-GAATCTATATAAATGAATTTAACCATCAATTTCACACATTTG
66 TAACCTCGAATTAGTGATCTCCAG-ATCTATATAAATGAATTTAACCATCAATTTCACACATTTC
*
51499418 ATATTTAAATGGACTCAATTTATGTCCTAGG-AATAATTACCATTTTGCCCCTAACTTTTCCATA
130 ATATTTAAATGGACTCAATTTACGTCCTAGGCAA-AATTACCATTTTGCCCCTAACTTTTCCATA
* * * *
51499482 AAATCTGATTTTGTCCCTAGGCCCAAAAAATGAAACTTGTGCAAATTACTCCCTATTCCAAGTCT
194 AAATCTGATTTTGTCCCTAGGCCC-AAAAACGAAACTTCTACAAATTACTCCCTATTCCAAGCCT
51499547 AACCAAAGCCCCATTACAAATTTTCCAGCACATGTATTCATAAAATTTAAGAATTTTTCATCAAA
258 AACCAAAGCCCCATTACAAATTTTCCAGCACATGTATTCATAAAATTTAAGAATTTTTCATCAAA
**
51499612 ATTTACAACTTTTCATTTTTTTCCCTAAATCATGTTTTCATCAAAAAATCACTTTATAAAAGTTG
323 ATTTACAACTTTTCATTTTAGTCCCTAAATCATGTTTTCATC-AAAAATCACTTTATAAAAGTTG
* *
51499677 TTTATCTATCAATAATCTTTCATTTTCTACCATAAATTTCTAATTTCCAGCATATACATCCATCA
387 TTTATCTATAAACAATCTTTCATTTTCTACCATAAATTTCTAATTTCCAGCATATACATCCATCA
*
51499742 CCCA-TTTTCATACCTTGATAACTTTTCAAATTAATCCCTCAAATAGAGAGATTAAGCTATCCCG
452 CCCATTTTTCATACCCTGATAACTTTTCAAATTAATCCCTCAAATAGAGAGATTAAGCTATCCCG
* * * * *
51499806 ATTTGAAAAATACCAATATTACTAAAAACGGGACAA-GAGAACTTACCCAATTAGGCCTTGAAAG
517 ATTTGAAAAATACCAAAAATACTAAAAACGAGACAAGGA-AAATAACCCAATTAGGCCTTGAAAG
* *
51499870 TTTCTTTTCTCTCTCCTAGGGTTTCCATAGAATTTTAGGTTGAAGATGAC
581 TTTCTTTTCTCTCTACTAAGGTTTCCATAGAATTTTAGGTTGAAGATGAC
51499920 AATAATAAGA
Statistics
Matches: 578, Mismatches: 47, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
641 3 0.01
642 200 0.35
643 274 0.47
644 101 0.17
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.36
Consensus pattern (643 bp):
AACTTACCTCGACAATTGTTCACGTAAAAAGTCTACTAATCCGAAACCTTTTCTTTTCCTTAATC
TAACCTCGAATTAGTGATCTCCAGATCTATATAAATGAATTTAACCATCAATTTCACACATTTCA
TATTTAAATGGACTCAATTTACGTCCTAGGCAAAATTACCATTTTGCCCCTAACTTTTCCATAAA
ATCTGATTTTGTCCCTAGGCCCAAAAACGAAACTTCTACAAATTACTCCCTATTCCAAGCCTAAC
CAAAGCCCCATTACAAATTTTCCAGCACATGTATTCATAAAATTTAAGAATTTTTCATCAAAATT
TACAACTTTTCATTTTAGTCCCTAAATCATGTTTTCATCAAAAATCACTTTATAAAAGTTGTTTA
TCTATAAACAATCTTTCATTTTCTACCATAAATTTCTAATTTCCAGCATATACATCCATCACCCA
TTTTTCATACCCTGATAACTTTTCAAATTAATCCCTCAAATAGAGAGATTAAGCTATCCCGATTT
GAAAAATACCAAAAATACTAAAAACGAGACAAGGAAAATAACCCAATTAGGCCTTGAAAGTTTCT
TTTCTCTCTACTAAGGTTTCCATAGAATTTTAGGTTGAAGATGACGTAAAATAACATG
Found at i:51502409 original size:26 final size:26
Alignment explanation
Indices: 51502380--51502430 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
51502370 AGATATCGAA
* *
51502380 GATGTTCCTGATACTAACTCGATAGT
1 GATGTTCCCGATACTAACTCAATAGT
51502406 GATGTTCCCGATACTAACTCAATAG
1 GATGTTCCCGATACTAACTCAATAG
51502431 CGAACTCGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
GATGTTCCCGATACTAACTCAATAGT
Found at i:51505611 original size:17 final size:19
Alignment explanation
Indices: 51505570--51505613 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
51505560 TAAAGTGTTT
*
51505570 TTTGAAAACCCTGTTTTCA
1 TTTGAAAACCCTGTCTTCA
51505589 -TTGAAAACCCT-TCTT-A
1 TTTGAAAACCCTGTCTTCA
51505605 TTTGAAAAC
1 TTTGAAAAC
51505614 TTGAGTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 11 0.48
18 11 0.48
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (19 bp):
TTTGAAAACCCTGTCTTCA
Found at i:51506905 original size:41 final size:41
Alignment explanation
Indices: 51506845--51506965 Score: 170
Period size: 41 Copynumber: 3.0 Consensus size: 41
51506835 AAAGCCAGCA
*
51506845 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCG
* * * *
51506886 GTGGATCCACGATCGTCAAGCAACTATGCAATCCTCAATCG
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCG
* * *
51506927 GTGGATCTACGGTCATCAAGAAACCATGTGATCCTCAAT
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
51506966 TTCTTCCTCC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (41 bp):
GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCG
Found at i:51507246 original size:27 final size:26
Alignment explanation
Indices: 51507203--51507267 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
51507193 TTTCACCCTA
*
51507203 CAAGGGTGTTTTCGTAAATGTACAAAC
1 CAAGGGT-ATTTCGTAAATGTACAAAC
* * *
51507230 CAAGGGTATTTCGGTAATTTTGCAAAC
1 CAAGGGTATTTC-GTAAATGTACAAAC
*
51507257 CAATGGTATTT
1 CAAGGGTATTT
51507268 TTGTAAGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.34
Consensus pattern (26 bp):
CAAGGGTATTTCGTAAATGTACAAAC
Found at i:51507273 original size:27 final size:27
Alignment explanation
Indices: 51507225--51507429 Score: 135
Period size: 27 Copynumber: 7.6 Consensus size: 27
51507215 CGTAAATGTA
51507225 CAAACCAAGGGTATTTCGGTAATTTTG
1 CAAACCAAGGGTATTTCGGTAATTTTG
* **
51507252 CAAACCAATGGTATTTTTGTAAGTTTTG
1 CAAACCAAGGGTATTTCGGTAA-TTTTG
* * * * *
51507280 -AAAGTCAATGGTACTTCTGTAATTTTA
1 CAAA-CCAAGGGTATTTCGGTAATTTTG
* ** * * *
51507307 TAAATTAGGGGTATTTCTGTAATTTTC
1 CAAACCAAGGGTATTTCGGTAATTTTG
* * *
51507334 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAACCAAGGGTATTTCGGTAATTTTG
* *** *
51507361 CTAATTGAGGGTATTTTGGTAATTTTG
1 CAAACCAAGGGTATTTCGGTAATTTTG
* * * *
51507388 TAAACCAATGGTA-TTCAGCAATTTTG
1 CAAACCAAGGGTATTTCGGTAATTTTG
*
51507414 TAAACCAAGGGTATTT
1 CAAACCAAGGGTATTT
51507430 TAGTAATTCT
Statistics
Matches: 142, Mismatches: 32, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 22 0.15
27 97 0.68
28 23 0.16
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAACCAAGGGTATTTCGGTAATTTTG
Found at i:51507456 original size:27 final size:25
Alignment explanation
Indices: 51507421--51507501 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 25
51507411 TTGTAAACCA
51507421 AGGGTATTTTAGTAATTCTACCCTAC
1 AGGG-ATTTTAGTAATTCTACCCTAC
* *
51507447 AGAGGCATTTCAGTAATTCTATCCTAC
1 AG-GG-ATTTTAGTAATTCTACCCTAC
* *
51507474 AGGGATATTTCAGTAATACTAGCCTAC
1 AGGGAT-TTT-AGTAATTCTACCCTAC
51507501 A
1 A
51507502 AATATGAGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
25 2 0.04
26 6 0.13
27 38 0.83
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (25 bp):
AGGGATTTTAGTAATTCTACCCTAC
Found at i:51528038 original size:20 final size:20
Alignment explanation
Indices: 51528000--51528047 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
51527990 TAAATTCTAA
* **
51528000 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
51528020 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
51528040 AAA-ATAAA
1 AAAGATAAA
51528048 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:51528072 original size:27 final size:26
Alignment explanation
Indices: 51528042--51528104 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
51528032 AGATAATTAA
51528042 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
51528069 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
51528096 AATATAAAT
1 AATA-AAAT
51528105 AAAATGGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:51528091 original size:15 final size:15
Alignment explanation
Indices: 51528071--51528100 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51528061 ATAATCCTAA
*
51528071 TAATTATCTTAATAT
1 TAATTATCCTAATAT
51528086 TAATTATCCTAATAT
1 TAATTATCCTAATAT
51528101 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:51529556 original size:6 final size:6
Alignment explanation
Indices: 51529512--51529587 Score: 61
Period size: 6 Copynumber: 12.8 Consensus size: 6
51529502 TTAATATTTG
* * *
51529512 AAAATA ATAAATAA GAAAATA ATAAGA AAAA-A TAAATA AAAAT- AAAAT-
1 AAAATA A-AAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
51529560 AAACT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT
51529588 TTGGTTGTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
5 17 0.29
6 30 0.52
7 5 0.09
8 5 0.09
9 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:51529559 original size:11 final size:11
Alignment explanation
Indices: 51529512--51529587 Score: 70
Period size: 10 Copynumber: 7.0 Consensus size: 11
51529502 TTAATATTTG
51529512 AAAATAATAAAT
1 AAAATAA-AAAT
*
51529524 AAGAA-AATAAT
1 AA-AATAAAAAT
*
51529535 AAGA-AAAAAT
1 AAAATAAAAAT
51529545 -AAATAAAAAT
1 AAAATAAAAAT
*
51529555 AAAAT-AAACT
1 AAAATAAAAAT
51529565 AAAATAAAAAT
1 AAAATAAAAAT
51529576 AAAAATAAAAAT
1 -AAAATAAAAAT
51529588 TTGGTTGTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.04
10 21 0.40
11 13 0.25
12 15 0.28
13 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:51529560 original size:25 final size:25
Alignment explanation
Indices: 51529511--51529585 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 25
51529501 ATTAATATTT
*
51529511 GAAAATAATAAATAAGAAA-ATAATAA
1 GAAAA-AATAAATAA-AAATAAAATAA
51529537 GAAAAAATAAATAAAAATAAAATAA
1 GAAAAAATAAATAAAAATAAAATAA
*
51529562 -ACTAAAATAAAAATAAAAATAAAA
1 GA--AAAA-ATAAATAAAAATAAAA
51529586 ATTTGGTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
24 4 0.09
25 15 0.35
26 9 0.21
27 15 0.35
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (25 bp):
GAAAAAATAAATAAAAATAAAATAA
Found at i:51529562 original size:15 final size:15
Alignment explanation
Indices: 51529512--51529585 Score: 63
Period size: 15 Copynumber: 5.3 Consensus size: 15
51529502 TTAATATTTG
*
51529512 AAAAT-AATAAATAAG
1 AAAATAAATAAA-AAT
*
51529527 AAAAT-AATAAGAA-
1 AAAATAAATAAAAAT
51529540 AAAATAAATAAAAAT
1 AAAATAAATAAAAAT
51529555 AAAATAAACT-AAAAT
1 AAAATAAA-TAAAAAT
51529570 --AA-AAATAAAAAT
1 AAAATAAATAAAAAT
51529582 AAAA
1 AAAA
51529586 ATTTGGTTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
11 1 0.02
12 8 0.16
13 7 0.14
14 11 0.22
15 23 0.45
16 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAATAAATAAAAAT
Found at i:51533339 original size:27 final size:26
Alignment explanation
Indices: 51533309--51533371 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
51533299 AGATAATTAA
51533309 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
51533336 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
51533363 AATATAAAT
1 AATA-AAAT
51533372 AAAATAGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:51533358 original size:15 final size:15
Alignment explanation
Indices: 51533338--51533367 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51533328 ATAATCCTAA
*
51533338 TAATTATCTTAATAT
1 TAATTATCCTAATAT
51533353 TAATTATCCTAATAT
1 TAATTATCCTAATAT
51533368 AAATAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:51533779 original size:29 final size:29
Alignment explanation
Indices: 51533747--51533805 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
51533737 AAGTCTACAT
* *
51533747 ACATGCTTATGGCCCA-CTAGGCCCAAATC
1 ACATGCATATGACCCATCT-GGCCCAAATC
* *
51533776 ACATTCATATGACCCATCTGGCCCGAATC
1 ACATGCATATGACCCATCTGGCCCAAATC
51533805 A
1 A
51533806 ATTACAAGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.22
Consensus pattern (29 bp):
ACATGCATATGACCCATCTGGCCCAAATC
Found at i:51545423 original size:46 final size:46
Alignment explanation
Indices: 51545373--51545545 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
51545363 TGGTTGAGCA
*
51545373 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
51545419 TCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
51545466 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51545512 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51545546 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51545538 original size:93 final size:93
Alignment explanation
Indices: 51545370--51545540 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
51545360 GGATGGTTGA
* *
51545370 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
51545435 TAAGTCCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
* * *
51545463 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
* *
51545528 TGAGTTCGAGTTC
66 TAAGTCCGAGTTC
51545541 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51556159 original size:46 final size:46
Alignment explanation
Indices: 51556109--51556280 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
51556099 TGGTTGAGCA
51556109 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
51556155 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT-G
* * * *
51556199 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
51556247 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51556281 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 2 0.02
46 86 0.81
47 2 0.02
48 2 0.02
49 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:51556268 original size:92 final size:93
Alignment explanation
Indices: 51556106--51556275 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
51556096 GGATGGTTGA
* *
51556106 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
51556171 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
51556199 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
51556263 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51556276 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 68 0.94
93 4 0.06
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51562823 original size:23 final size:23
Alignment explanation
Indices: 51562775--51562824 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
51562765 TAATTTAACA
*
51562775 TAAATATGAAATTTATTAAAACT
1 TAAATATGAAATATATTAAAACT
51562798 TAAATATG-AATATAATATAAAA-T
1 TAAATATGAAATAT-AT-TAAAACT
51562821 TAAA
1 TAAA
51562825 CATGGTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 4 0.17
23 15 0.62
24 5 0.21
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
TAAATATGAAATATATTAAAACT
Found at i:51571079 original size:47 final size:47
Alignment explanation
Indices: 51570999--51571140 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
51570989 GTTGAATTTA
* * *
51570999 AAGCTTGATAAA-TTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTT
51571045 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTT
*
51571092 AAGCTTGTTAAATTTGCCCTTATTATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTT
51571139 AA
1 AA
51571141 AGAAAATTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 11 0.12
47 80 0.88
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTT
Found at i:51578892 original size:47 final size:47
Alignment explanation
Indices: 51578811--51578952 Score: 223
Period size: 47 Copynumber: 3.0 Consensus size: 47
51578801 GTTGAATTTA
* *
51578811 AAGCTTGTTAAA-TTGCTCTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
* *
51578857 AAGCTTGTTAAATTTTCCCTTAAGATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
* *
51578904 AAGCTTGTTAAATTTGCCCTTATTATTTCCGAATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
51578951 AA
1 AA
51578953 AGAAAATTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 12 0.14
47 75 0.86
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:51579819 original size:45 final size:45
Alignment explanation
Indices: 51579758--51580109 Score: 507
Period size: 45 Copynumber: 7.9 Consensus size: 45
51579748 CGCACAGTAT
*
51579758 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
51579803 TATTCGGGCCTTTGAGCCTAGCAGGCTGTAACGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
51579848 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATACCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
51579893 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGAGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
51579938 TATTCGGGTCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
51579983 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
51580028 TATCCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
51580073 TA-TCGGG-CTTCGAGCCTAGCAGGC-AAAATGCTGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
51580110 ATGAATTCAG
Statistics
Matches: 280, Mismatches: 25, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
42 11 0.04
43 13 0.05
44 10 0.04
45 245 0.88
46 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:51582431 original size:27 final size:27
Alignment explanation
Indices: 51582386--51582448 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
51582376 GTCTAAAATA
* ** * *
51582386 AATGCCTCTGTGGTGCACTTTGAAAGG
1 AATGCCTTTGTGGCACACTCTGAAACG
51582413 AATGCCTTTGTGGCACACTCTGAAACG
1 AATGCCTTTGTGGCACACTCTGAAACG
*
51582440 AATACCTTT
1 AATGCCTTT
51582449 TTGGTAAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (27 bp):
AATGCCTTTGTGGCACACTCTGAAACG
Found at i:51586599 original size:6 final size:6
Alignment explanation
Indices: 51586588--51586615 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
51586578 AGGATTGCCA
51586588 ATTTCC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTT
51586616 TTTTTCCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.00, T:0.54
Consensus pattern (6 bp):
ATTTCC
Found at i:51594741 original size:119 final size:119
Alignment explanation
Indices: 51594530--51594765 Score: 391
Period size: 119 Copynumber: 2.0 Consensus size: 119
51594520 GATATTGCTG
* * *
51594530 TCTCATAGCATCTTCAGGCTCCCATGTGGCCTCTTCAATACAGTGTCGATGCCACATCACTTTCA
1 TCTCATAGCATATTCAGGCTCCCACGTGGCCTCTTCAATACAGTGCCGATGCCACATCACTTTCA
* * **
51594595 CTAACAGAATTCTCTTATTTCTTAGTTCTTTAACTTTGCGAGCTAAGATACGGA
66 ATAACAGAATTCTCGTATTTCTTAGTTCTTTAACTTCACGAGCTAAGATACGGA
51594649 TCTCATAGCATATTCAGGCTCCCACGTGGCCTCTTCAATACAGTGCCGATGCCACATCACTTTCA
1 TCTCATAGCATATTCAGGCTCCCACGTGGCCTCTTCAATACAGTGCCGATGCCACATCACTTTCA
* *
51594714 ATAATAGAATTCTCGTATTTCTTAGTTCTTTAACTTCATGAGCTAAGATACG
66 ATAACAGAATTCTCGTATTTCTTAGTTCTTTAACTTCACGAGCTAAGATACG
51594766 TATCGGTTCT
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 108 1.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (119 bp):
TCTCATAGCATATTCAGGCTCCCACGTGGCCTCTTCAATACAGTGCCGATGCCACATCACTTTCA
ATAACAGAATTCTCGTATTTCTTAGTTCTTTAACTTCACGAGCTAAGATACGGA
Found at i:51599342 original size:18 final size:20
Alignment explanation
Indices: 51599306--51599352 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
51599296 TTGTAAGTGT
51599306 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
51599326 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
51599345 ATGATATA
1 AT-ATATA
51599353 ACAAGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:51599881 original size:101 final size:98
Alignment explanation
Indices: 51599706--51600094 Score: 345
Period size: 101 Copynumber: 3.9 Consensus size: 98
51599696 TATAAGTCAT
* * *
51599706 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATTGATAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCGCATGTGTAGTACTAAG
* * *
51599771 TGCAAGCTACTATGTGTACCTGTTAACTTCGATCAC
66 TGCAGGCTACTACGTGTACCAGTT-A-TT-GATCAC
* * * * ** *
51599807 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTTTCGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCGCATGTGTAGTACTAAG
* * *
51599872 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGC
66 TGCAGGCTACTACGTGTACCAG-TT-ATTGATCAC
* * * * * *
51599907 ATGTGTAGTACTAAGTGTAGGCTACT--ATGCATACCTG-TTGACTTCAA-TCACGTGTGTAGTA
1 GTGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATGGA--T-AAGTCGCATGTGTAGTA
* * ** *
51599968 CTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCAC
61 CTAAGTGCAGGCTACTACGTGTACCAG-TTATTGA-TCAC
* * *
51600008 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGATAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCGCATGTGTAGTACTAAG
* * *
51600073 TGTAGGCTACTATGCGTACCAG
66 TGCAGGCTACTACGTGTACCAG
51600095 ATAGCTTCGG
Statistics
Matches: 235, Mismatches: 42, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
98 2 0.01
99 3 0.01
100 71 0.30
101 147 0.63
102 9 0.04
103 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCGCATGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGTTATTGATCAC
Found at i:51599972 original size:151 final size:151
Alignment explanation
Indices: 51599698--51600092 Score: 682
Period size: 151 Copynumber: 2.6 Consensus size: 151
51599688 TGATCCATTA
* *
51599698 TAAGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATTGATAGGTCGCATGTGTA
1 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTA
* * * *
51599763 GTACTAAGTGCAAGCTACTATGTGTACCTGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGG
66 GTACTAAGTGTAGGCTACTATGCGTACCTGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGG
51599828 CTACTACGTGTATCAGATGGT
131 CTACTACGTGTATCAGATGGT
** *
51599849 TAAGTTTCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTA
1 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTA
* *
51599914 GTACTAAGTGTAGGCTACTATGCATACCTGTTGACTTCAATCACGTGTGTAGTACTAAGTGTAGG
66 GTACTAAGTGTAGGCTACTATGCGTACCTGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGG
51599979 CTACTACGTGTATCAGATGGT
131 CTACTACGTGTATCAGATGGT
*
51600000 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGATAGGTCGCATGTGTA
1 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTA
51600065 GTACTAAGTGTAGGCTACTATGCGTACC
66 GTACTAAGTGTAGGCTACTATGCGTACC
51600093 AGATAGCTTC
Statistics
Matches: 228, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 228 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (151 bp):
TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTA
GTACTAAGTGTAGGCTACTATGCGTACCTGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGG
CTACTACGTGTATCAGATGGT
Found at i:51600092 original size:50 final size:50
Alignment explanation
Indices: 51599701--51600096 Score: 384
Period size: 50 Copynumber: 7.9 Consensus size: 50
51599691 TCCATTATAA
* * *
51599701 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
51599751 GTCGCATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCTG-TTAACTTCG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * *
51599802 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
**
51599852 GTTTCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * ** *
51599902 GTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCTG-TTGACTTCA-
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--T-AG
* * * * * *
51599953 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
51600003 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
51600053 GTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAT
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
51600097 AGCTTCGGTT
Statistics
Matches: 274, Mismatches: 64, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
49 8 0.03
50 191 0.70
51 71 0.26
52 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:51600316 original size:16 final size:16
Alignment explanation
Indices: 51600295--51600326 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51600285 AGAATGGAGT
51600295 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
51600311 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
51600327 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:51606324 original size:28 final size:27
Alignment explanation
Indices: 51606288--51606516 Score: 112
Period size: 27 Copynumber: 8.5 Consensus size: 27
51606278 AAGGGCAAAA
* *
51606288 CAGTCATTTTACCCTACAAGGGATATTT
1 CAGTAATTTTACACTACAA-GGATATTT
*
51606316 CAGTAATTTTACACTACAATGG-TACTT
1 CAGTAATTTTACACTACAA-GGATATTT
* *
51606343 CGGTAATTGTACACTACAAGGATATTT
1 CAGTAATTTTACACTACAAGGATATTT
* * * *
51606370 CAGTAATTTCACA-AACCAGGGGTATTT
1 CAGTAATTTTACACTA-CAAGGATATTT
* * *
51606397 -AGTTAATTTTACAAT-CTGAGGATACTT
1 CAG-TAATTTTACACTAC-AAGGATATTT
* * ** * *
51606424 CGGTAATTTTACAATTTAGGGGTATTT
1 CAGTAATTTTACACTACAAGGATATTT
* * * * *
51606451 CGGTAATTTTAAAAT-CGAGGGTATTT
1 CAGTAATTTTACACTACAAGGATATTT
* * *
51606477 CA-TCAATTTTACA-AATCGAGGGTATTT
1 CAGT-AATTTTACACTA-CAAGGATATTT
51606504 CAGTAATTTTACA
1 CAGTAATTTTACA
51606517 AATCGGGGGT
Statistics
Matches: 158, Mismatches: 32, Indels: 23
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.01
26 23 0.15
27 113 0.72
28 21 0.13
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGATATTT
Found at i:51606395 original size:27 final size:27
Alignment explanation
Indices: 51606365--51606544 Score: 176
Period size: 27 Copynumber: 6.7 Consensus size: 27
51606355 ACTACAAGGA
* *
51606365 TATTTCAGTAATTTCACAAA-CCAGGGG
1 TATTTCAGTAATTTTACAAATCGA-GGG
*
51606392 TATTT-AGTTAATTTTAC-AATCTGAGGA
1 TATTTCAG-TAATTTTACAAATC-GAGGG
* * **
51606419 TACTTCGGTAATTTTAC-AATTTAGGGG
1 TATTTCAGTAATTTTACAAATCGA-GGG
*
51606446 TATTTCGGTAATTTTA-AAATCGAGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
51606472 TATTTCA-TCAATTTTACAAATCGAGGG
1 TATTTCAGT-AATTTTACAAATCGAGGG
*
51606499 TATTTCAGTAATTTTACAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
51606526 TATTTC-GATAATTTTACAA
1 TATTTCAG-TAATTTTACAA
51606545 TCCAAGGTCT
Statistics
Matches: 130, Mismatches: 13, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.01
26 22 0.17
27 104 0.80
28 3 0.02
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCGAGGG
Found at i:51606419 original size:54 final size:52
Alignment explanation
Indices: 51606308--51606544 Score: 176
Period size: 54 Copynumber: 4.4 Consensus size: 52
51606298 ACCCTACAAG
* ** ** * * *
51606308 GGATATTTCAGTAATTTTAC-ACTACAATGGTACTTCGGTAATTGTACACTACAA
1 GGATATTTCAGTAATTTTACAAAT-CAGGGGTA-TTTAGTAATTTTACAAT-CGA
* *
51606362 GGATATTTCAGTAATTTCACAAACCAGGGGTATTTAGTTAATTTTACAATCTGA
1 GGATATTTCAGTAATTTTACAAATCAGGGGTATTTAG-TAATTTTACAATC-GA
* * * * * *
51606416 GGATACTTCGGTAATTTTACAATTTAGGGGTATTTCGGTAATTTTAAAATCGA
1 GGATATTTCAGTAATTTTACAAATCAGGGGTATTT-AGTAATTTTACAATCGA
* *
51606469 GGGTATTTCA-TCAATTTTACAAATC-GAGGGTATTTCAGTAATTTTACAAATCGG
1 GGATATTTCAGT-AATTTTACAAATCAG-GGGTATTT-AGTAATTTTAC-AATCGA
*
51606523 GGGTATTTC-GATAATTTTACAA
1 GGATATTTCAG-TAATTTTACAA
51606545 TCCAAGGTCT
Statistics
Matches: 148, Mismatches: 26, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.01
53 42 0.28
54 101 0.68
55 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (52 bp):
GGATATTTCAGTAATTTTACAAATCAGGGGTATTTAGTAATTTTACAATCGA
Found at i:51612907 original size:48 final size:48
Alignment explanation
Indices: 51612849--51613119 Score: 262
Period size: 48 Copynumber: 5.6 Consensus size: 48
51612839 TATGTGCACT
* *
51612849 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATAAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * **
51612897 AATGTAAGACCATGTTTGGAACATGGCATTGGAAAT-ATAATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGAT-ATGAGAGCC
* * ** * * *
51612945 AATGTAAGACCATGTTTGGGATATGGCATC-GATATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-TGATATGAGAGCC
* * * *
51612993 AGTGTAAGACAATGTTTGGGACATGGTATCGGCCA-CATTATGAAAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGA-TATGAGAGCC
* * * *
51613041 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCAACATGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCAT-GATATGAGAGCC
* *
51613089 GGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTTTGGGACATGGCATCG
51613120 ACAATTCACC
Statistics
Matches: 181, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
47 6 0.03
48 170 0.94
49 5 0.03
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCC
Found at i:51613096 original size:144 final size:144
Alignment explanation
Indices: 51612836--51613120 Score: 362
Period size: 144 Copynumber: 2.0 Consensus size: 144
51612826 GACATCTGGG
* *
51612836 TGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATAAGAGCCAATG
1 TGATATGTGCACTAGTGTAAGACAATGTCTGGGACATGGCATCGGCCATCATATAAGAGCCAATG
* * *
51612901 TAAGACCATGTTTGGAACATGGCATTGGAAATATAATGAGAGCCAATGTAAGACCATGTTTGGGA
66 TAAGACCATGTCTGGAACATGGCATCGGAAATATAATGAGAGCCAATGTAAGACCATGTTTGGAA
*
51612966 TATGGCATCGATAT
131 CATGGCATCGATAT
* * * *
51612980 TGATATGTGCGCTAGTGTAAGACAATGTTTGGGACATGGTATCGGCCA-CATTATGAA-AGCCAG
1 TGATATGTGCACTAGTGTAAGACAATGTCTGGGACATGGCATCGGCCATCA-TAT-AAGAGCCAA
* ** * **
51613043 TGTAAGACCATGTCTGGGACATGGCATCGG-CCTCA-ACATGTGAGCCGGTGTAAGACCATGTTT
64 TGTAAGACCATGTCTGGAACATGGCATCGGAAAT-ATA-ATGAGAGCCAATGTAAGACCATGTTT
51613106 GGAACATGGCATCGA
127 GGAACATGGCATCGA
51613121 CAATTCACCC
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
143 3 0.02
144 116 0.96
145 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (144 bp):
TGATATGTGCACTAGTGTAAGACAATGTCTGGGACATGGCATCGGCCATCATATAAGAGCCAATG
TAAGACCATGTCTGGAACATGGCATCGGAAATATAATGAGAGCCAATGTAAGACCATGTTTGGAA
CATGGCATCGATAT
Found at i:51616886 original size:22 final size:22
Alignment explanation
Indices: 51616861--51616904 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
51616851 TAACAAGTAA
51616861 GTGGAATGACATAGTGGTTAAG
1 GTGGAATGACATAGTGGTTAAG
51616883 GTGGAATGACATAGTGGTTAAG
1 GTGGAATGACATAGTGGTTAAG
51616905 TACCTTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.36, T:0.27
Consensus pattern (22 bp):
GTGGAATGACATAGTGGTTAAG
Found at i:51621617 original size:78 final size:81
Alignment explanation
Indices: 51621497--51621679 Score: 225
Period size: 78 Copynumber: 2.3 Consensus size: 81
51621487 TGAATGATGT
*
51621497 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCATT
*
51621560 TGTGCGAGATACTA-ATT
65 TGTGCGAGATACTATA-A
* * * **
51621577 CC-GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATTT
*
51621639 GTGCGAGTTACTATAA
66 GTGCGAGATACTATAA
*
51621655 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51621680 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 21 0.24
80 16 0.18
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:51621686 original size:40 final size:40
Alignment explanation
Indices: 51621496--51621679 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
51621486 TTGAATGATG
* * * *
51621496 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51621536 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51621576 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51621614 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51621655 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51621680 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 28 0.22
39 12 0.10
40 75 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51621697 original size:80 final size:77
Alignment explanation
Indices: 51621549--51621712 Score: 197
Period size: 78 Copynumber: 2.1 Consensus size: 77
51621539 GGACTAAGAT
* **
51621549 CCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
51621614 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
51621627 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACC-GGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
51621690 TATATCCGGTTAAATT
62 TAAATCCGGTTAAATC
51621706 CCGAAGG
1 CCGAAGG
51621713 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.03
78 25 0.34
79 22 0.30
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:51629650 original size:39 final size:41
Alignment explanation
Indices: 51629549--51629732 Score: 206
Period size: 40 Copynumber: 4.6 Consensus size: 41
51629539 TTGAATGATG
* *
51629549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
51629589 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
51629629 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
51629668 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
51629708 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51629733 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
39 49 0.39
40 65 0.51
41 12 0.09
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:51629685 original size:79 final size:80
Alignment explanation
Indices: 51629549--51629732 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 80
51629539 TTGAATGATG
*
51629549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51629613 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
51629628 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
51629691 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* * *
51629708 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
51629733 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 71 0.78
80 19 0.21
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:51629739 original size:79 final size:78
Alignment explanation
Indices: 51629602--51629765 Score: 206
Period size: 79 Copynumber: 2.1 Consensus size: 78
51629592 GGACTAAGAT
* **
51629602 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TAGCTA
*
51629666 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* * *
51629681 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTA
* *
51629745 TATCCGGTTAAATT
65 AATCCGGTTAAATC
51629759 CCGAAGG
1 CCGAAGG
51629766 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 18 0.24
79 56 0.76
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:51629762 original size:39 final size:40
Alignment explanation
Indices: 51629562--51629765 Score: 163
Period size: 39 Copynumber: 5.2 Consensus size: 40
51629552 GGGCTAAGTC
* * * **
51629562 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGA-T
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAA-ATT
* * **
51629602 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCT-AAGC
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGTTAAATT
* * *
51629641 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAATT
* *
51629681 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT--ATGT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAAT-T
**
51629720 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAATT
51629759 CCGAAGG
1 CCGAAGG
51629766 TACGTGATTT
Statistics
Matches: 136, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
38 7 0.05
39 65 0.48
40 57 0.42
41 7 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAATT
Found at i:51632275 original size:23 final size:23
Alignment explanation
Indices: 51632245--51632290 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51632235 GGTGATTAAG
51632245 AACTAAGATTTTAAACAAAGTAA
1 AACTAAGATTTTAAACAAAGTAA
51632268 AACTAAGATTTTAAACAAAGTAA
1 AACTAAGATTTTAAACAAAGTAA
51632291 CTAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.26
Consensus pattern (23 bp):
AACTAAGATTTTAAACAAAGTAA
Found at i:51657468 original size:47 final size:45
Alignment explanation
Indices: 51657347--51657519 Score: 161
Period size: 47 Copynumber: 3.8 Consensus size: 45
51657337 TGGATATTTG
** **
51657347 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACAGATGGAACT
* * * * *
51657392 GAGCGTCCGAACTCGATGAGTTGAGTCCGAGTTCGAGAGATGTAACT
1 G-GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACAGATGGAACT
* **
51657439 AGGCATCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGG-A-T
1 -GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACAGATGGAACT
* *
51657483 GCGAACGCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 G-GCA-TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
51657520 TTATGGGCGG
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 31 0.30
46 33 0.32
47 34 0.33
48 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (45 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACAGATGGAACT
Found at i:51657506 original size:45 final size:44
Alignment explanation
Indices: 51657352--51657525 Score: 188
Period size: 45 Copynumber: 3.8 Consensus size: 44
51657342 ATTTGGGCAT
*
51657352 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * *** * * *
51657397 TCCGAACTCGATGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-T
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAACG
*
51657445 CCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
51657490 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51657526 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.35
46 30 0.29
47 29 0.28
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACG
Found at i:51660466 original size:15 final size:15
Alignment explanation
Indices: 51660427--51660505 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51660417 GTATCTTGGG
*
51660427 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
51660442 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
51660457 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
51660471 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
51660486 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51660500 TTTCTT
1 TTTCTT
51660506 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51660490 original size:29 final size:29
Alignment explanation
Indices: 51660418--51660504 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
51660408 CATAGTATCG
* * * *
51660418 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
51660448 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
51660477 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
51660505 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:51662484 original size:46 final size:46
Alignment explanation
Indices: 51662420--51662595 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
51662410 TATTTGGGCA
51662420 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * ** * * * *
51662466 TCCAAACTCGATGAGTTGAGTCCGAGTTCGAGATATGTA-ACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
51662513 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
51662559 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51662596 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:51662575 original size:93 final size:93
Alignment explanation
Indices: 51662416--51662587 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51662406 AGGATATTTG
* *
51662416 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCAAACTCGATGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGATGAG
51662481 TTGAGTCCGAGTTCGAGATATGTAACTA
66 TTGAGTCCGAGTTCGAGATATGTAACTA
* * * *
51662509 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGATGAG
51662574 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51662588 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGATGAG
TTGAGTCCGAGTTCGAGATATGTAACTA
Found at i:51682940 original size:2 final size:2
Alignment explanation
Indices: 51682933--51682968 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
51682923 AAGAAAACAG
51682933 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
51682969 AACAATAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:51683511 original size:21 final size:20
Alignment explanation
Indices: 51683439--51683512 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 20
51683429 TTCTTTTACT
* *
51683439 AAAAATCATAAAAAAATTAA
1 AAAAATTATAAAAATATTAA
*
51683459 AAAATTTATTATAAAATATT-A
1 AAAAATTA-TA-AAAATATTAA
* *
51683480 ATAATTTATAAAAATATTGAA
1 AAAAATTATAAAAATATT-AA
51683501 AAAAATTATAAA
1 AAAAATTATAAA
51683513 CGTTTAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
19 8 0.18
20 8 0.18
21 21 0.48
22 7 0.16
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (20 bp):
AAAAATTATAAAAATATTAA
Found at i:51683530 original size:18 final size:18
Alignment explanation
Indices: 51683500--51683558 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
51683490 AAAATATTGA
* *
51683500 AAAAAATTATAAACGTTT
1 AAAAACTTATAAACGTAT
*
51683518 AAAAACTTGTAAACGTAT
1 AAAAACTTATAAACGTAT
**
51683536 AAAAACTTATAAAAATAT
1 AAAAACTTATAAACGTAT
51683554 AAAAA
1 AAAAA
51683559 ATAAAAATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAAACTTATAAACGTAT
Found at i:51683576 original size:10 final size:9
Alignment explanation
Indices: 51683533--51683574 Score: 54
Period size: 8 Copynumber: 4.9 Consensus size: 9
51683523 CTTGTAAACG
51683533 TATAAAAACT
1 TATAAAAA-T
51683543 TATAAAAA-
1 TATAAAAAT
51683551 TATAAAAA-
1 TATAAAAAT
51683559 -ATAAAAAT
1 TATAAAAAT
51683567 TATAAAAA
1 TATAAAAA
51683575 ATCATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.23
8 8 0.27
9 7 0.23
10 8 0.27
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (9 bp):
TATAAAAAT
Found at i:51684354 original size:19 final size:19
Alignment explanation
Indices: 51684311--51684370 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
51684301 TTAAAAAAAT
51684311 ATTTTTTATAATTAATTTGAT-
1 ATTTTTTATAA-T-ATTT-ATA
51684332 -TTTTTTATAATATTTATA
1 ATTTTTTATAATATTTATA
*
51684350 ATTTTTTATGAATTTTTATA
1 ATTTTTTAT-AATATTTATA
51684370 A
1 A
51684371 GATTATATAC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
17 2 0.06
18 4 0.11
19 9 0.26
20 20 0.57
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
ATTTTTTATAATATTTATA
Found at i:51684365 original size:10 final size:9
Alignment explanation
Indices: 51684333--51684441 Score: 62
Period size: 10 Copynumber: 11.6 Consensus size: 9
51684323 TAATTTGATT
51684333 TTTTTATAA
1 TTTTTATAA
*
51684342 TATTTATAA
1 TTTTTATAA
51684351 TTTTTTATGAA
1 -TTTTTAT-AA
51684362 TTTTTATAA
1 TTTTTATAA
* * *
51684371 GATTATATAC
1 -TTTTTATAA
*
51684381 TTTTTTTAA
1 TTTTTATAA
51684390 TATTTTAT-A
1 T-TTTTATAA
51684399 TTTTTA-ATA
1 TTTTTATA-A
51684408 TTTTT-TAA
1 TTTTTATAA
*
51684416 TATTTTTTAA
1 T-TTTTATAA
*
51684426 TGTTTTTTAA
1 T-TTTTATAA
51684436 TGTTTT
1 T-TTTT
51684442 TTTACTAAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
8 7 0.09
9 29 0.36
10 42 0.52
11 2 0.03
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:51684365 original size:29 final size:28
Alignment explanation
Indices: 51684333--51684424 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 28
51684323 TAATTTGATT
51684333 TTTTTATAATATTTATAATTTTTTATGAA
1 TTTTTATAATATTTATAATTTTTTAT-AA
* *
51684362 TTTTTATAAGATTATATACTTTTTT-TAA
1 TTTTTATAATATT-TATAATTTTTTATAA
* *
51684390 TATTTTAT-ATTTTTA-ATATTTTTTAATAT
1 T-TTTTATAATATTTATA-ATTTTTT-ATAA
51684419 TTTTTA
1 TTTTTA
51684425 ATGTTTTTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.02
27 8 0.15
28 11 0.21
29 22 0.42
30 10 0.19
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (28 bp):
TTTTTATAATATTTATAATTTTTTATAA
Found at i:51684398 original size:19 final size:19
Alignment explanation
Indices: 51684334--51684443 Score: 82
Period size: 20 Copynumber: 5.8 Consensus size: 19
51684324 AATTTGATTT
* * *
51684334 TTTTATAATATTTATAATT
1 TTTTATAATTTTTTTAATA
* *
51684353 TTTTATGAATTTTTATAAGA
1 TTTTAT-AATTTTTTTAATA
* *
51684373 TTATATACTTTTTTTAATA
1 TTTTATAATTTTTTTAATA
51684392 TTTTAT-A--TTTTTAATA
1 TTTTATAATTTTTTTAATA
* *
51684408 TTTTTTAATATTTTTTAATG
1 TTTTATAAT-TTTTTTAATA
*
51684428 TTTTTTAATGTTTTTT
1 TTTTATAAT-TTTTTT
51684444 TACTAAAAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
16 14 0.19
17 1 0.01
19 21 0.28
20 38 0.51
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTTATAATTTTTTTAATA
Found at i:51684442 original size:10 final size:10
Alignment explanation
Indices: 51684382--51684443 Score: 78
Period size: 10 Copynumber: 6.6 Consensus size: 10
51684372 ATTATATACT
51684382 TTTTTTAATA
1 TTTTTTAATA
51684392 --TTTT-ATA
1 TTTTTTAATA
51684399 -TTTTTAATA
1 TTTTTTAATA
51684408 TTTTTTAATA
1 TTTTTTAATA
*
51684418 TTTTTTAATG
1 TTTTTTAATA
*
51684428 TTTTTTAATG
1 TTTTTTAATA
51684438 TTTTTT
1 TTTTTT
51684444 TACTAAAAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
7 3 0.06
8 8 0.17
9 3 0.06
10 34 0.71
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTTTTAATA
Found at i:51685148 original size:21 final size:21
Alignment explanation
Indices: 51685110--51685149 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51685100 GCCAAGCCAT
* **
51685110 TTTAAGGTTTTAGTTTAGTAG
1 TTTAAGATTTTAACTTAGTAG
51685131 TTTAAGATTTTAACTTAGT
1 TTTAAGATTTTAACTTAGT
51685150 TTTATTTCTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.53
Consensus pattern (21 bp):
TTTAAGATTTTAACTTAGTAG
Found at i:51685715 original size:21 final size:22
Alignment explanation
Indices: 51685678--51685721 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
51685668 GTTTGTCAAC
*
51685678 TTTGTTTCTATAGTTTAA-CTT
1 TTTGTTTCTATACTTTAATCTT
51685699 TTTGTTT-TATGACTTTAATCTT
1 TTTGTTTCTAT-ACTTTAATCTT
51685721 T
1 T
51685722 AGCTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 13 0.65
22 4 0.20
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.64
Consensus pattern (22 bp):
TTTGTTTCTATACTTTAATCTT
Found at i:51690176 original size:24 final size:24
Alignment explanation
Indices: 51690124--51690195 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
51690114 AATGACATTG
* * *
51690124 GCACTAAGTGTGCGGATTTTGAATG
1 GCACTATGTGTGCAGA-TTTGAATA
*
51690149 GCACTATGTGTGCAGAATTGAATA
1 GCACTATGTGTGCAGATTTGAATA
*
51690173 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCAGATTTGAAT
51690196 GTCAATACGA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 27 0.66
25 14 0.34
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCAGATTTGAATA
Found at i:51690250 original size:24 final size:24
Alignment explanation
Indices: 51690222--51690284 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
51690212 GGATTTCTAA
* *
51690222 GGCACTATGTGTGCGGGTTAGCAT
1 GGCACTATGTGTGCGGATTAGAAT
* *
51690246 GGCACTAAGTGTGCGGATTTGAAT
1 GGCACTATGTGTGCGGATTAGAAT
* *
51690270 AGCACTGTGTGTGCG
1 GGCACTATGTGTGCG
51690285 AAATCGATTG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.37, T:0.29
Consensus pattern (24 bp):
GGCACTATGTGTGCGGATTAGAAT
Found at i:51693323 original size:43 final size:43
Alignment explanation
Indices: 51693199--51693358 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
51693189 ATATGTGTTA
* * * *
51693199 TCGTGTAAAACCATGTCTGGGACATTGGCATTGAA-ATATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCA-TCAATATTTGATT
*
51693242 TACGTGTAAGACCACGTCTGGGACATTGGCATC-GTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCAATATTTGATT
* * *
51693285 TTGTGTAAGACC-CTGTCTGGGACAGTGGTATCAATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCAATATTTGATT
* * *
51693328 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCAT
51693359 TGTACGAGAT
Statistics
Matches: 97, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 42 0.43
44 28 0.29
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCAATATTTGATT
Found at i:51693356 original size:85 final size:86
Alignment explanation
Indices: 51693201--51693358 Score: 221
Period size: 85 Copynumber: 1.8 Consensus size: 86
51693191 ATGTGTTATC
* * *
51693201 GTGTAAAACCATGTCTGGGACATTGGCATTGAAATATGATTTACGTGTAAGACCACGTCTGGGAC
1 GTGTAAAACCATGTCTGGGACAGTGGCATTCAAATATGATTTACATGTAAGACCACGTCTGGGAC
51693266 ATTGGCATCGTATTTGATTTT
66 ATTGGCATCGTATTTGATTTT
* * * *
51693287 GTGTAAGACCCTGTCTGGGACAGTGGTA-TCAATATTTGA-TTACATGTAAGACCACGTCTGGGA
1 GTGTAAAACCATGTCTGGGACAGTGGCATTCAA-ATATGATTTACATGTAAGACCACGTCTGGGA
*
51693350 CGTTGGCAT
65 CATTGGCAT
51693359 TGTACGAGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 34 0.54
86 29 0.46
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (86 bp):
GTGTAAAACCATGTCTGGGACAGTGGCATTCAAATATGATTTACATGTAAGACCACGTCTGGGAC
ATTGGCATCGTATTTGATTTT
Found at i:51694110 original size:11 final size:11
Alignment explanation
Indices: 51694094--51694130 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
51694084 AACATATGCA
51694094 TTGGTATGATT
1 TTGGTATGATT
51694105 TTGGTATAGA-T
1 TTGGTAT-GATT
51694116 TTGGTATG-TT
1 TTGGTATGATT
51694126 TTGGT
1 TTGGT
51694131 TGGTAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 7 0.29
11 15 0.62
12 2 0.08
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.54
Consensus pattern (11 bp):
TTGGTATGATT
Found at i:51704146 original size:43 final size:42
Alignment explanation
Indices: 51703990--51704147 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 42
51703980 ATGTGTTATT
* * *
51703990 GTGTAAGACCACGTCGGGGACGTTGGCATCAAATTATGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCATATT-TGA-TTAC
* *
51704034 GTGTAATACCACGTCTGGGACATTGGCATCATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTAC
* *
51704076 GTGTGAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATC-ATATTTGATTAC
* **
51704119 ATGTAAGACCACGTCTGGGATTTTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
51704148 TGTACGAGAT
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 36 0.37
44 32 0.33
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTAC
Found at i:51708477 original size:11 final size:11
Alignment explanation
Indices: 51708446--51708479 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
51708436 TATCATTTTA
51708446 TGGATTT-TTT
1 TGGATTTGTTT
51708456 TGGACTTTGTTT
1 TGGA-TTTGTTT
51708468 TGGATTTGTTT
1 TGGATTTGTTT
51708479 T
1 T
51708480 AATAACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.18
11 11 0.50
12 7 0.32
ACGTcount: A:0.09, C:0.03, G:0.24, T:0.65
Consensus pattern (11 bp):
TGGATTTGTTT
Found at i:51724933 original size:13 final size:13
Alignment explanation
Indices: 51724915--51724977 Score: 72
Period size: 13 Copynumber: 4.5 Consensus size: 13
51724905 TAGGGGCACA
51724915 AGCCCGTGTGGCC
1 AGCCCGTGTGGCC
*
51724928 AGCCCGTGTAGCC
1 AGCCCGTGTGGCC
51724941 AGCCCGTGTGGCTCCC
1 AGCCCGTGTGG---CC
*
51724957 ATGGCCGTGTGGCC
1 A-GCCCGTGTGGCC
51724971 AGCCCGT
1 AGCCCGT
51724978 AGGCAATTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
13 27 0.64
14 3 0.07
16 3 0.07
17 9 0.21
ACGTcount: A:0.10, C:0.38, G:0.35, T:0.17
Consensus pattern (13 bp):
AGCCCGTGTGGCC
Found at i:51725967 original size:33 final size:32
Alignment explanation
Indices: 51725927--51726020 Score: 91
Period size: 33 Copynumber: 2.9 Consensus size: 32
51725917 TTGAGGTGTA
*
51725927 CATTCCTTTCCAAGTGGTACACAAAAAGTAAAC
1 CATTCCTTTCCAA-TGGTACACACAAAGTAAAC
* * * *
51725960 CTTTCCTTTTCATATGGTATACACAAAGTATAC
1 CATTCCTTTCCA-ATGGTACACACAAAGTAAAC
**
51725993 CAAACCTTTCCAAAT-GTACACACAAAGT
1 CATTCCTTTCC-AATGGTACACACAAAGT
51726021 GTACATAACC
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
32 12 0.24
33 35 0.71
34 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTCCTTTCCAATGGTACACACAAAGTAAAC
Found at i:51733158 original size:40 final size:40
Alignment explanation
Indices: 51733100--51733323 Score: 261
Period size: 40 Copynumber: 5.5 Consensus size: 40
51733090 TATTCGGATG
51733100 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
51733140 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
51733183 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
51733223 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * ** *
51733263 ATATCTGAGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
51733303 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
51733324 ATACTTGGGT
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 108 0.69
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:51733243 original size:83 final size:80
Alignment explanation
Indices: 51733104--51733323 Score: 259
Period size: 83 Copynumber: 2.7 Consensus size: 80
51733094 CGGATGATAT
* * *
51733104 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA-TT-
* *
51733169 TACGAGTAGTTG-CTATAC
64 CACG-CTAG-TGACTATAC
51733187 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
51733252 TGCTAGTGACTATAT
66 CGCTAGTGACTATAC
* * * *
51733267 CTGAGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACTATATCCGGGCTAAGTCCCGAAG
51733324 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 17 0.14
80 42 0.34
81 4 0.03
82 2 0.02
83 58 0.47
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
CGCTAGTGACTATAC
Found at i:51735008 original size:101 final size:101
Alignment explanation
Indices: 51734833--51735040 Score: 380
Period size: 101 Copynumber: 2.1 Consensus size: 101
51734823 CAAAAATATC
*
51734833 TCTTTTCATTCCCGGCCACCAATACATATATTTCAAATCATTATACATTTTATTACTACCTGGAT
1 TCTTTTCATTCCCAGCCACCAATACATATATTTCAAATCATTATACATTTTATTACTACCTGGAT
51734898 GAACTGACATTGCACCGTTATGAGCTTCATACAAAA
66 GAACTGACATTGCACCGTTATGAGCTTCATACAAAA
* *
51734934 TCTTTTCATTCCCAGCCACCAATACATCTTTTTCAAATCATTATACATTTTATTACTACCTGGAT
1 TCTTTTCATTCCCAGCCACCAATACATATATTTCAAATCATTATACATTTTATTACTACCTGGAT
*
51734999 GAACTGACATTGCACTGTTATGAGCTTCATACAAAA
66 GAACTGACATTGCACCGTTATGAGCTTCATACAAAA
51735035 TCTTTT
1 TCTTTT
51735041 GTACCAGTTA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (101 bp):
TCTTTTCATTCCCAGCCACCAATACATATATTTCAAATCATTATACATTTTATTACTACCTGGAT
GAACTGACATTGCACCGTTATGAGCTTCATACAAAA
Found at i:51736884 original size:23 final size:23
Alignment explanation
Indices: 51736832--51736888 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
51736822 ATGTTGGGTT
51736832 AACC-AATCCATTCCCAATATCA
1 AACCGAATCCATTCCCAATATCA
**
51736854 AATTGAATCCATTCCCAATATCA
1 AACCGAATCCATTCCCAATATCA
*
51736877 CACCGAATCCAT
1 AACCGAATCCAT
51736889 CAAAAGGCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 2 0.07
23 27 0.93
ACGTcount: A:0.39, C:0.33, G:0.04, T:0.25
Consensus pattern (23 bp):
AACCGAATCCATTCCCAATATCA
Found at i:51760089 original size:43 final size:44
Alignment explanation
Indices: 51759934--51760089 Score: 132
Period size: 43 Copynumber: 3.6 Consensus size: 44
51759924 TGTGTTATCG
* *
51759934 TGTAAGACCACATCTGGGACGTTGGCATC-A-ACTTATGATTTACG
1 TGTAAGACCACATCTGGAACGTTGGCATCGATA-TT-TGATTTACA
* *
51759978 TGTAAGACCACATCTAGG-ATGTTAGCATCG-TATTTGATTT-CA
1 TGTAAGACCACATCT-GGAACGTTGGCATCGATATTTGATTTACA
* *
51760020 TGTAAGACC-CTGTCCGGGATA-G-TGGCATCGATATTTG-TTTACA
1 TGTAAGACCAC-AT-CTGGA-ACGTTGGCATCGATATTTGATTTACA
*
51760063 TGTAAGACCACGTCTGGAACGTTGGCA
1 TGTAAGACCACATCTGGAACGTTGGCA
51760090 ATGTACGAGC
Statistics
Matches: 93, Mismatches: 7, Indels: 25
0.74 0.06 0.20
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 32 0.34
44 28 0.30
45 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACATCTGGAACGTTGGCATCGATATTTGATTTACA
Found at i:51761453 original size:30 final size:31
Alignment explanation
Indices: 51761377--51761457 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 31
51761367 CGAGGTTGCC
* *
51761377 AGATATTGTGACGAAGTCACCAG----ATAT
1 AGATATTGTGGCGAAGCCACCAGAACAATAT
* *
51761404 AGATATTGTGGCTAGGCCACCAGAACAATAT
1 AGATATTGTGGCGAAGCCACCAGAACAATAT
*
51761435 ATATA-TGTGGCGAAGCCACCAGA
1 AGATATTGTGGCGAAGCCACCAGA
51761458 TTGCAGCAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
27 19 0.44
30 16 0.37
31 8 0.19
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (31 bp):
AGATATTGTGGCGAAGCCACCAGAACAATAT
Found at i:51761576 original size:71 final size:69
Alignment explanation
Indices: 51761421--51761611 Score: 298
Period size: 67 Copynumber: 2.8 Consensus size: 69
51761411 GTGGCTAGGC
51761421 CACCAGAACAATATATATATGTGGCGAAGCCACCAGATTGCAGC-AGGCTGCCAGATATTATGAC
1 CACCAGAACAATATATATA-GTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGAC
51761485 GAAGT
65 GAAGT
* *
51761490 CACCAAAACATATATATATAAGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGA
1 CACCAGAACA-ATATATAT-AGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGA
51761555 CGAAGT
64 CGAAGT
* *
51761561 CACCAGAAC-AGATATAT-GTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCA
1 CACCAGAACAATATATATAGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCA
51761612 AAACGCTTCC
Statistics
Matches: 114, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
67 33 0.29
69 16 0.14
70 32 0.28
71 33 0.29
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (69 bp):
CACCAGAACAATATATATAGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGACG
AAGT
Found at i:51761591 original size:27 final size:26
Alignment explanation
Indices: 51761543--51761594 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51761533 GCGAGGCTGC
*
51761543 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
51761569 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
51761595 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:51771060 original size:79 final size:81
Alignment explanation
Indices: 51770951--51771133 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
51770941 TACTCGTTCA
* *
51770951 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
51771014 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
51771031 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
51771094 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
51771110 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51771134 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:51771133 original size:40 final size:40
Alignment explanation
Indices: 51770930--51771133 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
51770920 CGGAATTTAA
** *
51770930 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51770970 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51771010 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51771049 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51771089 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51771129 CCGGA
1 CCGGA
51771134 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51781097 original size:49 final size:49
Alignment explanation
Indices: 51780990--51781101 Score: 120
Period size: 49 Copynumber: 2.3 Consensus size: 49
51780980 TGAGATATAC
* * * * *
51780990 AAGCTAGTGTAAGACTTGTCTGGGACATGGTATCGACACTGATAGATGA
1 AAGCAAGTGTAAGACCTGCCTGGGACATGGCATAGACACTGATAGATGA
* * *
51781039 GAGCAAGTGTAAGACCTGCCTGGGACATGGCATAGGC-CTCGATATATGA
1 AAGCAAGTGTAAGACCTGCCTGGGACATGGCATAGACACT-GATAGATGA
51781088 AAGTC-AGTGTAAGA
1 AAG-CAAGTGTAAGA
51781102 GCTGTCTAGG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.04
49 49 0.94
50 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.23
Consensus pattern (49 bp):
AAGCAAGTGTAAGACCTGCCTGGGACATGGCATAGACACTGATAGATGA
Found at i:51784140 original size:57 final size:58
Alignment explanation
Indices: 51783993--51784140 Score: 176
Period size: 57 Copynumber: 2.6 Consensus size: 58
51783983 TATAGACAAC
* * *
51783993 AGGATTACCAGTCCAGGCTAAATACTTTTTATGACATATGCTCTAAAGAGCTTGATCT
1 AGGATTACCAGTCCAGGCTAAATACTTTTCATAACATATGCTCGAAAGAGCTTGATCT
* ** * * *
51784051 -GGAGTACCAGTCCAGGCTAAATACAATCCATAACATATGCTCGAAAGGGCTT-ATATT
1 AGGATTACCAGTCCAGGCTAAATACTTTTCATAACATATGCTCGAAAGAGCTTGAT-CT
*
51784108 AGGATTACCCGTCCAGGCTAAAT-CTTTTCATAA
1 AGGATTACCAGTCCAGGCTAAATACTTTTCATAA
51784141 ATGAGGTCAA
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
56 2 0.03
57 52 0.70
58 20 0.27
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (58 bp):
AGGATTACCAGTCCAGGCTAAATACTTTTCATAACATATGCTCGAAAGAGCTTGATCT
Found at i:51789574 original size:40 final size:40
Alignment explanation
Indices: 51789469--51789725 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
51789459 CAAATGATAA
* *
51789469 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
51789509 CCAGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51789548 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51789588 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** * *
51789628 CCAAGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51789668 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
51789708 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51789726 TACTTGGTTT
Statistics
Matches: 192, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 49 0.26
40 143 0.74
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51789679 original size:120 final size:119
Alignment explanation
Indices: 51789465--51789692 Score: 386
Period size: 120 Copynumber: 1.9 Consensus size: 119
51789455 CATTCAAATG
* *
51789465 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAAGCTCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAAGCTAAGCTCGAAGGCAT
*
51789530 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* *
51789584 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCAAGCTAAGTTCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCAAGCTAAGCT-CGAAGGC
51789648 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
51789693 AGCAAGTAGC
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
118 2 0.02
119 49 0.48
120 51 0.50
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAAGCTAAGCTCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
Found at i:51789706 original size:120 final size:119
Alignment explanation
Indices: 51789465--51789725 Score: 384
Period size: 119 Copynumber: 2.2 Consensus size: 119
51789455 CATTCAAATG
* *
51789465 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAAGCTCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAAGCTAAGCTCGAAGGCAT
* * *
51789530 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
* *
51789584 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCAAGCTAAGTTCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCAAGCTAAGCT-CGAAGGC
51789648 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
51789704 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
51789726 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
118 2 0.02
119 65 0.50
120 62 0.48
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAAGCTAAGCTCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:51794487 original size:40 final size:40
Alignment explanation
Indices: 51794432--51794621 Score: 263
Period size: 40 Copynumber: 4.8 Consensus size: 40
51794422 TAATTATTGA
* *
51794432 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* *
51794472 TGATTGCACATACGTGCCCTTGTTTGTACTTAGATACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * *
51794512 TGATTGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* *
51794552 TGATTACACATACATGCCCCTGTTTGTACTTCGATACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * * *
51794592 TGAATGCACTTACATGCCCCTGTTTATACT
1 TGATTGCACATACGTGCCCCTGTTTGTACT
51794622 CTAGTATCCC
Statistics
Matches: 133, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
Found at i:51794519 original size:80 final size:80
Alignment explanation
Indices: 51794432--51794621 Score: 290
Period size: 80 Copynumber: 2.4 Consensus size: 80
51794422 TAATTATTGA
* * * * *
51794432 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCTTGTTT
1 TGATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCCTGATTACACATACATGCCCCTGTTT
51794497 GTACTTAGATACCCC
66 GTACTTAGATACCCC
*
51794512 TGATTGCACATACGTGCCCCTGTTTATACTTTGGTACCCCTGATTACACATACATGCCCCTGTTT
1 TGATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCCTGATTACACATACATGCCCCTGTTT
*
51794577 GTACTTCGATACCCC
66 GTACTTAGATACCCC
* * *
51794592 TGAATGCACTTACATGCCCCTGTTTATACT
1 TGATTGCACATACGTGCCCCTGTTTATACT
51794622 CTAGTATCCC
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 100 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (80 bp):
TGATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCCTGATTACACATACATGCCCCTGTTT
GTACTTAGATACCCC
Found at i:51794533 original size:20 final size:20
Alignment explanation
Indices: 51794432--51794533 Score: 84
Period size: 20 Copynumber: 5.1 Consensus size: 20
51794422 TAATTATTGA
51794432 TGATTGCACATACGTGCCCC
1 TGATTGCACATACGTGCCCC
* * *
51794452 T-ATTTGTAC-TTCGGTACCCC
1 TGA-TTGCACATAC-GTGCCCC
*
51794472 TGATTGCACATACGTGCCCT
1 TGATTGCACATACGTGCCCC
* * * *
51794492 TGTTTGTACTTA-GATACCCC
1 TGATTGCACATACG-TGCCCC
51794512 TGATTGCACATACGTGCCCC
1 TGATTGCACATACGTGCCCC
51794532 TG
1 TG
51794534 TTTATACTTT
Statistics
Matches: 60, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
19 4 0.07
20 52 0.87
21 4 0.07
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (20 bp):
TGATTGCACATACGTGCCCC
Done.