Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 166 of 311
Found at i:56684799 original size:39 final size:40
Alignment explanation
Indices: 56684754--56684977 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
56684744 GCTCCTCGTT
* * * *
56684754 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
56684794 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
56684833 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
56684873 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
56684912 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
56684953 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
56684978 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 66 0.42
40 78 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:56684857 original size:79 final size:78
Alignment explanation
Indices: 56684754--56684978 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
56684744 GCTCCTCGTT
* * *
56684754 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
56684819 TTTAATAACTCGCA
66 CTT-ATAACTCGCA
* * * *
56684833 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
56684897 AACTTGTATCTCGCA
65 -ACTTATAACTCGCA
* * * * * *
56684912 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
56684976 GAC
64 GAC
56684979 AGCATTCAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 91 0.75
80 27 0.22
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
CTTATAACTCGCA
Found at i:56684986 original size:41 final size:41
Alignment explanation
Indices: 56684909--56684986 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
56684899 CTTGTATCTC
* * *
56684909 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
56684950 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
56684987 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:56690133 original size:39 final size:39
Alignment explanation
Indices: 56690079--56690252 Score: 210
Period size: 39 Copynumber: 4.4 Consensus size: 39
56690069 ACCCAAGTAT
56690079 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTCGCACAAATGC
*
56690118 CTTCGGGTCTTAGCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCGGATATAACAACTCGCACAAATGC
* * *
56690157 CTTCGGGTCTTAGCCCGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCGGATATAA-CAACTCGCACAAATGC
* * * *
56690196 CTTC-GGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAG-CCGGATATAACAACTCGCACAAATGC
*
56690235 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
56690253 TTATCATCCG
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
38 8 0.07
39 96 0.84
40 10 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CTTCGGGTCTTAGCCGGATATAACAACTCGCACAAATGC
Found at i:56698157 original size:40 final size:40
Alignment explanation
Indices: 56698098--56698273 Score: 205
Period size: 40 Copynumber: 4.5 Consensus size: 40
56698088 AACCAAGTAT
56698098 CTTCGGGT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
56698136 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
56698176 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* ** * * * *
56698216 CTTCAGAACATAGCCCGGATATAGCAAATCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
56698256 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
56698274 TTATCATCCG
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 8 0.07
39 5 0.04
40 101 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:56702581 original size:19 final size:17
Alignment explanation
Indices: 56702546--56702588 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
56702536 GGTAAGACTG
56702546 AATTTTTTCTTAAATTTT
1 AATTTTTTCTTAAA-TTT
56702564 AATTTTATTC-TAATATTT
1 AATTTT-TTCTTAA-ATTT
56702582 AATTTTT
1 AATTTTT
56702589 CAATTTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (17 bp):
AATTTTTTCTTAAATTT
Found at i:56706140 original size:40 final size:40
Alignment explanation
Indices: 56706083--56706299 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
56706073 CGGATGATAA
*
56706083 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
56706123 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
56706163 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
56706203 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
56706243 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
56706282 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
56706300 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
38 15 0.09
39 14 0.09
40 130 0.82
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:56720008 original size:34 final size:34
Alignment explanation
Indices: 56719962--56720058 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 34
56719952 TCTGGTACTG
*
56719962 TACTGA-ATTGGGCTAAGGCCCGCACTGATATTGC
1 TACTGATA-TGGGCTAAGGCCCACACTGATATTGC
56719996 TACTGATATGGGCTAAGGCCCACACTGATATTGC
1 TACTGATATGGGCTAAGGCCCACACTGATATTGC
* *
56720030 TACTGATAAGGGCTTAA-GCCCAGACTGAT
1 TACTGATATGGGC-TAAGGCCCACACTGAT
56720059 CAACACTGTA
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
34 54 0.93
35 4 0.07
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (34 bp):
TACTGATATGGGCTAAGGCCCACACTGATATTGC
Found at i:56722545 original size:27 final size:27
Alignment explanation
Indices: 56722515--56722667 Score: 207
Period size: 27 Copynumber: 5.7 Consensus size: 27
56722505 ACCCAAATAT
*
56722515 CCTCAATTTATAAAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
56722542 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
56722569 CTTCGATTTATAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
56722596 CCTCGATTTATAGAATTATCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
56722623 CTTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
56722650 CCTCAATTTACAAAATTA
1 CCTCGATTTATAAAATTA
56722668 TTAATACACC
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAAAATTACCGTTTTAC
Found at i:56722605 original size:81 final size:81
Alignment explanation
Indices: 56722515--56722667 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
56722505 ACCCAAATAT
* * *
56722515 CCTCAATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCTTCGATTTAT
1 CCTCAATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAC
56722580 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
* * * * *
56722596 CCTCGATTTATAGAATTATCGTTTTACCTTCGATTTATAGAATTACCGTTTTACCCTCAATTTAC
1 CCTCAATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAC
56722661 AAAATTA
66 AAAATTA
56722668 TTAATACACC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (81 bp):
CCTCAATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAC
AAAATTACCATTTTAC
Found at i:56722668 original size:54 final size:54
Alignment explanation
Indices: 56722520--56722668 Score: 244
Period size: 54 Copynumber: 2.8 Consensus size: 54
56722510 AATATCCTCA
*
56722520 ATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCTTCG
1 ATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCTTCG
* *
56722574 ATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACCTTCG
1 ATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCTTCG
* * *
56722628 ATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTAT
1 ATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTAT
56722669 TAATACACCC
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.42
Consensus pattern (54 bp):
ATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCTTCG
Found at i:56722710 original size:81 final size:81
Alignment explanation
Indices: 56722521--56722804 Score: 223
Period size: 81 Copynumber: 3.5 Consensus size: 81
56722511 ATATCCTCAA
**** * * *
56722521 TTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCTTCGATTTATAAAATT
1 TTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATT
* * * * *
56722586 ACCATTTTACCCTCGA
66 ACTAATATACCCTTGG
* * **** * *
56722602 TTTATAGAATTATCGTTTTACCTTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATT
1 TTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATT
* *
56722667 ATTAATACACCCTTGG
66 ACTAATATACCCTTGG
* * **** * *
56722683 TTTACAAAATTACCAAAATACCCTCGA-TTAGTAAAATTACCAAAATACCC-CTAGTTTGTAAAA
1 TTTATAAAATTACCAAAATACCCTCGATTTA-TAGAATTACCGTTTTACCCTC-AATTTATAAAA
*
56722746 TTACTAAAATACCCTTGG
64 TTACTAATATACCCTTGG
* * *
56722764 TTTGTAAAATTACCAAAATACCCTTGATTTATA-AAATACCG
1 TTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCG
56722805 AAATACCCCT
Statistics
Matches: 162, Mismatches: 38, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
80 10 0.06
81 149 0.92
82 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (81 bp):
TTTATAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATT
ACTAATATACCCTTGG
Found at i:56722719 original size:54 final size:54
Alignment explanation
Indices: 56722675--56722842 Score: 180
Period size: 54 Copynumber: 3.1 Consensus size: 54
56722665 TTATTAATAC
*
56722675 ACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAAT
1 ACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAAT
* * * * * * *
56722729 ACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAAT
1 ACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAAT
* * * * *
56722783 ACCCTTGATTTATAAAA-TACCGAAATACCC-CTA-TAGGGTAGAATTACTAAAAT
1 ACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTA--GTAAAATTACCAAAAT
56722836 ACCCTTG
1 ACCCTTG
56722843 TAGGGTAGAA
Statistics
Matches: 92, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
51 1 0.01
53 32 0.35
54 59 0.64
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
ACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAAT
Found at i:56722814 original size:27 final size:27
Alignment explanation
Indices: 56722471--56722812 Score: 163
Period size: 27 Copynumber: 12.7 Consensus size: 27
56722461 CCCCCAGTTG
* * *
56722471 TAAAATTACCAAAGTACCCCTGGTTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * * **
56722498 TAAAACTACCCAAATATCCTCAATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
**** *
56722525 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * ****
56722552 CAGAATTACCGTTTTA-CCTTCGATTTA
1 TAAAATTACCAAAATACCCTT-GATTTA
*** *
56722579 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * ****
56722606 TAGAATTATCGTTTTA-CCTTCGATTTA
1 TAAAATTACCAAAATACCCTT-GATTTA
* **** **
56722633 TAGAATTACCGTTTTACCCTCAATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* ** * * *
56722660 CAAAATTATTAATACACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* *
56722687 CAAAATTACCAAAATACCCTCGA-TTA
1 TAAAATTACCAAAATACCCTTGATTTA
* *
56722713 GTAAAATTACCAAAATACCCCT-AGTTTG
1 -TAAAATTACCAAAATACCCTTGA-TTTA
* * *
56722741 TAAAATTACTAAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTTGATTTA
56722768 TAAAATTACCAAAATACCCTTGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
*
56722795 TAAAA-TACCGAAATACCC
1 TAAAATTACCAAAATACCC
56722813 CTATAGGGTA
Statistics
Matches: 250, Mismatches: 57, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
26 22 0.09
27 220 0.88
28 8 0.03
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTTGATTTA
Found at i:56722835 original size:27 final size:27
Alignment explanation
Indices: 56722804--56723044 Score: 288
Period size: 27 Copynumber: 8.9 Consensus size: 27
56722794 ATAAAATACC
*
56722804 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
56722831 AAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
56722858 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
56722885 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
56722912 GAAATACCCCTGTAGGGTTA-AATTACT
1 GAAATACCCCTGTAGGG-TAGAATTACT
* *
56722939 GAAATACCCATGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
56722966 GAAATACCCTTATAGGGTAGAAATA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
56722992 CAAAATACCCCTGTAGGGTAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTACT
* * * *
56723020 GAGATACCCATGTGGGGTAAAATTA
1 GAAATACCCCTGTAGGGTAGAATTA
56723045 TCATTTTTCC
Statistics
Matches: 181, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 177 0.98
28 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:56722868 original size:54 final size:54
Alignment explanation
Indices: 56722800--56723028 Score: 327
Period size: 54 Copynumber: 4.2 Consensus size: 54
56722790 ATTTATAAAA
* *
56722800 TACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAT
* * *
56722854 TACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAT
* * *
56722908 TACCGAAATACCCCTGTAGGGTTA-AATTACTGAAATACCCATGTAGGGTAGAAT
1 TACCGAAATACCCCTATAGGG-TAGAATTACTAAAATACCCCTGTAGGGTAGAAT
* *
56722962 TACCGAAATACCCTTATAGGGTAGAAATA-TCAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTATAGGGTAGAATTACT-AAAATACCCCTGTAGGGTAGAAT
*
56723016 TACCGAGATACCC
1 TACCGAAATACCC
56723029 ATGTGGGGTA
Statistics
Matches: 159, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
53 3 0.02
54 154 0.97
55 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (54 bp):
TACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAT
Found at i:56722917 original size:81 final size:81
Alignment explanation
Indices: 56722800--56723044 Score: 339
Period size: 81 Copynumber: 3.0 Consensus size: 81
56722790 ATTTATAAAA
* * *
56722800 TACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATAC
1 TACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATAC
*
56722865 CCCTGTAGGGTAGAAT
66 CCATGTAGGGTAGAAT
* * * * *
56722881 TACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTTA-AATTACTGAAATA
1 TACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGG-TAGAATTACCGAAATA
56722945 CCCATGTAGGGTAGAAT
65 CCCATGTAGGGTAGAAT
* * * *
56722962 TACCGAAATACCCTTATAGGGTAGAAATATCAAAATACCCCTGTAGGGTAGAATTACCGAGATAC
1 TACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATAC
* *
56723027 CCATGTGGGGTAAAAT
66 CCATGTAGGGTAGAAT
56723043 TA
1 TA
56723045 TCATTTTTCC
Statistics
Matches: 142, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.01
81 138 0.97
82 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
TACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATAC
CCATGTAGGGTAGAAT
Found at i:56726762 original size:40 final size:40
Alignment explanation
Indices: 56726526--56726781 Score: 385
Period size: 40 Copynumber: 6.4 Consensus size: 40
56726516 GATGATAACG
56726526 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
56726566 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* *
56726606 GGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
56726646 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
56726686 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
56726726 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
56726766 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
56726782 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 16 0.08
40 186 0.92
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:56731168 original size:33 final size:32
Alignment explanation
Indices: 56731109--56731172 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
56731099 ACGAAGTCAC
*
56731109 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCTAAGCCACCAGAA
*
56731141 CAGATATATATATATGTGG-TGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCT-AAGCCACCAGA
56731173 TTGTAGCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCTAAGCCACCAGAA
Found at i:56735403 original size:40 final size:40
Alignment explanation
Indices: 56735326--56735547 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
56735316 AAACCAAGTA
** * *
56735326 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
56735365 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
56735405 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
56735445 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
56735485 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
56735525 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
56735548 CATCCGAATA
Statistics
Matches: 172, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.08
40 159 0.92
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:56741951 original size:43 final size:43
Alignment explanation
Indices: 56741752--56741949 Score: 225
Period size: 43 Copynumber: 4.6 Consensus size: 43
56741742 TAATTTTTTA
* *
56741752 AAAGGTCATGATTTTTAGTGGCGTTTGTGGGAAAAGCGTCGCT
1 AAAGGTCATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
** * *
56741795 AAAGGTTGTGTTTTTTAGCGGCGTTTGTGGGAAAAGCGTCGCT
1 AAAGGTCATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* * * * *
56741838 AAAGGTCGTGTTTTTTAGCGGCATTAGTGGGAAAAGCGCCACT
1 AAAGGTCATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
** * * * *
56741881 AAAGGTCATGACCTTTAGCGACATTTTTGGTAAAAGCGCCGCT
1 AAAGGTCATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* *
56741924 AAAGATCATGACTTTTAGCGGCGTTT
1 AAAGGTCATGATTTTTAGCGGCGTTT
56741950 TTTTCATAAA
Statistics
Matches: 133, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 133 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (43 bp):
AAAGGTCATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
Found at i:56747595 original size:47 final size:46
Alignment explanation
Indices: 56747459--56747597 Score: 115
Period size: 47 Copynumber: 3.0 Consensus size: 46
56747449 ACCCCTAAGT
** * * *
56747459 GAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTC--GCATTCGCATCCATCTCAGC
* * *
56747505 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGCATTCGC-A--TCCATCTCAGC
56747552 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATCTCA
1 GAACTCGGACTCAACTCAACGAGTTC-G-CATTCGCATCCATCTCA
56747598 ACTAGTTCGG
Statistics
Matches: 74, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 4 0.05
46 27 0.36
47 34 0.46
48 3 0.04
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGCATTCGCATCCATCTCAGC
Found at i:56748065 original size:30 final size:30
Alignment explanation
Indices: 56748031--56748090 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
56748021 ATTTAATACG
*
56748031 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAAGTACACTTTTGCCCCTA
* * *
56748061 AACTTTTGCATAAGTACACTTTTGCCCCTA
1 AACTTTGGAAAAAGTACACTTTTGCCCCTA
56748091 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAAGTACACTTTTGCCCCTA
Found at i:56751211 original size:26 final size:25
Alignment explanation
Indices: 56751141--56751211 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
56751131 CTCTTTTAAT
*
56751141 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTGGATA
*
56751166 AACTGGGGCAAAGCCCTTTTGGGTA
1 AACTGGGGCAAAGCCCTTTTGGATA
*
56751191 AATTGGGGCAAAAGCCCTTTT
1 AACTGGGGC-AAAGCCCTTTT
56751212 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 31 0.74
26 11 0.26
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTGGATA
Found at i:56758990 original size:24 final size:25
Alignment explanation
Indices: 56758957--56759009 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
56758947 GGCCTAGCCT
56758957 TTTTTAAT-AACTAGGGC-AATGCCC
1 TTTTTAATAAACTAGGGCAAAT-CCC
* *
56758981 TTTTTGATAAACTGGGGCAAATCCC
1 TTTTTAATAAACTAGGGCAAATCCC
56759006 TTTT
1 TTTT
56759010 CAGTAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.28
25 15 0.60
26 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (25 bp):
TTTTTAATAAACTAGGGCAAATCCC
Found at i:56765071 original size:17 final size:17
Alignment explanation
Indices: 56765051--56765096 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
56765041 TTTGAATTCC
*
56765051 ATAGCTATTTGATACCT
1 ATAGCTATTAGATACCT
56765068 ATAGCTATTAGATACCT
1 ATAGCTATTAGATACCT
56765085 ATAGCTATTAGA
1 ATAGCTATTAGA
56765097 ATCCAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (17 bp):
ATAGCTATTAGATACCT
Found at i:56768299 original size:33 final size:33
Alignment explanation
Indices: 56768261--56768360 Score: 88
Period size: 33 Copynumber: 3.2 Consensus size: 33
56768251 TTCATACATA
56768261 TTTCATATGTCCACATATGTTCATATACTTACC
1 TTTCATATGTCCACATATGTTCATATACTTACC
* *
56768294 TTTCAT-TCT-CA-ATCATG---ATATACATT-TC
1 TTTCATATGTCCACAT-ATGTTCATATAC-TTACC
***
56768322 AAACATATGTCCACATATGTTCATATACTTACC
1 TTTCATATGTCCACATATGTTCATATACTTACC
56768355 TTTCAT
1 TTTCAT
56768361 TCTCAATCAT
Statistics
Matches: 48, Mismatches: 10, Indels: 18
0.63 0.13 0.24
Matches are distributed among these distances:
28 10 0.21
29 4 0.08
30 7 0.15
31 7 0.15
32 4 0.08
33 16 0.33
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (33 bp):
TTTCATATGTCCACATATGTTCATATACTTACC
Found at i:56768335 original size:61 final size:61
Alignment explanation
Indices: 56768264--56768389 Score: 252
Period size: 61 Copynumber: 2.1 Consensus size: 61
56768254 ATACATATTT
56768264 CATATGTCCACATATGTTCATATACTTACCTTTCATTCTCAATCATGATATACATTTCAAA
1 CATATGTCCACATATGTTCATATACTTACCTTTCATTCTCAATCATGATATACATTTCAAA
56768325 CATATGTCCACATATGTTCATATACTTACCTTTCATTCTCAATCATGATATACATTTCAAA
1 CATATGTCCACATATGTTCATATACTTACCTTTCATTCTCAATCATGATATACATTTCAAA
56768386 CATA
1 CATA
56768390 CCTGAATCGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (61 bp):
CATATGTCCACATATGTTCATATACTTACCTTTCATTCTCAATCATGATATACATTTCAAA
Found at i:56768589 original size:43 final size:43
Alignment explanation
Indices: 56768511--56768665 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 43
56768501 TCCCAGACGT
* * *
56768511 GGTCCTACATGTAATCAAATATCGTTGCCACTGTCCCAAACAA
1 GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAAACAA
* *
56768554 GGTCTTCACATGAAATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTT-ACATGAAATCAAATATCGATGCC-ACTGTCCCAAACAA
** * * **
56768597 GGTCTTACATGTAAATCTCGA-ATCGATACCAAC-GTCCCAGACTT
1 GGTCTTACATG-AAATC-AAATATCGATGCC-ACTGTCCCAAACAA
* *
56768641 GGTCTTACACGAAATCACATATCGA
1 GGTCTTACATGAAATCAAATATCGA
56768666 AAATCCTATG
Statistics
Matches: 92, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
42 6 0.07
43 43 0.47
44 43 0.47
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAAACAA
Found at i:56798883 original size:86 final size:85
Alignment explanation
Indices: 56798787--56798943 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
56798777 TTTCGATATG
* * * *
56798787 TGATTTCATGTGAGACCAC-GTCTGGAACATTGGCATC-A-ATTTGAGATTTACGTGTAAGACCA
1 TGATTTCATGTAAGACC-CTGTATGGAACAGTGGCATCGATATTT-A-A-TTACATGTAAGACCA
*
56798849 TGTCTGGGACATCAGCATCGTATT
62 CGTCTGGGACATCAGCATCGTATT
*
56798873 TGATTTCATGTAAGACCCTGTATGGGACAGTGGCATCGATATTTAATTACATGTAAGACCACGTC
1 TGATTTCATGTAAGACCCTGTATGGAACAGTGGCATCGATATTTAATTACATGTAAGACCACGTC
56798938 TGGGAC
66 TGGGAC
56798944 GTTGGCATTG
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 24 0.39
86 32 0.52
87 2 0.03
88 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (85 bp):
TGATTTCATGTAAGACCCTGTATGGAACAGTGGCATCGATATTTAATTACATGTAAGACCACGTC
TGGGACATCAGCATCGTATT
Found at i:56798899 original size:42 final size:43
Alignment explanation
Indices: 56798834--56798943 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 43
56798824 AATTTGAGAT
* * *
56798834 TTACGTGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGA
1 TTACATGTAAGACCATGTATGGGACAGT-AGCATCGATATTTAA
* * *
56798876 TTTCATGTAAGACCCTGTATGGGACAGTGGCATCGATATTTAA
1 TTACATGTAAGACCATGTATGGGACAGTAGCATCGATATTTAA
* *
56798919 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCATGTATGGGAC
56798944 GTTGGCATTG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TTACATGTAAGACCATGTATGGGACAGTAGCATCGATATTTAA
Found at i:56798950 original size:43 final size:43
Alignment explanation
Indices: 56798779--56798951 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
56798769 ACATAGGATT
* * * * *
56798779 TCGATATGTGATTTCATGTGAGACCACGTCTGGAACATTGGCA
1 TCGATATTTAATTACATGTAAGACCACGTCTGGGACATTGGCA
* * **
56798822 TC-A-ATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCAGCA
1 TCGATATTT-A-A-TTACATGTAAGACCACGTCTGGGACATTGGCA
* * * *
56798866 TCG-TATTTGATTTCATGTAAGACC-CTGTATGGGACAGTGGCA
1 TCGATATTTAATTACATGTAAGACCAC-GTCTGGGACATTGGCA
*
56798908 TCGATATTTAATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTAATTACATGTAAGACCACGTCTGGGACATTGGCA
56798951 T
1 T
56798952 TGTATGAGCC
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
41 3 0.03
42 28 0.28
43 37 0.37
44 28 0.28
45 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGATATTTAATTACATGTAAGACCACGTCTGGGACATTGGCA
Found at i:56806399 original size:29 final size:29
Alignment explanation
Indices: 56806337--56806411 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
56806327 AATTATATTC
* *
56806337 ATATGGCTCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
56806366 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
56806395 TTATGGCCCGTTAGGCC
1 ATATGGCCCATTAGGCC
56806412 TAGCCACATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:56806668 original size:24 final size:24
Alignment explanation
Indices: 56806636--56806703 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
56806626 GTAGCCAAAC
* *
56806636 TTTCAGCTTTTCGGCATTTTGGCT
1 TTTCGGCTTTTCAGCATTTTGGCT
*
56806660 TTTCGGCTTTTCAGCATTTCGGCT
1 TTTCGGCTTTTCAGCATTTTGGCT
*
56806684 TTTCGGCATTTCAGC-TTTTG
1 TTTCGGCTTTTCAGCATTTTG
56806704 CCGATACTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 4 0.10
24 35 0.90
ACGTcount: A:0.09, C:0.22, G:0.21, T:0.49
Consensus pattern (24 bp):
TTTCGGCTTTTCAGCATTTTGGCT
Found at i:56806669 original size:8 final size:8
Alignment explanation
Indices: 56806636--56806702 Score: 73
Period size: 8 Copynumber: 8.4 Consensus size: 8
56806626 GTAGCCAAAC
*
56806636 TTTCAGCT
1 TTTCGGCT
56806644 TTTCGGCAT
1 TTTCGGC-T
56806653 TTT-GGCT
1 TTTCGGCT
56806660 TTTCGGCT
1 TTTCGGCT
* *
56806668 TTTCAGCA
1 TTTCGGCT
56806676 TTTCGGCT
1 TTTCGGCT
*
56806684 TTTCGGCA
1 TTTCGGCT
*
56806692 TTTCAGCT
1 TTTCGGCT
56806700 TTT
1 TTT
56806703 GCCGATACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
7 4 0.08
8 41 0.84
9 4 0.08
ACGTcount: A:0.09, C:0.22, G:0.19, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:56807932 original size:16 final size:16
Alignment explanation
Indices: 56807911--56807944 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
56807901 AGAAAATTCA
56807911 GGATTTCAGGATTCTT
1 GGATTTCAGGATTCTT
*
56807927 GGATTTCAGGATTTTT
1 GGATTTCAGGATTCTT
56807943 GG
1 GG
56807945 GGCGTTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.09, G:0.29, T:0.44
Consensus pattern (16 bp):
GGATTTCAGGATTCTT
Found at i:56818181 original size:57 final size:56
Alignment explanation
Indices: 56818120--56818237 Score: 139
Period size: 57 Copynumber: 2.1 Consensus size: 56
56818110 CACATACCTA
* *
56818120 TATATGGCCCACTAGACCC-AATTATATTCACATGGCCCATTAGACCCAAATCATAAT
1 TATATGGCCCACTAGACCCAAATCACATTCACATGG-CCATTAGACCCAAATCA-AAT
** * * * *
56818177 TATATGGCCCTTTAGGCCCAAATCACATTTATATGGCCATTAGACCCAAATCACAT
1 TATATGGCCCACTAGACCCAAATCACATTCACATGGCCATTAGACCCAAATCAAAT
56818233 TATAT
1 TATAT
56818238 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
56 7 0.13
57 33 0.63
58 12 0.23
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (56 bp):
TATATGGCCCACTAGACCCAAATCACATTCACATGGCCATTAGACCCAAATCAAAT
Found at i:56818228 original size:28 final size:29
Alignment explanation
Indices: 56818120--56818237 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
56818110 CACATACCTA
* * *
56818120 TATATGGCCCACTAGACCC-AATTATATT
1 TATATGGCCCATTAGACCCAAATCACATT
* * * *
56818148 CACATGGCCCATTAGACCCAAATCATAAT
1 TATATGGCCCATTAGACCCAAATCACATT
* *
56818177 TATATGGCCCTTTAGGCCCAAATCACATT
1 TATATGGCCCATTAGACCCAAATCACATT
56818206 TATATGG-CCATTAGACCCAAATCACA-T
1 TATATGGCCCATTAGACCCAAATCACATT
56818233 TATAT
1 TATAT
56818238 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 6 0.08
28 33 0.43
29 37 0.49
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGACCCAAATCACATT
Found at i:56818476 original size:8 final size:8
Alignment explanation
Indices: 56818449--56818491 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
56818439 ATAGCCAAAC
*
56818449 TTTCAGCT
1 TTTCGGCT
* *
56818457 TTTCGACA
1 TTTCGGCT
56818465 TTTCGGCT
1 TTTCGGCT
56818473 TTTCGGCT
1 TTTCGGCT
*
56818481 TTTCGACT
1 TTTCGGCT
56818489 TTT
1 TTT
56818492 GCCGATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.09, C:0.23, G:0.16, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:56831329 original size:11 final size:11
Alignment explanation
Indices: 56831313--56831337 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
56831303 GACTGTTACT
56831313 TGTCATCCTTG
1 TGTCATCCTTG
56831324 TGTCATCCTTG
1 TGTCATCCTTG
56831335 TGT
1 TGT
56831338 AATTAATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.24, G:0.20, T:0.48
Consensus pattern (11 bp):
TGTCATCCTTG
Found at i:56832979 original size:76 final size:76
Alignment explanation
Indices: 56832853--56833005 Score: 279
Period size: 76 Copynumber: 2.0 Consensus size: 76
56832843 CTATATTTCT
* *
56832853 CAATAGATTTATTCAAGATCCTCCTTTTGTTTCATTATTTCAATAAAAATATTACATGCAAAATC
1 CAATAGATTTATTCAAGATCCTCATTTTATTTCATTATTTCAATAAAAATATTACATGCAAAATC
56832918 GTTGTCGACCA
66 GTTGTCGACCA
*
56832929 CAATAGATTTATTCAAGATCCTCATTTTATTTCATTATTTCAATAAAAATATTGCATGCAAAATC
1 CAATAGATTTATTCAAGATCCTCATTTTATTTCATTATTTCAATAAAAATATTACATGCAAAATC
56832994 GTTGTCGACCA
66 GTTGTCGACCA
56833005 C
1 C
56833006 TTTTATTATT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (76 bp):
CAATAGATTTATTCAAGATCCTCATTTTATTTCATTATTTCAATAAAAATATTACATGCAAAATC
GTTGTCGACCA
Found at i:56842664 original size:33 final size:33
Alignment explanation
Indices: 56842627--56842690 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
56842617 CCAATGTATG
*
56842627 GGCTTAAATGGTATACTTATTCTTTTGTATAAA
1 GGCTTAAATGGTATAATTATTCTTTTGTATAAA
*
56842660 GGCTTAAATTGTATAATTATTCTTTTGTATA
1 GGCTTAAATGGTATAATTATTCTTTTGTATA
56842691 TGGCCATGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (33 bp):
GGCTTAAATGGTATAATTATTCTTTTGTATAAA
Found at i:56844581 original size:117 final size:116
Alignment explanation
Indices: 56844369--56844586 Score: 328
Period size: 117 Copynumber: 1.9 Consensus size: 116
56844359 GTTTTGTGGC
* *
56844369 TAAAGATGAATTGACGGATAAAACTATAATTGAGTTATCGCACTATAAACGTAAGACCATGGTTG
1 TAAAGATGAATTGACGGATAAAACCATAACTGAGTTATCGCACTATAAACGTAAGACCATGGTTG
*
56844434 GACCATGTCAATATTTATATGTAAGACCATAATTGGGTTATGACATTAATG
66 GACCATGGCAATATTTATATGTAAGACCATAATTGGGTTATGACATTAATG
* * * *
56844485 TAAAGGATGAATTGACGGATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTT
1 TAAA-GATGAATTGACGGATAAAACCATAACTGAGTTATCGCACTATAAACGTAAGACCATGGTT
* * * *
56844550 GGACCATGGCAGTGTTTATATGTAAGGCCATAGTTGG
65 GGACCATGGCAATATTTATATGTAAGACCATAATTGG
56844587 ACTATGGCAT
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
116 4 0.04
117 86 0.96
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (116 bp):
TAAAGATGAATTGACGGATAAAACCATAACTGAGTTATCGCACTATAAACGTAAGACCATGGTTG
GACCATGGCAATATTTATATGTAAGACCATAATTGGGTTATGACATTAATG
Found at i:56849374 original size:20 final size:20
Alignment explanation
Indices: 56849349--56849388 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
56849339 TAAATATTTT
56849349 TTTCTATGAAAATTGAGTAA
1 TTTCTATGAAAATTGAGTAA
56849369 TTTCTATGAAAATTGAGTAA
1 TTTCTATGAAAATTGAGTAA
56849389 AATTTAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (20 bp):
TTTCTATGAAAATTGAGTAA
Found at i:56853729 original size:21 final size:21
Alignment explanation
Indices: 56853703--56853743 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
56853693 AGACGAGCAA
* *
56853703 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
56853724 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
56853744 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:56870919 original size:67 final size:67
Alignment explanation
Indices: 56870810--56870996 Score: 232
Period size: 67 Copynumber: 2.8 Consensus size: 67
56870800 ATGGGCTGTA
* * * * * **
56870810 ATGGGGTATAATGTGTAAAACTATAGCTCGGCTATGGTAACATAGAGAGTTTGCCAAGACATTAA
1 ATGGGATATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAAGACATTAA
56870875 AC
66 AC
* *
56870877 ATGGGATATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGGGTCCACCAAGACATTAA
1 ATGGGATATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAAGACATTAA
56870942 AC
66 AC
* * * * *
56870944 AT-GGAGTATGATGTGTAAGACCATATCTCGACTATGACATCATATAGAGTTCA
1 ATGGGA-TATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCA
56870997 TCGAGGCAAT
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
66 3 0.03
67 100 0.97
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (67 bp):
ATGGGATATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAAGACATTAA
AC
Found at i:56883152 original size:11 final size:11
Alignment explanation
Indices: 56883136--56883166 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
56883126 GCTCTCTTGT
56883136 ACACATAGTGA
1 ACACATAGTGA
56883147 ACACATAGTGA
1 ACACATAGTGA
*
56883158 ACACTTAGT
1 ACACATAGT
56883167 ACTACCCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (11 bp):
ACACATAGTGA
Found at i:56885942 original size:32 final size:32
Alignment explanation
Indices: 56885898--56885991 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 32
56885888 TCAAGCCCAT
*
56885898 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
56885930 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
*
56885962 TGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TGGGCC-AAG-CCC-TATTCAGATAACAGT
56885992 ATGGCCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 13 0.27
34 11 0.22
35 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:56886362 original size:25 final size:25
Alignment explanation
Indices: 56886311--56886362 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
56886301 CATTTAGGTC
***
56886311 AATTTAACCCTAGGGGTATTCCGGT
1 AATTTAACCCTAGGGGTAAAACGGT
* *
56886336 AATTTATCCCTAGGGGTAAAACTGT
1 AATTTAACCCTAGGGGTAAAACGGT
56886361 AA
1 AA
56886363 ATTTTCCACT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (25 bp):
AATTTAACCCTAGGGGTAAAACGGT
Found at i:56893771 original size:32 final size:35
Alignment explanation
Indices: 56893734--56893813 Score: 87
Period size: 32 Copynumber: 2.4 Consensus size: 35
56893724 GTCTAAGCCC
*
56893734 ATTCAGATAACAGTGATACTGGGC-AGAG-CCCTT
1 ATTCAGATAACAGTGAAACTGGGCTAGAGCCCCTT
* * **
56893767 -TTCAGATTAC-GTTAAACTGGGCTTTAGCCCCTT
1 ATTCAGATAACAGTGAAACTGGGCTAGAGCCCCTT
56893800 ATTCAGATAACAGT
1 ATTCAGATAACAGT
56893814 ATGGCCCATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
31 10 0.27
32 11 0.30
33 5 0.14
34 9 0.24
35 2 0.05
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (35 bp):
ATTCAGATAACAGTGAAACTGGGCTAGAGCCCCTT
Found at i:56902077 original size:21 final size:21
Alignment explanation
Indices: 56902053--56902095 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
56902043 CTCGTGATTT
* *
56902053 TATCCCTTAAAAATTTTCTGA
1 TATCCCCTAAAAATTTCCTGA
56902074 TATCCCCTAAAAATTTCCTGA
1 TATCCCCTAAAAATTTCCTGA
56902095 T
1 T
56902096 TTTATCACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (21 bp):
TATCCCCTAAAAATTTCCTGA
Found at i:56903118 original size:10 final size:11
Alignment explanation
Indices: 56903099--56903131 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
56903089 ACTTGTTCTT
56903099 AAAGAAAAGAA
1 AAAGAAAAGAA
56903110 AAA-AAAAGAA
1 AAAGAAAAGAA
56903120 AAAGAAAA-AA
1 AAAGAAAAGAA
56903130 AA
1 AA
56903132 CTATGTATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 14 0.67
11 7 0.33
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:56903119 original size:15 final size:16
Alignment explanation
Indices: 56903099--56903131 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
56903089 ACTTGTTCTT
56903099 AAAG-AAAAGAAAAAA
1 AAAGAAAAAGAAAAAA
56903114 AAAGAAAAAGAAAAAA
1 AAAGAAAAAGAAAAAA
56903130 AA
1 AA
56903132 CTATGTATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAA
Found at i:56904197 original size:23 final size:23
Alignment explanation
Indices: 56904168--56904214 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
56904158 CAGAGAAAAG
56904168 GGGGATTCATCATCAAGACTAAA
1 GGGGATTCATCATCAAGACTAAA
56904191 GGGGATTCATCATCAAGACTAAA
1 GGGGATTCATCATCAAGACTAAA
56904214 G
1 G
56904215 ATCTCTCCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (23 bp):
GGGGATTCATCATCAAGACTAAA
Found at i:56915555 original size:15 final size:15
Alignment explanation
Indices: 56915496--56915566 Score: 72
Period size: 15 Copynumber: 4.7 Consensus size: 15
56915486 TGATATTTTA
* * *
56915496 TCTTAGATTTCTGTA
1 TCTTGGATTTCTTTG
*
56915511 TCTTGGATTTCTTTA
1 TCTTGGATTTCTTTG
*
56915526 TCTAGGATTTCTTTG
1 TCTTGGATTTCTTTG
56915541 TCTTGGACTTT-TTTG
1 TCTTGGA-TTTCTTTG
*
56915556 TCTTGGTTTTC
1 TCTTGGATTTC
56915567 ATGTCATTTC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
14 3 0.06
15 42 0.88
16 3 0.06
ACGTcount: A:0.11, C:0.14, G:0.17, T:0.58
Consensus pattern (15 bp):
TCTTGGATTTCTTTG
Found at i:56917785 original size:14 final size:16
Alignment explanation
Indices: 56917764--56917803 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
56917754 TGCAAGAAAC
56917764 GATGATATATGAAA-A
1 GATGATATATGAAATA
*
56917779 G-TGATATAGGAAATA
1 GATGATATATGAAATA
56917794 GATGATATAT
1 GATGATATAT
56917804 ATATGTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 11 0.52
15 3 0.14
16 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (16 bp):
GATGATATATGAAATA
Found at i:56923785 original size:45 final size:44
Alignment explanation
Indices: 56923701--56923785 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
56923691 ATGTAATCTG
* *
56923701 AACTCATTGAGTTGTGTCTGAGTTCATGATTTATGTGACATCCA
1 AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCA
* *
56923745 AACTCATTGAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
56923786 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 15 0.42
45 21 0.58
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCA
Found at i:56924045 original size:21 final size:21
Alignment explanation
Indices: 56924019--56924061 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
56924009 AAAGAGAAGT
56924019 TCAATAAGAAATCTTGATGAA
1 TCAATAAGAAATCTTGATGAA
56924040 TCAATAAGAAATCTTGATGAA
1 TCAATAAGAAATCTTGATGAA
56924061 T
1 T
56924062 ACGTCAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (21 bp):
TCAATAAGAAATCTTGATGAA
Found at i:56934075 original size:15 final size:15
Alignment explanation
Indices: 56934055--56934090 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
56934045 CATGAGTGGG
56934055 TTAATCCTAAATGCC
1 TTAATCCTAAATGCC
*
56934070 TTAATCCTAAGTGCC
1 TTAATCCTAAATGCC
56934085 TTAATC
1 TTAATC
56934091 ACTTTGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (15 bp):
TTAATCCTAAATGCC
Found at i:56934752 original size:16 final size:17
Alignment explanation
Indices: 56934715--56934754 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
56934705 TTTTTAAAAG
56934715 AAAAACAAATGAATCTT
1 AAAAACAAATGAATCTT
*
56934732 AAAAACAATTGAATCTT
1 AAAAACAAATGAATCTT
56934749 AAAAAC
1 AAAAAC
56934755 TTAATGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAAACAAATGAATCTT
Found at i:56946685 original size:22 final size:22
Alignment explanation
Indices: 56946596--56946686 Score: 92
Period size: 22 Copynumber: 4.1 Consensus size: 22
56946586 CACTAAGTCA
* *
56946596 ACAGGATGGCTCAACGCCGTAG
1 ACAGGACGGCTCAACGCCATAG
* *
56946618 ATAGGACGGCTCAACGACATAG
1 ACAGGACGGCTCAACGCCATAG
** * *
56946640 ACTTGACGGCTCAATGCCGTAG
1 ACAGGACGGCTCAACGCCATAG
* *
56946662 ACAGGATGGCTCAATGCCATAG
1 ACAGGACGGCTCAACGCCATAG
56946684 ACA
1 ACA
56946687 AGAAGGCTAA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 55 1.00
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.16
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCCATAG
Found at i:56946694 original size:22 final size:22
Alignment explanation
Indices: 56946647--56946694 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
56946637 TAGACTTGAC
* * *
56946647 GGCTCAATGCCGTAGACAGGAT
1 GGCTCAATGCCATAGACAAGAA
56946669 GGCTCAATGCCATAGACAAGAA
1 GGCTCAATGCCATAGACAAGAA
56946691 GGCT
1 GGCT
56946695 AAAGGCCGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.17
Consensus pattern (22 bp):
GGCTCAATGCCATAGACAAGAA
Found at i:56946703 original size:44 final size:44
Alignment explanation
Indices: 56946611--56946704 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
56946601 ATGGCTCAAC
* ** * * *
56946611 GCCGTAGATAGGACGGCTCAACGACATAGACTTGACGGCTCAAT
1 GCCGTAGACAGGACGGCTCAACGACATAGACAAGAAGGCTAAAG
* * *
56946655 GCCGTAGACAGGATGGCTCAATGCCATAGACAAGAAGGCTAAAG
1 GCCGTAGACAGGACGGCTCAACGACATAGACAAGAAGGCTAAAG
56946699 GCCGTA
1 GCCGTA
56946705 AATATCACAG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.32, C:0.23, G:0.29, T:0.16
Consensus pattern (44 bp):
GCCGTAGACAGGACGGCTCAACGACATAGACAAGAAGGCTAAAG
Found at i:56954316 original size:14 final size:14
Alignment explanation
Indices: 56954297--56954327 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
56954287 CTCTTACCAG
56954297 TACACCTTGAATTT
1 TACACCTTGAATTT
56954311 TACACCTTGAATTT
1 TACACCTTGAATTT
56954325 TAC
1 TAC
56954328 CTTTTAGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (14 bp):
TACACCTTGAATTT
Found at i:56956936 original size:40 final size:40
Alignment explanation
Indices: 56956837--56957027 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
56956827 TGGATGAAAA
* * * * **
56956837 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
56956877 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
56956916 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
56956956 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
56956996 CCGGGCTATGTACCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
56957028 AGCTATATCC
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
39 33 0.24
40 102 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:56965451 original size:27 final size:26
Alignment explanation
Indices: 56965403--56965462 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
56965393 GCGAGGCTGC
*
56965403 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
56965430 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
56965456 CAGATAT
1 CAGATAT
56965463 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:56971710 original size:46 final size:45
Alignment explanation
Indices: 56971525--56971710 Score: 141
Period size: 46 Copynumber: 4.0 Consensus size: 45
56971515 GCCCATAAGC
* ** * *
56971525 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-C-TAGT
* *
56971570 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AGT
* * * *
56971617 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAGT
56971663 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
56971709 GA
1 GA
56971711 CATGTCACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 27
0.73 0.09 0.18
Matches are distributed among these distances:
44 10 0.09
45 29 0.26
46 33 0.29
47 32 0.28
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:56974114 original size:30 final size:30
Alignment explanation
Indices: 56974070--56974158 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
56974060 CAAAGATAAC
56974070 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
56974099 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
56974129 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
56974159 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:56974118 original size:15 final size:15
Alignment explanation
Indices: 56974070--56974149 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
56974060 CAAAGATAAC
*
56974070 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
56974084 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
56974099 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
56974114 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
56974129 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
56974144 AAGAAA
1 AAGAAA
56974150 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:56974158 original size:15 final size:15
Alignment explanation
Indices: 56974081--56974158 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
56974071 AGAAAACCGA
56974081 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
56974096 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
56974110 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
56974125 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
56974141 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
56974156 ATA
1 ATA
56974159 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:56977191 original size:46 final size:46
Alignment explanation
Indices: 56977070--56977197 Score: 186
Period size: 45 Copynumber: 2.8 Consensus size: 46
56977060 TGTAACCCGC
* * * *
56977070 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
56977116 CCATAGGTGAACT-GGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
56977161 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
56977198 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 40 0.55
46 33 0.45
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:56986969 original size:54 final size:54
Alignment explanation
Indices: 56986788--56986969 Score: 186
Period size: 55 Copynumber: 3.4 Consensus size: 54
56986778 TGTCTTGACG
* * * * *
56986788 TGGTCTTACGTGGTATCTTTGCCTTAT-GAACTCACCATTGCCATGCCTTAGCA
1 TGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGCA
* * ** * * *
56986841 TGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGTCTTGACA
1 TGGTCTTACATGGTATCCTTGCCTTATAG-AACTTACCAATGCCATGCCTTGGCA
** * * *
56986896 TGGTCTTACATAATTTCCTTGCCTTGTAGAACTTACCAATGCCATGCCTTGGCC
1 TGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGCA
*
56986950 TGGTCTTACTTGGTATCCTT
1 TGGTCTTACATGGTATCCTT
56986970 AAACCCTAAT
Statistics
Matches: 101, Mismatches: 26, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 25 0.25
54 36 0.36
55 40 0.40
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (54 bp):
TGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGCA
Found at i:56991850 original size:34 final size:34
Alignment explanation
Indices: 56991790--56991856 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
56991780 TGTTACTGTC
* *
56991790 ACTGAAATGGGCTAAGGCCCGCACTGATACTGAT
1 ACTGAAATGGGCTAAGGCCCGAACTGAAACTGAT
* * *
56991824 ACTGTAATGGGCTTAGGCCCTAACTGAAACTGA
1 ACTGAAATGGGCTAAGGCCCGAACTGAAACTGA
56991857 ACTATTACTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (34 bp):
ACTGAAATGGGCTAAGGCCCGAACTGAAACTGAT
Found at i:56998196 original size:19 final size:19
Alignment explanation
Indices: 56998174--56998211 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
56998164 TTAAATGATG
56998174 GGTTTTTGGATAAATTATA
1 GGTTTTTGGATAAATTATA
*
56998193 GGTTTTTGGATATATTATA
1 GGTTTTTGGATAAATTATA
56998212 ATAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (19 bp):
GGTTTTTGGATAAATTATA
Found at i:57000043 original size:25 final size:25
Alignment explanation
Indices: 57000015--57000064 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
57000005 ACATTAATGA
57000015 ATGAGCTTTTCTACTTTTGTGATTT
1 ATGAGCTTTTCTACTTTTGTGATTT
57000040 ATGAGCTTTTCTACTTTTGTGATTT
1 ATGAGCTTTTCTACTTTTGTGATTT
57000065 TCACATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.56
Consensus pattern (25 bp):
ATGAGCTTTTCTACTTTTGTGATTT
Found at i:57007195 original size:7 final size:7
Alignment explanation
Indices: 57007175--57007204 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
57007165 TTGAAGAATA
57007175 AGGGATG
1 AGGGATG
57007182 TAGGGATG
1 -AGGGATG
57007190 AGGGATG
1 AGGGATG
57007197 AGGGATG
1 AGGGATG
57007204 A
1 A
57007205 TTGAAATGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.30, C:0.00, G:0.53, T:0.17
Consensus pattern (7 bp):
AGGGATG
Found at i:57010810 original size:40 final size:40
Alignment explanation
Indices: 57010755--57010945 Score: 276
Period size: 40 Copynumber: 4.8 Consensus size: 40
57010745 CGGATGATAA
*
57010755 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
57010795 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
57010835 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
57010875 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
57010915 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
57010946 AGCTATATCC
Statistics
Matches: 137, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 8 0.06
40 129 0.94
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:57024541 original size:68 final size:68
Alignment explanation
Indices: 57024374--57024549 Score: 150
Period size: 68 Copynumber: 2.6 Consensus size: 68
57024364 TAGTACCACT
* * * * *
57024374 CATGCGACCTAGC--CA-ATTTGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
57024436 CACG
65 CACA
* * *
57024440 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
57024502 ATCACA
63 ATCACA
*
57024508 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
57024550 ACACATGATG
Statistics
Matches: 90, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
66 13 0.14
67 1 0.01
68 35 0.39
69 9 0.10
70 6 0.07
71 26 0.29
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:57030187 original size:68 final size:64
Alignment explanation
Indices: 57030063--57030219 Score: 181
Period size: 68 Copynumber: 2.4 Consensus size: 64
57030053 TTCACCTGGA
* * * *
57030063 ACCACGCATGCGACCTAGCTACATATATTCCGTAGCTCTCTTGTCTACATGGTGTGCACATAGT
1 ACCACACATGCGACCTAGCTACATATATTCCATAGCTCTCTTGTCTACATGATGTGCACATAGC
* * *
57030127 ATCACCCATGCGACCTAGCTACATCATAATGTCTCATAGCTCTCTTGTAC-ACATGATGTGCACT
1 ACCACACATGCGACCTAGCTACAT-AT-AT-TC-CATAGCTCTCTTGT-CTACATGATGTGCACA
57030191 TAGC
61 TAGC
* *
57030195 ACCATACATGTGACCTAGCTACATA
1 ACCACACATGCGACCTAGCTACATA
57030220 CCATCTGTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
64 22 0.28
65 2 0.03
66 2 0.03
67 3 0.04
68 48 0.62
69 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (64 bp):
ACCACACATGCGACCTAGCTACATATATTCCATAGCTCTCTTGTCTACATGATGTGCACATAGC
Found at i:57037807 original size:42 final size:43
Alignment explanation
Indices: 57037705--57037831 Score: 159
Period size: 44 Copynumber: 2.9 Consensus size: 43
57037695 ATGTGTTATT
* **
57037705 GTGTAAGACAATGTCTGGGATGTTGGCATCG-ACTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGATTTAC
57037749 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTAC
* **
57037791 GTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTTGATT
1 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATT
57037832 ACCTGTGGGA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
42 29 0.39
43 15 0.20
44 30 0.40
45 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTAC
Found at i:57037827 original size:43 final size:43
Alignment explanation
Indices: 57037705--57037831 Score: 143
Period size: 42 Copynumber: 2.9 Consensus size: 43
57037695 ATGTGTTATT
* * *
57037705 GTGTAAGACAATGTCTGGGA-TGTTGGCATCG-ACTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACAG-AGGCATCGTA-TT-TGATTTAC
**
57037749 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGTATTTGATTTAC
*
57037791 GTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTTGATT
1 GTGTAAGACCATGTCTGGGACAGAGGCATCG-TATTTGATT
57037832 ACCTGTGGGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
42 29 0.39
43 15 0.20
44 29 0.39
45 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGAGGCATCGTATTTGATTTAC
Found at i:57044611 original size:46 final size:44
Alignment explanation
Indices: 57044471--57044611 Score: 117
Period size: 46 Copynumber: 3.0 Consensus size: 44
57044461 GCCCATAAGC
* *
57044471 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * * *
57044518 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
57044564 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
57044610 GA
1 GA
57044612 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:57047669 original size:44 final size:42
Alignment explanation
Indices: 57047606--57047711 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 42
57047596 GTGTTATCGT
* *
57047606 GTAAGACCACGTCTAGGACACTGA-CATCG-ACTTATGATTTACGA
1 GTAAGACCATGTCTGGGACA-TGATCATCGTA-TT-TGATTT-CGA
* *
57047650 GTAAGACCATGTCTGGGACATTATCATCGTATTTGATTTCGT
1 GTAAGACCATGTCTGGGACATGATCATCGTATTTGATTTCGA
57047692 GTAAGACCATGTCTGGGACA
1 GTAAGACCATGTCTGGGACA
57047712 AAGGCATCGA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 22 0.39
43 8 0.14
44 25 0.45
45 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACATGATCATCGTATTTGATTTCGA
Found at i:57047730 original size:43 final size:43
Alignment explanation
Indices: 57047602--57047752 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
57047592 ATATGTGTTA
* **
57047602 TCGTGTAAGACCACGTCTAGGACACTGACATCGACT-TATGATT
1 TCGTGTAAGACCACGTCTGGGACAAAGACATCGA-TATATGATT
* * * * *
57047645 TACGAGTAAGACCATGTCTGGGACATTA-TCATCG-TATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACA-AAGACATCGATATATGATT
* * *
57047688 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATATCTGATT
1 TCGTGTAAGACCACGTCTGGGACAAAGACATCGATATATGATT
* *
57047731 ACATGTAAGACCACGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGA
57047753 TGTTGGCATT
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.31
43 35 0.39
44 25 0.28
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACAAAGACATCGATATATGATT
Found at i:57050734 original size:16 final size:17
Alignment explanation
Indices: 57050702--57050737 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
57050692 ATAAAAAAAG
*
57050702 TTTGGGATTTCGGGATT
1 TTTGGGATTTCGAGATT
57050719 TTTGGG-TTTCGAGATT
1 TTTGGGATTTCGAGATT
57050735 TTT
1 TTT
57050738 AGGGCATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.11, C:0.06, G:0.31, T:0.53
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:57053387 original size:27 final size:25
Alignment explanation
Indices: 57053357--57053408 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
57053347 ATTTGACACC
57053357 TAGGGGTAATTCGATCAATTTCTCCCT
1 TAGGGGTAATTCGAT-AATTT-TCCCT
* *
57053384 TAGGGGTATTTCGGTAATTTTCCCT
1 TAGGGGTAATTCGATAATTTTCCCT
57053409 AGATATGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 5 0.22
27 13 0.57
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (25 bp):
TAGGGGTAATTCGATAATTTTCCCT
Found at i:57053749 original size:29 final size:28
Alignment explanation
Indices: 57053692--57053777 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
57053682 TACCTGTATC
* * *
57053692 TGGCCTATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
57053720 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
57053749 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
57053777 T
1 T
57053778 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:57057021 original size:40 final size:40
Alignment explanation
Indices: 57056964--57057220 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
57056954 CGGATGATAA
* * * *
57056964 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
57057004 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57057044 CCGGGCTAAGTACCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57057084 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57057124 CCAGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57057164 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
57057203 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57057221 TACTTGGCTT
Statistics
Matches: 190, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 160 0.84
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57065125 original size:40 final size:40
Alignment explanation
Indices: 57065068--57065305 Score: 310
Period size: 40 Copynumber: 6.1 Consensus size: 40
57065058 CGGATGATAA
* * *
57065068 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
57065108 CCGGGCTAATTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57065148 CCGGGCTAAGT--CGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57065186 CCGGGCTAAGTCCCGAAGGCATTTGT--GAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57065224 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57065264 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
57065303 CCG
1 CCG
57065306 TTAAATCCCG
Statistics
Matches: 176, Mismatches: 16, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
38 72 0.41
39 17 0.10
40 87 0.49
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57065203 original size:78 final size:78
Alignment explanation
Indices: 57065068--57065305 Score: 295
Period size: 78 Copynumber: 3.0 Consensus size: 78
57065058 CGGATGATAA
* * * ** * *
57065068 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAATTCTCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
57065133 TGCGAGTTACTATAT
65 TGCGAG-TACTATAT
*
57065148 CCGGGCTAAGT-CGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGT
57065212 --GAGCTACTATAT
66 GCGAG-TACTATAT
* * *
57065224 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
57065288 AGCGAGTAGCTATAT
65 TGCGAGTA-CTATAT
57065303 CCG
1 CCG
57065306 TTAAATCCCG
Statistics
Matches: 139, Mismatches: 14, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
76 22 0.16
77 3 0.02
78 91 0.65
79 12 0.09
80 11 0.08
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTACTATAT
Found at i:57066775 original size:16 final size:17
Alignment explanation
Indices: 57066743--57066781 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
57066733 ACAAAGAAAG
57066743 TTTGGGATTTCAGGATT
1 TTTGGGATTTCAGGATT
57066760 TTTGGG-TTTC-GAGATT
1 TTTGGGATTTCAG-GATT
57066776 TTTGGG
1 TTTGGG
57066782 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 14 0.67
17 6 0.29
ACGTcount: A:0.13, C:0.05, G:0.33, T:0.49
Consensus pattern (17 bp):
TTTGGGATTTCAGGATT
Found at i:57069765 original size:28 final size:29
Alignment explanation
Indices: 57069733--57069847 Score: 155
Period size: 29 Copynumber: 4.0 Consensus size: 29
57069723 TACCTGTATC
* *
57069733 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
57069761 TGGCCCATTAGGCCCAAATCACATGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
57069790 TGGCCCATTAGGCCCAAATTACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
57069819 TGGCCCGTTAGGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
57069847 T
1 T
57069848 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 27 0.35
29 50 0.64
30 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:57069788 original size:57 final size:57
Alignment explanation
Indices: 57069727--57069841 Score: 160
Period size: 57 Copynumber: 2.0 Consensus size: 57
57069717 TTCACATACC
* *
57069727 TGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC-AATCACA
* * * *
57069784 TGTATATGGCCCATTAGGCCCAAATTACATTTATATGGCCCGTTAGGCCCAATCACA
1 TGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATCACA
57069841 T
1 T
57069842 TCATATTCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 27 0.53
58 24 0.47
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (57 bp):
TGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATCACA
Found at i:57070735 original size:28 final size:29
Alignment explanation
Indices: 57070703--57070760 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
57070693 TACCTGTATC
*
57070703 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
*
57070731 TGGCCCATTAGGCCCAAATCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
57070760 T
1 T
57070761 TCATGCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:57072244 original size:37 final size:37
Alignment explanation
Indices: 57072185--57072285 Score: 157
Period size: 37 Copynumber: 2.7 Consensus size: 37
57072175 AGCTCAGACG
* *
57072185 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
57072222 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
57072259 TACTGTCCACACGTAGTCATCGGGTCT
1 AAATCTCCACACGTAGTCATCGGGTCT
57072286 CACGCGGAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:57072547 original size:47 final size:47
Alignment explanation
Indices: 57072456--57072782 Score: 501
Period size: 47 Copynumber: 7.0 Consensus size: 47
57072446 TTTCACACTA
* * * * *
57072456 GCCATTCGGCTTTACCACATATATGCCTGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * * *
57072503 GCCACTCAGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
57072550 GCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
57072597 GCCATTCCGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
57072644 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
57072691 GCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
57072738 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
57072783 AAAATCCTAA
Statistics
Matches: 254, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 254 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:57076615 original size:40 final size:40
Alignment explanation
Indices: 57076559--57076868 Score: 512
Period size: 40 Copynumber: 7.8 Consensus size: 40
57076549 AGCATGATTT
** * *
57076559 CTCTTCGGGACCTAGCCCGAATACATCACTAGCACGAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
57076599 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
* * *
57076639 CTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
**
57076679 CTCTTCGGGATTTAGCCCGGATATATCACTAGCAAAAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
57076719 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
*
57076759 CTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
*
57076799 CTCTTCGTGATTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
*
57076839 CTCTTCAGGATTTAGCCCGGATATATCACT
1 CTCTTCGGGATTTAGCCCGGATATATCACT
57076869 CTCAATTCTC
Statistics
Matches: 251, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 251 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATG
Found at i:57078193 original size:37 final size:37
Alignment explanation
Indices: 57078134--57078234 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
57078124 AGCTTAGACG
* *
57078134 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
57078171 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * * *
57078208 TAGTCTTCACACATAGTCATCGGGTCT
1 AAATCTCCACACGTAGTCATCGGGTCT
57078235 CACGCGGAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:57078457 original size:47 final size:47
Alignment explanation
Indices: 57078405--57078681 Score: 419
Period size: 47 Copynumber: 5.9 Consensus size: 47
57078395 TTTCACACTA
* * * *
57078405 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
57078452 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
57078499 GCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
57078546 GCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACAAAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
57078593 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
57078640 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCA
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57078682 TATAAAATCC
Statistics
Matches: 211, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 211 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:57078469 original size:25 final size:25
Alignment explanation
Indices: 57078441--57078516 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
57078431 ATGTTCATAT
57078441 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* * *
57078466 TCA-CACATAT-G-CATGC-TCACGT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
57078488 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
57078513 TCAC
1 TCAC
57078517 GTATATGCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 5 0.14
23 12 0.32
24 12 0.32
25 8 0.22
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.29
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:57078563 original size:22 final size:22
Alignment explanation
Indices: 57078537--57078613 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
57078527 GTTCACATTC
57078537 ATCACATAGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
* * *
57078559 ATCACGTATATG-CATGTTC-ACATT
1 ATCAC--ATAGGCCA--TTCGGCCTT
*
57078583 CATCACAAAGGCCATTCGGCCTT
1 -ATCACATAGGCCATTCGGCCTT
57078606 ATCACATA
1 ATCACATA
57078614 TATGCATGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 9 0.22
25 8 0.20
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (22 bp):
ATCACATAGGCCATTCGGCCTT
Found at i:57087704 original size:24 final size:23
Alignment explanation
Indices: 57087672--57087801 Score: 179
Period size: 24 Copynumber: 5.4 Consensus size: 23
57087662 GCCAGCCAAC
*
57087672 TCCTGCTCCTTGATCAGCTCCTATA
1 TCCT-CTCCTT-ATCAGCTCCTAAA
*
57087697 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCC-TTATCAGCTCCTAAA
57087721 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
57087745 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
57087769 TCCTCTTCCTTATCAGCTCCTAAA
1 TCCTC-TCCTTATCAGCTCCTAAA
*
57087793 TCTTCTCCT
1 TCCTCTCCT
57087802 AACAGCCTTT
Statistics
Matches: 98, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
23 4 0.04
24 86 0.88
25 8 0.08
ACGTcount: A:0.18, C:0.38, G:0.05, T:0.38
Consensus pattern (23 bp):
TCCTCTCCTTATCAGCTCCTAAA
Found at i:57087758 original size:48 final size:48
Alignment explanation
Indices: 57087679--57087800 Score: 199
Period size: 48 Copynumber: 2.5 Consensus size: 48
57087669 AACTCCTGCT
* *
57087679 CCTTGATCAGCTCCTATATCTTCTCCTTTATCAGCTCCTAAATCCTCTC
1 CCTT-ATCAGCTCCTAAATCTTCTCCCTTATCAGCTCCTAAATCCTCTC
* *
57087728 CCTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAATCCTCTT
1 CCTTATCAGCTCCTAAATCTTCTCCCTTATCAGCTCCTAAATCCTCTC
57087776 CCTTATCAGCTCCTAAATCTTCTCC
1 CCTTATCAGCTCCTAAATCTTCTCC
57087801 TAACAGCCTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 64 0.94
49 4 0.06
ACGTcount: A:0.20, C:0.39, G:0.05, T:0.37
Consensus pattern (48 bp):
CCTTATCAGCTCCTAAATCTTCTCCCTTATCAGCTCCTAAATCCTCTC
Found at i:57094357 original size:26 final size:26
Alignment explanation
Indices: 57094328--57094380 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
57094318 TCCAACATGC
*
57094328 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTACCTCCTAAGGGT
* *
57094354 ATTTCGGTACTTTACCTCCTAAGGGT
1 ATTTAGGTAATTTACCTCCTAAGGGT
57094380 A
1 A
57094381 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATTTACCTCCTAAGGGT
Found at i:57095532 original size:29 final size:29
Alignment explanation
Indices: 57095474--57095532 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
57095464 GGCTATGGAG
*
57095474 GAAAAGAAGAAAAAGAAAAAAGTTGAAAT
1 GAAAAGAAGAAAAAGAAAAAAGTGGAAAT
* *
57095503 GAAAAGGAG-AAAAGAAATAAGTGGAGAAT
1 GAAAAGAAGAAAAAGAAAAAAGTGGA-AAT
57095532 G
1 G
57095533 GTCAGCAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.63, C:0.00, G:0.27, T:0.10
Consensus pattern (29 bp):
GAAAAGAAGAAAAAGAAAAAAGTGGAAAT
Found at i:57103073 original size:39 final size:39
Alignment explanation
Indices: 57103029--57103192 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 39
57103019 CCTTCGAGGT
*
57103029 TTAGCCGGATATAACT-ACTCG-ATCAAATGCCTTCGGGAC
1 TTAGCCGGATAT-AGTAACTCGCA-CAAATGCCTTCGGGAC
*
57103068 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
57103108 TTAGCCCAGATAT-GATAACTCGCACAATTGCCTTCGGG-C
1 TTAG-CCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * * *
57103147 TTAGCCCGAAATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
57103187 TTAGCC
1 TTAGCC
57103193 CGGTTATCAT
Statistics
Matches: 108, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
38 5 0.05
39 33 0.31
40 69 0.64
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:57103098 original size:40 final size:40
Alignment explanation
Indices: 57103052--57103195 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
57103042 ACTACTCGAT
*
57103052 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
57103092 CAAATGCCTTCGGGACTTAGCCCAGATAT-GATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCA
* * * *
57103132 CAATTGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
57103171 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
57103196 TTATCATCCG
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
38 3 0.03
39 30 0.33
40 58 0.63
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:57106981 original size:47 final size:47
Alignment explanation
Indices: 57106912--57107007 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
57106902 AAGTAGCTTC
57106912 GTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTA
1 GTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTA
57106959 GTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTA
1 GTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTA
57107006 GT
1 GT
57107008 AGCCGGCTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (47 bp):
GTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTA
Found at i:57111131 original size:39 final size:40
Alignment explanation
Indices: 57111088--57111254 Score: 182
Period size: 40 Copynumber: 4.2 Consensus size: 40
57111078 CCTTCGAGGT
* *
57111088 TTAG-CCGGATATAGCT-ACTTGCTCAAATACCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATACCTTCGGGAC
* *
57111127 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGAC
* *
57111167 TTAGCCCGGATAT-GATAACTCGCACAATTGCCTTCGGG-C
1 TTAGCCCGGATATAG-TAACTCGCACAAATACCTTCGGGAC
* * * *
57111206 TTAGCCCAGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGAC
57111246 TTAGCCCGG
1 TTAGCCCGG
57111255 TTATCATCCG
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 37 0.33
40 73 0.66
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGAC
Found at i:57111155 original size:40 final size:40
Alignment explanation
Indices: 57111111--57111258 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
57111101 GCTACTTGCT
*
57111111 CAAATACCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
57111151 CAAATGCCTTCGGGACTTAGCCCGGATAT-GATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCA
* * * * *
57111191 CAATTGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
57111230 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
57111259 CATCCGAATA
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.33
40 60 0.65
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:57119185 original size:40 final size:40
Alignment explanation
Indices: 57119107--57119327 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
57119097 AAACCAAGTA
** * **
57119107 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTTAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
57119146 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
57119186 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
57119226 CCTTCGGGACTTAGCCCGGATAT-GATAACTCACAC-AATCG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAAT-G
* * *
57119266 CCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
57119305 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
57119328 CATCCGAATA
Statistics
Matches: 161, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 44 0.27
40 115 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:57126077 original size:46 final size:46
Alignment explanation
Indices: 57126011--57126176 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 46
57126001 CTCGTAGCTG
57126011 ATGCATGT-CCAGACATGTCTTACACTGGCT-TACATATTGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATATTGAGGCCA
* * * * ** *
57126056 ATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGAGGCCA
* * * * **
57126102 TTGCCATGTCCCAGACATGGTCTTCCACTGGCTCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATTGAGGCCA
*
57126150 ATACATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
57126177 AGCACACAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 7
0.76 0.19 0.06
Matches are distributed among these distances:
45 8 0.09
46 39 0.41
47 28 0.30
48 19 0.20
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGAGGCCA
Found at i:57132534 original size:22 final size:22
Alignment explanation
Indices: 57132506--57132550 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
57132496 TCTTTTAAAC
57132506 TTTTCTTTATACATTTTGGCAT
1 TTTTCTTTATACATTTTGGCAT
57132528 TTTTCTTTATACATTTTGGCAT
1 TTTTCTTTATACATTTTGGCAT
57132550 T
1 T
57132551 CTCGTATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (22 bp):
TTTTCTTTATACATTTTGGCAT
Found at i:57138217 original size:22 final size:23
Alignment explanation
Indices: 57138184--57138227 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
57138174 CATAAAAAAA
* *
57138184 AAGAGAATACAAACGTCCAGCCC
1 AAGAGAATACAAAAGTCAAGCCC
57138207 AAGAG-ATACAAAAGTCAAGCC
1 AAGAGAATACAAAAGTCAAGCC
57138228 TAGAGAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.48, C:0.25, G:0.18, T:0.09
Consensus pattern (23 bp):
AAGAGAATACAAAAGTCAAGCCC
Found at i:57139954 original size:27 final size:27
Alignment explanation
Indices: 57139946--57140321 Score: 446
Period size: 27 Copynumber: 13.9 Consensus size: 27
57139936 AAAATTACTG
*
57139946 TTTTACCCTCAATTTACAGAATTACCG
1 TTTTACCCTCAATTTACAGAATTACCA
* * *
57139973 TTTTACCCTCAATTTATAAAATTACCG
1 TTTTACCCTCAATTTACAGAATTACCA
* ** *
57140000 TTTTACCCTCGATTTGTAAAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
57140027 TTTTACCCTCAATTTACAGAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
57140054 TTTTACCCTCAATTTACAGAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
*
57140081 TTTTACCCTCAATTTACAGAATTACAA
1 TTTTACCCTCAATTTACAGAATTACCA
* * *
57140108 TTTTACCCTCGATTTATAGAATTACAA
1 TTTTACCCTCAATTTACAGAATTACCA
**
57140135 TTTTACCCTTGATTTACAGAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
* ** *
57140162 TTTTACTCTTGATTTATAGAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
* *
57140189 TTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
* * * *
57140216 TTTTACCCTCGATTTATAGAACTATCA
1 TTTTACCCTCAATTTACAGAATTACCA
* ** *
57140243 TTTTACCTTTGATTTACAAAATTACCA
1 TTTTACCCTCAATTTACAGAATTACCA
* * * *
57140270 TTTTACCCTCGATTTACAAAATTATCG
1 TTTTACCCTCAATTTACAGAATTACCA
* *
57140297 TTTTACCCTCGATTTACAAAATTAC
1 TTTTACCCTCAATTTACAGAATTAC
57140322 TAAAATACCC
Statistics
Matches: 317, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 317 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (27 bp):
TTTTACCCTCAATTTACAGAATTACCA
Found at i:57140330 original size:27 final size:27
Alignment explanation
Indices: 57139949--57140500 Score: 184
Period size: 27 Copynumber: 20.4 Consensus size: 27
57139939 ATTACTGTTT
* * ****
57139949 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ****
57139976 TACCCTCAATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
** ***
57140003 TACCCTCGATTTGTAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
57140030 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
57140057 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * **
57140084 TACCCTCAATTTACAGAATTA-CAATTT
1 TACCCTCGATTTACAAAATTACCAA-AA
* * **
57140111 TACCCTCGATTTATAGAATTA-CAATTT
1 TACCCTCGATTTACAAAATTACCAA-AA
* * ***
57140138 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * * ***
57140165 TACTCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
57140192 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * * ***
57140219 TACCCTCGATTTATAGAACTATCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
57140246 TACCTTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ****
57140273 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
57140300 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
57140327 TACCCT-TATTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *
57140354 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* ** *
57140381 TACCCATTG-TTTGTAAAATTACTAAAA
1 TACCC-TCGATTTACAAAATTACCAAAA
* **
57140408 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *
57140435 TACCCCTGGCTTGT--AAAATTACCAAAA
1 TA-CCCTCGATT-TACAAAATTACCAAAA
* *** *
57140462 TACCCTTGATTTGTGAAATTATCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
57140489 TACTCTCGATTT
1 TACCCTCGATTT
57140501 GTAAAATATC
Statistics
Matches: 453, Mismatches: 58, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.00
26 12 0.03
27 428 0.94
28 11 0.02
29 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:57140340 original size:54 final size:54
Alignment explanation
Indices: 57139949--57140385 Score: 279
Period size: 54 Copynumber: 8.1 Consensus size: 54
57139939 ATTACTGTTT
* * * * * * ****
57139949 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAAAA
** * * * ***
57140003 TACCCTCGATTTGTAAAATTACCATTTTACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAAAA
* * * * * **
57140057 TACCCTCAATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTA-CAATTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAA-AA
* * * * ***
57140111 TACCCTCGATTTATAGAATTA-CAATTTTACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTATC-ATTTTACCCTCGATTTACAAAATTACCAAAA
* * * * * * * ***
57140165 TACTCTTGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAAAA
* * * * * ***
57140219 TACCCTCGATTTATAGAACTATCATTTTACCTTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAAAA
* *
57140273 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAAAA
* * *** * *
57140327 TACCCT-TATTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTATCATTTTACCCTCGATTTA-CAAAATTACCAAAA
57140381 TACCC
1 TACCC
57140386 ATTGTTTGTA
Statistics
Matches: 328, Mismatches: 49, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
53 6 0.02
54 319 0.97
55 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCAAAA
Found at i:57140399 original size:54 final size:53
Alignment explanation
Indices: 57140300--57140507 Score: 213
Period size: 54 Copynumber: 3.8 Consensus size: 53
57140290 ATTATCGTTT
** * *
57140300 TACCCTCGATTTACAAAATTACTAAAATACCCTTATTT-TACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGTTTGT--AAAATTACCAAAA
** *
57140354 TACCCTCGATCAGTAAAATTACCAAAATACCCATTGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCC-TTGTTTGTAAAATTACCAAAA
* * *
57140408 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATA-CCCTTGTTTGTAAAATTACCAAAA
* * * * *
57140462 TACCCTTGATTTGTGAAATTATCAAAATACTCTCGATTTGTAAAAT
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTG-TTTGTAAAAT
57140508 ATCGAAATAC
Statistics
Matches: 128, Mismatches: 20, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
53 6 0.05
54 112 0.88
55 9 0.07
56 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (53 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTTGTTTGTAAAATTACCAAAA
Found at i:57140475 original size:81 final size:82
Alignment explanation
Indices: 57140300--57140522 Score: 242
Period size: 81 Copynumber: 2.8 Consensus size: 82
57140290 ATTATCGTTT
* ** * * ** *
57140300 TACCCTCGATTTACAAAATTACTAAAATACCCTTATTTTACAAAATTACCAAAATA-CCCTCGAT
1 TACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGAT
57140364 CAGTAAAATTACCAAAA
66 CAGTAAAATTACCAAAA
*
57140381 TACCCATTG-TTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGC
1 TACCC-TTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGA
*
57140445 T-TGTAAAATTACCAAAA
65 TCAGTAAAATTACCAAAA
* * * * *
57140462 TACCCTTGATTTGTGAAATTA-TCAAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCTG
1 TACCCTTGATTTGTAAAATTACT-AAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTG
57140523 TAGGGTAGAA
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
80 22 0.18
81 92 0.75
82 8 0.07
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (82 bp):
TACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGAT
CAGTAAAATTACCAAAA
Found at i:57140501 original size:27 final size:26
Alignment explanation
Indices: 57140342--57140519 Score: 121
Period size: 27 Copynumber: 6.7 Consensus size: 26
57140332 TTATTTTACA
* **
57140342 AAATTACCAAAATACCCTCGATCAGT
1 AAATTATCAAAATACCCTCGATTTGT
* *
57140368 AAAATTACCAAAATACCCATTG-TTTGT
1 -AAATTATCAAAATACCC-TCGATTTGT
*
57140395 AAAATTA-CTAAAATACCC-CTAGTTTGT
1 -AAATTATC-AAAATACCCTCGA-TTTGT
* **
57140422 AAAATTACCAAAATACCC-CTGGCTTGT
1 -AAATTATCAAAATACCCTC-GATTTGT
* *
57140449 AAAATTACCAAAATACCCTTGATTTGT
1 -AAATTATCAAAATACCCTCGATTTGT
*
57140476 GAAATTATCAAAATACTCTCGATTTGT
1 -AAATTATCAAAATACCCTCGATTTGT
* *
57140503 AAAATATCGAAATACCC
1 AAATTATCAAAATACCC
57140520 CTGTAGGGTA
Statistics
Matches: 126, Mismatches: 18, Indels: 15
0.79 0.11 0.09
Matches are distributed among these distances:
26 15 0.12
27 108 0.86
28 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAATTATCAAAATACCCTCGATTTGT
Done.