Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 167 of 311
Found at i:57140542 original size:27 final size:27
Alignment explanation
Indices: 57140510--57140727 Score: 301
Period size: 27 Copynumber: 8.0 Consensus size: 27
57140500 TGTAAAATAT
57140510 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
57140537 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
57140564 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
57140591 CGAAATACCCATGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
57140618 TGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
57140645 TGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
57140672 CGAAATACCCTTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
57140699 TGAGATACCCTTGTGGGGTAAAAATTAC
1 CGAAATACCCCTGTAGGGT-AGAATTAC
57140727 C
1 C
57140728 ATTTTGCCCC
Statistics
Matches: 172, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 165 0.96
28 7 0.04
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:57140974 original size:25 final size:25
Alignment explanation
Indices: 57140930--57141024 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
57140920 AGGAAGTGCT
*
57140930 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
57140955 AAAAGGGCTTTGTCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
57140980 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
57141005 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
57141025 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:57141037 original size:24 final size:25
Alignment explanation
Indices: 57140930--57141037 Score: 100
Period size: 25 Copynumber: 4.4 Consensus size: 25
57140920 AGGAAGTGCT
* *
57140930 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
* * *
57140954 GAAAAG-GGCTTTGTCCTAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
57140979 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
57141004 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
57141028 AAAAGAGGCT
1 AAAAGAGGCT
57141038 AGGCCACCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.22
25 57 0.78
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:57146328 original size:18 final size:18
Alignment explanation
Indices: 57146307--57146341 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57146297 AAGAAACATT
57146307 ATCAGAACTAGAATCAGA
1 ATCAGAACTAGAATCAGA
* *
57146325 ATCAGAATTTGAATCAG
1 ATCAGAACTAGAATCAG
57146342 GTGACAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (18 bp):
ATCAGAACTAGAATCAGA
Found at i:57146355 original size:31 final size:31
Alignment explanation
Indices: 57146316--57146400 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
57146306 TATCAGAACT
* *
57146316 AGAATCAGAATCAGAATTTGAATCAGGTGAC
1 AGAATCAGAATCAGAATCTGAATCAGGTAAC
* *
57146347 A-AATTCAGAATCAGAATCAGTATCAGGTAAC
1 AGAA-TCAGAATCAGAATCTGAATCAGGTAAC
* *
57146378 AGAATCAAAATCAGAATGTGAAT
1 AGAATCAGAATCAGAATCTGAAT
57146401 GCAATCCCAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 2 0.05
31 40 0.91
32 2 0.05
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCTGAATCAGGTAAC
Found at i:57146561 original size:27 final size:26
Alignment explanation
Indices: 57146513--57146572 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57146503 GCGAGGCTGC
*
57146513 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57146540 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57146566 CAGATAT
1 CAGATAT
57146573 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57146585 original size:33 final size:32
Alignment explanation
Indices: 57146534--57146597 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
57146524 ACGAAGTCAC
* *
57146534 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
57146566 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
57146598 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:57146661 original size:27 final size:26
Alignment explanation
Indices: 57146613--57146663 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
57146603 GTGAGGCTGC
*
57146613 CAGATATTGTGACGAAGTCACCAGGA
1 CAGATATTGTGACGAAGCCACCAGGA
* *
57146639 CAGATATATGTGGCGAGGCCACCAG
1 CAGATAT-TGTGACGAAGCCACCAG
57146664 ATTGCAGCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGGA
Found at i:57146969 original size:27 final size:27
Alignment explanation
Indices: 57146927--57147095 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
57146917 TACACCACAA
* * *
57146927 GGTATCTCGGTAATTCTACCCTGCAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57146954 GGTATTTCAGT-TATTCTACCCTACAGG
1 GGTATTTCGGTAT-TTCTACCCTACAGG
* *
57146981 GGTTTTTTGGTATTTCTACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57147008 GGTATTTCGGTATTTCGACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
* *
57147035 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57147062 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
57147089 GGTATTT
1 GGTATTT
57147096 TAGTAATTTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
27 123 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTATTTCTACCCTACAGG
Found at i:57147172 original size:27 final size:27
Alignment explanation
Indices: 57147135--57147313 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
57147125 GTAATTCTGT
* *
57147135 AAATCAGGGGTACTTTGATAATTTTAC
1 AAATCAAGGGTATTTTGATAATTTTAC
* **
57147162 AAGTCAAGGGTATTTCAATAATTTTAC
1 AAATCAAGGGTATTTTGATAATTTTAC
** * * *
57147189 AGGTCGAGGGTA-TTTCAGTAATTTCAC
1 AAATCAAGGGTATTTTGA-TAATTTTAC
* *
57147216 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAAGGGTATTTTGATAATTTTAC
*
57147243 AAA-CTATGGGTATTTTGATAATTTTAC
1 AAATC-AAGGGTATTTTGATAATTTTAC
* * * **
57147270 AAACCAGGGGTATTTTGGTAATTTTGT
1 AAATCAAGGGTATTTTGATAATTTTAC
*
57147297 AAACCAAGGGTATTTTG
1 AAATCAAGGGTATTTTG
57147314 GTAAACTAAA
Statistics
Matches: 124, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
26 4 0.03
27 116 0.94
28 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
AAATCAAGGGTATTTTGATAATTTTAC
Found at i:57147198 original size:81 final size:81
Alignment explanation
Indices: 57147113--57147270 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 81
57147103 TTTGTAAATT
* ** *
57147113 GAGGGTAAAACGGTAA-TTCTGTAAATCAGGGGTACTTTGATAATTTTAC-AAGTCAAGGGTATT
1 GAGGGTAAAACAGTAATTTC-ACAAATCAGGGGTACTTTGATAATTTTACAAACT-AAGGGTATT
57147176 TCAATAATTTTACAGGTC
64 TCAATAATTTTACAGGTC
*** * * * *
57147194 GAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTT
1 GAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGATAATTTTACAAACTAAGGGTATTTC
*
57147259 GATAATTTTACA
66 AATAATTTTACA
57147271 AACCAGGGGT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
81 57 0.90
82 6 0.10
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (81 bp):
GAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGATAATTTTACAAACTAAGGGTATTTC
AATAATTTTACAGGTC
Found at i:57147281 original size:81 final size:81
Alignment explanation
Indices: 57147135--57147317 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 81
57147125 GTAATTCTGT
* * * ***
57147135 AAATCAGGGGTACTTTGATAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAGGTCGAGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAACCGAGGGT
57147200 ATTTCAGTAATTTCAC
66 ATTTCAGTAATTTCAC
* **
57147216 AAATCAGGGGTATTTTGGTAATTTTACAAACT-ATGGGTATTTTGATAATTTTACAAACC-AGGG
1 AAATCAGGGGTATTTTGGTAATTTTAC-AACTCAAGGGTATTTCAATAATTTTACAAACCGA-GG
** ***
57147279 GTATTTTGGTAATTTTGT
64 GTATTTCAGTAATTTCAC
* *
57147297 AAACCAAGGGTATTTTGGTAA
1 AAATCAGGGGTATTTTGGTAA
57147318 ACTAAAGTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 80 0.95
82 3 0.04
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
AAATCAGGGGTATTTTGGTAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAACCGAGGGT
ATTTCAGTAATTTCAC
Found at i:57149284 original size:18 final size:18
Alignment explanation
Indices: 57149263--57149297 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57149253 AAGAAACATT
57149263 ATCAGAACTAGAATCAGA
1 ATCAGAACTAGAATCAGA
* *
57149281 ATCAGAATTTGAATCAG
1 ATCAGAACTAGAATCAG
57149298 GTGACAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (18 bp):
ATCAGAACTAGAATCAGA
Found at i:57149311 original size:31 final size:31
Alignment explanation
Indices: 57149272--57149356 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
57149262 TATCAGAACT
* *
57149272 AGAATCAGAATCAGAATTTGAATCAGGTGAC
1 AGAATCAGAATCAGAATCTGAATCAGGTAAC
* *
57149303 A-AATTCAGAATCAGAATCAGTATCAGGTAAC
1 AGAA-TCAGAATCAGAATCTGAATCAGGTAAC
* *
57149334 AGAATCAAAATCAGAATGTGAAT
1 AGAATCAGAATCAGAATCTGAAT
57149357 GCAATCCCAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 2 0.05
31 40 0.91
32 2 0.05
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCTGAATCAGGTAAC
Found at i:57149517 original size:27 final size:26
Alignment explanation
Indices: 57149469--57149528 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57149459 GCGAGGCTGC
*
57149469 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57149496 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57149522 CAGATAT
1 CAGATAT
57149529 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57149541 original size:33 final size:32
Alignment explanation
Indices: 57149490--57149553 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
57149480 ACGAAGTCAC
* *
57149490 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
57149522 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
57149554 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:57149617 original size:27 final size:26
Alignment explanation
Indices: 57149569--57149620 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
57149559 GTGAGGCTGC
*
57149569 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
57149595 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
57149621 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57149925 original size:27 final size:27
Alignment explanation
Indices: 57149883--57150051 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
57149873 TACCCCACAA
* * *
57149883 GGTATCTCGGTAATTCTACCCTGCAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57149910 GGTATTTCAGT-TATTCTACCCTACAGG
1 GGTATTTCGGTAT-TTCTACCCTACAGG
*
57149937 GGTTTTTCGGTATTTCTACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57149964 GGTATTTCGGTATTTCGACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
* *
57149991 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57150018 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
57150045 GGTATTT
1 GGTATTT
57150052 TAGTAATTTT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
27 125 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTATTTCTACCCTACAGG
Found at i:57150128 original size:27 final size:27
Alignment explanation
Indices: 57150096--57150250 Score: 104
Period size: 27 Copynumber: 5.7 Consensus size: 27
57150086 TCTGTAAATC
57150096 AGGGGTACTTTGATAATTTTACAAGTCG
1 AGGGGTA-TTTGATAATTTTACAAGTCG
* *
57150124 A-GGGTATTTCAATAATTTTACAGGTCG
1 AGGGGTATTT-GATAATTTTACAAGTCG
* * *
57150151 A-GGGTATTTCAGTAATTTCACAAATC-
1 AGGGGTATTTGA-TAATTTTACAAGTCG
* * *
57150177 AGGGGTATTTTGGTAATTTTACAA-ACT
1 AGGGGTA-TTTGATAATTTTACAAGTCG
* * * *
57150204 ATGGGTATTTTGATAATTTTATAA-ACC
1 AGGGGTA-TTTGATAATTTTACAAGTCG
*
57150231 AGGGGTATTTTGGTAATTTT
1 AGGGGTA-TTTGATAATTTT
57150251 GTAAACCAAG
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.06
27 96 0.91
28 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTGATAATTTTACAAGTCG
Found at i:57150237 original size:81 final size:81
Alignment explanation
Indices: 57150091--57150273 Score: 181
Period size: 81 Copynumber: 2.3 Consensus size: 81
57150081 GTAATTCTGT
* * * ***
57150091 AAATCAGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAGACGAGGGTATTTCAATAATTTTACAAACCGAGGGT
57150156 ATTTCAGTAATTTCAC
66 ATTTCAGTAATTTCAC
* ** *
57150172 AAATCAGGGGTATTTTGGTAATTTTACAA-ACTATGGGTATTTTGATAATTTTATAAACC-AGGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAGACGA-GGGTATTTCAATAATTTTACAAACCGA-GG
** ***
57150235 GTATTTTGGTAATTTTGT
64 GTATTTCAGTAATTTCAC
* *
57150253 AAACCAAGGGTATTTTGGTAA
1 AAATCAGGGGTATTTTGGTAA
57150274 ACTAAAGTAT
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 3 0.04
81 80 0.96
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAGACGAGGGTATTTCAATAATTTTACAAACCGAGGGT
ATTTCAGTAATTTCAC
Found at i:57150255 original size:27 final size:27
Alignment explanation
Indices: 57150152--57150273 Score: 145
Period size: 27 Copynumber: 4.5 Consensus size: 27
57150142 TACAGGTCGA
** * * *
57150152 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
57150179 GGGTATTTTGGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTTATAAACCAG
*
57150206 GGGTATTTTGATAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
57150233 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
57150260 GGGTATTTTGGTAA
1 GGGTATTTTGGTAA
57150274 ACTAAAGTAT
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:57152234 original size:18 final size:18
Alignment explanation
Indices: 57152213--57152247 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57152203 AAGAAACATT
57152213 ATCAGAACTAGAATCAGA
1 ATCAGAACTAGAATCAGA
* *
57152231 ATCAGAATTTGAATCAG
1 ATCAGAACTAGAATCAG
57152248 GTGACAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (18 bp):
ATCAGAACTAGAATCAGA
Found at i:57152261 original size:31 final size:31
Alignment explanation
Indices: 57152222--57152306 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
57152212 TATCAGAACT
* *
57152222 AGAATCAGAATCAGAATTTGAATCAGGTGAC
1 AGAATCAGAATCAGAATCTGAATCAGGTAAC
* *
57152253 A-AATTCAGAATCAGAATCAGTATCAGGTAAC
1 AGAA-TCAGAATCAGAATCTGAATCAGGTAAC
* *
57152284 AGAATCAAAATCAGAATGTGAAT
1 AGAATCAGAATCAGAATCTGAAT
57152307 GCAATCCCAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 2 0.05
31 40 0.91
32 2 0.05
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCTGAATCAGGTAAC
Found at i:57152467 original size:27 final size:26
Alignment explanation
Indices: 57152419--57152478 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57152409 GCGAGGCTGC
*
57152419 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57152446 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57152472 CAGATAT
1 CAGATAT
57152479 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57152491 original size:33 final size:32
Alignment explanation
Indices: 57152440--57152503 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
57152430 ACGAAGTCAC
* *
57152440 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
57152472 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
57152504 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:57152567 original size:27 final size:26
Alignment explanation
Indices: 57152519--57152570 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
57152509 GTGAGGCTGC
*
57152519 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
57152545 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
57152571 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57152875 original size:27 final size:27
Alignment explanation
Indices: 57152833--57153001 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
57152823 TACCCCACAA
* * *
57152833 GGTATCTCGGTAATTCTACCCTGCAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57152860 GGTATTTCAGT-TATTCTACCCTACAGG
1 GGTATTTCGGTAT-TTCTACCCTACAGG
*
57152887 GGTTTTTCGGTATTTCTACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57152914 GGTATTTCGGTATTTCGACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
* *
57152941 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTATTTCTACCCTACAGG
*
57152968 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTATTTCTACCCTACAGG
57152995 GGTATTT
1 GGTATTT
57153002 TGTAATTTTG
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
27 125 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTATTTCTACCCTACAGG
Found at i:57153076 original size:27 final size:26
Alignment explanation
Indices: 57153045--57153172 Score: 107
Period size: 27 Copynumber: 4.7 Consensus size: 26
57153035 TCTGTAAATC
57153045 AGGGTACTTTGATAATTTTACAAGTCG
1 AGGGTA-TTTGATAATTTTACAAGTCG
* *
57153072 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTT-GATAATTTTACAAGTCG
* * *
57153099 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTGA-TAATTTTACAAGTCG
* * *
57153125 AGGGGTATTTTGGTAATTTTACAA-ACT
1 A-GGGTA-TTTGATAATTTTACAAGTCG
57153152 ATGGGTATTTTGATAATTTTA
1 A-GGGTA-TTTGATAATTTTA
57153173 TAAACCAGGG
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
26 6 0.07
27 75 0.89
28 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
AGGGTATTTGATAATTTTACAAGTCG
Found at i:57153177 original size:27 final size:27
Alignment explanation
Indices: 57153099--57153221 Score: 138
Period size: 27 Copynumber: 4.6 Consensus size: 27
57153089 TTACAGGTCG
** * * *
57153099 AGGGTATTTCAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
57153126 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
57153153 TGGGTATTTTGATAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
57153180 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
57153207 AGGGTATTTTGGTAA
1 AGGGTATTTTGGTAA
57153222 ACTAAAGTAT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACCA
Found at i:57155186 original size:18 final size:18
Alignment explanation
Indices: 57155165--57155199 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57155155 AAGAAACATT
57155165 ATCAGAACTAGAATCAGA
1 ATCAGAACTAGAATCAGA
* *
57155183 ATCAGAATTTGAATCAG
1 ATCAGAACTAGAATCAG
57155200 GTGACAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (18 bp):
ATCAGAACTAGAATCAGA
Found at i:57155213 original size:31 final size:31
Alignment explanation
Indices: 57155174--57155258 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
57155164 TATCAGAACT
* *
57155174 AGAATCAGAATCAGAATTTGAATCAGGTGAC
1 AGAATCAGAATCAGAATCTGAATCAGGTAAC
* *
57155205 A-AATTCAGAATCAGAATCAGTATCAGGTAAC
1 AGAA-TCAGAATCAGAATCTGAATCAGGTAAC
* *
57155236 AGAATCAAAATCAGAATGTGAAT
1 AGAATCAGAATCAGAATCTGAAT
57155259 GCAATCCCAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 2 0.05
31 40 0.91
32 2 0.05
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCTGAATCAGGTAAC
Found at i:57155419 original size:27 final size:26
Alignment explanation
Indices: 57155371--57155430 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57155361 GCGAGGCTGC
*
57155371 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57155398 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57155424 CAGATAT
1 CAGATAT
57155431 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57155475 original size:71 final size:67
Alignment explanation
Indices: 57155398--57155539 Score: 176
Period size: 67 Copynumber: 2.1 Consensus size: 67
57155388 TCACCAGATA
* * * * *
57155398 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGTCACTAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
*
57155463 GGCTGC
62 GGCTAC
* *
57155469 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
57155534 AC
66 AC
57155536 CAGA
1 CAGA
57155540 ACGCTTTCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 38 0.60
71 25 0.40
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
AC
Found at i:57155517 original size:27 final size:26
Alignment explanation
Indices: 57155469--57155520 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
57155459 GCGAGGCTGC
*
57155469 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
57155495 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
57155521 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57155959 original size:27 final size:27
Alignment explanation
Indices: 57155765--57155951 Score: 241
Period size: 27 Copynumber: 7.0 Consensus size: 27
57155755 GGGGTAAAAT
* * *
57155765 GGTAATTTTACCCCACAA-GGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57155791 GGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
57155818 AGTTATTCTACCCTACAGGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
57155845 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57155872 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57155899 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57155926 GGTAATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
57155952 TAGTAATTTT
Statistics
Matches: 141, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 14 0.10
27 127 0.90
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:57156028 original size:27 final size:26
Alignment explanation
Indices: 57155998--57156073 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
57155988 TATAAATCAG
*
57155998 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTA-TTTAATAATTTTACAAGTCGA
*
57156025 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTT-AATAATTTTACAAGTCGA
* *
57156052 GGGTATTTCAGTAATTTCACAA
1 GGGTATTT-AATAATTTTACAA
57156074 ATCGCATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (26 bp):
GGGTATTTAATAATTTTACAAGTCGA
Found at i:57156117 original size:27 final size:27
Alignment explanation
Indices: 57156079--57156168 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
57156069 CACAAATCGC
*
57156079 ATTTTGGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTACAAACCAGGGGT
*
57156106 ATTTTGATAATTTTACAAACCAGGGGT
1 ATTTTGGTAATTTTACAAACCAGGGGT
** *
57156133 ATTTTGGTAATTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTACAAACCAGGGGT
57156160 ATTTTGGTA
1 ATTTTGGTA
57156169 GACTAAAGTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
ATTTTGGTAATTTTACAAACCAGGGGT
Found at i:57157182 original size:13 final size:13
Alignment explanation
Indices: 57157164--57157188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57157154 CCTACACCAT
57157164 AAGTCAAAGCATC
1 AAGTCAAAGCATC
57157177 AAGTCAAAGCAT
1 AAGTCAAAGCAT
57157189 AATAGACATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (13 bp):
AAGTCAAAGCATC
Found at i:57166841 original size:91 final size:91
Alignment explanation
Indices: 57166683--57166852 Score: 304
Period size: 91 Copynumber: 1.9 Consensus size: 91
57166673 TAATCTGAAT
* *
57166683 GCCTAAATGTGGACGTAAGATCATTAAGGCCGGCCATGAGCGATCTCCTGGCCTAAGGCCGAGTT
1 GCCTAAACGTGGACGTAAGATCATTAAGGCCGGCCATGAGCGATCTCCTGGCCTAAGGCCGAATT
*
57166748 GGGCCTTGGTGGGCTGAAACGGGAAC
66 GGGCCATGGTGGGCTGAAACGGGAAC
*
57166774 GCCTAAACGTGGGCGTAAGATCATTAAGGCCGGCCATGAGCGATCTCCTGGCCTAAGGCCGAATT
1 GCCTAAACGTGGACGTAAGATCATTAAGGCCGGCCATGAGCGATCTCCTGGCCTAAGGCCGAATT
57166839 GGGCCATGGTGGGC
66 GGGCCATGGTGGGC
57166853 CAAAACGAGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.22, C:0.24, G:0.34, T:0.19
Consensus pattern (91 bp):
GCCTAAACGTGGACGTAAGATCATTAAGGCCGGCCATGAGCGATCTCCTGGCCTAAGGCCGAATT
GGGCCATGGTGGGCTGAAACGGGAAC
Found at i:57167512 original size:34 final size:34
Alignment explanation
Indices: 57167448--57167512 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
57167438 TTATCGACAC
*
57167448 TGTAATGGGCTAAGGTCCACAATGATACTGATAT
1 TGTAATGGGCTAAGGTCCACAATGAAACTGATAT
57167482 TGTAATGGGCTAAGG-CC-CTAACTGAAACTGA
1 TGTAATGGGCTAAGGTCCAC-AA-TGAAACTGA
57167513 ACTGTTACTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 1 0.04
33 4 0.14
34 23 0.82
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (34 bp):
TGTAATGGGCTAAGGTCCACAATGAAACTGATAT
Found at i:57174565 original size:17 final size:17
Alignment explanation
Indices: 57174540--57174602 Score: 81
Period size: 17 Copynumber: 3.7 Consensus size: 17
57174530 AAATGGGCCG
* **
57174540 TGTGGGCCCCACGATTA
1 TGTGAGCCCCACGGGTA
*
57174557 TGTGAGCCCCATGGGTA
1 TGTGAGCCCCACGGGTA
57174574 TGTGAGCCCCACGGGTA
1 TGTGAGCCCCACGGGTA
*
57174591 TGTGGGCCCCAC
1 TGTGAGCCCCAC
57174603 ACAGGTAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (17 bp):
TGTGAGCCCCACGGGTA
Found at i:57209955 original size:55 final size:55
Alignment explanation
Indices: 57209894--57210003 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
57209884 TAGTTAATAT
*
57209894 GTTTGATTTTGAGGTTGTGTATATATTAAGCCATGCAAAAATGGCTAAGTATAAA
1 GTTTGATTTTGAGGTTGTGTATATATTAAACCATGCAAAAATGGCTAAGTATAAA
*
57209949 GTTTGATTTTGAGGTTGTGTATATATTAAACCATGCTAAAATGGCTAAGTATAAA
1 GTTTGATTTTGAGGTTGTGTATATATTAAACCATGCAAAAATGGCTAAGTATAAA
57210004 TTTTAAGTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (55 bp):
GTTTGATTTTGAGGTTGTGTATATATTAAACCATGCAAAAATGGCTAAGTATAAA
Found at i:57214325 original size:31 final size:31
Alignment explanation
Indices: 57214244--57214327 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
57214234 TCAGTCTCAA
* *
57214244 CATAT-ACTGGGTCGAAGCCCTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
* *
57214274 CATATCACTGGGCCAAAGCCTTTTCATTTTT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
57214305 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
57214328 ACTGTAAACG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:57214580 original size:25 final size:25
Alignment explanation
Indices: 57214548--57214617 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
57214538 CTCTTTTAAT
* *
57214548 AACTGGGGCAAAGCCCTTTTTGATG
1 AACTGGGGCAAAGCCCTTTTCGATA
*
57214573 AATTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
57214598 AACTAGGGAAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
57214618 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:57214676 original size:10 final size:10
Alignment explanation
Indices: 57214663--57214700 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
57214653 CATATATGAA
57214663 CATATCATGG
1 CATATCATGG
*
57214673 CATATCAGGTG
1 CATATCATG-G
57214684 CATATCATGG
1 CATATCATGG
57214694 CATATCA
1 CATATCA
57214701 CGTACAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (10 bp):
CATATCATGG
Found at i:57214781 original size:25 final size:25
Alignment explanation
Indices: 57214742--57214791 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
57214732 ATAACATATC
* *
57214742 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
57214767 CCTAGGGGCAAAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
57214792 AATTATAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTCA
Found at i:57221510 original size:30 final size:30
Alignment explanation
Indices: 57221476--57221535 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
57221466 ATTTAATACG
57221476 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
57221506 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
57221536 GGTTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:57223910 original size:40 final size:40
Alignment explanation
Indices: 57223826--57224009 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
57223816 TCGAATGATG
* *
57223826 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
57223865 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
57223906 TCC-GGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
57223944 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
57223983 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
57224010 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 27 0.22
39 13 0.10
40 74 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:57223961 original size:78 final size:81
Alignment explanation
Indices: 57223827--57224007 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 81
57223817 CGAATGATGT
* *
57223827 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
57223891 GTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * **
57223907 CC-GGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
57223968 TGTGTGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
57223985 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
57224008 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 53 0.61
79 19 0.22
80 14 0.16
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:57231997 original size:38 final size:39
Alignment explanation
Indices: 57231879--57232099 Score: 243
Period size: 40 Copynumber: 5.6 Consensus size: 39
57231869 TCGAATGATG
* * * *
57231879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTA-A
* * *
57231919 TCCGGACTAAGAT-CCGAAGGCATTTGTGAAGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTGGTG-CGAGTTACTAA
*
57231959 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
*
57231997 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-AA
* *
57232036 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-A
* *
57232076 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57232100 TGAACGAGTA
Statistics
Matches: 159, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 46 0.29
39 26 0.16
40 74 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
Found at i:57234482 original size:27 final size:27
Alignment explanation
Indices: 57234452--57234579 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
57234442 TACTGAAATG
*
57234452 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
57234479 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
57234506 ACCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
57234533 CCCTCAATTTATAGAATTAGCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
57234560 CCCTCGATTTATAGAATTAC
1 CCCTCGATTTATAGAATTAC
57234580 TGAAATACCC
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:57234601 original size:27 final size:27
Alignment explanation
Indices: 57234571--57234939 Score: 560
Period size: 27 Copynumber: 13.7 Consensus size: 27
57234561 CCTCGATTTA
* *
57234571 TAGAATTACTGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
57234598 TAGATTTACCGAAATACCACTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
57234625 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
57234652 TAGAATTATCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
57234679 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
57234706 TAGAATTATC-ACAATACCCCTATAGGG
1 TAGAATTACCGA-AATACCCCTGTAGGG
*
57234733 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
57234760 TAGAATTACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
57234787 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
57234814 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
57234841 TAGAATTACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
**
57234868 TAGAATTACTAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
** *
57234895 TAGAATTACTAAAATACCCCTGCAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
57234922 TAGAATTACCGAGATACC
1 TAGAATTACCGAAATACC
57234940 TTGTGGGATA
Statistics
Matches: 314, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
26 1 0.00
27 312 0.99
28 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:57235428 original size:22 final size:22
Alignment explanation
Indices: 57235376--57235440 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
57235366 TTAAAGCCTT
* *
57235376 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
57235398 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
57235420 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
57235441 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:57235629 original size:27 final size:27
Alignment explanation
Indices: 57235599--57235697 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
57235589 ATTCTGTTAA
* *
57235599 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
57235626 GTGGCTATGCCACAAATATATG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
57235653 GTGGCTCTGGCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
57235680 GTGACTCTGTCACAATAT
1 GTGGCTATGCCACAATAT
57235698 TTGATAACTG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 48 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:57235881 original size:25 final size:25
Alignment explanation
Indices: 57235843--57235899 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
57235833 TTCTGATTTT
* *
57235843 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
* *
57235868 TGATTTTGTCACCTAATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
57235893 TAATTCT
1 TGATTCT
57235900 AATTCTAGTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.47
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:57235897 original size:12 final size:12
Alignment explanation
Indices: 57235880--57235914 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
57235870 ATTTTGTCAC
57235880 CTAATTCTGATT
1 CTAATTCTGATT
*
57235892 CTAATTCTAATT
1 CTAATTCTGATT
*
57235904 CTAGTTCTGAT
1 CTAATTCTGAT
57235915 AATGTTTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.49
Consensus pattern (12 bp):
CTAATTCTGATT
Found at i:57237337 original size:46 final size:48
Alignment explanation
Indices: 57237252--57237353 Score: 136
Period size: 46 Copynumber: 2.2 Consensus size: 48
57237242 CATGAATTTT
* *
57237252 TCCTGTCTCCAATGCCATATATATATAATATGGGCTTACATGGCTCAC
1 TCCTGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTCAC
* * *
57237300 TCCTGTCTCCAAAGCCATATA-A-CTGATATGGACTTACATGGCTCAT
1 TCCTGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTCAC
*
57237346 TTCTGTCT
1 TCCTGTCT
57237354 TGTCCTGTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
46 27 0.56
47 1 0.02
48 20 0.42
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (48 bp):
TCCTGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTCAC
Found at i:57239216 original size:27 final size:27
Alignment explanation
Indices: 57239133--57239222 Score: 87
Period size: 27 Copynumber: 3.3 Consensus size: 27
57239123 TTGTAATTCG
** *
57239133 AGGGTACTTT-GATAATTTTACATGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCA
*
57239160 AGGGTATTTC-AGTAATTTTGCAAA-CTA
1 AGGGTATTTCGA-TAATTTTACAAATC-A
57239187 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCA
*
57239214 AGGATATTT
1 AGGGTATTT
57239223 GTGGGAGACT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
26 5 0.10
27 45 0.87
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCA
Found at i:57239480 original size:27 final size:26
Alignment explanation
Indices: 57239432--57239483 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
57239422 GCGAGGCTGC
*
57239432 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
57239458 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
57239484 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57239749 original size:27 final size:27
Alignment explanation
Indices: 57239719--57239887 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
57239709 TAACACCCTA
** *
57239719 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
** * *
57239746 AGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
57239773 AGAGTAAAACAATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
57239800 AGGGTAAAACAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
57239827 AGGGTAAAACAATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
57239854 AGGGTAAAACAGTAATTTTTGTAATTCG
1 AGGGTAAAACAGTAA-TTTTGTAAATCG
57239882 AGGGTA
1 AGGGTA
57239888 CTTTGATAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
27 106 0.86
28 17 0.14
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCG
Found at i:57239939 original size:27 final size:27
Alignment explanation
Indices: 57239909--57240033 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
57239899 TTACATGTCG
*
57239909 AGGGTATTTCAGTAATTTTGCAAACTA
1 AGGGTATTTCAGTAATTTTACAAACTA
*
57239936 AGGGTATTTC-GATAATTTTTCAAA-TCA
1 AGGGTATTTCAG-TAATTTTACAAACT-A
* * *
57239963 AGGATATTTCGGTAATTTTATAAACTA
1 AGGGTATTTCAGTAATTTTACAAACTA
* *
57239990 AGGGTACTTT-GGTAATTTTAC-AACTG
1 AGGGTA-TTTCAGTAATTTTACAAACTA
* *
57240016 GGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
57240034 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
25 3 0.04
26 18 0.22
27 57 0.69
28 5 0.06
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAACTA
Found at i:57239952 original size:54 final size:54
Alignment explanation
Indices: 57239838--57240043 Score: 184
Period size: 54 Copynumber: 3.8 Consensus size: 54
57239828 GGGTAAAACA
** *** * *
57239838 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTTGT-AATTCGAGGGTACTTTG
1 ATAATTTTACAAATCGAGGGTATTTCAGTAA-TTTTGTAAACT-AAGGGTACTTTG
** *
57239893 ATAATTTTACATGTCGAGGGTATTTCAGTAATTTTGCAAACTAAGGGTA-TTTCG
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTAAGGGTACTTT-G
* * * * *
57239947 ATAATTTTTCAAATCAAGGATATTTCGGTAATTTTATAAACTAAGGGTACTTTG
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTAAGGGTACTTTG
* * * * *
57240001 GTAATTTTACAACT-GGGGGTATTTTAGTAATTTGGTAAACTAA
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTAA
57240044 AGTATTCTAA
Statistics
Matches: 120, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
53 25 0.21
54 65 0.54
55 30 0.25
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTAAGGGTACTTTG
Found at i:57242267 original size:31 final size:30
Alignment explanation
Indices: 57242221--57242304 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 30
57242211 TCAGTCTCAA
* *
57242221 CATATACTGGATCGAAGCCTTTTCGTTAAT
1 CATATACTGGGTCGAAGCCTTTTCATTAAT
*
57242251 CATATGACTGGGTCGAAGCCTTTTCATTATT
1 CATAT-ACTGGGTCGAAGCCTTTTCATTAAT
*
57242282 CATATCACTAGGTCGAAGCCTTT
1 CATAT-ACTGGGTCGAAGCCTTT
57242305 ACTATAAATG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (30 bp):
CATATACTGGGTCGAAGCCTTTTCATTAAT
Found at i:57242558 original size:25 final size:25
Alignment explanation
Indices: 57242525--57242594 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
57242515 CTCTTTTAAT
* * *
57242525 AACTAGGGCAAAGCCCTTTTTGATG
1 AACTGGGGCAAAGCCCTTTTCGATA
*
57242550 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
57242575 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
57242595 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:57242654 original size:10 final size:10
Alignment explanation
Indices: 57242640--57242679 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
57242630 CATATATAAA
57242640 CATATCATGG
1 CATATCATGG
* *
57242650 AATATCAGGTG
1 CATATCATG-G
57242661 CATATCATGG
1 CATATCATGG
57242671 CATATCATG
1 CATATCATG
57242680 TACAATACAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (10 bp):
CATATCATGG
Found at i:57249821 original size:13 final size:13
Alignment explanation
Indices: 57249803--57249829 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57249793 ATACCTCGTG
57249803 TTAGAACGACGAA
1 TTAGAACGACGAA
57249816 TTAGAACGACGAA
1 TTAGAACGACGAA
57249829 T
1 T
57249830 GAATACATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (13 bp):
TTAGAACGACGAA
Found at i:57252064 original size:55 final size:56
Alignment explanation
Indices: 57251998--57252112 Score: 196
Period size: 55 Copynumber: 2.1 Consensus size: 56
57251988 TAGTTAATAT
* * *
57251998 GTTTGATTTTGAGGTTGTGTATATATTAAGCCATGC-GAAAATTGCTAAGTATAAA
1 GTTTGATTTTGAGGTTGTGTATATACTAAGCCATGCAAAAAATGGCTAAGTATAAA
57252053 GTTTGATTTTGAGGTTGTGTATATACTAAGCCATGCAAAAAATGGCTAAGTATAAA
1 GTTTGATTTTGAGGTTGTGTATATACTAAGCCATGCAAAAAATGGCTAAGTATAAA
57252109 GTTT
1 GTTT
57252113 AAGTTTAAGC
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
55 35 0.62
56 21 0.38
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (56 bp):
GTTTGATTTTGAGGTTGTGTATATACTAAGCCATGCAAAAAATGGCTAAGTATAAA
Found at i:57255313 original size:34 final size:33
Alignment explanation
Indices: 57255247--57255318 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 33
57255237 TGTTATCGAC
*
57255247 ACTGAAATGGGCTAAGGCCCACACTAATACTGA
1 ACTGTAATGGGCTAAGGCCCACACTAATACTGA
57255280 TACTGTAATGGGCTAAGGCCCTA-ACTGAA-ACTGA
1 -ACTGTAATGGGCTAAGGCCC-ACACT-AATACTGA
57255314 ACTGT
1 ACTGT
57255319 TACTGATACG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
33 5 0.14
34 27 0.77
35 3 0.09
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (33 bp):
ACTGTAATGGGCTAAGGCCCACACTAATACTGA
Found at i:57259776 original size:11 final size:11
Alignment explanation
Indices: 57259760--57259786 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
57259750 AATTCATTAG
57259760 TGGATTTAGTA
1 TGGATTTAGTA
57259771 TGGATTTAGTA
1 TGGATTTAGTA
57259782 TGGAT
1 TGGAT
57259787 CATCGTGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (11 bp):
TGGATTTAGTA
Found at i:57263393 original size:28 final size:28
Alignment explanation
Indices: 57263325--57263478 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
57263315 GTTGATCTCG
* * * *
57263325 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
57263354 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57263382 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57263410 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57263438 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57263465 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
57263479 GACTTAATAT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.20
28 76 0.64
29 18 0.15
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57271142 original size:28 final size:28
Alignment explanation
Indices: 57271074--57271227 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
57271064 GTTGATCTCG
* * * *
57271074 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
57271103 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57271131 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57271159 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57271187 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57271214 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
57271228 GACTTAATAT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.20
28 76 0.64
29 18 0.15
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57272920 original size:16 final size:16
Alignment explanation
Indices: 57272901--57272932 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57272891 AATTGTTTTA
57272901 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
57272917 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
57272933 ACTCGATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:57273218 original size:50 final size:50
Alignment explanation
Indices: 57273143--57273471 Score: 338
Period size: 50 Copynumber: 6.5 Consensus size: 50
57273133 CTGGTACGCA
* * *
57273143 TAGTAGCCTGCACTTAGTACTACACA-GATGACCTATCAATCTTATACACG
1 TAGTAGCCTGCACTTAGTACTACACACG-TGACCTAACAATCTGATACATG
* * * * *
57273193 TAGTAGCCTGCACTTAGTACTACACACATGACTTATCCATCTAATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATG
*
57273243 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATG
** * * * *
57273293 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACATA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTGATACATG
* * * * *
57273344 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATG
* * * * * * **
57273394 TAGTAACCTGTATTTAGTACTACACACGTGAGCTAA-AACTGTCTTAAACAAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA---TCTGATACATG
*
57273446 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
57273472 TGTGTTCTCA
Statistics
Matches: 235, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
49 2 0.01
50 163 0.69
51 42 0.18
52 28 0.12
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATG
Found at i:57273316 original size:100 final size:100
Alignment explanation
Indices: 57273142--57273471 Score: 358
Period size: 101 Copynumber: 3.3 Consensus size: 100
57273132 TCTGGTACGC
* *
57273142 ATAGTAGCCTGCACTTAGTACTACACAGATGACCTATCAATCTTATACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACAG-TGACCTAACAATCTGATACACGTAGTAGCCTGCACT
** * *
57273207 TAGTACTACACACATGA-CTTATCCATCTAATACAT
65 TAGTACTACACACATGATCGAAACCATCGAATACAT
* * *
57273242 GTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACA-GTGACCTAACAATCTGATACACGTAGTAGCCTGCACT
* * **
57273307 TAGTACTACACACGTGATCGAAACTATCGGGTACAT
65 TAGTACTACACACATGATCGAAACCATCGAATACAT
* * * * * *
57273343 ATAGTAGCCTGCACTTAGTACTACACATGCGACATAACAATCTGGTACACGTAGTAACCTGTATT
1 ATAGTAGCCTGCACTTAGTACTACACA-GTGACCTAACAATCTGATACACGTAGTAGCCTGCACT
* * * ** * *
57273408 TAGTACTACACACGTGAGCTAAAACTGTCTTAA-ACAA
65 TAGTACTACACACATGATC-GAAACCATC-GAATACAT
*
57273445 ATAGTAGCCTGCACATAGTACTACACA
1 ATAGTAGCCTGCACTTAGTACTACACA
57273472 TGTGTTCTCA
Statistics
Matches: 195, Mismatches: 31, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
100 74 0.38
101 85 0.44
102 36 0.18
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (100 bp):
ATAGTAGCCTGCACTTAGTACTACACAGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACATGATCGAAACCATCGAATACAT
Found at i:57273369 original size:151 final size:152
Alignment explanation
Indices: 57273193--57273471 Score: 362
Period size: 151 Copynumber: 1.8 Consensus size: 152
57273183 CTTATACACG
* * * * * *
57273193 TAGTAGCCTGCACTTAGTACTACACACATGACTTATCCATCTAATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACACGACATAACAATCTAATACACGTAGTAACCTGCACTT
* ** *
57273258 AGTACTACACACGTGACCT-AACCATCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGT
66 AGTACTACACACGTGACCTAAACCATCTGAAACAAATAGTAGCCTGCACATAGTACTACACACGT
57273322 GATCGAAACTATCGGGTACATA
131 GATCGAAACTATCGGGTACATA
** ** * *
57273344 TAGTAGCCTGCACTTAGTACTACACATGCGACATAACAATCTGGTACACGTAGTAACCTGTATTT
1 TAGTAGCCTGCACTTAGTACTACACACACGACATAACAATCTAATACACGTAGTAACCTGCACTT
* ** *
57273409 AGTACTACACACGTGAGCTAAAACTGTCTTAAACAAATAGTAGCCTGCACATAGTACTACACA
66 AGTACTACACACGTGACCT-AAACCATCTGAAACAAATAGTAGCCTGCACATAGTACTACACA
57273472 TGTGTTCTCA
Statistics
Matches: 106, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
151 71 0.67
153 35 0.33
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (152 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACATAACAATCTAATACACGTAGTAACCTGCACTT
AGTACTACACACGTGACCTAAACCATCTGAAACAAATAGTAGCCTGCACATAGTACTACACACGT
GATCGAAACTATCGGGTACATA
Found at i:57276447 original size:15 final size:15
Alignment explanation
Indices: 57276414--57276473 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
57276404 TATAGATAAC
* * *
57276414 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
57276429 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
57276444 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
57276459 AGGAAATCCAAGATA
1 AAGAAATCCAAGATA
57276474 CAATATCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 39 1.00
ACGTcount: A:0.55, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:57280049 original size:50 final size:50
Alignment explanation
Indices: 57279983--57280377 Score: 375
Period size: 50 Copynumber: 7.8 Consensus size: 50
57279973 CTCTGGTATG
* *
57279983 CATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACA
* * * * *
57280033 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAGCCATCTGATACA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACA
* * ** * * * *
57280083 CGTAGTAGCCTTCTTTTAGTACTACACATGTGATCAAAGTTAA-C-GAGTACG
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTGA-TACA
* * * *
57280134 TATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT-TCGATACA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCT-GATACA
* * *
57280184 CATGGTAGCCTAAACTTAGTACTACACATGTGACCTAACCATCAT-ATACA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATC-TGATACA
** * * *
57280234 TGTAGTAGCCTACATTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACA
* * * * *
57280284 CGTAGTAGCGTACACTTAGTACTACACATGTGACCTAAAACTATCTTAAACA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCT--AACAATCTGATACA
* * * *
57280336 CATAGTAGCCTGCACATAGTACTACACATGTGATCTTACAAT
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAAT
57280378 GGATCATTGG
Statistics
Matches: 275, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
49 3 0.01
50 194 0.71
51 35 0.13
52 43 0.16
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (50 bp):
CATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACA
Found at i:57280258 original size:151 final size:151
Alignment explanation
Indices: 57279984--57280368 Score: 420
Period size: 151 Copynumber: 2.5 Consensus size: 151
57279974 TCTGGTATGC
* * **
57279984 ATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAGCCTGCACT
1 ATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGATACACATAGTAGCCTAAACT
* * * *
57280049 TAGTACTACACACGTGACTTAGCCATCTGATACACGTAGTAGCCTTCTTTTAGTACTACACATGT
66 TAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACATTTAGTACTACACATGT
57280114 GATCAAAGTTAACGAGTACGT
131 GATCAAAGTTAACGAGTACGT
* *
57280135 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT-TCGATACACATGGTAGCCTAAAC
1 ATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCT-GATACACATAGTAGCCTAAAC
* *
57280199 TTAGTACTACACATGTGACCTAACCATCAT-ATACATGTAGTAGCCTACATTTAGTACTACACAT
65 TTAGTACTACACACGTGACCTAACCATC-TGATACACGTAGTAGCCTACATTTAGTACTACACAT
* * * * **
57280263 GCGACCTAA--CAATCTG-GTACAC
129 GTGATCAAAGTTAA-C-GAGTACGT
* * * * * * * **
57280285 GTAGTAGCGTACACTTAGTACTACACATGTGACCTAAAACTATCTTAAACACATAGTAGCCTGCA
1 ATAGTAGCCTACACTTAGTACTACACATGCGACCT--ATCAATCTGATACACATAGTAGCCTAAA
* *
57280350 CATAGTACTACACATGTGA
64 CTTAGTACTACACACGTGA
57280369 TCTTACAATG
Statistics
Matches: 197, Mismatches: 30, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
149 2 0.01
150 37 0.19
151 119 0.60
152 38 0.19
153 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (151 bp):
ATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGATACACATAGTAGCCTAAACT
TAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACATTTAGTACTACACATGT
GATCAAAGTTAACGAGTACGT
Found at i:57281884 original size:34 final size:34
Alignment explanation
Indices: 57281832--57281898 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
57281822 TATTATCGAC
* *
57281832 ATTGAAATGGGCTAAGGCCC-ACACTGATACTGAT
1 ATTGAAATAGGCTAAGGCCCTA-ACTGAAACTGAT
*
57281866 ATTGTAATAGGCTAAGGCCCTAACTGAAACTGA
1 ATTGAAATAGGCTAAGGCCCTAACTGAAACTGA
57281899 ACTGTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (34 bp):
ATTGAAATAGGCTAAGGCCCTAACTGAAACTGAT
Found at i:57301911 original size:21 final size:20
Alignment explanation
Indices: 57301878--57301916 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
57301868 AAGACTAAAC
57301878 CGAACACATACAAATTTTTTT
1 CGAACACATAC-AATTTTTTT
57301899 CGAA-ACATAACAATTTTT
1 CGAACACAT-ACAATTTTT
57301917 CTAAGTTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (20 bp):
CGAACACATACAATTTTTTT
Found at i:57304776 original size:39 final size:40
Alignment explanation
Indices: 57304731--57304898 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
57304721 CGGGGTTTAG
* * *
57304731 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
57304770 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
57304810 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
57304850 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
57304891 CCGGATAT
1 CCGGATAT
57304899 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:57304881 original size:41 final size:40
Alignment explanation
Indices: 57304754--57304898 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57304744 CTCGCACAAG
* * * * *
57304754 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57304794 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57304834 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57304875 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
57304899 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57312819 original size:39 final size:40
Alignment explanation
Indices: 57312774--57312941 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
57312764 CGGGGTTTAG
* * *
57312774 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
57312813 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
57312853 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
57312893 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
57312934 CCGGATAT
1 CCGGATAT
57312942 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:57312924 original size:41 final size:40
Alignment explanation
Indices: 57312797--57312941 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57312787 CTCGCACAAG
* * * * *
57312797 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57312837 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57312877 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57312918 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
57312942 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57317312 original size:46 final size:44
Alignment explanation
Indices: 57317223--57317346 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 44
57317213 TATGTGTGCT
* *
57317223 AGTGTAAGACATGTTTGGGACATGCATCGGCCCCATTATGAGAGCC
1 AGTGTAAGACATGTATGGGACATGCATCGG--CCATTACGAGAGCC
* * *
57317269 AGTGTAACACATGTCTGGGACATGCATCGG-CATTGAGACGAGAGCT
1 AGTGTAAGACATGTATGGGACATGCATCGGCCATT---ACGAGAGCC
* *
57317315 AGTGTAAGACATGTATGGGAGATGCATTGGCC
1 AGTGTAAGACATGTATGGGACATGCATCGGCC
57317347 TCGAGATATA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
43 4 0.06
46 61 0.92
47 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTATGGGACATGCATCGGCCATTACGAGAGCC
Found at i:57317494 original size:49 final size:49
Alignment explanation
Indices: 57317422--57317522 Score: 121
Period size: 49 Copynumber: 2.1 Consensus size: 49
57317412 AGGACTTGTT
* * * *
57317422 TGGGACATGGCATTAACATCGATAGATTAGAGCCAATGTAAGACCTGTC
1 TGGGACACGGCATCAACATCGATAGATGAAAGCCAATGTAAGACCTGTC
* * * * *
57317471 TGGGACACGGCATCCACCTCGATATATGAAAGTCAGTGTAAGACCTGTC
1 TGGGACACGGCATCAACATCGATAGATGAAAGCCAATGTAAGACCTGTC
57317520 TGG
1 TGG
57317523 AACATAGCAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
TGGGACACGGCATCAACATCGATAGATGAAAGCCAATGTAAGACCTGTC
Found at i:57319306 original size:18 final size:19
Alignment explanation
Indices: 57319283--57319320 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
57319273 TGGTACACCA
57319283 AAACAT-ATATCA-CATCTT
1 AAACATCAT-TCATCATCTT
57319301 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
57319320 A
1 A
57319321 CCACCTTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (19 bp):
AAACATCATTCATCATCTT
Found at i:57319684 original size:47 final size:46
Alignment explanation
Indices: 57319536--57319708 Score: 183
Period size: 47 Copynumber: 3.7 Consensus size: 46
57319526 AACCCGCCCC
* * * *
57319536 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTTGCATCCA
* * * *
57319582 TAAATGAACTC-GACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CT-TTTGCATCCA
* *
57319629 TCA-CGAACTCGGACTCAACTCAACGAGGTTCGGACTTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGA-GTTCGGACTTTTGCATCCA
57319675 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57319709 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
44 5 0.05
45 22 0.21
46 25 0.24
47 38 0.37
48 9 0.09
49 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTTGCATCCA
Found at i:57326821 original size:19 final size:20
Alignment explanation
Indices: 57326797--57326834 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57326787 GGTACCACCA
57326797 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
57326816 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
57326835 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:57327171 original size:93 final size:93
Alignment explanation
Indices: 57327061--57327231 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
57327051 GCCCCTAAGT
* *
57327061 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57327126 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
57327154 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57327219 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57327232 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57327228 original size:46 final size:46
Alignment explanation
Indices: 57327056--57327228 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
57327046 AACCCGCCCC
* * * *
57327056 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
57327102 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
57327150 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
57327195 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57327229 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:57334385 original size:19 final size:20
Alignment explanation
Indices: 57334361--57334398 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57334351 GGTACCACCA
57334361 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
57334380 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
57334399 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:57334741 original size:92 final size:92
Alignment explanation
Indices: 57334628--57334796 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
57334618 GCCCCTAAGT
* *
57334628 GAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
57334693 GAGTT-GGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
57334719 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57334784 CGAGTTCGGATGC
65 CGAGTTCGGATGC
57334797 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 6 0.08
92 59 0.83
93 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57334793 original size:46 final size:46
Alignment explanation
Indices: 57334623--57334793 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
57334613 AACCCGCCCC
* * * *
57334623 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
57334668 TAAATGAACTCGGACTCAACTCAACGAGTT-GGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
57334715 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
57334760 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57334794 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 14 0.13
46 71 0.68
47 5 0.05
48 2 0.02
49 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:57338286 original size:46 final size:44
Alignment explanation
Indices: 57338219--57338386 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 44
57338209 TTTCATGGCC
57338219 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTTGA-GCT
* * **
57338265 GATGCATGTCCCATACATGTCTTACACTAGCGC-TCTTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTTCATCTTGA-GCT
** *
57338311 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTTG-AGCT
*
57338359 GATGCATGTCTCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
57338387 AGCTCACACA
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
46 51 0.50
47 29 0.28
48 21 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTTGAGCT
Found at i:57338383 original size:94 final size:92
Alignment explanation
Indices: 57338219--57338389 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 92
57338209 TTTCATGGCC
** * *
57338219 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCTGATGCATGTCCCATACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
57338284 TCTTACACTAGCGCTCTTCTCAATGCT
66 TCTTACACTAGCGCTCTTCTCAATGCT
*
57338311 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTA-GCCGATGCATGTCTCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAATG-AGGCCGATGCATGTCCCAGA
57338374 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
57338390 TCACACAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 50 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCGCTCTTCTCAATGCT
Found at i:57345534 original size:46 final size:47
Alignment explanation
Indices: 57345411--57345541 Score: 119
Period size: 47 Copynumber: 2.8 Consensus size: 47
57345401 CACATTTCAC
*
57345411 GGCCGATGCATGTCCCAGACATGTCTTACATTAGCGCTCGTCTCAATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCAATGT
* * * * *
57345460 ---AGTTGCCATGTCCTAAACAGGGTCTTACACTGGCTC-TCAT-AATGT
1 GGCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCGTC-TCAATGT
*
57345505 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
57345542 ACACAAGTCA
Statistics
Matches: 64, Mismatches: 12, Indels: 15
0.70 0.13 0.16
Matches are distributed among these distances:
45 7 0.11
46 22 0.34
47 23 0.36
48 12 0.19
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (47 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCAATGT
Found at i:57348126 original size:19 final size:17
Alignment explanation
Indices: 57348086--57348128 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
57348076 TTCCCGTGTG
*
57348086 TGGCCCACAGGCCCATT
1 TGGCCCACAAGCCCATT
*
57348103 GGGCCCACACAGCCCAATT
1 TGGCCCACA-AGCCC-ATT
57348122 TGGCCCA
1 TGGCCCA
57348129 GAATGGCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.21, C:0.42, G:0.23, T:0.14
Consensus pattern (17 bp):
TGGCCCACAAGCCCATT
Found at i:57351679 original size:27 final size:27
Alignment explanation
Indices: 57351646--57352041 Score: 241
Period size: 27 Copynumber: 14.7 Consensus size: 27
57351636 CCTCAAATTG
*
57351646 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ***
57351673 TAGAATTACC-GTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***
57351699 CAAAATTATCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ** *** *
57351726 TAGAATTATTATTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *** *
57351753 CAAAATTACTATTTTACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
57351780 CAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
57351807 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
57351833 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAAATACCCTCGATTTA
* * * *
57351860 TAAAATTGCTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
57351887 TAAAATTACCGAAATACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
57351914 TAAAATTACCAAAATATCCCTAG-TTTG
1 TAAAATTACCAAAATA-CCCTCGATTTA
* *
57351941 TAAAATTACCAAAATACCACTAG-TTTG
1 TAAAATTACCAAAATACC-CTCGATTTA
* * * * *
57351968 TGAAATTACCGAAATATCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
57351995 TAAAATTACCAAAATACCC-CTGATTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
57352022 CAAAGTTA-CAGAAATACCCT
1 TAAAATTACCA-AAATACCCT
57352042 TGACTTTCTA
Statistics
Matches: 299, Mismatches: 58, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
26 47 0.16
27 247 0.83
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:57351825 original size:54 final size:54
Alignment explanation
Indices: 57351740--57352126 Score: 244
Period size: 54 Copynumber: 7.1 Consensus size: 54
57351730 ATTATTATTT
* * *** ** *
57351740 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* **
57351794 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* * ** * * ** *
57351848 TACCC-TAGTCTGTAAAATTGCTAAAATACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAA
*** * *
57351901 TACCCTCAATTTATAAAATTACCAAAATATCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATA-CCCTCAATTTGTAAAATTACCAAAA
* *** * *
57351955 TACCAC-TAGTTTGTGAAATTACCGAAATATCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* * * * * * ***
57352009 TACCCCTGATTTACAAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTTGGTTTACAAAATTACCA-AAATACCC-TCAATTTGT-AAAATTACCAAAA
* ** *** * *
57352065 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
*
57352119 CACCCTTG
1 TACCCTTG
57352127 TAGGATGAAA
Statistics
Matches: 255, Mismatches: 67, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
52 1 0.00
53 46 0.18
54 158 0.62
55 15 0.06
56 35 0.14
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
Found at i:57351974 original size:81 final size:80
Alignment explanation
Indices: 57351781--57352013 Score: 290
Period size: 81 Copynumber: 2.9 Consensus size: 80
57351771 CTCAATTTAC
* * ** * * *
57351781 AAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACC
1 AAAATTACCAAAATACCAC-TAGTTTGTAAAATTACCGAAATACCCTCAATTTA-TAAAATTACC
57351844 AAAATACCCTAGTCTGT
64 AAAATACCCTAGTCTGT
* * * *
57351861 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
1 AAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
*
57351926 AATATCCCTAGTTTGT
66 AATA-CCCTAGTCTGT
* * *
57351942 AAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATATCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
57352007 AATACCC
66 AATACCC
57352014 CTGATTTACA
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
80 61 0.45
81 75 0.55
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
AATACCCTAGTCTGT
Found at i:57352091 original size:27 final size:27
Alignment explanation
Indices: 57352052--57352103 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
57352042 TGACTTTCTA
57352052 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
57352079 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
57352104 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:57352248 original size:27 final size:27
Alignment explanation
Indices: 57352148--57352248 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
57352138 GACTAAAATA
*
57352148 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAATGACCGTAAAG
*
57352175 CCCCTATAGGGTAAAGTGACCGTAAAG
1 CCCCTATAGGGTAAAATGACCGTAAAG
* *
57352202 CCCCTGTAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAATGACCGTAA-AG
* *
57352229 CCCCTGTATGGTAAAATGAC
1 CCCCTATAGGGTAAAATGAC
57352249 GAATATGCTC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.03
27 64 0.96
28 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGACCGTAAAG
Found at i:57352596 original size:20 final size:21
Alignment explanation
Indices: 57352562--57352601 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57352552 GCACGATGGT
57352562 AAATTGGGCCTCAATAGGCTA
1 AAATTGGGCCTCAATAGGCTA
*
57352583 AAATTGGGCC-CAATGGGCT
1 AAATTGGGCCTCAATAGGCT
57352602 TTTGGACCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATTGGGCCTCAATAGGCTA
Found at i:57353079 original size:26 final size:26
Alignment explanation
Indices: 57353050--57353199 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
57353040 GAGGAAGTGC
57353050 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
57353076 AAAATGGCTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57353102 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
57353128 AAAAAGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
57353154 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57353180 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
57353200 ATTAAAGAGG
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
25 10 0.09
26 102 0.91
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:57353184 original size:78 final size:75
Alignment explanation
Indices: 57353050--57353211 Score: 261
Period size: 78 Copynumber: 2.1 Consensus size: 75
57353040 GAGGAAGTGC
* * *
57353050 AAAAGGGCTTATGCCCCAGTTTATTGAAAATGGCTTATGCCTCAGTTTACCGAAAAGGGCTTATG
1 AAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TG
57353115 CCCCAGTTTATT
65 CCCCAG-TTATT
57353127 GAAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTG
1 -AAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTG
57353192 CCCCAGTTATT
65 CCCCAGTTATT
*
57353203 AAAGAGGCT
1 AAAAAGGCT
57353212 AGGCCTCCAG
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
75 8 0.10
76 5 0.06
77 8 0.10
78 59 0.74
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (75 bp):
AAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGC
CCCAGTTATT
Found at i:57353403 original size:42 final size:42
Alignment explanation
Indices: 57353344--57353435 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
57353334 TAGTCTCCCC
* ** *
57353344 AAATGGGCTTACATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
*
57353386 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
57353428 AAATGGGC
1 AAATGGGC
57353436 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
Found at i:57353536 original size:31 final size:31
Alignment explanation
Indices: 57353459--57353537 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
57353449 CGTTTACAGT
*
57353459 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
**
57353490 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
57353521 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCAGCCCAGT
57353538 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:57360133 original size:39 final size:39
Alignment explanation
Indices: 57360075--57360402 Score: 377
Period size: 39 Copynumber: 8.4 Consensus size: 39
57360065 GATGTATATT
57360075 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
* * * * * * *
57360114 CGGACTAAAGATCCACAGGCTTCGTACTGGTACTATATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
* * *
57360153 CAGACTTAAAGTCTGCAGGCTTCGTGCTGGAATTGTATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
** *
57360192 AAGACTTAAGGTCCGCAGGCGTCGTGCTGGAATTGTATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
57360231 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
* * *
57360270 CGGGCTTAAAGACCTGCAGGCTTCGTGCTGGAATTGTATC
1 CGGACTTAAGGTCC-GCAGGCTTCGTGCTGGAATTGTATC
* * * * * *
57360310 CGGACTTAAGATCCGAAGGCTTCGTACTGGTACTATATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
* * * * * *
57360349 CGGACTTAAGGTCCACAGGCTTTGTACTGGCACTATATC
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
* *
57360388 CGGGCTTAAAGTCCG
1 CGGACTTAAGGTCCG
57360403 GTAGGCTTTG
Statistics
Matches: 244, Mismatches: 44, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 209 0.86
40 35 0.14
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (39 bp):
CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATC
Found at i:57361984 original size:40 final size:40
Alignment explanation
Indices: 57361940--57362119 Score: 248
Period size: 40 Copynumber: 4.7 Consensus size: 40
57361930 GCTACTCGTT
*
57361940 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
57361980 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
57362020 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAA----CA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
57362055 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
57362095 CCAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57362120 CATCATTCGA
Statistics
Matches: 124, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 15 0.12
36 17 0.14
39 27 0.22
40 63 0.51
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57362075 original size:75 final size:75
Alignment explanation
Indices: 57361978--57362119 Score: 284
Period size: 75 Copynumber: 1.9 Consensus size: 75
57361968 TAGTAACTCG
57361978 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCG
57362043 GAATTAGTAA
66 GAATTAGTAA
57362053 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCG
57362118 GA
66 GA
57362120 CATCATTCGA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (75 bp):
CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCG
GAATTAGTAA
Found at i:57370205 original size:79 final size:78
Alignment explanation
Indices: 57370090--57370298 Score: 328
Period size: 79 Copynumber: 2.6 Consensus size: 78
57370080 TACTCGTTCA
* ** * *
57370090 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACTCGGAT
1 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
57370155 TTAGTAACTCGCACC
64 TTAGTAACTCGCACC
57370170 AATGCCTTCGGGCTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGCTTAGCCC-GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
57370235 TAGTAACTCGCACC
65 TAGTAACTCGCACC
*
57370249 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGG
1 AATGCCTTCGGGCTTAGCCC-GAATTAGTAACTCGCACAAATGCCTTCGG
57370299 ATCTTAGTCC
Statistics
Matches: 121, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
79 107 0.88
80 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
AATGCCTTCGGGCTTAGCCCGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
AGTAACTCGCACC
Found at i:57370213 original size:39 final size:40
Alignment explanation
Indices: 57370088--57370351 Score: 322
Period size: 40 Copynumber: 6.7 Consensus size: 40
57370078 GCTACTCGTT
*
57370088 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
57370128 CAAATGCCTTTGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
57370168 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
57370207 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
57370247 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
57370286 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
57370327 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57370352 CATCATTCGA
Statistics
Matches: 191, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 66 0.35
40 111 0.58
41 12 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57370305 original size:119 final size:121
Alignment explanation
Indices: 57370088--57370351 Score: 333
Period size: 119 Copynumber: 2.2 Consensus size: 121
57370078 GCTACTCGTT
* * *
57370088 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAACTCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * *
57370152 GATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCAGAAT-TAGTAAC-TCGCA
66 GAATTAGTAACTCACACAAATGCCTTCGGGCTTAGCCC-GAATATAGTAACTTAGCA
* * *
57370207 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * * *
57370270 GAATTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCACACAAATGCCTTCGG-GCTTAGCCCGAATATAGTAACTTAGCA
57370327 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57370352 CATCATTCGA
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
118 36 0.29
119 79 0.63
120 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCACACAAATGCCTTCGGGCTTAGCCCGAATATAGTAACTTAGCA
Found at i:57370311 original size:79 final size:78
Alignment explanation
Indices: 57370090--57370351 Score: 325
Period size: 79 Copynumber: 3.3 Consensus size: 78
57370080 TACTCGTTCA
* * *
57370090 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAACTCGGA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCC-TTCGGACTTAAC-CGGA
57370154 TTTAGTAACTCGCACC
63 TTTAGTAACTCGCACC
*
57370170 AATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGACTTAA-CCGGAT
57370234 TTAGTAACTCGCACC
64 TTAGTAACTCGCACC
* *
57370249 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGA-CTTA-ACCGGAT
* * * *
57370313 ATGGTCACTTAGCA-C
64 TTAGTAAC-TCGCACC
*
57370328 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57370352 CATCATTCGA
Statistics
Matches: 163, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
78 5 0.03
79 129 0.79
80 29 0.18
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGACTTAACCGGATTT
AGTAACTCGCACC
Found at i:57375553 original size:19 final size:20
Alignment explanation
Indices: 57375529--57375567 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
57375519 ACTTTTCAGA
57375529 TAATTATTTC-AACAATAAT
1 TAATTATTTCTAACAATAAT
*
57375548 TAATTATTTCTCACAATAAT
1 TAATTATTTCTAACAATAAT
57375568 ATTATCTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (20 bp):
TAATTATTTCTAACAATAAT
Found at i:57380625 original size:15 final size:15
Alignment explanation
Indices: 57380593--57380635 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
57380583 ATTATAATAA
*
57380593 AAATAATAAGAACA-T
1 AAATAA-AAGAAAATT
*
57380608 AAATAAAATAAAATT
1 AAATAAAAGAAAATT
57380623 AAATAAAAGAAAA
1 AAATAAAAGAAAA
57380636 GCAAGAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (15 bp):
AAATAAAAGAAAATT
Found at i:57381794 original size:31 final size:31
Alignment explanation
Indices: 57381756--57381816 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
57381746 ATAATGAATG
57381756 AATTAATTATTAAATGTATTTAAATTGTAAA
1 AATTAATTATTAAATGTATTTAAATTGTAAA
*
57381787 AATTAATTATTAAGTGTATTTAAATTGTAA
1 AATTAATTATTAAATGTATTTAAATTGTAA
57381817 TTAATTGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (31 bp):
AATTAATTATTAAATGTATTTAAATTGTAAA
Found at i:57384799 original size:21 final size:21
Alignment explanation
Indices: 57384774--57384813 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
57384764 TACAATTCAT
57384774 TATTTCACA-ATTTTCACAATG
1 TATTTCACACATTTT-ACAATG
*
57384795 TATTTTACACATTTTACAA
1 TATTTCACACATTTTACAA
57384814 ATAAATCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (21 bp):
TATTTCACACATTTTACAATG
Found at i:57394195 original size:35 final size:35
Alignment explanation
Indices: 57394155--57394225 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
57394145 AGGGCAATAG
* *
57394155 TGTAAATTTGCCTTAATGTGTATTTTGGACTAAAT
1 TGTAAATTTGCCCTAATGTGTATTTTGGAATAAAT
*
57394190 TGTAAATTTTCCCTAATGTGTATTTTGGAATAAAT
1 TGTAAATTTGCCCTAATGTGTATTTTGGAATAAAT
57394225 T
1 T
57394226 AAATAGAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.46
Consensus pattern (35 bp):
TGTAAATTTGCCCTAATGTGTATTTTGGAATAAAT
Done.