Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 168 of 311
Found at i:57404334 original size:40 final size:40
Alignment explanation
Indices: 57404286--57404476 Score: 258
Period size: 40 Copynumber: 4.8 Consensus size: 40
57404276 CGAATGATAA
*
57404286 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
57404326 CCGAGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
57404366 CAGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
57404406 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
57404446 CTGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
57404477 AGCTATATCC
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 8 0.06
40 126 0.94
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:57406323 original size:53 final size:53
Alignment explanation
Indices: 57406261--57406365 Score: 210
Period size: 53 Copynumber: 2.0 Consensus size: 53
57406251 TCATATCGCC
57406261 TGAAGTTAAATTTGCATAAAACTCACGAACTAGTTCCTCATCCACACTTGGTA
1 TGAAGTTAAATTTGCATAAAACTCACGAACTAGTTCCTCATCCACACTTGGTA
57406314 TGAAGTTAAATTTGCATAAAACTCACGAACTAGTTCCTCATCCACACTTGGT
1 TGAAGTTAAATTTGCATAAAACTCACGAACTAGTTCCTCATCCACACTTGGT
57406366 CTCTTTTCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (53 bp):
TGAAGTTAAATTTGCATAAAACTCACGAACTAGTTCCTCATCCACACTTGGTA
Found at i:57417847 original size:47 final size:47
Alignment explanation
Indices: 57417781--57418083 Score: 211
Period size: 47 Copynumber: 6.4 Consensus size: 47
57417771 TTTGTATGCT
*
57417781 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* *
57417827 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACATTAAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * * * *
57417875 AGTGTAAGA-CATGTTTGGGACAT-GTATCGGCTAC--GA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATTATGA-GAGCC
* * * *
57417919 AGTGTAAGACCATGT-TGGGACATGGCATCGGCAC-GTATAAAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTAT-GA-GAGCC
* * * *
57417966 AGTGTAAGACCATGTCTAGGACATGGCAACGGCACGAATATCTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--AT-TATGAGAGCC
*
57418016 AGTGTAAGACCATGTCTGGGACATGGCAT-TG-AC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCC
* *
57418063 AGTGTAAGACTATGTTTGGGA
1 AGTGTAAGACCATGTCTGGGA
57418084 GATGACATTG
Statistics
Matches: 207, Mismatches: 28, Indels: 43
0.74 0.10 0.15
Matches are distributed among these distances:
43 2 0.01
44 23 0.11
45 20 0.10
46 15 0.07
47 72 0.35
48 40 0.19
49 3 0.01
50 29 0.14
51 1 0.00
52 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:57419491 original size:46 final size:46
Alignment explanation
Indices: 57419441--57419616 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
57419431 TGATTGAGCA
57419441 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57419487 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57419532 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57419580 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57419617 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57419597 original size:93 final size:93
Alignment explanation
Indices: 57419438--57419609 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
57419428 GGATGATTGA
*
57419438 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
57419503 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57419531 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
57419595 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
57419610 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57427016 original size:46 final size:46
Alignment explanation
Indices: 57426966--57427141 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
57426956 TGATTGAGCA
57426966 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57427012 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57427057 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57427105 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57427142 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57427122 original size:93 final size:93
Alignment explanation
Indices: 57426963--57427134 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
57426953 GGATGATTGA
*
57426963 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
57427028 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57427056 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
57427120 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
57427135 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57431109 original size:49 final size:49
Alignment explanation
Indices: 57431043--57431274 Score: 252
Period size: 49 Copynumber: 4.7 Consensus size: 49
57431033 TCTATTATGA
* *
57431043 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* * * *
57431092 GGTCGCATGTGTAGTACTAAGAGCAGGCTACTATGCGTACTC-GATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGGATAA-TT
* * * * **
57431142 CGATCA-TTCGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACAT-GTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* * * * *
57431192 AGGCCACGTCTGTAGTACTAAGTGCAGGCTCCTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
57431242 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
57431275 TGCGTACTAG
Statistics
Matches: 147, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
49 67 0.46
50 46 0.31
51 34 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
Found at i:57442728 original size:19 final size:19
Alignment explanation
Indices: 57442704--57442742 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
57442694 TTACCAACCC
57442704 AAAATACCATATTTGTACA
1 AAAATACCATATTTGTACA
***
57442723 AAAATATTGTATTTGTACA
1 AAAATACCATATTTGTACA
57442742 A
1 A
57442743 TCATATTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (19 bp):
AAAATACCATATTTGTACA
Found at i:57443515 original size:42 final size:45
Alignment explanation
Indices: 57443448--57443579 Score: 150
Period size: 44 Copynumber: 3.0 Consensus size: 45
57443438 CCCAAATTCA
* *
57443448 TTCACTGGCATT-TTGCCTACTAGGCTTG-AAGCCCG-ATA-TCAT
1 TTCACTGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAGT-AT
*
57443490 TTCACTGACATTATAGCCTAC-AGGCTCGAAAGCCCGAATAGTAT
1 TTCACTGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAGTAT
* * *
57443534 CTCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTAT
1 TTCACTGGCATTATAGCCTACTAGGCTCGAAA-GCCCGAATAGTAT
57443579 T
1 T
57443580 GTGCGATATT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
42 17 0.22
43 14 0.18
44 25 0.33
45 20 0.26
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (45 bp):
TTCACTGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAGTAT
Found at i:57444436 original size:47 final size:46
Alignment explanation
Indices: 57444380--57444474 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 46
57444370 AAAATTTTCT
57444380 TTAACTAAGTAACTTATCCGGAAATATGAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATGAAGAGC-AATTTAACAAGC
*
57444427 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATGAAGAGCAATTTAACAAGC
57444473 TT
1 TT
57444475 TAAATTCAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 14 0.30
47 33 0.70
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATATGAAGAGCAATTTAACAAGC
Found at i:57467520 original size:48 final size:47
Alignment explanation
Indices: 57467422--57467786 Score: 295
Period size: 48 Copynumber: 7.8 Consensus size: 47
57467412 TTATTTGTAT
* * * *
57467422 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGC-CAGATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GA-GACGAGA
* * *
57467468 GCTAGTCTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAGACGAGA
* * *
57467516 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAGACGAGA
* * *
57467561 TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAGACGAGA
* * *
57467608 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAGACGAGA
* * * * * * * *
57467653 TC-AGTATAAGACCATGTTTGGGACATGGCATCGACACGTATAGGGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-AGACGAGA
* * *
57467700 G-TCAGTGTAAGATCATGTCTGGGACATGGCATCAGCACGAATATGCGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-AGA--CGAGA
*
57467750 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
57467787 TTATACCCTA
Statistics
Matches: 255, Mismatches: 44, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
44 17 0.07
45 31 0.12
46 62 0.24
47 43 0.17
48 65 0.25
49 2 0.01
50 34 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAGACGAGA
Found at i:57467600 original size:92 final size:91
Alignment explanation
Indices: 57467422--57467685 Score: 377
Period size: 92 Copynumber: 2.8 Consensus size: 91
57467412 TTATTTGTAT
* * * * * *
57467422 GCTAGTGTAAGACATGTCTAGGACATGCATC-AGCCAGATTATGAGAGCTAGTCTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CTAGA-GATGTG-TC-AGTATAAGACCATGT
* *
57467486 CTGGGACATGGCATCGGTATTGAGACGAGA
62 TTGGGACATGGCATCGGCATTGAGACGAGA
*
57467516 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTGTAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTA-GAGATGTGTCAGTATAAGACCATGTTTG
57467581 GGACATGGCATCGGCATTGAGACGAGA
65 GGACATGGCATCGGCATTGAGACGAGA
*
57467608 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTATAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTA-GAGATGTGTCAGTATAAGACCATGTTTG
57467673 GGACATGGCATCG
65 GGACATGGCATCG
57467686 ACACGTATAG
Statistics
Matches: 157, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
92 117 0.75
93 1 0.01
94 36 0.23
95 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACTAGAGATGTGTCAGTATAAGACCATGTTTGG
GACATGGCATCGGCATTGAGACGAGA
Found at i:57467706 original size:140 final size:140
Alignment explanation
Indices: 57467425--57467777 Score: 386
Period size: 140 Copynumber: 2.5 Consensus size: 140
57467415 TTTGTATGCT
* ** * *
57467425 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGC-CAGATTA-TGAGAGCTAGTCTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-GAAGAGCGAGAGCTAGTGTAAGACCATGT
*
57467486 CTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGACT
65 CTGGGACAT-GCATCGGTATTGAGACGAGAGCTAGTATAAGACATGTCTGGGACATGCATCGACT
*
57467551 ACGAGATGTGTC
129 ACGAGAGGTGTC
* * *
57467563 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-AGA-CGAGAGCTAGTGTAAGA-CATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGAAGAGCGAGAGCTAGTGTAAGACCATGT
* * * *
57467625 CTGGGACATGCATCGGCTA-TGAGATGTG-TC-AGTATAAGACCATGTTTGGGACATGGCATCGA
65 CTGGGACATGCATCGG-TATTGAGACGAGAGCTAGTATAAGA-CATGTCTGGGACAT-GCATCGA
*
57467687 C-ACGTATAGGGGTGTC
127 CTACG---AGAGGTGTC
* *
57467703 AGTGTAAGATCATGTCTGGGACATGGCATCAGCACGAATATGCGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGA-GCGAGAGCTAGTGTAAGACCATGT
57467768 CTGGGACATG
65 CTGGGACATG
57467778 GCATTGGCAT
Statistics
Matches: 181, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
136 8 0.04
137 17 0.09
138 31 0.17
139 29 0.16
140 63 0.35
141 1 0.01
142 17 0.09
143 15 0.08
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGAGCGAGAGCTAGTGTAAGACCATGTC
TGGGACATGCATCGGTATTGAGACGAGAGCTAGTATAAGACATGTCTGGGACATGCATCGACTAC
GAGAGGTGTC
Found at i:57467707 original size:92 final size:92
Alignment explanation
Indices: 57467422--57467732 Score: 351
Period size: 92 Copynumber: 3.3 Consensus size: 92
57467412 TTATTTGTAT
* * * * * *
57467422 GCTAGTGTAAGACATGTCTAGGACATGCATC-AGCCA-GATTATGAGAGCTAGTCTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CTACGA-GATGTG-TC-AGTATAAGACCATG
* ** *
57467485 TCTGGGACATGGCATCGGTATTGAGACGAGA
62 TTTGGGACATGGCATCGACAGTGAGACGAGA
*
57467516 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTGTAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
* *
57467581 GGACATGGCATCGGCATTGAGACGAGA
66 GGACATGGCATCGACAGTGAGACGAGA
* *
57467608 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTATAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
* * * *
57467673 GGACATGGCATCGACACGT-ATAGGGGT
66 GGACATGGCATCGACA-GTGAGACGAGA
57467700 G-TCAGTGTAAGATCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
57467733 AGCACGAATA
Statistics
Matches: 194, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
91 1 0.01
92 133 0.69
93 16 0.08
94 41 0.21
95 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
GGACATGGCATCGACAGTGAGACGAGA
Found at i:57469205 original size:27 final size:28
Alignment explanation
Indices: 57469143--57469206 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
57469133 CAGTCACTTG
*
57469143 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
57469171 CCC-TAAGGGCAAAATTGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
57469197 CCCACAAGGG
1 CCCACAAGGG
57469207 TATCTCGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.19
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:57469325 original size:27 final size:27
Alignment explanation
Indices: 57469187--57469354 Score: 167
Period size: 27 Copynumber: 6.2 Consensus size: 27
57469177 GGGCAAAATT
* * * * *
57469187 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
57469214 ATAATTCCACCCTACAGGGGTATTTTT
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
57469241 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
**
57469268 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTG
*
57469295 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
* **
57469322 GTAATTTTA-CAAACTAGGGGTATTTTG
1 GTAATTCTACCCTAC-AGGGGTATTTTG
57469349 GTAATT
1 GTAATT
57469355 TTGTAAACCA
Statistics
Matches: 116, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 2 0.02
27 114 0.98
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTG
Found at i:57469341 original size:54 final size:53
Alignment explanation
Indices: 57469229--57469490 Score: 171
Period size: 54 Copynumber: 4.9 Consensus size: 53
57469219 TCCACCCTAC
* * * * **
57469229 AGGGGTATTTTTGTATTTCTACCCTACA-AGGGTATTTCGGTAATTCTACCCTAC-
1 AGGGGTATTTTAGTAATTCTACCC-A-ATAGGGTATTTTGGTAATTTTA-CAAACT
* *
57469283 AGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTAGTAATTCTACCCAATA-GGGTATTTTGGTAATTTTACAAACT
* * * *
57469337 AGGGGTATTTTGGTAATTTTGTAAACC-A-AGGGTATTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTAGTAA--TTCT-ACCCAATAGGGTATTTTGGTAATTTTACAAACT
* * * * * *
57469390 TGAGGGTATTTCAGTAATT-T-CACAAATCAAGGGTATTTTGATAATTTCACAAACC
1 AG-GGGTATTTTAGTAATTCTAC-CCAAT--AGGGTATTTTGGTAATTTTACAAACT
* * *
57469445 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGTATTTTGGTAATTTT
1 AGGGGTATTTTAGTAATTCTACCCAA-TAGGGTATTTTGGTAATTTT
57469491 GCTAATCGAG
Statistics
Matches: 165, Mismatches: 27, Indels: 33
0.73 0.12 0.15
Matches are distributed among these distances:
50 1 0.01
51 2 0.01
52 3 0.02
53 25 0.15
54 121 0.73
55 6 0.04
56 4 0.02
57 3 0.02
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGGTATTTTAGTAATTCTACCCAATAGGGTATTTTGGTAATTTTACAAACT
Found at i:57469343 original size:81 final size:81
Alignment explanation
Indices: 57469187--57469354 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
57469177 GGGCAAAATT
* *
57469187 GTAATTTTACCCCACAAGGGTATCTCGATAATTCCACCCTACAGGGGTATTTTTGTATTTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCGATAATTCCACCCTACAGGGGTATTTTGGTATTTCTACC
**
57469252 CTACAAGGGTATTTCG
66 AAACAAGGGTATTTCG
* * * * *
57469268 GTAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCCTATAGGGGTATTTTGGTAATTT-TA
1 GTAATTCTACCCCACAAGGGTATCTCGA-TAATTCCACCCTACAGGGGTATTTTGGT-ATTTCTA
* *
57469331 -CAAACTAGGGGTATTTTG
64 CCAAAC-AAGGGTATTTCG
57469349 GTAATT
1 GTAATT
57469355 TTGTAAACCA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
80 4 0.05
81 65 0.89
82 4 0.05
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGGGTATCTCGATAATTCCACCCTACAGGGGTATTTTGGTATTTCTACC
AAACAAGGGTATTTCG
Found at i:57469355 original size:27 final size:27
Alignment explanation
Indices: 57469309--57469490 Score: 208
Period size: 27 Copynumber: 6.8 Consensus size: 27
57469299 TTCTACCCTA
57469309 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
**
57469336 TAGGGGTATTTTGGTAATTTTGTAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
57469363 CAAGGGTATTTTGGTAATTTTAC-AAG
1 TAGGGGTATTTTGGTAATTTTACAAAC
* ** *
57469389 TTGAGGGTATTTCAGTAATTTCACAAA-
1 TAG-GGGTATTTTGGTAATTTTACAAAC
* * *
57469416 TCAAGGGTATTTTGATAATTTCACAAAC
1 T-AGGGGTATTTTGGTAATTTTACAAAC
*
57469444 CAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
57469471 TA-GGGTATTTTGGTAATTTT
1 TAGGGGTATTTTGGTAATTTT
57469491 GCTAATCGAG
Statistics
Matches: 128, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 20 0.16
27 106 0.83
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:57473629 original size:40 final size:40
Alignment explanation
Indices: 57473574--57473750 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
57473564 CGGATGATAA
*
57473574 CCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
57473614 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
57473654 CCGGGCTGAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
57473694 TCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
57473734 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
57473751 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 113 0.90
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:57474019 original size:22 final size:22
Alignment explanation
Indices: 57473977--57474020 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
57473967 AAAATGTGCA
* *
57473977 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
57473999 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
57474021 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:57481681 original size:40 final size:40
Alignment explanation
Indices: 57481623--57481799 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
57481613 CGGATGATAA
*
57481623 CCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
57481663 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
57481703 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
57481743 TCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
57481783 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
57481800 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 113 0.90
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:57482068 original size:22 final size:22
Alignment explanation
Indices: 57482026--57482069 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
57482016 AAAATGTGCA
* *
57482026 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
57482048 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
57482070 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:57488872 original size:41 final size:41
Alignment explanation
Indices: 57488815--57488893 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
57488805 CACTGTATGC
57488815 CCCAAACATGTCTTACACTAGCACTCATCTCAATGCCACGT
1 CCCAAACATGTCTTACACTAGCACTCATCTCAATGCCACGT
57488856 CCCAAACATGTCTTACACTAGCACTCATCTCAATGCCA
1 CCCAAACATGTCTTACACTAGCACTCATCTCAATGCCA
57488894 ATACCATGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.37, G:0.09, T:0.24
Consensus pattern (41 bp):
CCCAAACATGTCTTACACTAGCACTCATCTCAATGCCACGT
Found at i:57503811 original size:23 final size:24
Alignment explanation
Indices: 57503785--57503858 Score: 77
Period size: 23 Copynumber: 3.2 Consensus size: 24
57503775 AATCATTGGG
57503785 GCTTACCATTTCAGCTTGTAT-GA
1 GCTTACCATTTCAGCTTGTATAGA
**
57503808 GCTTA-C-TGTTCAGC-TCAATAGA
1 GCTTACCAT-TTCAGCTTGTATAGA
*
57503830 GCTTACCATTTCAGCTCGT-TAGA
1 GCTTACCATTTCAGCTTGTATAGA
57503853 GCTTAC
1 GCTTAC
57503859 TGTTCATCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
21 4 0.10
22 14 0.34
23 22 0.54
24 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (24 bp):
GCTTACCATTTCAGCTTGTATAGA
Found at i:57503821 original size:22 final size:23
Alignment explanation
Indices: 57503794--57503864 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 23
57503784 GGCTTACCAT
57503794 TTCAGCTTGTAT-GAGCTTACTG
1 TTCAGCTTGTATAGAGCTTACTG
**
57503816 TTCAGC-TCAATAGAGCTTACCAT-
1 TTCAGCTTGTATAGAGCTTA-C-TG
*
57503839 TTCAGCTCGT-TAGAGCTTACTG
1 TTCAGCTTGTATAGAGCTTACTG
57503861 TTCA
1 TTCA
57503865 TCAACTCAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
21 4 0.10
22 18 0.46
23 16 0.41
24 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (23 bp):
TTCAGCTTGTATAGAGCTTACTG
Found at i:57506364 original size:16 final size:17
Alignment explanation
Indices: 57506333--57506367 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
57506323 GTTGAGTTCT
57506333 AATAGCTAAAAGAATTA
1 AATAGCTAAAAGAATTA
*
57506350 AATAGCT-ATAGAATTA
1 AATAGCTAAAAGAATTA
57506366 AA
1 AA
57506368 AATTTGAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (17 bp):
AATAGCTAAAAGAATTA
Found at i:57513172 original size:43 final size:43
Alignment explanation
Indices: 57513071--57513174 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
57513061 GATTACTGAG
* * *
57513071 ATGTGATTACATGTAAAACCATGTCTGGGACATTAGCATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTAGCATCGAT
* * * * *
57513114 ATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTAGCATCGAT
*
57513157 ATGTGATAACATGTAAGA
1 ATGTGATTACATGTAAGA
57513175 ATATATCTGA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAGTAGCATCGAT
Found at i:57514467 original size:42 final size:42
Alignment explanation
Indices: 57514420--57514506 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
57514410 TTTCATATGA
* *
57514420 CCTGAGACACGGGCGTGTCAGGTGGCCGTGTGAGGCATACGG
1 CCTGAGACACGAGCGTGTCAGGTGGCCGTGTGAGGCACACGG
* *
57514462 CCTGAGACACGAGTGTGTTAGGTGGCCGTGTGAGGCACACGG
1 CCTGAGACACGAGCGTGTCAGGTGGCCGTGTGAGGCACACGG
57514504 CCT
1 CCT
57514507 ATTCACACAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.17, C:0.24, G:0.40, T:0.18
Consensus pattern (42 bp):
CCTGAGACACGAGCGTGTCAGGTGGCCGTGTGAGGCACACGG
Found at i:57519820 original size:40 final size:40
Alignment explanation
Indices: 57519741--57519983 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
57519731 CGAGATTTAA
* *
57519741 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
57519780 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57519820 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57519860 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
57519900 TCGAATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
57519940 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
57519980 CCGG
1 CCGG
57519984 TTATCATCCG
Statistics
Matches: 185, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 17 0.09
40 167 0.90
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57525635 original size:40 final size:40
Alignment explanation
Indices: 57525551--57525775 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
57525541 TTGAATGATG
* * * *
57525551 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
57525591 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57525631 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57525670 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57525710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57525751 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57525776 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57525797 original size:119 final size:119
Alignment explanation
Indices: 57525551--57525808 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
57525541 TTGAATGATG
* *
57525551 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *** *
57525616 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
57525670 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
57525733 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
57525790 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
57525809 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:57528420 original size:25 final size:25
Alignment explanation
Indices: 57528386--57528436 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
57528376 AGAGTGGGAA
57528386 ACCGGGTGCTACCACTGCTCGAGGT
1 ACCGGGTGCTACCACTGCTCGAGGT
57528411 ACCGGGTGCTACCACTGCTCGAGGT
1 ACCGGGTGCTACCACTGCTCGAGGT
57528436 A
1 A
57528437 GACCATCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (25 bp):
ACCGGGTGCTACCACTGCTCGAGGT
Found at i:57533583 original size:40 final size:40
Alignment explanation
Indices: 57533433--57533614 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
57533423 TTGAATGATG
* * * *
57533433 TCCGGGCTAAGTCCCGAAGGC-TTT-TGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
57533472 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
57533512 TCC-GGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57533549 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57533590 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57533615 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
37 18 0.15
38 15 0.12
39 34 0.28
40 50 0.41
41 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57533646 original size:79 final size:77
Alignment explanation
Indices: 57533484--57533647 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 77
57533474 CGGACTAAGA
* *
57533484 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
1 TCCGAAGGCATTTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTGTGCGAGTGACTAAA
*
57533549 TCCGGGTTAAGT
66 TCCGGGTTAAAT
* * *
57533561 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT-TGAACGAG-GA
1 TCCGAAGGCATTTGTGCGAGATACTAAT-ACC-GGCTAAG-CCCGAAGGCATTGTG--CGAGTGA
*
57533623 GCTATATCC-GGTTAAAT
61 -CTAAATCCGGGTTAAAT
57533640 TCCGAAGG
1 TCCGAAGG
57533648 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
76 2 0.03
77 25 0.34
78 8 0.11
79 27 0.37
80 11 0.15
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGAAGGCATTTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTGTGCGAGTGACTAAA
TCCGGGTTAAAT
Found at i:57543142 original size:40 final size:40
Alignment explanation
Indices: 57542979--57543163 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
57542969 TGGATGATAA
57542979 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTGACTAATT
* * *
57543020 CCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
* * * * *
57543060 CTGAGATAAGTTCCGAAGGCATTTGTGCGAGTTACTACA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-ATT
* *
57543100 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-T
* *
57543140 CCGGGCTAAGGCCCGATGGC-TTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57543164 CGAGTGGTTA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 93 0.74
41 23 0.18
42 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
Found at i:57551200 original size:40 final size:40
Alignment explanation
Indices: 57551111--57551299 Score: 292
Period size: 40 Copynumber: 4.7 Consensus size: 40
57551101 TGGATGATAA
* *
57551111 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCG--AGTTACTAATT
*
57551152 CCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
57551192 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
57551232 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA-T
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
*
57551272 CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC
57551300 TAGTGACCAT
Statistics
Matches: 140, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
40 112 0.80
41 24 0.17
42 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:57551327 original size:120 final size:119
Alignment explanation
Indices: 57551111--57551335 Score: 285
Period size: 120 Copynumber: 1.9 Consensus size: 119
57551101 TGGATGATAA
*
57551111 CCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAATTCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGC-AGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
* * * * *
57551176 TTGCGAGTTACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAATT
65 GTGCGAGTGACCAATTCCGGGCTAAGGCCCGAAGGC-TTTGTGCGAGTTATTAATT
* *
57551232 CCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGTTACTACA-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATT
* * *
57551295 TGTGCTAGTGACC-ATATCCGGGCTATGGCCCGATGGCTTTG
64 TGTGCGAGTGACCAAT-TCCGGGCTAAGGCCCGAAGGCTTTG
57551336 CGAGTGGTTA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
119 6 0.07
120 56 0.62
121 24 0.27
122 4 0.04
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTTGCGCAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTGACCAATTCCGGGCTAAGGCCCGAAGGCTTTGTGCGAGTTATTAATT
Found at i:57559327 original size:18 final size:18
Alignment explanation
Indices: 57559286--57559328 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
57559276 TAATAAGGCC
*
57559286 TCTTT-GGATTTTATTTT
1 TCTTTGGGATTTTAATTT
*
57559303 TAATTTGGGATTTTAATTT
1 T-CTTTGGGATTTTAATTT
57559322 TCTTTGG
1 TCTTTGG
57559329 ATATAACTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.05
18 8 0.38
19 12 0.57
ACGTcount: A:0.16, C:0.05, G:0.16, T:0.63
Consensus pattern (18 bp):
TCTTTGGGATTTTAATTT
Found at i:57564650 original size:29 final size:29
Alignment explanation
Indices: 57564615--57564681 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
57564605 AGTCATACTC
* * *
57564615 ATATGGCCCACTAGGTCCAGACCACCTGT
1 ATATGGCCCACTAGGCCCAAACCACATGT
* * *
57564644 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCACTAGGCCCAAACCACATGT
57564673 ATATGGCCC
1 ATATGGCCC
57564682 GTTAAGCCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAACCACATGT
Found at i:57572438 original size:29 final size:28
Alignment explanation
Indices: 57572406--57572461 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
57572396 ACTATATTTT
*
57572406 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATG
* *
57572435 GCCCGTTAGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
57572462 TCATGCTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATG
Found at i:57572699 original size:16 final size:16
Alignment explanation
Indices: 57572678--57572734 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
57572668 AAACTTTTAG
57572678 CTTTTCGGCATGTCGA
1 CTTTTCGGCATGTCGA
* *
57572694 CTTTTCTGCATGTTGA
1 CTTTTCGGCATGTCGA
* *
57572710 CTTTTCTGCATTTCGA
1 CTTTTCGGCATGTCGA
*
57572726 CATTTCGGC
1 CTTTTCGGC
57572735 TTTTGCCAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATGTCGA
Found at i:57573977 original size:16 final size:16
Alignment explanation
Indices: 57573956--57573988 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
57573946 GAAAATTCGA
57573956 GATTTCAAGATTTTTG
1 GATTTCAAGATTTTTG
*
57573972 GATTTCAGGATTTTTG
1 GATTTCAAGATTTTTG
57573988 G
1 G
57573989 GGCATTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (16 bp):
GATTTCAAGATTTTTG
Found at i:57576052 original size:43 final size:43
Alignment explanation
Indices: 57576004--57576151 Score: 149
Period size: 43 Copynumber: 3.4 Consensus size: 43
57575994 TACTGAGATA
*
57576004 TGATTACATGTAAGACCATGTCTGGTACATTGGCATTGTAT-TG
1 TGATTACATGTAAGACCATGTCTGG-ACATTGGCATCGTATATG
** * *
57576047 TGATTATGTGTAAGACCATGTTTGGGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCT-GGACATTGGCATCGTATATG
* * * * *
57576090 TGATTTCGTGTAAAACCTTGTCTAGGACAGTGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCT-GGACATTGGCATCGTATATG
*
57576133 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
57576152 ATTTGGGATA
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 81 0.96
44 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGACATTGGCATCGTATATG
Found at i:57584930 original size:27 final size:27
Alignment explanation
Indices: 57584900--57585242 Score: 241
Period size: 27 Copynumber: 12.7 Consensus size: 27
57584890 TTAATTTACC
* *
57584900 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
57584927 AAATTACTAAAAAACCGTTGGTTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
*
57584954 AAATTA-TCAAAATACCC-CTAGTTTGTA
1 AAATTACT-AAAATACCCTCGA-TTTGTA
** * *
57584981 AAATTACCGAAATACCC-CTAGTTTGTG
1 AAATTACTAAAATACCCTCGA-TTTGTA
* * *
57585008 GAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* *
57585035 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * **
57585062 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
57585089 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
** *
57585116 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* * *
57585143 AAATTATTGAAATACCCTC-AGTTTGCA
1 AAATTACTAAAATACCCTCGA-TTTGTA
* *
57585170 AAATTACTGAAATACCTTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
57585197 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* *
57585225 AAATTACCAAAGTACCCT
1 AAATTACTAAAATACCCT
57585243 GAATTTACAA
Statistics
Matches: 257, Mismatches: 49, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.01
27 235 0.91
28 20 0.08
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:57585040 original size:81 final size:80
Alignment explanation
Indices: 57584952--57585259 Score: 279
Period size: 81 Copynumber: 3.8 Consensus size: 80
57584942 CGTTGGTTTA
* ***
57584952 TAAAATTATCAAAATACCCCT-AGTTTGTAAAATTACCGAAATACCCCTAGTTTGTGGAATTACC
1 TAAAATTA-CGAAATACCCCTGA-TTTGTAAAATTACCGAAATACCCCTAGTTTGCAAAATTACC
57585016 AAAATACCCCTGATTTG
64 AAAATACCCCTGATTTG
* * * * * *
57585033 TGAAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACC
1 TAAAATTAC-GAAATACCCCT-GATTTGTAAAATTACCGAAATACCCCTAGTTTGCAAAATTACC
*
57585097 AAAATACCCCTGGTTTG
64 AAAATACCCCTGATTTG
* ** *
57585114 TAAAATTACCGAAATACCCCTGATTTGTGAAATTATTGAAATA-CCCTCAGTTTGCAAAATTACT
1 TAAAATTA-CGAAATACCCCTGATTTGTAAAATTACCGAAATACCCCT-AGTTTGCAAAATTACC
* *
57585178 GAAATA-CCTTCGATTTG
64 AAAATACCCCT-GATTTG
* * *
57585195 TAAAATTACTGAAATA-CCCTCGACTTGTAAAAATTACC-AAAGTA-CCCTGAATTTACAAAATT
1 TAAAATTAC-GAAATACCCCT-GATTTGT-AAAATTACCGAAA-TACCCCT-AGTTTGCAAAATT
57585257 ACC
61 ACC
57585260 GTTTTACCCT
Statistics
Matches: 184, Mismatches: 32, Indels: 21
0.78 0.14 0.09
Matches are distributed among these distances:
80 16 0.09
81 137 0.74
82 31 0.17
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (80 bp):
TAAAATTACGAAATACCCCTGATTTGTAAAATTACCGAAATACCCCTAGTTTGCAAAATTACCAA
AATACCCCTGATTTG
Found at i:57585294 original size:27 final size:27
Alignment explanation
Indices: 57584953--57585295 Score: 207
Period size: 27 Copynumber: 12.7 Consensus size: 27
57584943 GTTGGTTTAT
* * * *
57584953 AAAATTATCAAAATACCCCTAG-TTTGT
1 AAAATTACCGAAATA-CCCTCGATTTGC
* *
57584980 AAAATTACCGAAATACCC-CTAGTTTGT
1 AAAATTACCGAAATACCCTCGA-TTTGC
** * *
57585007 GGAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCGAAATACCCTC-GATTTGC
* * * *
57585034 GAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCGAAATACCCTCGATTTGC
* * * *
57585061 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCGAAATACCCTCGATTTGC
* * *
57585088 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCGAAATACCCTC-GATTTGC
*
57585115 AAAATTACCGAAATACCC-CTGATTTGT
1 AAAATTACCGAAATACCCTC-GATTTGC
* **
57585142 GAAATTATTGAAATACCCTC-AGTTTGC
1 AAAATTACCGAAATACCCTCGA-TTTGC
* * *
57585169 AAAATTACTGAAATACCTTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGC
* * *
57585196 AAAATTACTGAAATACCCTCGACTTGTA
1 AAAATTACCGAAATACCCTCGATTTG-C
*
57585224 AAAATTACC-AAAGTACCCT-GAATTTAC
1 AAAATTACCGAAA-TACCCTCG-ATTTGC
*** *
57585251 AAAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCGAAATACCCTCGATTTGC
**
57585278 AAAATTATTGAAATACCC
1 AAAATTACCGAAATACCC
57585296 CTCTAGGGTA
Statistics
Matches: 255, Mismatches: 48, Indels: 26
0.78 0.15 0.08
Matches are distributed among these distances:
26 4 0.02
27 229 0.90
28 22 0.09
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGATTTGC
Found at i:57585310 original size:27 final size:27
Alignment explanation
Indices: 57585287--57585430 Score: 198
Period size: 27 Copynumber: 5.3 Consensus size: 27
57585277 CAAAATTATT
* *
57585287 GAAATACCCCTCTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
57585314 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
57585341 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
57585368 GAAATACCCTTGTAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
57585395 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
57585422 GAGATACCC
1 GAAATACCC
57585431 TTATGGGGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:57585429 original size:81 final size:81
Alignment explanation
Indices: 57585278--57585448 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 81
57585268 CTCGATTTAC
** * *
57585278 AAAATTATTGAAATACCCCTCTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTGA
1 AAAATTACCGAAATACCCCTCTAGGGTAAAATTATCAAAATACCCCTGTAGGGTAGAATTACTGA
*
57585343 AATACCCCTGTAGGGT
66 AATACCCCTATAGGGT
* *
57585359 AAAATTACCGAAATACCCTTGTAGGGTAAAATTA-CTAAAATACCCCTGTAGGGTAGAATTA-TC
1 AAAATTACCGAAATACCCCTCTAGGGTAAAATTATC-AAAATACCCCTGTAGGGTAGAATTACT-
* * *
57585422 GAGATACCCTTATGGGGT
64 GAAATACCCCTATAGGGT
*
57585440 AAAACTACC
1 AAAATTACC
57585449 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.03
81 75 0.97
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTCTAGGGTAAAATTATCAAAATACCCCTGTAGGGTAGAATTACTGA
AATACCCCTATAGGGT
Found at i:57585432 original size:54 final size:54
Alignment explanation
Indices: 57585278--57585443 Score: 242
Period size: 54 Copynumber: 3.1 Consensus size: 54
57585268 CTCGATTTAC
* * *
57585278 AAAATTATTGAAATACCCCTCTAGGGTAGAATTATCGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * *
57585332 AGAATTACTGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * * *
57585386 AAAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTATGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
57585440 AAAA
1 AAAA
57585444 CTACCATTTT
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
Found at i:57588637 original size:43 final size:42
Alignment explanation
Indices: 57588590--57588729 Score: 163
Period size: 43 Copynumber: 3.3 Consensus size: 42
57588580 TATCCCATAT
** *
57588590 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAT-GATGCCAATGTCCCAGAC
* * * *
57588633 ATGGTCTTACACAAAATCATATAATGATGCCAATCTCCCAGAG
1 ATGGTCTTACACATAATCACAT-ATGATGCCAATGTCCCAGAC
* * *
57588676 ATGGTCTTACACATAATCACAAAATAATGCCAATGACCCAGAC
1 ATGGTCTTACACATAATCAC-ATATGATGCCAATGTCCCAGAC
57588719 ATGGTCTTACA
1 ATGGTCTTACA
57588730 TGGAATCACA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 78 0.96
44 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.26
Consensus pattern (42 bp):
ATGGTCTTACACATAATCACATATGATGCCAATGTCCCAGAC
Found at i:57588739 original size:43 final size:43
Alignment explanation
Indices: 57588615--57588729 Score: 167
Period size: 43 Copynumber: 2.7 Consensus size: 43
57588605 ATCACATATC
* * *
57588615 GATGCCAATGTCCCAGACATGGTCTTACACAAAATCATATAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAAT
* *
57588658 GATGCCAATCTCCCAGAGATGGTCTTACACATAATCACAAAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAAT
* *
57588701 AATGCCAATGACCCAGACATGGTCTTACA
1 GATGCCAATGTCCCAGACATGGTCTTACA
57588730 TGGAATCACA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAAT
Found at i:57596473 original size:37 final size:37
Alignment explanation
Indices: 57596414--57596522 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
57596404 AGCTCAGACG
* *
57596414 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
57596451 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
57596488 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
57596523 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:57596723 original size:48 final size:47
Alignment explanation
Indices: 57596669--57596779 Score: 139
Period size: 39 Copynumber: 2.5 Consensus size: 47
57596659 GCACATCGCC
*
57596669 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCG
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCA
57596717 TACATA-TT----T---CATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCA
57596756 TACATATTTCACATTAGCCATTCG
1 TACATATTTCACA-TAGCCATTCG
57596780 ACCTTATCAC
Statistics
Matches: 53, Mismatches: 1, Indels: 18
0.74 0.01 0.25
Matches are distributed among these distances:
39 35 0.66
40 2 0.04
42 1 0.02
45 1 0.02
47 2 0.04
48 12 0.23
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (47 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:57596732 original size:39 final size:39
Alignment explanation
Indices: 57596687--57596766 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
57596677 TCACACTAGC
*
57596687 CATTCGGCTTTACCACATATACATATCTCGTACATATTT
1 CATTCGGCTTTACCACATATACATATCTCATACATATTT
57596726 CATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CATTCGGCTTTACCACATATACATATCTCATACATATTT
57596765 CA
1 CA
57596767 CATTAGCCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (39 bp):
CATTCGGCTTTACCACATATACATATCTCATACATATTT
Found at i:57596859 original size:47 final size:47
Alignment explanation
Indices: 57596764--57596981 Score: 350
Period size: 47 Copynumber: 4.7 Consensus size: 47
57596754 CATACATATT
* * * *
57596764 TCACATTAGCCATTCGACCTTATCAC--ACATGCATGTTCGCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
57596809 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
57596856 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
57596903 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
57596950 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
57596982 ACACATAAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
45 23 0.14
47 137 0.86
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:57608947 original size:53 final size:54
Alignment explanation
Indices: 57608866--57609070 Score: 214
Period size: 53 Copynumber: 3.8 Consensus size: 54
57608856 TTTCCTTTTT
* * * *
57608866 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * *
57608919 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * * * * *
57608973 GTAAATCATCAATGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * * *
57609028 GAACTTATCAATGCCAAGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
57609071 TTTATCTTAC
Statistics
Matches: 125, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 45 0.36
54 36 0.29
55 44 0.35
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
Found at i:57609006 original size:55 final size:53
Alignment explanation
Indices: 57608877--57609065 Score: 209
Period size: 55 Copynumber: 3.5 Consensus size: 53
57608867 AACTTACCAT
* * * *
57608877 TGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
57608930 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAAATCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
57608985 TGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* *
57609039 TGCCAAGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
57609066 ATATCTTTAT
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 35 0.31
54 32 0.28
55 43 0.38
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:57609105 original size:47 final size:47
Alignment explanation
Indices: 57609052--57609173 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
57609042 CAAGCCTTGG
* *
57609052 CATGGTCTTACATGATATCTTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
57609099 CATGGTCTCACAT-AGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGA-TATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
57609146 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
57609174 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 1 0.01
47 67 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:57609979 original size:30 final size:31
Alignment explanation
Indices: 57609936--57609993 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
57609926 CTAACTCAAA
57609936 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
* ** *
57609967 CTTT-GCAGAATTATGATTTTTCCCCTA
1 CTTTGGCAAAATTACAATTTTGCCCCTA
57609994 GGCTCGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:57616573 original size:23 final size:25
Alignment explanation
Indices: 57616525--57616575 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
57616515 GTCATAAACT
*
57616525 TAACTTCATCATATAACTTATACCA
1 TAACTTCATCATATAACATATACCA
57616550 TAAC-TCATTCATA-AACATAT-CCA
1 TAACTTCA-TCATATAACATATACCA
57616573 TAA
1 TAA
57616576 TCAAGCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
24 9 0.38
25 9 0.38
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (25 bp):
TAACTTCATCATATAACATATACCA
Found at i:57617269 original size:44 final size:42
Alignment explanation
Indices: 57617120--57617289 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 42
57617110 CGAGAAGCAT
* *
57617120 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGCAATCAAAC--
1 ATACGATGCCAATGTCCCAGACATGGTCTTACA--CAA--AAACAG
* * * * *
57617164 AT-TGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAG
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACAAAAACAG
* *
57617205 ATACGATGTCGATGTCCCAGACATGGTCTTACACATAAAACAG
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACA-AAAACAG
* *
57617248 A-AGTCGATGCCAATGTCCCAGACGTGCTCTTACACAAAAACA
1 ATA--CGATGCCAATGTCCCAGACATGGTCTTACACAAAAACA
57617290 CATATCGGAT
Statistics
Matches: 102, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
39 3 0.03
41 4 0.04
42 27 0.26
43 38 0.37
44 30 0.29
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACAAAAACAG
Found at i:57622545 original size:38 final size:39
Alignment explanation
Indices: 57622494--57622766 Score: 157
Period size: 47 Copynumber: 6.5 Consensus size: 39
57622484 ATGAAAAAAT
57622494 GTGGTGCTAAGTGGATATACCATA-ATTATACATGTAAC
1 GTGGTGCTAAGTGGATATACCATACATTATACATGTAAC
57622532 GTGGTGCTAAGTGGATATACCACGATTACACATATGGATACATGTAAC
1 GTGGTGCTAAGTGGATATA-C-C-A-T--ACAT-T--ATACATGTAAC
* *
57622580 ATGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCAT-TAAC
1 GTGGTGCTAAGTGGATATACCA----TACAT-TA-T-A--CATGTAAC
* *
57622627 GTGGTGCTAAGTGGATATACC--ACGGTTAAACATGTAA-
1 GTGGTGCTAAGTGGATATACCATAC-ATTATACATGTAAC
*
57622664 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAAC
1 GTGGTGCTAAGTGGATATACCA----TACAT-TA-T-A--CATGTAAC
* * *
57622711 GTGGTGCCAAGTGGATATACC--ACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCATAC-ATTATACATGTAAC
57622749 GTGGTGCTAAGTGGATAT
1 GTGGTGCTAAGTGGATAT
57622767 GCCACGGTTA
Statistics
Matches: 188, Mismatches: 14, Indels: 66
0.70 0.05 0.25
Matches are distributed among these distances:
37 26 0.14
38 43 0.23
39 3 0.02
40 1 0.01
41 9 0.05
42 4 0.02
43 4 0.02
44 2 0.01
45 5 0.03
46 12 0.06
47 46 0.24
48 33 0.18
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (39 bp):
GTGGTGCTAAGTGGATATACCATACATTATACATGTAAC
Found at i:57622650 original size:47 final size:47
Alignment explanation
Indices: 57622528--57622738 Score: 246
Period size: 47 Copynumber: 4.7 Consensus size: 47
57622518 ATTATACATG
* * *
57622528 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATGGA-TACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGT-CAT
* *
57622575 GTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
*
57622623 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-T--G----
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
* *
57622661 TAA-GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
*
57622707 TAACGTGGTGCCAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
57622739 AACATGTAAC
Statistics
Matches: 139, Mismatches: 13, Indels: 23
0.79 0.07 0.13
Matches are distributed among these distances:
37 27 0.19
38 4 0.03
39 2 0.01
40 1 0.01
42 1 0.01
44 1 0.01
45 2 0.01
46 4 0.03
47 56 0.40
48 40 0.29
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
Found at i:57622676 original size:84 final size:85
Alignment explanation
Indices: 57622571--57622776 Score: 378
Period size: 84 Copynumber: 2.4 Consensus size: 85
57622561 ACATATGGAT
* *
57622571 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCCA
57622636 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
57622656 ACATGTAA-GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCCA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCCA
57622720 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
57622740 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
57622777 TACATGTTAA
Statistics
Matches: 117, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
84 81 0.69
85 36 0.31
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCCA
AGTGGATATACCACGGTTAA
Found at i:57622772 original size:38 final size:38
Alignment explanation
Indices: 57622707--57622783 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
57622697 ATTGATTCAT
57622707 TAACGTGGTGCCAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCCAAGTGGATATACCACGGTTAAACATG
* * *
57622745 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCCAAGTGGATATACCACGGTTAAACATG
57622783 T
1 T
57622784 TAATTTGCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (38 bp):
TAACGTGGTGCCAAGTGGATATACCACGGTTAAACATG
Found at i:57622807 original size:84 final size:83
Alignment explanation
Indices: 57622571--57622807 Score: 309
Period size: 84 Copynumber: 2.8 Consensus size: 83
57622561 ACATATGGAT
* * *
57622571 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATT-AACGTGGTGCT
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATT-AAT--TTCAAAGTGGTGCT
57622635 AAGTGGATATACCACGGTTAA
63 AAGTGGATATACCACGGTTAA
* *
57622656 ACATGTAA-GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGA-TTCATTAACGTGGTGCC
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAATTTCA--AA-GTGGTGCT
57622719 AAGTGGATATACCACGGTTAA
63 AAGTGGATATACCACGGTTAA
* * * *
57622740 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATACATGTTAATTTGCAAAGTGGCGCTAA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAATTT-CAAAGTGGTGCTAA
57622805 GTG
65 GTG
57622808 CGTATGCCAC
Statistics
Matches: 134, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
80 2 0.01
81 1 0.01
83 1 0.01
84 82 0.61
85 44 0.33
86 2 0.01
87 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (83 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAATTTCAAAGTGGTGCTAAG
TGGATATACCACGGTTAA
Found at i:57626080 original size:15 final size:15
Alignment explanation
Indices: 57626033--57626074 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
57626023 GCTGTAAATG
57626033 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
57626048 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
57626063 GGATTTCCTTAT
1 GGATTTCCTTAT
57626075 TCTGGACTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:57628483 original size:47 final size:47
Alignment explanation
Indices: 57628357--57628568 Score: 228
Period size: 47 Copynumber: 4.7 Consensus size: 47
57628347 GTTATACGTG
* * *
57628357 TAACGTGGTGTTAAGTGGATATACCACGATTACACATATTGA-TACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGT-CAT
*
57628404 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
* *
57628452 TAACGTGGTGCTAAGTGGATATACCATGGTTA-A-ACA-T--G----
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
* * * * * *
57628490 TAACATGATGCTAAGTGGGTATGCAACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
57628537 TAACGTGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
57628569 AACATGTAAT
Statistics
Matches: 134, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
38 26 0.19
39 1 0.01
40 2 0.01
41 1 0.01
42 1 0.01
44 1 0.01
45 2 0.01
46 1 0.01
47 57 0.43
48 41 0.31
49 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
Found at i:57628513 original size:85 final size:85
Alignment explanation
Indices: 57628400--57628606 Score: 342
Period size: 85 Copynumber: 2.4 Consensus size: 85
57628390 ACATATTGAT
57628400 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCTA
*
57628465 AGTGGATATACCATGGTTAA
66 AGTGGATATACCACGGTTAA
* * * * *
57628485 ACATGTAACATGATGCTAAGTGGGTATGCAACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCTA
57628550 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
* *
57628570 ACATGTAATGTGGTGCTAAGTGGATATGCCATGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
57628607 TACATGTTAA
Statistics
Matches: 110, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 110 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:57628592 original size:38 final size:38
Alignment explanation
Indices: 57628541--57628613 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
57628531 ATTCATTAAC
57628541 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
* * *
57628579 GTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
57628614 TAATTTGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
Found at i:57628809 original size:14 final size:14
Alignment explanation
Indices: 57628786--57628822 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
57628776 TACCGGAATA
57628786 TGAATATATGAGTTT
1 TGAAT-TATGAGTTT
57628801 TGAATTATGAGTTT
1 TGAATTATGAGTTT
57628815 TGAATTAT
1 TGAATTAT
57628823 CTTGAAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (14 bp):
TGAATTATGAGTTT
Found at i:57631349 original size:47 final size:50
Alignment explanation
Indices: 57631279--57631454 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 50
57631269 GGGTATAATA
*
57631279 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-GTC-TC-AAG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCGTCATCGAAG
* *
57631326 TTGATGCCATGTCCCAAACATGGTCTTACACT-GACT-ATCGTCATCGAGG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCATCGTCATCGAAG
* * * * * * *
57631375 CCGATGTCATGTCCCAAATATGGTCTTACACAAGCTC-TCGTATATCCATG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCGT-CATCGAAG
**
57631425 CCCATGCCATGTCCCAAACATGGTCTTACA
1 CTGATGCCATGTCCCAAACATGGTCTTACA
57631455 TCGGCTTACT
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
46 3 0.03
47 35 0.32
48 2 0.02
49 35 0.32
50 33 0.31
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (50 bp):
CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCGTCATCGAAG
Found at i:57631398 original size:49 final size:50
Alignment explanation
Indices: 57631281--57631454 Score: 171
Period size: 49 Copynumber: 3.6 Consensus size: 50
57631271 GTATAATACT
* * * **
57631281 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-GT-C-T-CAAGTT
1 GATGCCATGTCCCAAACATGGTCTTACACAAGCT-ATCGTACATCCAGGCC
* *
57631328 GATGCCATGTCCCAAACATGGTCTTACAC-TGACTATCGT-CATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACAAG-CTATCGTACATCCAGGCC
* * * * *
57631377 GATGTCATGTCCCAAATATGGTCTTACACAAGCTCTCGTATATCCATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACAAGCTATCGTACATCCAGGCC
*
57631427 CATGCCATGTCCCAAACATGGTCTTACA
1 GATGCCATGTCCCAAACATGGTCTTACA
57631455 TCGGCTTACT
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
46 3 0.03
47 33 0.31
48 1 0.01
49 35 0.33
50 33 0.31
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAAACATGGTCTTACACAAGCTATCGTACATCCAGGCC
Found at i:57631454 original size:99 final size:94
Alignment explanation
Indices: 57631329--57631551 Score: 243
Period size: 99 Copynumber: 2.3 Consensus size: 94
57631319 TCTCAAGTTG
*
57631329 ATGCCATGTCCCAAACATGGTCTTACACTGAC-TATCGTCATCGAGGCCGATGTCATGTCCCAAA
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTTA-CGTCA-CAAGGCCGATG-CATGTCCCAAA
* ** * *
57631393 TATGGTCTTACACAAGCTCTCGTATATCCATGCCC
63 CA-CATATTACACAAGCTCTCGTAT-T-AATGCCC
* * *
57631428 ATGCCATGTCCCAAACATGGTCTTACA-TCGGCTTACTTCACAAGGCCGATGCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACT-GACTTACGTCACAAGGCCGATGCATGTCCCAAACA
* * *
57631492 CATATTACACTAGCTCTCGTCTTAATGCCG
65 CATATTACACAAGCTCTCGTATTAATGCCC
* *
57631522 ATGCCATGTCCCAGACATGGTCTGACACTG
1 ATGCCATGTCCCAAACATGGTCTTACACTG
57631552 GCTCTCATAA
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
94 31 0.29
95 2 0.02
96 17 0.16
97 11 0.10
98 11 0.10
99 33 0.31
100 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (94 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACTTACGTCACAAGGCCGATGCATGTCCCAAACAC
ATATTACACAAGCTCTCGTATTAATGCCC
Found at i:57631569 original size:94 final size:95
Alignment explanation
Indices: 57631328--57631585 Score: 247
Period size: 94 Copynumber: 2.7 Consensus size: 95
57631318 GTCTCAAGTT
* * *
57631328 GATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTCATCGAGGCCGATGTCATGTCCCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCATCAT--AGGCCGATG-CATGTCCCAGA
* ** * *
57631393 TATGGTCTTACACAAGCTCTCGTATATCCATGCC
62 CATCATATTACACAAGCTCTCGTATATCAATGCC
* * *
57631427 CATGCCATGTCCCAAACATGGTCTTACA-TCGGCTTACTTCACAAGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACT-GGCTT-CATCA-TAGGCCGATGCATGTCCCAGAC
* *
57631491 A-CATATTACACTAGCTCTCGTCT-T-AATGCC
63 ATCATATTACACAAGCTCTCGTATATCAATGCC
* * * *
57631521 GATGCCATGTCCCAGACATGGTCTGACACTGGCTCTCATAATATGGCCGATG-ATGTCCTAGACA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCATCATA-GGCCGATGCATGTCCCAGACA
57631585 T
64 T
57631586 GTCTGACACT
Statistics
Matches: 133, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
93 12 0.09
94 45 0.34
95 3 0.02
96 17 0.13
97 11 0.08
98 11 0.08
99 34 0.26
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTTCATCATAGGCCGATGCATGTCCCAGACATC
ATATTACACAAGCTCTCGTATATCAATGCC
Found at i:57632287 original size:13 final size:13
Alignment explanation
Indices: 57632269--57632293 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57632259 CTAAAAGTAC
57632269 AAAAATCATCAAG
1 AAAAATCATCAAG
57632282 AAAAATCATCAA
1 AAAAATCATCAA
57632294 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:57639165 original size:47 final size:48
Alignment explanation
Indices: 57638916--57639191 Score: 235
Period size: 47 Copynumber: 5.8 Consensus size: 48
57638906 TATAATACCA
*
57638916 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-GTCTCAA-GTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCGTCTCAAGGCCG
* * * *
57638963 TTGCCATGTCCCAGAGATGGTCTTACACT-GACTATCGTCATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCGTC-TCAAGGCCG
* * * * * *
57639012 ACGCCATGTCCCAAACATGGTGTTACACTAGCTCTCGCATATC-CGTCCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCG--TCTCAAG-GCCG
* * * * *
57639062 GTGCCAGGTCCCAGACATGGTCTTACACTGGCT-TAC-TTTACGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGTCT-CAAGGCCG
* * *
57639110 ATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAGGCCG
* *
57639156 ATGCCATGTCCCAGATATGGTCTTACACTGGCTCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
57639192 ATAATGTGGT
Statistics
Matches: 180, Mismatches: 34, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
46 24 0.13
47 61 0.34
48 25 0.14
49 35 0.19
50 34 0.19
51 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAGGCCG
Found at i:57639207 original size:94 final size:94
Alignment explanation
Indices: 57638920--57639231 Score: 292
Period size: 94 Copynumber: 3.3 Consensus size: 94
57638910 ATACCAATGC
* *
57638920 CATGTCCCAGACATGGTCTTACACTAGCTCAT-GTCTCAA-G-TCGTTGCCATGTCCCAGAGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTC-TCGTCTCAATGCT-GATGCCATGTCCCAGACATG
* * * *
57638982 GTCTTACACTGACTATCGTCATCGAGGCCGACG
64 GTCTTACACTGGCT-TCATAAT-GAGGCCGATG
* * * ** * * * *
57639015 CCATGTCCCAAACATGGTGTTACACTAGCTCTCGCATATCCGTCCCGGTGCCAGGTCCCAGACAT
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCG--TCTCAATGCTGATGCCATGTCCCAGACAT
* * *
57639080 GGTCTTACACTGGCTTACTTTACGAGGCCGATG
63 GGTCTTACACTGGCTT-CATAATGAGGCCGATG
* *
57639113 CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCTGATGCCATGTCCCAGATATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCTGATGCCATGTCCCAGACATGGT
* **
57639177 CTTACACTGGCTCTCATAATGTGGTTGATG
66 CTTACACTGGCT-TCATAATGAGGCCGATG
*
57639207 CATGTCCCAGGCAT-GTCTTACACTA
1 CATGTCCCAGACATGGTCTTACACTA
57639232 ACTCACAATA
Statistics
Matches: 175, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
94 69 0.39
95 2 0.01
96 46 0.26
97 12 0.07
98 13 0.07
99 33 0.19
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCTGATGCCATGTCCCAGACATGGT
CTTACACTGGCTTCATAATGAGGCCGATG
Found at i:57639926 original size:13 final size:13
Alignment explanation
Indices: 57639908--57639932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57639898 CTAAAAGTAC
57639908 AAAAATCATCAAG
1 AAAAATCATCAAG
57639921 AAAAATCATCAA
1 AAAAATCATCAA
57639933 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:57642970 original size:24 final size:24
Alignment explanation
Indices: 57642926--57642986 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
57642916 CAGAGCTAAT
*
57642926 GAACAGTAAGCTCTATTGAGCTG-
1 GAACAGTAAGCTCTATCGAGCTGA
57642949 GAAACAGTAAGCTCTGA-CGAGCTGA
1 G-AACAGTAAGCTCT-ATCGAGCTGA
*
57642974 GAATAGTAAGCTC
1 GAACAGTAAGCTC
57642987 GAATGTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 1 0.03
24 30 0.91
25 2 0.06
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (24 bp):
GAACAGTAAGCTCTATCGAGCTGA
Found at i:57643942 original size:27 final size:27
Alignment explanation
Indices: 57643904--57644289 Score: 497
Period size: 27 Copynumber: 14.3 Consensus size: 27
57643894 AAATACCTCA
57643904 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
*
57643931 AAATACTCCTGTAAGGTAGAATTA-TCG
1 AAATACCCCTGTAAGGTAGAATTACT-G
*
57643958 AAATACCCCTAT-AGGTTAGAATTACTG
1 AAATACCCCTGTAAGG-TAGAATTACTG
* *
57643985 AAATACTCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
57644012 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
57644039 AAATACCCCTATAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
57644066 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
57644093 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
57644120 AAATACCCATGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
*
57644147 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
* * *
57644174 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
57644201 AAATACCCCTGTAGGGTAGAATTACTT
1 AAATACCCCTGTAAGGTAGAATTACTG
* * *
57644228 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* * *
57644255 AAATACCTCTGTAGGGTAAAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
*
57644282 AGATACCC
1 AAATACCC
57644290 TCGTGGGGTA
Statistics
Matches: 316, Mismatches: 39, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.01
27 308 0.97
28 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAAGGTAGAATTACTG
Found at i:57644667 original size:22 final size:22
Alignment explanation
Indices: 57644635--57644693 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
57644625 CCCGTTTTCG
*
57644635 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
57644657 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
57644679 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
57644694 ATGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:57644881 original size:27 final size:27
Alignment explanation
Indices: 57644851--57644986 Score: 152
Period size: 27 Copynumber: 5.0 Consensus size: 27
57644841 ATTCTGTTAA
* * *
57644851 GTGGCTTTGCTACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
*
57644878 GTGGCTCTGCCACAATATTCTGTTTCTG
1 GTGGCTCTGCCACAATA-TCTGATTCTG
*
57644906 GTGGCTATGCCACAAATATCTGA-TCTG
1 GTGGCTCTGCCAC-AATATCTGATTCTG
57644933 GTGGCTCTGCCACAATATCTG-TATCTG
1 GTGGCTCTGCCACAATATCTGAT-TCTG
* * *
57644960 GTGACTCTGTCACAATATTTG-TTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
57644986 G
1 G
57644987 CAGCCATGTT
Statistics
Matches: 95, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
26 13 0.14
27 53 0.56
28 25 0.26
29 4 0.04
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGATTCTG
Found at i:57645113 original size:6 final size:6
Alignment explanation
Indices: 57645104--57645219 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
57645094 TTGCATTCAC
* * *
57645104 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
57645154 ATTCTG ATTCTG ATTTTG ATTCTA ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
57645203 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
57645220 AGTTTTGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 4 0.05
6 70 0.82
7 8 0.09
8 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:57645135 original size:25 final size:25
Alignment explanation
Indices: 57645107--57645168 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
57645097 CATTCACATT
* *
57645107 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
57645132 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
57645157 CTGATTCTGATT
1 CTGATTCTGATT
57645169 TTGATTCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:57645142 original size:31 final size:31
Alignment explanation
Indices: 57645104--57645207 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
57645094 TTGCATTCAC
*
57645104 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
57645135 ATTCTGATTCTG-TCACCTAATT--CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACCTGATTCTG
* * *
57645166 ATTTTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
57645197 ATTCTGATTCT
1 ATTCTGATTCT
57645208 CATTTTGATT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
29 1 0.02
30 3 0.05
31 49 0.84
32 3 0.05
33 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:57645157 original size:19 final size:19
Alignment explanation
Indices: 57645132--57645202 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
57645122 TTACCTGATA
57645132 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* *
57645151 CTAATTCTGATTCTG--ATT
1 CTGATTCTGATTCTGTCA-C
* *
57645169 TTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
57645188 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
57645203 ATTCTCATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.66
20 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:57645167 original size:37 final size:37
Alignment explanation
Indices: 57645126--57645219 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
57645116 ATTCTGTTAC
*
57645126 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
57645163 CTGATTTTGATTCTAATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
57645200 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
57645220 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:57658216 original size:17 final size:17
Alignment explanation
Indices: 57658194--57658242 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
57658184 TTAACGTAAA
57658194 CTAAATAATAATAAATT
1 CTAAATAATAATAAATT
*
57658211 CTAAAT-ATACTAAA-T
1 CTAAATAATAATAAATT
*
57658226 ATAAATAATAACTAAAT
1 CTAAATAATAA-TAAAT
57658243 AATAACTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 6 0.23
16 10 0.38
17 10 0.38
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (17 bp):
CTAAATAATAATAAATT
Found at i:57658232 original size:26 final size:28
Alignment explanation
Indices: 57658192--57658262 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 28
57658182 ATTTAACGTA
*
57658192 AACTAAATAATAATAAAT-TCTAAAT-AT
1 AACTAAATAA-AATAAATAACTAAATAAT
57658219 -ACTAAATATAAAT-AATAACTAAATAAT
1 AACTAAATA-AAATAAATAACTAAATAAT
57658246 AACTAAATAGAAATAAA
1 AACTAAATA-AAATAAA
57658263 AATATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 3 0.08
26 17 0.46
27 3 0.08
28 12 0.32
29 2 0.05
ACGTcount: A:0.63, C:0.07, G:0.01, T:0.28
Consensus pattern (28 bp):
AACTAAATAAAATAAATAACTAAATAAT
Found at i:57658243 original size:17 final size:17
Alignment explanation
Indices: 57658195--57658243 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
57658185 TAACGTAAAC
*
57658195 TAAATAATAA-TAAATTC
1 TAAATAATAACTAAA-TA
57658212 TAAAT-AT-ACTAAATA
1 TAAATAATAACTAAATA
57658227 TAAATAATAACTAAATA
1 TAAATAATAACTAAATA
57658244 ATAACTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 7 0.25
16 8 0.29
17 13 0.46
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAATAATAACTAAATA
Found at i:57658251 original size:28 final size:28
Alignment explanation
Indices: 57658192--57658312 Score: 85
Period size: 28 Copynumber: 4.4 Consensus size: 28
57658182 ATTTAACGTA
* *
57658192 AACTAAATAATAATAA-ATTCTAAAT-AT
1 AACTAAATAAAAATAATA-ACTAAATAAT
*
57658219 -ACTAAATATAAATAATAACTAAATAAT
1 AACTAAATAAAAATAATAACTAAATAAT
* *
57658246 AACTAAATAGAAATAA-AAATATATATAAT
1 AACTAAATAAAAATAATAACTA-A-ATAAT
*
57658275 AA-TATATAAAAATAATATA-TAAATAGAT
1 AACTAAATAAAAATAATA-ACTAAATA-AT
57658303 AA-TATAATAA
1 AACTA-AATAA
57658313 TAGATAGAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
26 19 0.25
27 10 0.13
28 33 0.43
29 14 0.18
30 1 0.01
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (28 bp):
AACTAAATAAAAATAATAACTAAATAAT
Found at i:57658260 original size:43 final size:43
Alignment explanation
Indices: 57658192--57658338 Score: 122
Period size: 43 Copynumber: 3.3 Consensus size: 43
57658182 ATTTAACGTA
**
57658192 AACTAAATAATAATAAATTCTAAATATACTAA-ATATA-AATAAT
1 AACTAAATAATAATAAA-TAGAAATATA-TAATATATAGAATAAT
* *
57658235 AACTAAATAATAACTAAATAGAAATA-AAAATATATATAATAAT
1 AACTAAATAATAA-TAAATAGAAATATATAATATATAGAATAAT
*
57658278 ATA-TAAAAATAATATATAAATAGATAATATAATAATAGATAGAATAAT
1 A-ACT--AAATAATA-ATAAATAGA-AATAT-ATAATATATAGAATAAT
*
57658326 AAAATAAATAATA
1 -AACTAAATAATA
57658339 TAGAAATATA
Statistics
Matches: 86, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
41 2 0.02
42 6 0.07
43 27 0.31
44 5 0.06
45 16 0.19
46 5 0.06
47 8 0.09
48 15 0.17
49 2 0.02
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (43 bp):
AACTAAATAATAATAAATAGAAATATATAATATATAGAATAAT
Found at i:57658275 original size:21 final size:24
Alignment explanation
Indices: 57658230--57658346 Score: 97
Period size: 23 Copynumber: 5.0 Consensus size: 24
57658220 CTAAATATAA
57658230 ATAATAACTAAATAATA-ACTAAATAG
1 ATAATAA--AAATAATATA-TAAATAG
57658256 A-AATAAAAAT-ATATAT-AATA-
1 ATAATAAAAATAATATATAAATAG
57658276 ATATATAAAAATAATATATAAATAG
1 ATA-ATAAAAATAATATATAAATAG
* *
57658301 ATAAT-ATAATAATAGATAGAATA-
1 ATAATAAAAATAATATATA-AATAG
*
57658324 ATAA-AATAAATAATATAGAAATA
1 ATAATAA-AAATAATATATAAATA
57658347 TAGATTTATA
Statistics
Matches: 77, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
20 1 0.01
21 5 0.06
22 12 0.16
23 31 0.40
24 19 0.25
25 8 0.10
26 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (24 bp):
ATAATAAAAATAATATATAAATAG
Found at i:57658290 original size:13 final size:13
Alignment explanation
Indices: 57658263--57658308 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
57658253 TAGAAATAAA
*
57658263 AATATAT-ATAAT
1 AATATATAAAAAT
57658275 AATATATAAAAAT
1 AATATATAAAAAT
57658288 AATATATAAATAGAT
1 AATATATAAA-A-AT
57658303 AATATA
1 AATATA
57658309 ATAATAGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 7 0.23
13 14 0.47
14 1 0.03
15 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (13 bp):
AATATATAAAAAT
Found at i:57658305 original size:15 final size:14
Alignment explanation
Indices: 57658224--57658388 Score: 84
Period size: 14 Copynumber: 11.9 Consensus size: 14
57658214 AATATACTAA
57658224 ATATAAATAATAACT
1 ATATAAATAATAA-T
*
57658239 AAAT-AATAACTAA-
1 ATATAAATAA-TAAT
*
57658252 ATAGAAATAA-AA-
1 ATATAAATAATAAT
*
57658264 ATATATATAATAAT
1 ATATAAATAATAAT
57658278 ATATAAA-AATAAT
1 ATATAAATAATAAT
57658291 ATATAAATAGATAAT
1 ATATAAATA-ATAAT
57658306 ATA-ATAATAGATAGA-
1 ATATA-AATA-ATA-AT
57658321 ATAATAAAATAAATAAT
1 AT-AT-AAAT-AATAAT
*
57658338 ATAGAAAT-ATAGAT
1 ATATAAATAATA-AT
* *
57658352 TTATAAATCGA-AAT
1 ATATAAAT-AATAAT
*
57658366 ATATTAAT-ATAA-
1 ATATAAATAATAAT
57658378 ATAT-AATAATA
1 ATATAAATAATA
57658389 TAAATATTAT
Statistics
Matches: 121, Mismatches: 11, Indels: 39
0.71 0.06 0.23
Matches are distributed among these distances:
11 3 0.02
12 18 0.15
13 22 0.18
14 34 0.28
15 29 0.24
16 5 0.04
17 8 0.07
18 2 0.02
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (14 bp):
ATATAAATAATAAT
Found at i:57658309 original size:20 final size:20
Alignment explanation
Indices: 57658286--57658395 Score: 84
Period size: 20 Copynumber: 5.5 Consensus size: 20
57658276 ATATATAAAA
57658286 ATAATATATAAATAGATAAT
1 ATAATATATAAATAGATAAT
*
57658306 ATAATA-ATAGATAGAATAAT
1 ATAATATATAAATAG-ATAAT
* *
57658326 AAAATAAATAATATAGA-AAT
1 ATAATATATAA-ATAGATAAT
* *
57658346 ATAGATTTATAAATCGA-AAT
1 ATA-ATATATAAATAGATAAT
* *
57658366 ATATTAATATAAATATAATAAT
1 ATAAT-ATATAAATA-GATAAT
57658388 ATAA-ATAT
1 ATAATATAT
57658396 TATTAATTAC
Statistics
Matches: 71, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
19 8 0.11
20 42 0.59
21 11 0.15
22 10 0.14
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (20 bp):
ATAATATATAAATAGATAAT
Found at i:57658323 original size:12 final size:10
Alignment explanation
Indices: 57658195--57658338 Score: 79
Period size: 11 Copynumber: 13.9 Consensus size: 10
57658185 TAACGTAAAC
57658195 TAAATAATAA
1 TAAATAATAA
**
57658205 TAAATTCTAAA
1 TAAATAAT-AA
*
57658216 TATACTAA-ATA
1 TA-AATAATA-A
57658227 TAAATAATAA
1 TAAATAATAA
57658237 CTAAATAATAA
1 -TAAATAATAA
57658248 CTAAATAGA-AA
1 -TAAATA-ATAA
57658259 TAAA-AAT-A
1 TAAATAATAA
*
57658267 TATATAATAA
1 TAAATAATAA
57658277 T--AT-ATAA
1 TAAATAATAA
57658284 -AAATAATATA
1 TAAATAATA-A
57658294 TAAATAGATAA
1 TAAATA-ATAA
57658305 TATAATAATAGA
1 TA-AATAATA-A
57658317 TAGAATAATAAAA
1 TA-AATAAT--AA
57658330 TAAATAATA
1 TAAATAATA
57658339 TAGAAATATA
Statistics
Matches: 107, Mismatches: 8, Indels: 38
0.70 0.05 0.25
Matches are distributed among these distances:
7 4 0.04
8 9 0.08
9 7 0.07
10 20 0.19
11 38 0.36
12 25 0.23
13 3 0.03
14 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (10 bp):
TAAATAATAA
Found at i:57658346 original size:23 final size:24
Alignment explanation
Indices: 57658251--57658350 Score: 70
Period size: 24 Copynumber: 4.2 Consensus size: 24
57658241 ATAATAACTA
*
57658251 AATAGAAATAAA-AATATATATAAT
1 AATAGAAATAAATAATATAGA-AAT
* *
57658275 AATATATAA-AAATAATATATAAAT
1 AATAGA-AATAAATAATATAGAAAT
*
57658299 AGATA-ATAT-AATAATAGATAG-AAT
1 A-ATAGAAATAAATAAT--ATAGAAAT
57658323 AATA-AAATAAATAATATAGAAAT
1 AATAGAAATAAATAATATAGAAAT
57658346 -ATAGA
1 AATAGA
57658351 TTTATAAATC
Statistics
Matches: 63, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
22 7 0.11
23 17 0.27
24 23 0.37
25 16 0.25
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (24 bp):
AATAGAAATAAATAATATAGAAAT
Found at i:57658347 original size:40 final size:37
Alignment explanation
Indices: 57658222--57658348 Score: 112
Period size: 40 Copynumber: 3.2 Consensus size: 37
57658212 TAAATATACT
* *
57658222 AAATATAAATAATAACTAAATAAT-AACTAAATAGAAATAA
1 AAATAT-AATAATAA-TAAATAATAAAATAAAT--AAATAG
* * *
57658262 AAATATATATAATAATATATAAAAATAATATATAAATAG
1 AAATATA-ATAATAATAAATAATAA-AATAAATAAATAG
57658301 ATAATATAATAATAGATAGAATAATAAAATAAATAATATAG
1 A-AATATAATAATA-ATA-AATAATAAAATAAATAA-ATAG
57658342 AAATATA
1 AAATATA
57658349 GATTTATAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
39 19 0.26
40 37 0.51
41 16 0.22
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (37 bp):
AAATATAATAATAATAAATAATAAAATAAATAAATAG
Found at i:57658381 original size:14 final size:14
Alignment explanation
Indices: 57658362--57658402 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
57658352 TTATAAATCG
57658362 AAATATATTAATAT
1 AAATATATTAATAT
*
57658376 AAATATAATAATAT
1 AAATATATTAATAT
57658390 AAATATTATTAAT
1 AAATA-TATTAAT
57658403 TACTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:57673227 original size:40 final size:40
Alignment explanation
Indices: 57673182--57673299 Score: 227
Period size: 40 Copynumber: 3.0 Consensus size: 40
57673172 ATCTATGTCC
*
57673182 TATGTTATTGTCATTTTAAATGTGAACAAATTTTTAATCT
1 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAATCT
57673222 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAATCT
1 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAATCT
57673262 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAAT
1 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAAT
57673300 TTTTTAATTA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.48
Consensus pattern (40 bp):
TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAATCT
Found at i:57673324 original size:45 final size:45
Alignment explanation
Indices: 57673272--57673362 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
57673262 TATGTTATTG
* *
57673272 TCATTTTAAACGTGAACAAATTTTTAATTTTTTAATTATCTTTTA
1 TCATTTTAAACGTGAACAAATTTTTAAATTTTAAATTATCTTTTA
* *
57673317 TCATTTTAAATGTGGACAAATTTTTAAATTTTAAATTATCTTTTA
1 TCATTTTAAACGTGAACAAATTTTTAAATTTTAAATTATCTTTTA
57673362 T
1 T
57673363 GAAAAACAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (45 bp):
TCATTTTAAACGTGAACAAATTTTTAAATTTTAAATTATCTTTTA
Found at i:57681050 original size:3 final size:3
Alignment explanation
Indices: 57681042--57681076 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
57681032 ATAACCTGGA
*
57681042 TTC TTC TTC TTC TTC TTC TTC TTC TCC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
57681077 TTGCAGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:57682236 original size:20 final size:20
Alignment explanation
Indices: 57682206--57682243 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
57682196 ACTCCCTCAA
57682206 CCCCTAGAACTTTTTACTTTC
1 CCCCTAGAAC-TTTTACTTTC
57682227 CCCCTA-AACTTTTACTT
1 CCCCTAGAACTTTTACTT
57682244 CTCACATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.21, C:0.34, G:0.03, T:0.42
Consensus pattern (20 bp):
CCCCTAGAACTTTTACTTTC
Found at i:57696501 original size:79 final size:81
Alignment explanation
Indices: 57696392--57696574 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
57696382 TACTCGTTCA
* *
57696392 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
57696455 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
57696472 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
57696535 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
57696551 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57696575 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:57696574 original size:40 final size:40
Alignment explanation
Indices: 57696371--57696574 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
57696361 CGGAATTTAA
** *
57696371 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57696411 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57696451 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57696490 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57696530 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57696570 CCGGA
1 CCGGA
57696575 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57704542 original size:40 final size:40
Alignment explanation
Indices: 57704455--57704642 Score: 213
Period size: 41 Copynumber: 4.7 Consensus size: 40
57704445 GCTACTCGTT
*
57704455 CAAATGCCTTCGGGACATAGCCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATT-TAGTAACTCGCA
*
57704496 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
57704536 CCAATGCCTTTCGGG-CTTAGCCCGGTAGTTAGTAACTCGCA
1 CAAATGCC-TTCGGGACTTAGCCCGG-ATTTAGTAACTCGCA
* * * * *
57704577 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
57704618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57704643 CATCATTCGA
Statistics
Matches: 127, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
39 2 0.02
40 55 0.43
41 70 0.55
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57704626 original size:81 final size:81
Alignment explanation
Indices: 57704455--57704641 Score: 213
Period size: 81 Copynumber: 2.3 Consensus size: 81
57704445 GCTACTCGTT
*
57704455 CAAATGCCTTCGGGACATAGCCCTGGT--TATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CAAA-GCCTTCGGGACTTAGCCC-GGTAGT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACC
* *
57704518 CGGATTTAGTAACTCGCAC
63 CGGATATAGTAACTAGCAC
* **
57704537 CAATGCCTTTCGGG-CTTAGCCCGGTAGTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAAGCC-TTCGGGACTTAGCCCGGTAGTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
57704600 GGATATGGTCACTTAGCA-
64 GGATATAGTAAC-TAGCAC
57704618 CAAAGCCTTCGGGACTTAGCCCGG
1 CAAAGCCTTCGGGACTTAGCCCGG
57704642 ACATCATTCG
Statistics
Matches: 90, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
80 12 0.13
81 64 0.71
82 14 0.16
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGTAGTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:57711260 original size:26 final size:26
Alignment explanation
Indices: 57711225--57711275 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
57711215 AATGTGAAAG
*
57711225 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
57711251 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
57711276 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:57711287 original size:103 final size:103
Alignment explanation
Indices: 57711147--57711368 Score: 374
Period size: 103 Copynumber: 2.2 Consensus size: 103
57711137 TGTATATAAA
** * *
57711147 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
57711211 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
57711250 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
57711315 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
57711353 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
57711369 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 111 0.99
104 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:57711418 original size:69 final size:71
Alignment explanation
Indices: 57711288--57711437 Score: 232
Period size: 71 Copynumber: 2.1 Consensus size: 71
57711278 TCATTGGTGG
* *
57711288 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAA-GTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
57711352 GAGGGGT
65 GAGGGGT
***
57711359 TGCTAAGTGCGATATCCATTGTATATTTGAAA-TGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
57711423 AGGGGT
66 AGGGGT
57711429 TGCTAAGTG
1 TGCTAAGTG
57711438 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
69 25 0.34
70 20 0.27
71 28 0.38
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGT
Found at i:57711442 original size:27 final size:27
Alignment explanation
Indices: 57711396--57711447 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
57711386 TGAAATGAAA
* *
57711396 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGATGATTCCCCCG
57711423 AGGGGTTGCTAAGTGATGATTCCCC
1 AGGGGTTGCTAAGTGATGATTCCCC
57711448 GATTCAGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGATGATTCCCCCG
Found at i:57716577 original size:13 final size:13
Alignment explanation
Indices: 57716561--57716586 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57716551 CGGAGAGCCA
57716561 CAAAGGAACGAAG
1 CAAAGGAACGAAG
57716574 CAAAGGAACGAAG
1 CAAAGGAACGAAG
57716587 GAGCCCTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.31, T:0.00
Consensus pattern (13 bp):
CAAAGGAACGAAG
Found at i:57723661 original size:27 final size:27
Alignment explanation
Indices: 57723604--57723781 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
57723594 TAGTTCAACA
* ** *
57723604 AATTACCAAAATGCCCCTG-ATTTGTAA
1 AATTACCAAAATACCCCTGTA-GGGTAG
* *
57723631 AATTACTAAAATACCCCTGTATGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
57723658 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
57723685 -ATCTACTGAAATACCCCTGTAGGGTAG
1 AAT-TACCAAAATACCCCTGTAGGGTAG
* * *
57723712 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCAAAATACCCCTGTAGGGTAG
57723739 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
57723766 AATTACCGAGATACCC
1 AATTACCAAAATACCC
57723782 TTGTGGGATG
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 125 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:57723697 original size:54 final size:54
Alignment explanation
Indices: 57723631--57723798 Score: 250
Period size: 54 Copynumber: 3.1 Consensus size: 54
57723621 TGATTTGTAA
* *
57723631 AATTACTAAAATACCCCTGTATGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAG
*
57723685 -ATCTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAG
1 AAT-TACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAG
* * *
57723739 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGAT-G
1 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAG
57723792 AAATTAC
1 -AATTAC
57723799 CATTTTGCCC
Statistics
Matches: 104, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
53 3 0.03
54 99 0.95
55 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAG
Found at i:57723796 original size:27 final size:27
Alignment explanation
Indices: 57723655--57723799 Score: 156
Period size: 27 Copynumber: 5.4 Consensus size: 27
57723645 CCCTGTATGG
57723655 TAGAATTACCGAAATACCCTTGTAGGG-
1 TAGAATTACCGAAATACCCTTGT-GGGA
* *
57723682 TAG-ATCTACTGAAATACCCCTGTAGGG-
1 TAGAAT-TACCGAAATACCCTTGT-GGGA
*
57723709 TAGAATTACCGAAATACCCTTGTAGGA
1 TAGAATTACCGAAATACCCTTGTGGGA
* *
57723736 TAGAATTACCAAAATACCCCTGTAGGG-
1 TAGAATTACCGAAATACCCTTGT-GGGA
*
57723763 TAGAATTACCGAGATACCCTTGTGGGA
1 TAGAATTACCGAAATACCCTTGTGGGA
57723790 T-GAAATTACC
1 TAG-AATTACC
57723800 ATTTTGCCCC
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
26 8 0.08
27 89 0.88
28 4 0.04
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCTTGTGGGA
Found at i:57723797 original size:81 final size:80
Alignment explanation
Indices: 57723630--57723800 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 80
57723620 CTGATTTGTA
* * * *
57723630 AAATTACTAAAATACCCCTGTATGGTAGAATTACCGAAATACCCTTGTAGGGTAGATCTACTGAA
1 AAATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGATCTACCGAA
57723695 ATACCCCTGTAGGGT
66 ATACCCCTGTAGGGT
* *
57723710 AGAATTACCGAAATACCCTTGTA-GGATAGAATTACCAAAATACCCCTGTAGGGTAGAAT-TACC
1 A-AATTACCAAAATACCCCTGTATGG-TAGAATTACCAAAATACCCCTGTAGGGTAG-ATCTACC
* *
57723773 GAGATACCCTTGT-GGGAT
63 GAAATACCCCTGTAGGG-T
57723791 GAAATTACCA
1 -AAATTACCA
57723801 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
80 6 0.08
81 68 0.88
82 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGATCTACCGAA
ATACCCCTGTAGGGT
Done.