Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 172 of 311
Found at i:58472861 original size:53 final size:54
Alignment explanation
Indices: 58472796--58472988 Score: 257
Period size: 53 Copynumber: 3.6 Consensus size: 54
58472786 GGGGCAAAAT
* * * *
58472796 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
58472849 GGTAATTCTACCCTACAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
58472903 GGTAATTCT-CCCTATAGGGGTATTTCGGTAATTCT-CCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** *
58472955 GACATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
58472989 TTGTAAATCG
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
52 22 0.18
53 60 0.50
54 39 0.32
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:58473072 original size:27 final size:27
Alignment explanation
Indices: 58473042--58473157 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
58473032 CTTTGGTAAC
*
58473042 TTTACAAGTCGAGGGTATTTCAATAAT
1 TTTACAAGTCGAGGGTATTTTAATAAT
* *
58473069 TTTACAGGTCGAGGGTATTTTAATAGT
1 TTTACAAGTCGAGGGTATTTTAATAAT
* **
58473096 TTTCACAAATC-AGGGGTATTTTGGTAAT
1 TTT-ACAAGTCGA-GGGTATTTTAATAAT
* * *
58473124 TTTACAA-ACTAGGGGTATTTTAGTAAT
1 TTTACAAGTCGA-GGGTATTTTAATAAT
*
58473151 GTTACAA
1 TTTACAA
58473158 ACCAGGAGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
26 1 0.01
27 54 0.72
28 20 0.27
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
TTTACAAGTCGAGGGTATTTTAATAAT
Found at i:58473187 original size:28 final size:27
Alignment explanation
Indices: 58473081--58473195 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
58473071 TACAGGTCGA
** * *
58473081 GGGTATTTTAATAGTTTTCACAAATCAG
1 GGGTATTTTGGTAATTTT-ACAAACCAG
*
58473109 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
58473136 GGGTATTTTAGTAATGTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
58473163 GAGTATTTTGTGTAATTTTGTAAACCAA
1 GGGTATTTTG-GTAATTTTACAAACCAG
58473191 GGGTA
1 GGGTA
58473196 AAACGATAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 39 0.55
28 32 0.45
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:58473195 original size:55 final size:55
Alignment explanation
Indices: 58473080--58473195 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 55
58473070 TTACAGGTCG
* * * * *
58473080 AGGGTATTTTAATAGTTTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAATAATGTTCACAAACCAGGAGTATTTTGGTAATTTTACAAACCA
* * **
58473135 GGGGTATTTTAGTAATGTT-ACAAACCAGGAGTATTTTGTGTAATTTTGTAAACCA
1 AGGGTATTTTAATAATGTTCACAAACCAGGAGTATTTTG-GTAATTTTACAAACCA
58473190 AGGGTA
1 AGGGTA
58473196 AAACGATAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 17 0.34
55 33 0.66
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (55 bp):
AGGGTATTTTAATAATGTTCACAAACCAGGAGTATTTTGGTAATTTTACAAACCA
Found at i:58473211 original size:27 final size:27
Alignment explanation
Indices: 58473175--58473384 Score: 170
Period size: 27 Copynumber: 7.8 Consensus size: 27
58473165 GTATTTTGTG
* *
58473175 TAATTTTGTAAACCAAGGGTAAAACGA
1 TAATTTTGTAAATCGAGGGTAAAACGA
* * *
58473202 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGA
* * *
58473229 TAATTTTATAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGA
* * * *
58473256 TAATTTTATAAATTGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGA
* *
58473283 TAATTTTATAAATTGAGGGTAAAAC-A
1 TAATTTTGTAAATCGAGGGTAAAACGA
* * * * * *
58473309 GTAATTCTATAAATTGAGGGAAAAATGG
1 -TAATTTTGTAAATCGAGGGTAAAACGA
* * *
58473337 TAATTCTATAAATCGAGAGTAAAACGA
1 TAATTTTGTAAATCGAGGGTAAAACGA
* * *
58473364 TAATTCTATAAATCGGGGGTA
1 TAATTTTGTAAATCGAGGGTA
58473385 CTTTGATAAT
Statistics
Matches: 160, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAACGA
Found at i:58473277 original size:81 final size:81
Alignment explanation
Indices: 58473190--58473384 Score: 264
Period size: 81 Copynumber: 2.4 Consensus size: 81
58473180 TTGTAAACCA
* ** * *
58473190 AGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATG
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGAAAAATG
* *
58473255 GTAATTTTATAAATTG
66 GTAATTCTATAAATCG
* * * * *
58473271 AGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACAGTAATTCTATAAATTGAGGGAAAAATG
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGAAAAATG
58473336 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
* *
58473352 AGAGTAAAACGATAATTCTATAAATCGGGGGTA
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTA
58473385 CTTTGATAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (81 bp):
AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGAAAAATG
GTAATTCTATAAATCG
Found at i:58473395 original size:54 final size:54
Alignment explanation
Indices: 58473174--58473384 Score: 280
Period size: 54 Copynumber: 3.9 Consensus size: 54
58473164 AGTATTTTGT
* * * *
58473174 GTAATTTTGTAAACCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* * * *
58473228 GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* * *
58473282 GTAATTTTATAAATTGAGGGTAAAAC-AGTAATTCTATAAATTGAGGGAAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACGA-TAATTCTATAAATCGAGGGTAAAATG
* * *
58473336 GTAATTCTATAAATCGAGAGTAAAACGATAATTCTATAAATCGGGGGTA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
58473385 CTTTGATAAT
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
54 135 0.99
55 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
Found at i:58474036 original size:27 final size:27
Alignment explanation
Indices: 58473997--58474301 Score: 378
Period size: 27 Copynumber: 11.3 Consensus size: 27
58473987 TACCGCACAA
* * * * *
58473997 GGTATCTCAGTAATTGTACCATATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
58474024 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58474051 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
58474078 GGTATTTTGGTAATTCTACCATATATG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
58474105 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58474132 GGTATTTTGGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58474159 GGTATTTTGGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
58474186 GGTATTTCGGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58474213 GGTATTTCGGTAATTATACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58474240 GGTATTTCAGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
58474267 GATATTTC-GTCATTTCTACCCTACAAG
1 GGTATTTCGGT-AATTCTACCCTACAGG
58474294 GGTATTTC
1 GGTATTTC
58474302 AATAATTTTG
Statistics
Matches: 244, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 242 0.99
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:58474378 original size:27 final size:27
Alignment explanation
Indices: 58474348--58474450 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 27
58474338 GTAAATCAAT
* *
58474348 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTATTTTAGTAATTTTACAAGTCGAA
* *
58474375 GGTATTTTAATAATTTTACAGGTCG-A
1 GGTATTTTAGTAATTTTACAAGTCGAA
* * *
58474401 GGATATTTCAGTAATTTTCACAAATC-AGG
1 GG-TATTTTAGTAATTTT-ACAAGTCGA-A
*
58474430 GGTATTTTGGTAATTTTACAA
1 GGTATTTTAGTAATTTTACAA
58474451 ACAAGGGGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.05
27 38 0.62
28 18 0.30
29 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTACAAGTCGAA
Found at i:58474513 original size:27 final size:27
Alignment explanation
Indices: 58474411--58474514 Score: 138
Period size: 27 Copynumber: 3.8 Consensus size: 27
58474401 GGATATTTCA
* * *
58474411 GTAATTTTCACAAATCAGGGGTATTTTG
1 GTAATTTT-ATAAACCAAGGGTATTTTG
*
58474439 GTAATTTTACAAA-CAAGGGGTATTTTG
1 GTAATTTTATAAACCAA-GGGTATTTTG
58474466 GTAATTTTATAAACCAAGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTG
*
58474493 GTAATTTTGTAAACCAAGGGTA
1 GTAATTTTATAAACCAAGGGTA
58474515 AAACGATAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
26 2 0.03
27 58 0.82
28 11 0.15
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GTAATTTTATAAACCAAGGGTATTTTG
Found at i:58474524 original size:27 final size:27
Alignment explanation
Indices: 58474465--58474730 Score: 264
Period size: 27 Copynumber: 9.9 Consensus size: 27
58474455 GGGGTATTTT
* * ****
58474465 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
58474492 GGTAATTTTGTAAACCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * * * *
58474519 GATAATTCTGTAAATTGATGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
*
58474546 GGTAATTTTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
*
58474573 GGTAATTTTATAAA-CTGAGGGTAAAAT
1 GGTAATTTTATAAATC-GAGGGTAAAAC
* *
58474600 GGTAATTTTATAAATTGAGGGTAAAAA
1 GGTAATTTTATAAATCGAGGGTAAAAC
*
58474627 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
58474654 GGTAATTCTATAAATTGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
58474681 GGTAATTCTATAAATTGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
58474708 GGTAATTCTGTAAATCGGGGGTA
1 GGTAATTTTATAAATCGAGGGTA
58474731 CTTTGATAAT
Statistics
Matches: 208, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 207 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.33
Consensus pattern (27 bp):
GGTAATTTTATAAATCGAGGGTAAAAC
Found at i:58474556 original size:81 final size:81
Alignment explanation
Indices: 58474465--58474730 Score: 334
Period size: 81 Copynumber: 3.3 Consensus size: 81
58474455 GGGGTATTTT
* * *** * ** * * *
58474465 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTAAAACGATAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAACTGAGGGTAAAATGGTAATTCTAT
* *
58474530 AAATTGATGGTAAAAC
66 AAATTGAGGGTAAAAA
*
58474546 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAACTGAGGGTAAAATGGTAATTTTAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAACTGAGGGTAAAATGGTAATTCTAT
58474611 AAATTGAGGGTAAAAA
66 AAATTGAGGGTAAAAA
* * * *
58474627 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAACTGAGGGTAAAATGGTAATTCTAT
*
58474692 AAATTGAGGGTAAAAT
66 AAATTGAGGGTAAAAA
* * *
58474708 GGTAATTCTGTAAATCGGGGGTA
1 GGTAATTTTATAAATCGAGGGTA
58474731 CTTTGATAAT
Statistics
Matches: 163, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 163 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.33
Consensus pattern (81 bp):
GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAACTGAGGGTAAAATGGTAATTCTAT
AAATTGAGGGTAAAAA
Found at i:58498669 original size:47 final size:46
Alignment explanation
Indices: 58498603--58498770 Score: 137
Period size: 47 Copynumber: 3.5 Consensus size: 46
58498593 TGTGTGCTAC
*
58498603 TGTAAGA-CATGTCTAGGACATGCGCCGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATG-GCCGGCCACATTATGAGAGCCAG
* * *
58498649 TGTAAGACCATGTCTGGGACATGGCATCGG-CATGGATATGTGAGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGC--CGGCCA--CAT-TATGAGAGCCAG
* * ** *
58498699 TGTAAGACTAGGTCTGGGACATGG-CATCGAC-TTAATGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCCGGCCACATT-AT-GA-GAGCCAG
*
58498746 TGTAAGGCCATGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
58498771 ATCAGCATTA
Statistics
Matches: 96, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 11 0.11
47 44 0.46
48 4 0.04
49 2 0.02
50 32 0.33
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGGCCGGCCACATTATGAGAGCCAG
Found at i:58498771 original size:47 final size:50
Alignment explanation
Indices: 58498639--58498773 Score: 179
Period size: 50 Copynumber: 2.8 Consensus size: 50
58498629 GGCCACATTA
*
58498639 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGGATATG
* * * *
58498689 TGAGAGTCAGTGTAAGACTAGGTCTGGGACATGGCATCGAC-T-TA-ATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGGATATG
*
58498736 -GATGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATC
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
58498774 AGCATTATAC
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 34 0.45
48 1 0.01
49 1 0.01
50 37 0.49
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (50 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGGATATG
Found at i:58501627 original size:15 final size:15
Alignment explanation
Indices: 58501609--58501639 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58501599 AAACTCGCAC
58501609 AAACCAAATTCACAT
1 AAACCAAATTCACAT
*
58501624 AAACCAAATTCGCAT
1 AAACCAAATTCACAT
58501639 A
1 A
58501640 CTTGAATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.26, G:0.03, T:0.19
Consensus pattern (15 bp):
AAACCAAATTCACAT
Found at i:58511303 original size:46 final size:46
Alignment explanation
Indices: 58511250--58511425 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
58511240 TATTTGGGCA
58511250 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGAG
*** * * *
58511296 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAG-G
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAGAG
*
58511341 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-ACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGA-G
* * **
58511389 CCCGAGCTCGTTGAGTTGAAACCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58511426 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 35 0.32
48 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGAG
Found at i:58511405 original size:93 final size:93
Alignment explanation
Indices: 58511246--58511417 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
58511236 GGGATATTTG
*
58511246 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGAGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGAGCCCGAACTCGTTGAG
**
58511311 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAAACCGAGTTCGAGAGATGTAACTA
* *
58511339 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-ACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGA-GCCCGAACTCGTTGA
58511403 GTTGAAACCGAGTTC
65 GTTGAAACCGAGTTC
58511418 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGAGCCCGAACTCGTTGAG
TTGAAACCGAGTTCGAGAGATGTAACTA
Found at i:58515394 original size:23 final size:23
Alignment explanation
Indices: 58515368--58515413 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
58515358 CACGTTGTCA
*
58515368 CGACATCATGATCTTCCTCGTCG
1 CGACATCATGATCCTCCTCGTCG
*
58515391 CGACGTCATGATCCTCCTCGTCG
1 CGACATCATGATCCTCCTCGTCG
58515414 TAACATCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.20, T:0.28
Consensus pattern (23 bp):
CGACATCATGATCCTCCTCGTCG
Found at i:58517940 original size:52 final size:51
Alignment explanation
Indices: 58517854--58517999 Score: 205
Period size: 52 Copynumber: 2.9 Consensus size: 51
58517844 CCCTTGTAGT
*
58517854 CAAAGCT-TCCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATCTTTCTTCA-AAAGTGGCCTTCACATAGTACCACACTTGTGAC
*
58517905 CAAAGCTATCTTTCTTCAAAAACTGGCCTTCACATAGTACCACAC-T-TGAC
1 CAAAGCTATCTTTCTTC-AAAAGTGGCCTTCACATAGTACCACACTTGTGAC
58517955 C-AAGCTATCTCTTCTT--AAAGTGGCCTTCACATAGTACCACACTTG
1 CAAAGCTATCT-TTCTTCAAAAGTGGCCTTCACATAGTACCACACTTG
58518000 AGTCACTAGT
Statistics
Matches: 87, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
47 25 0.29
48 1 0.01
49 9 0.10
50 10 0.11
51 8 0.09
52 33 0.38
53 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (51 bp):
CAAAGCTATCTTTCTTCAAAAGTGGCCTTCACATAGTACCACACTTGTGAC
Found at i:58521776 original size:40 final size:40
Alignment explanation
Indices: 58521715--58521961 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
58521705 CGGAATTTAG
* * * *
58521715 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
58521755 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
58521795 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
58521835 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
58521875 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
58521915 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
58521955 CCGGATA
1 CCGGATA
58521962 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:58528712 original size:37 final size:36
Alignment explanation
Indices: 58528640--58528717 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
58528630 TTATTACGAA
* * *
58528640 GTCTTACCCGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
*
58528676 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCC-GACAAAATCCCCACACGAAGTCATCGG
58528713 GTCTT
1 GTCTT
58528718 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 9 0.24
37 28 0.76
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
Found at i:58528973 original size:47 final size:47
Alignment explanation
Indices: 58528835--58529112 Score: 401
Period size: 47 Copynumber: 6.1 Consensus size: 47
58528825 CCCTTCGGGA
* * ** * * *
58528835 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58528882 CCTGTCACATATATACAC--T----TTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58528922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58528969 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58529015 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58529062 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58529109 CTTA
1 CTTA
58529113 CTATCATTTC
Statistics
Matches: 208, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
40 28 0.13
41 3 0.01
42 1 0.00
45 1 0.00
46 50 0.24
47 125 0.60
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58529022 original size:93 final size:94
Alignment explanation
Indices: 58528835--58529112 Score: 401
Period size: 93 Copynumber: 3.0 Consensus size: 94
58528825 CCCTTCGGGA
* * ** * * * * *
58528835 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58528900 --T----TTCA-CACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
58528922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58528986 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
58529015 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58529080 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
58529109 CTTA
1 CTTA
58529113 CTATCATTTC
Statistics
Matches: 172, Mismatches: 11, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
86 12 0.07
87 43 0.25
88 1 0.01
92 4 0.02
93 67 0.39
94 45 0.26
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:58532096 original size:37 final size:37
Alignment explanation
Indices: 58532020--58532098 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
58532010 TTATTACGAA
* * * *
58532020 GTCTTACCCAGACATAATCTCCACATGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* * *
58532057 GTCTTACCCGGACAAAATCCCCACACGTAGTCATTGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
58532094 GTCTT
1 GTCTT
58532099 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:58533014 original size:40 final size:37
Alignment explanation
Indices: 58532961--58533095 Score: 108
Period size: 40 Copynumber: 3.4 Consensus size: 37
58532951 CATGATTGCT
* *
58532961 CTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 CTTCGGAACTTAGC-CGGATATATCACTAGCAC-AATGC
* * *
58533000 TCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGAACTTAG-CCGGATATA-TCACTAGCA-CAATGC
* * *
58533041 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGAACTTAG-CCGGATAT-ATCAC-TAGCACAATGC
*
58533081 CTTCGGGACTTAGCC
1 CTTCGGAACTTAGCC
58533096 CAGACATCAT
Statistics
Matches: 76, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
39 2 0.03
40 56 0.74
41 17 0.22
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (37 bp):
CTTCGGAACTTAGCCGGATATATCACTAGCACAATGC
Found at i:58533438 original size:29 final size:29
Alignment explanation
Indices: 58533399--58533477 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
58533389 CTTAATAATC
*
58533399 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
58533429 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
58533458 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
58533478 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:58533520 original size:43 final size:43
Alignment explanation
Indices: 58533459--58533561 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
58533449 TGCATTTCAA
58533459 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
58533502 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
58533545 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
58533562 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:58535488 original size:37 final size:37
Alignment explanation
Indices: 58535412--58535490 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
58535402 TTATTACGAA
* * * *
58535412 GTCTTACCCAGACATAATCTCCACATGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* * *
58535449 GTCTTACCCGGACAAAATCCCCACACGTAGTCATTGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
58535486 GTCTT
1 GTCTT
58535491 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:58535759 original size:47 final size:47
Alignment explanation
Indices: 58535609--58535893 Score: 455
Period size: 47 Copynumber: 6.1 Consensus size: 47
58535599 CCCTTCGGGA
* * * * * * *
58535609 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58535656 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58535702 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58535749 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58535796 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58535843 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58535890 CTTA
1 CTTA
58535894 CTATCATTTC
Statistics
Matches: 220, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 40 0.18
47 180 0.82
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58541050 original size:21 final size:22
Alignment explanation
Indices: 58541011--58541051 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
58541001 AAATGCCCAA
*
58541011 AATGTGTTTGTGTATTAAATTG
1 AATGTGTTGGTGTATTAAATTG
58541033 AATGTGTTGGTG-ATTAAAT
1 AATGTGTTGGTGTATTAAAT
58541052 AAGTTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.46
Consensus pattern (22 bp):
AATGTGTTGGTGTATTAAATTG
Found at i:58543936 original size:62 final size:62
Alignment explanation
Indices: 58543866--58543991 Score: 198
Period size: 62 Copynumber: 2.0 Consensus size: 62
58543856 GTCTTTATTA
*
58543866 AAACGATCATAACTTGAGCTCTCGAACTCAAAATCAAATAATTCAAAGTGCATTTTGAAGCT
1 AAACGATCATAACTTGAGCTCTCGAACTCAAAATCAAATAATTCAAAGTGCATTTCGAAGCT
* ** * *
58543928 AAACGATCATAACTTGAGCTCTTGAACTCAAAATTGAATGATTCAAAGTGCGTTTCGAAGCT
1 AAACGATCATAACTTGAGCTCTCGAACTCAAAATCAAATAATTCAAAGTGCATTTCGAAGCT
58543990 AA
1 AA
58543992 GAGATTGATT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (62 bp):
AAACGATCATAACTTGAGCTCTCGAACTCAAAATCAAATAATTCAAAGTGCATTTCGAAGCT
Found at i:58546217 original size:20 final size:20
Alignment explanation
Indices: 58546192--58546232 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
58546182 TATTAAGTTT
*
58546192 CACATTTTCCTTGTTGAAAC
1 CACATTTTCCTTATTGAAAC
58546212 CACATTTTCCTTATTGAAAC
1 CACATTTTCCTTATTGAAAC
58546232 C
1 C
58546233 TATGGAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (20 bp):
CACATTTTCCTTATTGAAAC
Found at i:58546603 original size:5 final size:5
Alignment explanation
Indices: 58546593--58546620 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
58546583 TCTATGTGAA
58546593 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
58546621 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:58551023 original size:5 final size:5
Alignment explanation
Indices: 58551013--58551044 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
58551003 AATTTGTGAA
58551013 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
58551045 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:58551038 original size:9 final size:9
Alignment explanation
Indices: 58551014--58551044 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
58551004 ATTTGTGAAA
58551014 AAATAAAAT
1 AAATAAAAT
58551023 AAAATAAAAT
1 -AAATAAAAT
58551033 AAATAAAAT
1 AAATAAAAT
58551042 AAA
1 AAA
58551045 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:58559188 original size:20 final size:20
Alignment explanation
Indices: 58559149--58559214 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
58559139 TAAATTTTAA
* * *
58559149 TAAAAATATTTAAAAGTTAT
1 TAAAAATAGTAAAAAATTAT
*
58559169 TAAGAATTAG-AAAAAATTA-
1 TAA-AAATAGTAAAAAATTAT
*
58559188 TAAAAATCGTAAAAAATTAT
1 TAAAAATAGTAAAAAATTAT
58559208 TAAAAAT
1 TAAAAAT
58559215 GCAAAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 4 0.11
19 12 0.32
20 17 0.46
21 4 0.11
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.32
Consensus pattern (20 bp):
TAAAAATAGTAAAAAATTAT
Found at i:58559201 original size:19 final size:19
Alignment explanation
Indices: 58559179--58559250 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
58559169 TAAGAATTAG
58559179 AAAAAATTATAAAAATCGT
1 AAAAAATTATAAAAATCGT
*
58559198 AAAAAATTATTAAAAAT-GC
1 AAAAAATTA-TAAAAATCGT
**
58559217 AAAATTTTATAAAAAAATCGT
1 AAAAAATTAT--AAAAATCGT
*
58559238 -GAAAATTATAAAA
1 AAAAAATTATAAAA
58559251 TATATAGAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
18 5 0.12
19 17 0.40
20 19 0.45
21 1 0.02
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (19 bp):
AAAAAATTATAAAAATCGT
Found at i:58559212 original size:10 final size:10
Alignment explanation
Indices: 58559131--58559214 Score: 55
Period size: 10 Copynumber: 8.5 Consensus size: 10
58559121 TAAAATTTGT
58559131 AAAATTATTA
1 AAAATTATTA
** *
58559141 AATTTTAATA
1 AAAATTATTA
58559151 AAAA-TATTTA
1 AAAATTA-TTA
*
58559161 AAAGTTATTA
1 AAAATTATTA
* **
58559171 AGAATTAGAA
1 AAAATTATTA
58559181 AAAATTA-TA
1 AAAATTATTA
** *
58559190 AAAATCGTAA
1 AAAATTATTA
58559200 AAAATTATTA
1 AAAATTATTA
58559210 AAAAT
1 AAAAT
58559215 GCAAAATTTT
Statistics
Matches: 52, Mismatches: 19, Indels: 6
0.68 0.25 0.08
Matches are distributed among these distances:
9 8 0.15
10 42 0.81
11 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.35
Consensus pattern (10 bp):
AAAATTATTA
Found at i:58559321 original size:20 final size:20
Alignment explanation
Indices: 58559293--58559330 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58559283 TTATAAAGTC
* *
58559293 GTAAGAAAATTGTAAAAAAT
1 GTAAAAAAATTATAAAAAAT
58559313 GTAAAAAAATTATAAAAA
1 GTAAAAAAATTATAAAAA
58559331 TTATCGTGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.24
Consensus pattern (20 bp):
GTAAAAAAATTATAAAAAAT
Found at i:58560639 original size:20 final size:20
Alignment explanation
Indices: 58560611--58560653 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
58560601 CTAACATACT
* * *
58560611 TATCTACGTGGCATGTCTTA
1 TATCCACGTCGCATGTCATA
58560631 TATCCACGTCGCATGTCATA
1 TATCCACGTCGCATGTCATA
58560651 TAT
1 TAT
58560654 TAGCTTCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (20 bp):
TATCCACGTCGCATGTCATA
Found at i:58560874 original size:9 final size:9
Alignment explanation
Indices: 58560835--58560879 Score: 54
Period size: 9 Copynumber: 4.7 Consensus size: 9
58560825 TTTTCTAACA
*
58560835 TATAAAATT
1 TATAATATT
58560844 TATAATTATTT
1 TATAA-TA-TT
58560855 TATATATATT
1 TATA-ATATT
58560865 TATAATATT
1 TATAATATT
58560874 TATAAT
1 TATAAT
58560880 TTATATTTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
9 16 0.50
10 7 0.22
11 8 0.25
12 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATAATATT
Found at i:58561539 original size:19 final size:20
Alignment explanation
Indices: 58561501--58561541 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
58561491 TAGAAAAATC
58561501 TTATTATGTATAAATTATAA
1 TTATTATGTATAAATTATAA
58561521 TTATTA-GT-TAAATTTATAA
1 TTATTATGTATAAA-TTATAA
58561540 TT
1 TT
58561542 TTCAGATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 10 0.50
20 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
TTATTATGTATAAATTATAA
Found at i:58562518 original size:25 final size:25
Alignment explanation
Indices: 58562484--58562535 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
58562474 GCTTCAGATG
*
58562484 TATTGACCTTCAAACTAAAATTATC
1 TATTGACCTTCAAACTAAAACTATC
58562509 TATTGACCTTCAAACTAAAACTATC
1 TATTGACCTTCAAACTAAAACTATC
58562534 TA
1 TA
58562536 CTAGCTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (25 bp):
TATTGACCTTCAAACTAAAACTATC
Found at i:58564516 original size:55 final size:53
Alignment explanation
Indices: 58564383--58564580 Score: 204
Period size: 55 Copynumber: 3.7 Consensus size: 53
58564373 AACTTACTAT
*
58564383 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
* * * *
58564436 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAA
*** *
58564491 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA
* * *
58564545 TTCCCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTT
58564581 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.02
53 39 0.32
54 9 0.07
55 70 0.57
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
Found at i:58567133 original size:14 final size:15
Alignment explanation
Indices: 58567114--58567146 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
58567104 TTAATAATTG
58567114 TAAATGAAAG-AAAA
1 TAAATGAAAGTAAAA
*
58567128 TAAATGAAGGTAAAA
1 TAAATGAAAGTAAAA
58567143 TAAA
1 TAAA
58567147 AGATATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (15 bp):
TAAATGAAAGTAAAA
Found at i:58570414 original size:23 final size:22
Alignment explanation
Indices: 58570383--58570442 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
58570373 TTTAAACAAG
* *
58570383 TATTCATATTTATGTTATTAAAA
1 TATTAATATTTATGTTA-GAAAA
*
58570406 TATTAATATCTTTTGTTAGAAAA
1 TATTAATAT-TTATGTTAGAAAA
*
58570429 TATTTATTATTTAT
1 TA-TTAATATTTAT
58570443 AAATTGAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 17 0.57
24 13 0.43
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (22 bp):
TATTAATATTTATGTTAGAAAA
Found at i:58570983 original size:21 final size:21
Alignment explanation
Indices: 58570959--58570999 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
58570949 TGTATTTGTA
58570959 TTTTTATTTTTAAAAATTTAT
1 TTTTTATTTTTAAAAATTTAT
*
58570980 TTTTTATTTTTAAAATTTTA
1 TTTTTATTTTTAAAAATTTA
58571000 AAACTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTTATTTTTAAAAATTTAT
Found at i:58571191 original size:14 final size:15
Alignment explanation
Indices: 58571166--58571199 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
58571156 ATAAAACTTA
58571166 AAAAATATAAAATAT
1 AAAAATATAAAATAT
58571181 AAAAATA-AAAATAT
1 AAAAATATAAAATAT
58571195 AAAAA
1 AAAAA
58571200 CTGAATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATATAAAATAT
Found at i:58574642 original size:27 final size:27
Alignment explanation
Indices: 58574612--58574789 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
58574602 ATATTGAGCC
* *
58574612 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
58574639 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
58574666 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*** ** *
58574694 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
58574721 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
58574748 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
58574775 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58574790 GTACAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.79
28 22 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:58574724 original size:55 final size:54
Alignment explanation
Indices: 58574612--58574789 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
58574602 ATATTGAGCC
* * *
58574612 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
* * * *
58574666 CGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTG-C-CGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACGTA--ATCAAAT
* * ** * *
58574721 CGCACTCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-AAAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACGTAA-TCA-AAT
58574775 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58574790 GTACAATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
53 5 0.05
54 52 0.53
55 40 0.41
56 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
Found at i:58582640 original size:27 final size:27
Alignment explanation
Indices: 58582610--58582787 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
58582600 ATATTGAGCC
* *
58582610 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
58582637 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
58582664 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*** ** *
58582692 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
58582719 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
58582746 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
58582773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58582788 GTACAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.79
28 22 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:58582722 original size:55 final size:54
Alignment explanation
Indices: 58582610--58582787 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
58582600 ATATTGAGCC
* * *
58582610 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
* * * *
58582664 CGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTG-C-CGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACGTA--ATCAAAT
* * ** * *
58582719 CGCACTCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-AAAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACGTAA-TCA-AAT
58582773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58582788 GTACAATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
53 5 0.05
54 52 0.53
55 40 0.41
56 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
Found at i:58590561 original size:39 final size:39
Alignment explanation
Indices: 58590430--58590652 Score: 197
Period size: 39 Copynumber: 5.7 Consensus size: 39
58590420 GCTCCTCGTT
* * * * * *
58590430 CAAATGCCTTCGGAACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-TATCTCGCA
58590470 C-AATGCCTTCGGGACTTAACCCGGATTTA-ATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTATAT--CTCGCA
*
58590509 CGAATGCCTTCGGGACTTAACCCGGATTTATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTATATCTCGCA
* * *
58590548 CAAAGGCCTTCGGG-CTTAACCCGGAACTTGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTATATCTCGCA
** * *
58590587 CAAATGCCTTC-GGATCTTAGTCCGGATATAT-TCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTATAT--C-TCGCA
*
58590628 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
58590653 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 18, Indels: 22
0.79 0.09 0.11
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 73 0.47
40 54 0.35
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTATATCTCGCA
Found at i:58590593 original size:78 final size:78
Alignment explanation
Indices: 58590430--58590652 Score: 202
Period size: 79 Copynumber: 2.8 Consensus size: 78
58590420 GCTCCTCGTT
* * *
58590430 CAAATGCCTTCGGAACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
58590495 TTTAATGACTCGCA
66 TTTAAT-ACTCGCA
* * * * *
58590509 CGAATGCCTTCGGGACTTAACCCGGATTTA-TATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGG
58590572 AACTTGT-AT-CTCGCA
65 -A-TT-TAATACTCGCA
* * ** * * * * * *
58590587 CAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTAACCCGG
58590652 A
65 A
58590653 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
78 48 0.41
79 52 0.44
80 16 0.14
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:58590661 original size:41 final size:41
Alignment explanation
Indices: 58590584--58590661 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
58590574 CTTGTATCTC
* * *
58590584 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
58590625 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
58590662 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:58600958 original size:46 final size:46
Alignment explanation
Indices: 58600908--58601080 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
58600898 TGGTTGAGCA
*
58600908 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
58600954 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
58600999 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
58601047 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58601081 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58601064 original size:93 final size:93
Alignment explanation
Indices: 58600905--58601075 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
58600895 GGATGGTTGA
* * *
58600905 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
58600970 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
58600998 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58601063 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58601076 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58604890 original size:18 final size:18
Alignment explanation
Indices: 58604867--58604902 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
58604857 ATGTACTAGT
58604867 CAAGCAATAACTTAAGAA
1 CAAGCAATAACTTAAGAA
58604885 CAAGCAATAACTTAAGAA
1 CAAGCAATAACTTAAGAA
58604903 AATTTCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17
Consensus pattern (18 bp):
CAAGCAATAACTTAAGAA
Found at i:58610070 original size:3 final size:3
Alignment explanation
Indices: 58610062--58610106 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
58610052 AAATAGATAT
* *
58610062 TTA TTA TTA -TA TTA TTA TAA TGTA TTA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
58610107 ACTAACATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.06
3 32 0.89
4 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:58611011 original size:70 final size:75
Alignment explanation
Indices: 58610935--58611110 Score: 184
Period size: 70 Copynumber: 2.3 Consensus size: 75
58610925 ATGTGAACAA
* * *
58610935 ATTGGAAATTAAAAGTGATTTAAATT-AAGT-AATTGAATT-AT-G-AATTATGTGAATATTTGA
1 ATTGGAAACTAAAAGTGATTTGAATTGAA-TAAATTGAATTAATAGAAAATATGTGAATATTTGA
58610995 AA-GTATATTG
65 AATGTATATTG
* *
58611005 ATTGGAAACTAAGAGTGATTTGAATTGAATCAAATTGAATTGAATGAAGAAAATATGTGAGTATT
1 ATTGGAAACTAAAAGTGATTTGAATTGAAT-AAATTGAATT-AAT--AGAAAATATGTGAATATT
58611070 TGAAATGTATATTG
62 TGAAATGTATATTG
* * *
58611084 ATTGAAAAGTAATTAGTGATTTGAATT
1 ATTGGAAACTAA-AAGTGATTTGAATT
58611111 TGATTGGAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
70 24 0.28
71 2 0.02
72 9 0.10
74 2 0.02
77 1 0.01
78 18 0.21
79 18 0.21
80 13 0.15
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.38
Consensus pattern (75 bp):
ATTGGAAACTAAAAGTGATTTGAATTGAATAAATTGAATTAATAGAAAATATGTGAATATTTGAA
ATGTATATTG
Found at i:58611145 original size:86 final size:78
Alignment explanation
Indices: 58610980--58611130 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 78
58610970 AATTATGAAT
* *
58610980 TATGTGAATATTTGAAAGTATATTGATTGGAAACTAAGAGTGATTTGAATTGAATCAAATTGAAT
1 TATGTGAATATTTGAAAGTATATTGATTGAAAACTAAGAGTGATTTGAATTGAATCAAAATGAAT
*
58611045 TGAATGAAGAAAA
66 TAAATGAAGAAAA
* * * * *
58611058 TATGTGAGTATTTGAAATGTATATTGATTGAAAAGTAATTAGTGATTTGAATTTGATTGGAAAAT
1 TATGTGAATATTTGAAA-GTATATTGATTGAAAACTAA-GAGTGATTTGAA-TTGAAT-CAAAAT
58611123 GAATTAAA
62 GAATTAAA
58611131 AATATGAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 16 0.26
79 18 0.30
80 11 0.18
81 5 0.08
82 11 0.18
ACGTcount: A:0.42, C:0.01, G:0.21, T:0.36
Consensus pattern (78 bp):
TATGTGAATATTTGAAAGTATATTGATTGAAAACTAAGAGTGATTTGAATTGAATCAAAATGAAT
TAAATGAAGAAAA
Found at i:58611301 original size:16 final size:17
Alignment explanation
Indices: 58611280--58611317 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
58611270 AAAAGTGAAT
58611280 TTGAATTGAA-TGAGAA
1 TTGAATTGAATTGAGAA
*
58611296 TTGAATTGAATTGTGAA
1 TTGAATTGAATTGAGAA
58611313 TTGAA
1 TTGAA
58611318 AGTGAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (17 bp):
TTGAATTGAATTGAGAA
Found at i:58611313 original size:17 final size:16
Alignment explanation
Indices: 58611274--58611317 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
58611264 AAGTGGAAAA
58611274 GTGAATTTGAATTGAAT
1 GTGAA-TTGAATTGAAT
*
58611291 GAGAATTGAATTGAATT
1 GTGAATTGAATTGAA-T
58611308 GTGAATTGAA
1 GTGAATTGAA
58611318 AGTGAAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (16 bp):
GTGAATTGAATTGAAT
Found at i:58620535 original size:27 final size:28
Alignment explanation
Indices: 58620505--58620623 Score: 113
Period size: 27 Copynumber: 4.4 Consensus size: 28
58620495 TTTAGTTTAC
58620505 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
58620532 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
58620559 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* *
58620586 TAAAATTACC-AAAGTACCCCT-GATTTA
1 TAAAATTACCGAAA-TACCCTTAGATTTG
*
58620613 TAGAATTACCG
1 TAAAATTACCG
58620624 TTTTACCCCT
Statistics
Matches: 77, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
26 7 0.09
27 67 0.87
28 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:58620604 original size:54 final size:54
Alignment explanation
Indices: 58620500--58620623 Score: 128
Period size: 54 Copynumber: 2.3 Consensus size: 54
58620490 AATACTTTAG
* *
58620500 TTTACTAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATA-CCCTCGA
1 TTTA-TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCT-GA
* * * *
58620555 TTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCTGA
1 TTTATAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCTGA
*
58620609 TTTATAGAATTACCG
1 TTTATAAAATTACCG
58620624 TTTTACCCCT
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
53 8 0.14
54 42 0.74
55 7 0.12
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCTGA
Found at i:58620630 original size:27 final size:27
Alignment explanation
Indices: 58620600--58620783 Score: 203
Period size: 27 Copynumber: 6.8 Consensus size: 27
58620590 ATTACCAAAG
*
58620600 TACCCCTGATTTATAGAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* * *
58620627 TACCCCTGATTTACATAATTATCATTT
1 TACCCCTGATTTACAGAATTACCGTTT
*
58620654 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACAGAATTACCGTTT
* *
58620681 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* *
58620708 TA-CCCTCGATTTATAGAATTACTGTTT
1 TACCCCT-GATTTACAGAATTACCGTTT
* **
58620735 TACCCTTGATTTACAGAATTACTATTT
1 TACCCCTGATTTACAGAATTACCGTTT
*
58620762 TA-CCCTCGATTTACAAAATTAC
1 TACCCCT-GATTTACAGAATTAC
58620784 TAAAATACCA
Statistics
Matches: 134, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.07
27 118 0.88
28 6 0.04
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCCTGATTTACAGAATTACCGTTT
Found at i:58620638 original size:81 final size:82
Alignment explanation
Indices: 58620546--58620731 Score: 198
Period size: 81 Copynumber: 2.3 Consensus size: 82
58620536 AATACTGAAA
* * **
58620546 TACCCTCGATTTGTAAAATTACTGA-AATACCTTCGACTTGTAAAATTACCAAAGTACCCCTGAT
1 TACCCTCGATTTATAAAATTACTGATAATACCCTCGACTTACAAAATTACCAAAGTACCCCTGAT
58620610 TTATAGAATTACCGTTT
66 TTATAGAATTACCGTTT
* * * ** * **** *
58620627 TACCC-CTGATTTACATAATTA-TCATTTTACCCTCGACTTACAGAATTACCGTTTTACCCTTGA
1 TACCCTC-GATTTATAAAATTACTGATAATACCCTCGACTTACAAAATTACCAAAGTACCCCTGA
58620690 TTTATAGAATTACCGTTT
65 TTTATAGAATTACCGTTT
*
58620708 TACCCTCGATTTATAGAATTACTG
1 TACCCTCGATTTATAAAATTACTG
58620732 TTTTACCCTT
Statistics
Matches: 83, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
80 3 0.04
81 78 0.94
82 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (82 bp):
TACCCTCGATTTATAAAATTACTGATAATACCCTCGACTTACAAAATTACCAAAGTACCCCTGAT
TTATAGAATTACCGTTT
Found at i:58620647 original size:54 final size:54
Alignment explanation
Indices: 58620603--58620783 Score: 256
Period size: 54 Copynumber: 3.4 Consensus size: 54
58620593 ACCAAAGTAC
* * *
58620603 CCCT-GATTTATAGAATTACCGTTTTACCCCTGATTTACATAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCATTTTA
* * * *
58620656 CCCTCGACTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCATTTTA
* *
58620710 CCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCATTTTA
* *
58620764 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
58620784 TAAAATACCA
Statistics
Matches: 112, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
53 4 0.04
54 108 0.96
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCATTTTA
Found at i:58620736 original size:81 final size:81
Alignment explanation
Indices: 58620600--58620783 Score: 237
Period size: 81 Copynumber: 2.3 Consensus size: 81
58620590 ATTACCAAAG
* *
58620600 TACCCCTGATTTATAGAATTACCGTTTTACCCCTGATTTACATAATTATCATTTTACCCTCGACT
1 TACCCTTGATTTATAGAATTACCGTTTTACCCCTGATTTACAGAATTATCATTTTACCCTCGACT
*
58620665 TACAGAATTACCGTTT
66 TACAGAATTACCATTT
* * *
58620681 TACCCTTGATTTATAGAATTACCGTTTTA-CCCTCGATTTATAGAATTA-CTGTTTTACCCTTGA
1 TACCCTTGATTTATAGAATTACCGTTTTACCCCT-GATTTACAGAATTATC-ATTTTACCCTCGA
* *
58620744 TTTACAGAATTACTATTT
64 CTTACAGAATTACCATTT
* * *
58620762 TACCCTCGATTTACAAAATTAC
1 TACCCTTGATTTATAGAATTAC
58620784 TAAAATACCA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 5 0.06
81 85 0.94
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTTGATTTATAGAATTACCGTTTTACCCCTGATTTACAGAATTATCATTTTACCCTCGACT
TACAGAATTACCATTT
Found at i:58620792 original size:27 final size:27
Alignment explanation
Indices: 58620708--58620983 Score: 96
Period size: 27 Copynumber: 10.1 Consensus size: 27
58620698 ATTACCGTTT
* * ****
58620708 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
58620735 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
58620762 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ** *
58620789 TACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
58620816 TACCC-CTAGTTTTTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * *** **
58620843 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* **
58620870 TACCCTCAATTTGTAAAATTA-TCAAAA
1 TACCCTCGATTTACAAAATTACT-AAAA
* *
58620897 TACCC-CTTATTTACAAAGTTA-TAGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
58620924 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
58620953 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
58620980 TACC
1 TACC
58620984 TTTGGTTTGT
Statistics
Matches: 197, Mismatches: 41, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
26 2 0.01
27 168 0.85
28 7 0.04
29 20 0.10
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:58620901 original size:54 final size:53
Alignment explanation
Indices: 58620762--58620901 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 53
58620752 ATTACTATTT
* * *
58620762 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTAC-AAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * *
58620816 TACCC-CTAGTTTTTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTATAAAATTA-CAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
58620870 TACCCTCAATTTGTAAAATTATCAAAATACCC
1 TACCCTCAATTTATAAAATTA-CAAAATACCC
58620902 CTTATTTACA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.01
54 70 0.96
55 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (53 bp):
TACCCTCAATTTATAAAATTACAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:58622261 original size:25 final size:25
Alignment explanation
Indices: 58622215--58622262 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
58622205 TTATAACATG
* *
58622215 AAAATAACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
* *
58622240 AAAATGACCATTATACCTCTAGG
1 AAAATAACCATTATACCCCTAGG
58622263 GTTTGTGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:58622365 original size:20 final size:20
Alignment explanation
Indices: 58622299--58622365 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
58622289 ATTTTGATAA
* *
58622299 ACATGGTATGTATGATGTGC
1 ACATGATATGTATGATATGC
*
58622319 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
58622339 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
58622359 ACATGAT
1 ACATGAT
58622366 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:58622471 original size:24 final size:23
Alignment explanation
Indices: 58622415--58622581 Score: 201
Period size: 24 Copynumber: 7.0 Consensus size: 23
58622405 GTGGAAGTGA
*
58622415 AAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
58622438 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
58622461 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
58622485 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
58622509 TAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
58622532 AAAAAGGGCTTTTTCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
58622557 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
58622581 A
1 A
58622582 TGCTAAAGCA
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
23 41 0.33
24 73 0.58
25 11 0.09
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:58622484 original size:47 final size:47
Alignment explanation
Indices: 58622415--58622581 Score: 203
Period size: 47 Copynumber: 3.5 Consensus size: 47
58622405 GTGGAAGTGA
* *
58622415 AAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
58622461 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * * *
58622509 TAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
58622557 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
58622582 TGCTAAAGCA
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 62 0.60
48 31 0.30
49 11 0.11
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:58622537 original size:71 final size:71
Alignment explanation
Indices: 58622415--58622580 Score: 235
Period size: 71 Copynumber: 2.3 Consensus size: 71
58622405 GTGGAAGTGA
* * * *
58622415 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
58622480 GTTATC
66 GTTATC
* *
58622486 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTTTTCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
*
58622551 GTTATT
66 GTTATC
*
58622557 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
58622581 ATGCTAAAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 74 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:58622809 original size:31 final size:31
Alignment explanation
Indices: 58622774--58622837 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
58622764 CGTTTACAGT
*
58622774 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
58622805 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
58622836 AA
1 AA
58622838 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:58635331 original size:28 final size:29
Alignment explanation
Indices: 58635290--58635347 Score: 100
Period size: 28 Copynumber: 2.0 Consensus size: 29
58635280 CATAGAGTCT
*
58635290 GCCTTGTGATGAACATG-AAAGACAACCC
1 GCCTTGTGACGAACATGAAAAGACAACCC
58635318 GCCTTGTGACGAACATGAAAAGACAACCC
1 GCCTTGTGACGAACATGAAAAGACAACCC
58635347 G
1 G
58635348 AACCTTAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 16 0.57
29 12 0.43
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (29 bp):
GCCTTGTGACGAACATGAAAAGACAACCC
Found at i:58639108 original size:94 final size:92
Alignment explanation
Indices: 58638987--58639293 Score: 271
Period size: 94 Copynumber: 3.3 Consensus size: 92
58638977 AGACAGGGCT
* * *
58638987 AGTGTAAGACGTGTCTGGGACATGCATCAGCCGTATCATGATAGCCCGTGTAAGACCACGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGTATCATGATAGCCAGTGTAAGACCATGTCTGG
* *
58639052 GACATGGCATCGGTGTAGAGGTGAGTGCC
66 GACATGGCATCGG-CTA-AGGTGACTGCC
* * * *
58639081 AGTGTAAGACATGTCTGGGACACGCATCGGCC-TCAATGATGTTAGCCAGTGTAAGA-CATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGT--ATCATGATAGCCAGTGTAAGACCATGTCT
* * * ** *
58639144 GGGATAT-GCACCGGCTAAGTTTCCTGCT
64 GGGACATGGCATCGGCTAAGGTGACTGCC
* * * * *
58639172 AGTGTAAGATATGTCTGGGACATGCATTATCACGTATACATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CGTAT-CATGATAGCCAGTGTAAGACCATGTCT
* * *
58639237 GGGACATGGCATTGGCCTCGATGGAGA-TAGCC
64 GGGACATGGCATCGG-CT--AAGGTGACT-GCC
*
58639269 AGCGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
58639294 GCAGCGGCAA
Statistics
Matches: 166, Mismatches: 35, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
91 34 0.20
92 18 0.11
93 21 0.13
94 46 0.28
95 20 0.12
96 1 0.01
97 12 0.07
98 14 0.08
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCGTATCATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCTAAGGTGACTGCC
Found at i:58659242 original size:46 final size:46
Alignment explanation
Indices: 58659192--58659364 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
58659182 TGGTTGAGCA
* * *
58659192 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
58659238 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
58659285 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
58659331 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58659365 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:58659348 original size:93 final size:93
Alignment explanation
Indices: 58659189--58659359 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
58659179 GGATGGTTGA
* * *
58659189 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
58659254 TGAGTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCGAGTTCGTGAGATGTAACCAG
* ** *
58659282 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
58659347 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58659360 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACCAG
Found at i:58662336 original size:15 final size:15
Alignment explanation
Indices: 58662297--58662376 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
58662287 GTATCTTGGG
*
58662297 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
58662312 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
58662327 TTTCTTTATTCCAGG-
1 TTTCTTTATT-CTGGA
*
58662342 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
58662357 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
58662371 TTTCTT
1 TTTCTT
58662377 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
13 1 0.02
14 11 0.21
15 36 0.68
16 5 0.09
ACGTcount: A:0.11, C:0.19, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:58662366 original size:30 final size:31
Alignment explanation
Indices: 58662288--58662367 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
58662278 CATAGTATCG
* * *
58662288 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCCAGGATCTCTC
*
58662318 TAT-TCTGGATTTCTTTATTCCAGG-TTTCTC
1 TATCT-TGGATTTCTTTATTCCAGGATCTCTC
58662348 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
58662368 GGTTTTCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 1 0.02
30 36 0.84
31 6 0.14
ACGTcount: A:0.12, C:0.19, G:0.14, T:0.55
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCAGGATCTCTC
Found at i:58663988 original size:46 final size:46
Alignment explanation
Indices: 58663938--58664110 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
58663928 TGGTTGAGCA
*
58663938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
58663984 TCCGAACTCGTTGAGTTGATTCCGAGTTC-GTGA--GATGTAACCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
58664031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
58664077 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58664111 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:58664094 original size:93 final size:93
Alignment explanation
Indices: 58663935--58664105 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
58663925 GGATGGTTGA
* *
58663935 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
58664000 TGATTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCGAGTTCGTGAGATGTAACCAG
* * *
58664028 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
58664093 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58664106 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACCAG
Found at i:58674197 original size:50 final size:50
Alignment explanation
Indices: 58674143--58674241 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 50
58674133 ATGATTAATC
58674143 AAGATGCAAACTAAATAAACA-AATGAGTTACATAATGCATA-ACATAATTT
1 AAGATGCAAACTAAATAAACATAA-GAGTTACATAATGCA-AGACATAATTT
* *
58674193 AAGATGCAAACTTAATTAACATAAGAGTTACATAATGCAAGACATAATT
1 AAGATGCAAACTAAATAAACATAAGAGTTACATAATGCAAGACATAATT
58674242 AAAACACAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
49 1 0.02
50 42 0.93
51 2 0.04
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (50 bp):
AAGATGCAAACTAAATAAACATAAGAGTTACATAATGCAAGACATAATTT
Found at i:58677448 original size:26 final size:26
Alignment explanation
Indices: 58677382--58677438 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
58677372 TATAACATTG
*
58677382 CTCACACGAGCTGTGAAATGAGTCTA
1 CTCACACTAGCTGTGAAATGAGTCTA
*
58677408 CTCACACTAGCTGTGAAATGGGTCTA
1 CTCACACTAGCTGTGAAATGAGTCTA
58677434 CTCAC
1 CTCAC
58677439 TTGAGTTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
CTCACACTAGCTGTGAAATGAGTCTA
Found at i:58680877 original size:19 final size:20
Alignment explanation
Indices: 58680853--58680890 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
58680843 GGTACCACCA
58680853 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
58680872 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
58680891 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:58681231 original size:93 final size:93
Alignment explanation
Indices: 58681120--58681290 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
58681110 GCCCCTAAGT
* * *
58681120 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
58681185 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
58681213 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
58681278 CGAGTTCGGATGC
66 CGAGTTCGGATGC
58681291 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:58681278 original size:46 final size:46
Alignment explanation
Indices: 58681115--58681287 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
58681105 AACCCGCCCC
* * * *
58681115 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
58681161 TAAATGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
58681209 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
58681254 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
58681288 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:58688458 original size:19 final size:20
Alignment explanation
Indices: 58688434--58688471 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
58688424 GGTACCACCA
58688434 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
58688453 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
58688472 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:58688811 original size:93 final size:93
Alignment explanation
Indices: 58688701--58688871 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
58688691 GCCCCTAAGT
* *
58688701 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
58688766 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
58688794 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
58688859 CGAGTTCGGATGC
66 CGAGTTCGGATGC
58688872 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:58688868 original size:46 final size:46
Alignment explanation
Indices: 58688696--58688868 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
58688686 AACCCGCCCC
* * * *
58688696 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
58688742 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
58688790 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
58688835 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
58688869 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:58693780 original size:17 final size:19
Alignment explanation
Indices: 58693753--58693787 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
58693743 TGCGGGACCA
58693753 TGTGAGCCCACAC-GCCCG
1 TGTGAGCCCACACAGCCCG
58693771 TGTG-GCCCACACAGCCC
1 TGTGAGCCCACACAGCCC
58693788 AGAATGACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.46, G:0.26, T:0.11
Consensus pattern (19 bp):
TGTGAGCCCACACAGCCCG
Found at i:58693946 original size:15 final size:15
Alignment explanation
Indices: 58693926--58693958 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
58693916 TGTCGACTAT
58693926 ACGCCCATGTCCTAC
1 ACGCCCATGTCCTAC
58693941 ACGCCCATGTCCTAC
1 ACGCCCATGTCCTAC
58693956 ACG
1 ACG
58693959 GCCGTGAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.45, G:0.15, T:0.18
Consensus pattern (15 bp):
ACGCCCATGTCCTAC
Found at i:58699819 original size:49 final size:49
Alignment explanation
Indices: 58699653--58699877 Score: 315
Period size: 49 Copynumber: 4.5 Consensus size: 49
58699643 TGAGGTCGCA
* * * * *
58699653 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
58699704 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
58699754 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
58699803 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
58699852 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
58699878 TGCGTACCAG
Statistics
Matches: 158, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
49 80 0.51
50 45 0.28
51 33 0.21
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:58699833 original size:99 final size:100
Alignment explanation
Indices: 58699646--58699885 Score: 331
Period size: 99 Copynumber: 2.4 Consensus size: 100
58699636 TCTATTGTGA
* *
58699646 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
58699711 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
58699746 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
*
58699809 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
58699845 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
58699886 AGATAGCTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
98 36 0.29
99 45 0.37
100 1 0.01
101 41 0.33
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:58702919 original size:30 final size:30
Alignment explanation
Indices: 58702883--58702951 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
58702873 TATCGTATCT
*
58702883 TGGGTTTCTTTA-CTCTGGGTTTCTTTATTC
1 TGGGTTTCTTTATCT-TGGATTTCTTTATTC
*
58702913 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
58702943 -GGTTTTCTT
1 TGGGTTTCTT
58702952 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 25 0.74
31 2 0.06
ACGTcount: A:0.07, C:0.16, G:0.19, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:58702951 original size:14 final size:15
Alignment explanation
Indices: 58702883--58702951 Score: 79
Period size: 15 Copynumber: 4.7 Consensus size: 15
58702873 TATCGTATCT
*
58702883 TGGGTTTCTTTACTC
1 TGGGTTTCTTTATTC
58702898 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
*
58702913 TGGGTTTCTCTA-TC
1 TGGGTTTCTTTATTC
*
58702927 TTGGATTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
58702943 -GGTTTTCTT
1 TGGGTTTCTT
58702952 GTTATCTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
14 10 0.21
15 35 0.74
16 2 0.04
ACGTcount: A:0.07, C:0.16, G:0.19, T:0.58
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:58705148 original size:50 final size:49
Alignment explanation
Indices: 58705083--58705298 Score: 235
Period size: 50 Copynumber: 4.4 Consensus size: 49
58705073 TGAGGTCGCA
* * *
58705083 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGAAAA-TGTGGTCACG
* * *
58705133 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC--AGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGAAAAT-G-T-GGTCACG
*
58705183 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGGATAAT-TGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACC-GAAAATGTGGTCACG
* * *
58705232 TGTGTAGTACTAAGTGCAGGCTACTACA-TGTACCAGATAAT-TGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTA-AGTGTACC-GAAAATGTGGTCACG
*
58705281 TGTGTAGTACTATGTGCA
1 TGTGTAGTACTAAGTGCA
58705299 ATCTACTACG
Statistics
Matches: 146, Mismatches: 13, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 69 0.47
50 71 0.49
53 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGAAAATGTGGTCACG
Found at i:58705248 original size:49 final size:49
Alignment explanation
Indices: 58705083--58705319 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
58705073 TGAGGTCGCA
* * * *
58705083 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAA-T-TGGTCACG
* * **
58705133 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATT-GGTCACG
*
58705183 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCACG
* *
58705232 TGTGTAGTACTAAGTGCAGGCTACTACA-TGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTA-AGTGTACCAGATAATTGGTCACG
* ** * *
58705281 TGTGTAGTACTATGTGCAATCTACTACGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATA
58705320 GCTTTGGCTA
Statistics
Matches: 163, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 85 0.52
50 76 0.47
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCACG
Found at i:58705269 original size:99 final size:99
Alignment explanation
Indices: 58705076--58705314 Score: 311
Period size: 99 Copynumber: 2.4 Consensus size: 99
58705066 TCTATTGTGA
* *
58705076 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGAAAACTGTGATCACGTGTGTAGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACCGAAAACTGTGATCACGTGTGTAGT
* * **
58705141 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * * *
58705175 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACC-GAAAACTGTGATCACGTGTGTA
58705238 GTACTAAGTGCAGGCTACTACATGTACCAGATAATT
64 GTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * ** *
58705274 GGTCGCATGTGTAGTACTATGTGCAATCTACTACGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACC
58705315 AGATAGCTTT
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 34 0.28
99 45 0.37
100 38 0.31
101 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (99 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACCGAAAACTGTGATCACGTGTGTAGT
ACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:58709229 original size:42 final size:43
Alignment explanation
Indices: 58709170--58709277 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
58709160 TTAGGGTTAG
* * * *
58709170 ATGAGATTTCGTGTAAGATCTTATCTAGGATA-CGGCATCGAT
1 ATGAGATTTCATGTAAGACCATAGCTAGGATATCGGCATCGAT
* * *
58709212 ATGAGATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGAT
1 ATGAGATTTCATGTAAGACCATAGCTAGGATATCGGCATCGAT
**
58709255 ATGAGATCCCATGTAAGACCATA
1 ATGAGATTTCATGTAAGACCATA
58709278 TTTGGGATAT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
42 26 0.46
43 30 0.54
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
ATGAGATTTCATGTAAGACCATAGCTAGGATATCGGCATCGAT
Found at i:58710347 original size:40 final size:40
Alignment explanation
Indices: 58710300--58710393 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
58710290 CGGCTATTTG
*
58710300 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
* * * *
58710340 TGGCACTTAGTGTGCAATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
* *
58710380 CGGCACTTGGTGTG
1 TGGCACTTAGTGTG
58710394 TGAGATATTG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
Found at i:58710421 original size:28 final size:28
Alignment explanation
Indices: 58710381--58710464 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 28
58710371 GGCTATGTAC
* * * *
58710381 GGCACTTGGTGTGTGAGATATTGAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
58710409 GGCACTTAGTGTGCGAGATATCGAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
** *
58710437 GGTGCTTAGTGTGCGAGACATCGAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
58710465 TCAACGGTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.31
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCGAGTAT
Found at i:58713214 original size:44 final size:43
Alignment explanation
Indices: 58713151--58713309 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
58713141 TATATGATAT
58713151 CGTGTAAGACCATGTCTGGGACGTTGGCATCGACT-TTTGTTTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGA-TATTTG-TTTA
* * *
58713195 CGTGTAAGACCATGTCTGGGACATTGGTATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTG-TTTA
* * *
58713237 CGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGTTTA
* * *
58713280 CATGTAAGACCACGTATGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
58713310 TGTATATGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 32 0.33
43 34 0.35
44 30 0.31
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGTTTA
Found at i:58723709 original size:26 final size:26
Alignment explanation
Indices: 58723679--58723740 Score: 115
Period size: 26 Copynumber: 2.3 Consensus size: 26
58723669 AACACATGGG
58723679 CCATCAAATTTCATTCCAAATTAAAA
1 CCATCAAATTTCATTCCAAATTAAAA
58723705 CCATCAAATTTCATTCCAAATTAAAA
1 CCATCAAATTTCATTCCAAATTAAAA
58723731 CCAATCAAAT
1 CC-ATCAAAT
58723741 AGAATCATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 28 0.80
27 7 0.20
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (26 bp):
CCATCAAATTTCATTCCAAATTAAAA
Found at i:58725435 original size:43 final size:43
Alignment explanation
Indices: 58725367--58725450 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
58725357 CATGAATCTT
* **
58725367 ATCCATCATGAACTCGGACCACTCAACGAGCTCGGATGCTCGC
1 ATCCATAATGAACTCAAACCACTCAACGAGCTCGGATGCTCGC
*
58725410 ATCCATAATGAACTCAAACCTCTCAACGAGCTCGGATGCTC
1 ATCCATAATGAACTCAAACCACTCAACGAGCTCGGATGCTC
58725451 CATATCTCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (43 bp):
ATCCATAATGAACTCAAACCACTCAACGAGCTCGGATGCTCGC
Found at i:58727466 original size:22 final size:22
Alignment explanation
Indices: 58727435--58727502 Score: 109
Period size: 22 Copynumber: 3.1 Consensus size: 22
58727425 AAACATGTCT
* *
58727435 AACCAGGTATTCCATTTGATCA
1 AACCATGTATTCCATTTGACCA
58727457 AACCATGTATTCCATTTGACCA
1 AACCATGTATTCCATTTGACCA
*
58727479 AACCATGTATTTCATTTGACCA
1 AACCATGTATTCCATTTGACCA
58727501 AA
1 AA
58727503 TAATCAACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (22 bp):
AACCATGTATTCCATTTGACCA
Found at i:58729733 original size:3 final size:3
Alignment explanation
Indices: 58729720--58729779 Score: 75
Period size: 3 Copynumber: 20.0 Consensus size: 3
58729710 ATGTTAGATG
* * * *
58729720 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT TAC TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
58729768 TAT TAT TGT TAT
1 TAT TAT TAT TAT
58729780 CATACTATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:58730138 original size:21 final size:21
Alignment explanation
Indices: 58730108--58730156 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
58730098 CTTTTCTCAC
* * *
58730108 ATTATTATTTTGAACTTATTT
1 ATTATCATTTTCAAATTATTT
58730129 ATTATCATTTTCAAATTATTT
1 ATTATCATTTTCAAATTATTT
58730150 -TTA-CATT
1 ATTATCATT
58730157 CTATTTTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 4 0.16
20 3 0.12
21 18 0.72
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTATCATTTTCAAATTATTT
Found at i:58731033 original size:25 final size:25
Alignment explanation
Indices: 58731005--58731058 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
58730995 ATACATGTAT
*
58731005 GCTCACTCAAGCTGTAAATCGGTAC
1 GCTCACACAAGCTGTAAATCGGTAC
* * *
58731030 GCTCTCACGAGCTGTAAATCGGTAT
1 GCTCACACAAGCTGTAAATCGGTAC
58731055 GCTC
1 GCTC
58731059 TCACGAGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (25 bp):
GCTCACACAAGCTGTAAATCGGTAC
Found at i:58731059 original size:25 final size:25
Alignment explanation
Indices: 58731014--58731065 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
58731004 TGCTCACTCA
58731014 AGCTGTAAATCGGTACGCTCTCACG
1 AGCTGTAAATCGGTACGCTCTCACG
*
58731039 AGCTGTAAATCGGTATGCTCTCACG
1 AGCTGTAAATCGGTACGCTCTCACG
58731064 AG
1 AG
58731066 TTATGGGTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (25 bp):
AGCTGTAAATCGGTACGCTCTCACG
Found at i:58733438 original size:25 final size:25
Alignment explanation
Indices: 58733410--58733467 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
58733400 ACAGCTAAGA
58733410 GAGTGATTCGGTATGTCAAAGACAC
1 GAGTGATTCGGTATGTCAAAGACAC
*
58733435 GAGTGATTCGGTATGTCAAAGGCAC
1 GAGTGATTCGGTATGTCAAAGACAC
*
58733460 AAGTGATT
1 GAGTGATT
58733468 TTGGTGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (25 bp):
GAGTGATTCGGTATGTCAAAGACAC
Found at i:58745434 original size:42 final size:42
Alignment explanation
Indices: 58745338--58745416 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
58745328 ACGACCTTGC
*
58745338 GCAC-AGG-CGTGTGTGGCTCTTTCGAGAGTTACATGGCCCG
1 GCACAAGGACGTGTGTGGCTATTTCGAGAGTTACATGGCCCG
*
58745378 GCACAAGGGCGTGTGTGGCTATTTCGAGAGTTACATGGC
1 GCACAAGGACGTGTGTGGCTATTTCGAGAGTTACATGGC
58745417 TTTGCACACG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
40 4 0.11
41 3 0.08
42 29 0.81
ACGTcount: A:0.18, C:0.22, G:0.35, T:0.25
Consensus pattern (42 bp):
GCACAAGGACGTGTGTGGCTATTTCGAGAGTTACATGGCCCG
Found at i:58749255 original size:12 final size:12
Alignment explanation
Indices: 58749235--58749328 Score: 57
Period size: 12 Copynumber: 7.8 Consensus size: 12
58749225 CTGCTCCTTG
*
58749235 ATCAGCTCCTAA
1 ATCATCTCCTAA
* **
58749247 ATCTTCTCCTTT
1 ATCATCTCCTAA
58749259 ATCATCTCCTAA
1 ATCATCTCCTAA
* *
58749271 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
58749283 ATCAGCTCCTAA
1 ATCATCTCCTAA
* *
58749295 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
58749307 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
58749319 ATCTTCTCCT
1 ATCATCTCCT
58749329 GACAGCCTTT
Statistics
Matches: 58, Mismatches: 20, Indels: 8
0.67 0.23 0.09
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.21, C:0.38, G:0.03, T:0.37
Consensus pattern (12 bp):
ATCATCTCCTAA
Found at i:58749262 original size:24 final size:24
Alignment explanation
Indices: 58749223--58749328 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
58749213 ACCGGCCAAC
*
58749223 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* *
58749248 TCTTCTCCTTTATCATCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
58749272 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
58749296 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
58749320 TCTTCTCCT
1 TCCTCTCCT
58749329 GACAGCCTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 70 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.38
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:58754340 original size:15 final size:15
Alignment explanation
Indices: 58754320--58754349 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58754310 AATATGAAAA
58754320 ATATGTTTTGGATTG
1 ATATGTTTTGGATTG
*
58754335 ATATGTTTTGTATTG
1 ATATGTTTTGGATTG
58754350 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTG
Found at i:58754974 original size:45 final size:44
Alignment explanation
Indices: 58754925--58755058 Score: 134
Period size: 45 Copynumber: 3.1 Consensus size: 44
58754915 TAGGATTTCC
58754925 TATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATCGA
1 TATATGTGTT-TCGTGTAAGACCACGTCTGGGACATTGGCATCGA
* * * * * *
58754970 TATATGTGGTTACATGTAAGACCATGTCTAGAACATCGGCATCG-
1 TATATGT-GTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGA
*
58755014 TAT-T-TGATTT-GTGTAAGACC-CTGTCTGGGACAGTGGCATCGA
1 TATATGTG-TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGA
58755056 TAT
1 TAT
58755059 GTGATAGCAT
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
41 25 0.35
42 6 0.08
43 1 0.01
44 3 0.04
45 34 0.47
46 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (44 bp):
TATATGTGTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGA
Found at i:58755052 original size:41 final size:42
Alignment explanation
Indices: 58754937--58755076 Score: 117
Period size: 41 Copynumber: 3.3 Consensus size: 42
58754927 TATGTGTTCT
*
58754937 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATATGTGGTTA
1 CGTGTAAGACC-CTGTCTGGGACA-TGGCATCGATAT-T-TGATTA
* * * *
58754982 CATGTAAGACCATGTCTAGAACATCGGCATCG-TATTTGATT-
1 CGTGTAAGACCCTGTCTGGGACAT-GGCATCGATATTTGATTA
* *
58755023 TGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGA-TA
1 CGTGTAAGACCCTGTCTGGGACA-TGGCATCGATATTTGATTA
*
58755065 GCATGTAAGACC
1 -CGTGTAAGACC
58755077 ACGTTTGGGA
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
41 26 0.34
42 11 0.14
43 10 0.13
44 4 0.05
45 25 0.33
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCCTGTCTGGGACATGGCATCGATATTTGATTA
Done.