Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 173 of 311
Found at i:58774029 original size:39 final size:40
Alignment explanation
Indices: 58773972--58774052 Score: 146
Period size: 39 Copynumber: 2.0 Consensus size: 40
58773962 GGCGTGTTAT
*
58773972 TGTTACCTGAGGTGTAAAGTTTGAGTCCT-GTATGCGCAA
1 TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
58774011 TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
1 TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
58774051 TG
1 TG
58774053 GAGTGTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 28 0.70
40 12 0.30
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (40 bp):
TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
Found at i:58774443 original size:43 final size:42
Alignment explanation
Indices: 58774395--58774542 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 42
58774385 CCTATCGATT
58774395 TTCTTCTCTCATTCTCTCCATTGGTTTTGCTTTGGCCGAATAC
1 TTCTTCTCTC-TTCTCTCCATTGGTTTTGCTTTGGCCGAATAC
* * * * **
58774438 TTCTTCTTCTCTCCCTTTCTCAATCGGTTTTACTTTGGTTGAATAC
1 TTCTTC-TCTCT---TCTCTCCATTGGTTTTGCTTTGGCCGAATAC
* *
58774484 TTTTTTTCTC-TCTCTCTCAGTTGGTTTTGCTTTGGCCGAATAC
1 TTCTTCTCTCTTCTCTC-CA-TTGGTTTTGCTTTGGCCGAATAC
58774527 TTCTTCT-TCTTCTCTC
1 TTCTTCTCTCTTCTCTC
58774543 TCTCAGTCGG
Statistics
Matches: 82, Mismatches: 16, Indels: 14
0.73 0.14 0.12
Matches are distributed among these distances:
41 5 0.06
42 3 0.04
43 37 0.45
44 4 0.05
45 4 0.05
46 29 0.35
ACGTcount: A:0.10, C:0.27, G:0.12, T:0.51
Consensus pattern (42 bp):
TTCTTCTCTCTTCTCTCCATTGGTTTTGCTTTGGCCGAATAC
Found at i:58774543 original size:43 final size:43
Alignment explanation
Indices: 58774395--58774556 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 43
58774385 CCTATCGATT
58774395 TTCTTCTCTCATTCTCTCCATTGGTTTTGCTTTGGCCGAATACTTC
1 TTCTTCTCTC--TCTCT-CATTGGTTTTGCTTTGGCCGAATACTTC
* * * **
58774441 TTCTTCTCTCCCTTTCTCAATCGGTTTTACTTTGGTTGAATACTT-
1 TTCTTCTCT--CTCTCTC-ATTGGTTTTGCTTTGGCCGAATACTTC
*
58774486 TTTTTCTCTCTCTCTCAGTTGGTTTTGCTTTGGCCGAATACTTC
1 TTCTTCTCTCTCTCTCA-TTGGTTTTGCTTTGGCCGAATACTTC
*
58774530 TTCTTCTTCTCTCTCTCAGTCGGTTTT
1 TTCTTC-TCTCTCTCTCA-TTGGTTTT
58774557 AGCAATCCCT
Statistics
Matches: 97, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
42 1 0.01
43 27 0.28
44 5 0.05
45 28 0.29
46 35 0.36
48 1 0.01
ACGTcount: A:0.10, C:0.27, G:0.13, T:0.51
Consensus pattern (43 bp):
TTCTTCTCTCTCTCTCATTGGTTTTGCTTTGGCCGAATACTTC
Found at i:58774556 original size:45 final size:45
Alignment explanation
Indices: 58774417--58774556 Score: 185
Period size: 43 Copynumber: 3.1 Consensus size: 45
58774407 TCTCTCCATT
* * *
58774417 GGTTTTGCTTTGGCCGAATACTTCTTCTTCTCTCCCTTTCTCAATC
1 GGTTTTGCTTTGGCCGAATACTTCTTCTTCT-TCTCTCTCTCAGTC
* ** * *
58774463 GGTTTTACTTTGGTTGAATACTT-TTTTTC-TCTCTCTCTCAGTT
1 GGTTTTGCTTTGGCCGAATACTTCTTCTTCTTCTCTCTCTCAGTC
58774506 GGTTTTGCTTTGGCCGAATACTTCTTCTTCTTCTCTCTCTCAGTC
1 GGTTTTGCTTTGGCCGAATACTTCTTCTTCTTCTCTCTCTCAGTC
58774551 GGTTTT
1 GGTTTT
58774557 AGCAATCCCT
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
43 30 0.38
44 5 0.06
45 24 0.30
46 20 0.25
ACGTcount: A:0.10, C:0.25, G:0.15, T:0.50
Consensus pattern (45 bp):
GGTTTTGCTTTGGCCGAATACTTCTTCTTCTTCTCTCTCTCAGTC
Found at i:58778055 original size:42 final size:43
Alignment explanation
Indices: 58777955--58778111 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
58777945 TGTGATTTCA
** * * * *
58777955 TGTAAGACCACATCTGGGACGTTAGCATCGATTTGA-GATTTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATAT-ATGA-TTACG
*
58777999 TGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACG
* * * *
58778041 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACG
*
58778084 TGTAAG-GCATCGTCTGGGACATTGGCAT
1 TGTAAGACCAT-GTCTGGGACATTGGCAT
58778112 TGTACGATGA
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 33 0.35
43 37 0.39
44 25 0.26
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACG
Found at i:58779240 original size:30 final size:30
Alignment explanation
Indices: 58779187--58779243 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
58779177 ATGGCTATGA
* *
58779187 CACACGGGCGTGTGGACTGCCCATGTGCCT
1 CACACAGGCGTGTGGACTACCCATGTGCCT
**
58779217 CACACAGGCGTGTGGTTTACCCATGTG
1 CACACAGGCGTGTGGACTACCCATGTG
58779244 GAAGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (30 bp):
CACACAGGCGTGTGGACTACCCATGTGCCT
Found at i:58782581 original size:42 final size:41
Alignment explanation
Indices: 58782472--58782584 Score: 113
Period size: 44 Copynumber: 2.7 Consensus size: 41
58782462 TTCCGCTATG
***
58782472 TGATTTTGTGTAAGACCAC-GTCTGGGACATTGGCATCGACT
1 TGATTTTGTGTAAGACC-CTGTCTGGGACATCAACATCGACT
* *
58782513 TGAGATTTACGTGTAAGACCATGTCTGGGACATCAACATCGTA-T
1 T--GATTT-TGTGTAAGACCCTGTCTGGGACATCAACATCG-ACT
58782557 ATGATTTTGTGTAAGACCCTGTCTGGGA
1 -TGATTTTGTGTAAGACCCTGTCTGGGA
58782585 TAGTGGCATC
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.02
42 19 0.32
43 10 0.17
44 27 0.46
45 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
TGATTTTGTGTAAGACCCTGTCTGGGACATCAACATCGACT
Found at i:58789374 original size:13 final size:13
Alignment explanation
Indices: 58789356--58789380 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58789346 TATGTGATAT
58789356 GTGTGAAAATTTC
1 GTGTGAAAATTTC
58789369 GTGTGAAAATTT
1 GTGTGAAAATTT
58789381 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:58790706 original size:32 final size:32
Alignment explanation
Indices: 58790669--58790733 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
58790659 GTATCCTTAT
58790669 TGATTCCGAATAGTTCAACGTGAAATATTGAG
1 TGATTCCGAATAGTTCAACGTGAAATATTGAG
58790701 TGATTCCGAATAGTTCAACGTGAAATATTGAG
1 TGATTCCGAATAGTTCAACGTGAAATATTGAG
58790733 T
1 T
58790734 TAAGATCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (32 bp):
TGATTCCGAATAGTTCAACGTGAAATATTGAG
Found at i:58794672 original size:24 final size:24
Alignment explanation
Indices: 58794645--58794690 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
58794635 GAATTTCACA
*
58794645 TTCAAAT-CAGCACACTTAGTGCCT
1 TTCAAATAC-GCACACGTAGTGCCT
*
58794669 TTCAACTACGCACACGTAGTGC
1 TTCAAATACGCACACGTAGTGC
58794691 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (24 bp):
TTCAAATACGCACACGTAGTGCCT
Found at i:58801211 original size:46 final size:46
Alignment explanation
Indices: 58801139--58801352 Score: 184
Period size: 46 Copynumber: 4.5 Consensus size: 46
58801129 TGATATGTGT
58801139 GCTAGTGTAAGACATGTTTGGGACATGCATCGAC-CACATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGACACA-ATTATGAGA
* * ** * *
58801185 GCTAGTGTAAGACATGTTTGGTACATGCATCGGCATTGA-GACGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGACA-CAATTATGAGA
* * * *
58801231 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGA-TATGCA-A
1 GCTAGTGTAAGACATGTTTGGGACATGCATC-GACAC-A-ATTATG-AGA
* *
58801279 GCTAGTGTAAGACATGTCTGGGACATAGCATCGACACCAATAGATGAGA
1 GCTAGTGTAAGACATGTTTGGGACAT-GCATCGACA-CAAT-TATGAGA
* * *
58801328 GCCAGTGTAAGACCTGTCTGGGACA
1 GCTAGTGTAAGACATGTTTGGGACA
58801353 CGGCATCAGC
Statistics
Matches: 136, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
46 65 0.48
47 4 0.03
48 33 0.24
49 34 0.25
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGACACAATTATGAGA
Found at i:58801338 original size:49 final size:47
Alignment explanation
Indices: 58801139--58801411 Score: 227
Period size: 49 Copynumber: 5.7 Consensus size: 47
58801129 TGATATGTGT
*
58801139 GCTAGTGTAAGACATGTTTGGGACATGCATCGA-CCACAT-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCCA-ATATATGAGA
* * * * * *
58801185 GCTAGTGTAAGACATGTTTGGTACATGCATCG--GCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCCAAT-ATATGAGA
* * * *
58801231 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACC-CAATATATG-AGA
*
58801279 GCTAGTGTAAGACATGTCTGGGACATAGCATCGACACCAATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC-CCAATATATGAGA
* * * * *
58801328 GCCAGTGTAAGACCTGTCTGGGACACGGCATC-AGCCTCGATATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACA-TGCATCGA-CC-CAATATATGAGA
* *
58801377 G-TCAGTGTAAGACCTGTCTGGGACAAGGCATCGAC
1 GCT-AGTGTAAGACATGTCTGGGAC-ATGCATCGAC
58801412 TTTGATATGC
Statistics
Matches: 186, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 65 0.35
48 32 0.17
49 83 0.45
50 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCCAATATATGAGA
Found at i:58801388 original size:98 final size:97
Alignment explanation
Indices: 58801227--58801411 Score: 257
Period size: 98 Copynumber: 1.9 Consensus size: 97
58801217 GCATTGAGAC
* * * *
58801227 GAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATGCAAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGACAGGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGAC
58801292 ATGTCTGGGACATA-GCATCGACACCAATAGAT
66 ATGTCTGGGACA-AGGCATCGACACCAATAGAT
* * *
58801324 GAGAGCCAGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATATATGAAAG-TCAGTGTAAG
1 GAGAGCCAGTGTAAGACATGTCTAGGACA-GGCATCAGCCTCGAGATATGAAAGCT-AGTGTAAG
*
58801388 ACCTGTCTGGGACAAGGCATCGAC
64 ACATGTCTGGGACAAGGCATCGAC
58801412 TTTGATATGC
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
97 28 0.36
98 49 0.64
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (97 bp):
GAGAGCCAGTGTAAGACATGTCTAGGACAGGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGAC
ATGTCTGGGACAAGGCATCGACACCAATAGAT
Found at i:58801419 original size:49 final size:49
Alignment explanation
Indices: 58801234--58801449 Score: 192
Period size: 49 Copynumber: 4.4 Consensus size: 49
58801224 GACGAGAGCT
* * * * * * *
58801234 AGTGTAAGACATGTCTAGGAC-ATGCATCGGCCTCGAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACAAGGCATCGACCTCGATATATGAAAGCC
* * * *
58801282 AGTGTAAGACATGTCTGGGACATA-GCATCGACAC-CAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACA-AGGCATCGAC-CTCGATATATGAAAGCC
* *
58801331 AGTGTAAGACCTGTCTGGGACACGGCATC-AGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACAAGGCATCGA-CCTCGATATATGAAAGCC
* * **
58801380 AGTGTAAGACCTGTCTGGGACAAGGCATCGACTTTG--ATATGCTAGCC
1 AGTGTAAGACCTGTCTGGGACAAGGCATCGACCTCGATATATGAAAGCC
*
58801427 AGTGTAAGACCATGTTTGGGACA
1 AGTGTAAGACC-TGTCTGGGACA
58801450 TGGCGTCGGC
Statistics
Matches: 139, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
47 19 0.14
48 32 0.23
49 85 0.61
50 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACAAGGCATCGACCTCGATATATGAAAGCC
Found at i:58805616 original size:41 final size:41
Alignment explanation
Indices: 58805512--58805619 Score: 146
Period size: 41 Copynumber: 2.6 Consensus size: 41
58805502 CTTTATGCTT
* * * * *
58805512 AGCAGGCTTTGTGCCGGTGTATAATTTCAGGCCTATTGCCT
1 AGCAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
*
58805553 AGTAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
1 AGCAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
58805594 AGCAGGCTCTT-TGCCGGTGTATTATA
1 AGCAGGCT-TTATGCCGGTGTATTATA
58805620 GTAGGCTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 57 0.97
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.34
Consensus pattern (41 bp):
AGCAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
Found at i:58805882 original size:18 final size:18
Alignment explanation
Indices: 58805859--58805920 Score: 83
Period size: 18 Copynumber: 3.4 Consensus size: 18
58805849 GATTTATGAG
58805859 TATGTATATATGAATGCA
1 TATGTATATATGAATGCA
*
58805877 TATGTATA-ATGTTATG-A
1 TATGTATATATG-AATGCA
58805894 GTATGTATATATGAATGCA
1 -TATGTATATATGAATGCA
58805913 TATGTATA
1 TATGTATA
58805921 ATCGATTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 4 0.11
18 30 0.79
19 4 0.11
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.42
Consensus pattern (18 bp):
TATGTATATATGAATGCA
Found at i:58805943 original size:36 final size:36
Alignment explanation
Indices: 58805852--58805922 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
58805842 AAAGCTTGAT
58805852 TTATGAGTATGTATATATGAATGCATATGTATAATG
1 TTATGAGTATGTATATATGAATGCATATGTATAATG
58805888 TTATGAGTATGTATATATGAATGCATATGTATAAT
1 TTATGAGTATGTATATATGAATGCATATGTATAAT
58805923 CGATTATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.42
Consensus pattern (36 bp):
TTATGAGTATGTATATATGAATGCATATGTATAATG
Found at i:58808003 original size:15 final size:15
Alignment explanation
Indices: 58807975--58808018 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
58807965 TACAGTATTG
58807975 TATCTTGAGATTTCTC
1 TATCTTG-GATTTCTC
*
58807991 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
58808006 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
58808019 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 9 0.35
16 7 0.27
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:58810648 original size:48 final size:46
Alignment explanation
Indices: 58810489--58810652 Score: 195
Period size: 46 Copynumber: 3.5 Consensus size: 46
58810479 TATGTGTGCG
** * * * * *
58810489 AGTGTAAGAGTTGTCTGTGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGTATGAGAGCT
* *
58810535 AGTGTAAGACATGTCTGGGACATGCATCGGCATTTAG-ATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-CTCAGTATGAGAGCT
*
58810581 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-AG-TATGAGAGCT
*
58810629 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
58810653 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.01
46 68 0.67
47 1 0.01
48 31 0.31
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGTATGAGAGCT
Found at i:58810677 original size:92 final size:91
Alignment explanation
Indices: 58810480--58810696 Score: 233
Period size: 92 Copynumber: 2.4 Consensus size: 91
58810470 TTCGGGTGAT
** * * *
58810480 ATGTGTGCGAGTGTAAGAGTTGTCTGTGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGAC
1 ATGTGTGCGAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAAAGCCAGTGTAAGAC
*
58810545 ATGTCTGGGACATGCATCGGCATTTAG
66 ATGTCTGGGACATGCATCAGCA-TTAG
* * * * * *
58810572 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGAAAGCTAGTGTAAG
1 ATGTGTGCGAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-ATATGAAAGCCAGTGTAAG
* *
58810637 ACCTGTCTGGGACATGGCGTCAGC-TT-G
64 ACATGTCTGGGACAT-GCATCAGCATTAG
*
58810664 ATGTGTGTC-AGTGTAAGACCTGTCTGGGACATG
1 ATGTGTG-CGAGTGTAAGACATGTCTGGGACATG
58810697 GCGTCAGCTT
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
92 64 0.62
93 4 0.04
94 30 0.29
95 6 0.06
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (91 bp):
ATGTGTGCGAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAAAGCCAGTGTAAGAC
ATGTCTGGGACATGCATCAGCATTAG
Found at i:58810686 original size:44 final size:46
Alignment explanation
Indices: 58810534--58810842 Score: 233
Period size: 44 Copynumber: 6.7 Consensus size: 46
58810524 TTATGAGAGC
* * * *
58810534 CAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTTAGATGAGA-G-
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGC-GTT-GATGTGATGT
* * * * * *
58810579 CTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGAAAG-
1 C-AGTGTAAGACCTGTCTGGGACATGGCATCAGCGT--TGATGTG-ATGT
*
58810627 CTAGTGTAAGACCTGTCTGGGACATGGCGTCAGC-TTGATGTG-TGT
1 C-AGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGATGTGATGT
*
58810672 CAGTGTAAGACCTGTCTGGGACATGGCGTCAGC-TTGATGTG-TGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGATGTGATGT
* * * * *
58810716 CAGTGTAAGACCTATCTGGGACACGGCATCGGCGTTGGTATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTT-G-ATGTG-ATGT
* * * *
58810765 CAGTGTAAGACCTGTCTGGGATATGGCATC-GACTTTGATGTGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAG-CGTTGATGTGAT-GT
*
58810812 CAGTGTAAGACCTTCTCTGGGACATGGCATC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATC
58810843 GACATTTTAC
Statistics
Matches: 223, Mismatches: 26, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
44 73 0.33
45 5 0.02
46 41 0.18
47 22 0.10
48 44 0.20
49 38 0.17
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (46 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGATGTGATGT
Found at i:58810772 original size:137 final size:140
Alignment explanation
Indices: 58810581--58810839 Score: 352
Period size: 137 Copynumber: 1.9 Consensus size: 140
58810571 GATGAGAGCT
* *
58810581 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTG
1 AGTGTAAGACATATCTGGGACAGGCATCGGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTG
* * *
58810646 GGACATGGCGTC-AGC-TTGATGTG-T-GTCAGTGTAAGACC-TGTCTGGGACATGGCGTCAGCT
66 GGACATGGCATCGA-CTTTGATGTGCTAGCCAGTGTAAGACCTTCTCTGGGACATGGCGTCAGCT
58810706 TGATGTGTGTC
130 TGATGTGTGTC
* * *
58810717 AGTGTAAGACCTATCTGGGACACGGCATCGGCGTTG-GTATATGAAAG-TCAGTGTAAGACCTGT
1 AGTGTAAGACATATCTGGGACA-GGCATCGGCCTCGAG-ATATGAAAGCT-AGTGTAAGACCTGT
*
58810780 CTGGGATATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCTTCTCTGGGACATGGC
63 CTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCTTCTCTGGGACATGGC
58810840 ATCGACATTT
Statistics
Matches: 106, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
136 22 0.21
137 47 0.44
138 9 0.08
139 1 0.01
140 13 0.12
141 14 0.13
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (140 bp):
AGTGTAAGACATATCTGGGACAGGCATCGGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTG
GGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCTTCTCTGGGACATGGCGTCAGCTT
GATGTGTGTC
Found at i:58810783 original size:93 final size:97
Alignment explanation
Indices: 58810670--58810843 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 97
58810660 CTTGATGTGT
* *
58810670 GTCAGTGTAAGACCTGTCTGGGACATGGCGTC-AGC-TTGATGTG-T-GTCAGTGTAAGACC-TA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTTGATGTGCTAGCCAGTGTAAGACCTTA
58810730 TCTGGGACACGGCATCGGCGTTGGTATATGAAA
65 TCTGGGACACGGCATCGGCGTTGGTATATGAAA
* *
58810763 GTCAGTGTAAGACCTGTCTGGGATATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCTTCT
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCTTAT
*
58810828 CTGGGACATGGCATCG
66 CTGGGACACGGCATCG
58810844 ACATTTTACC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
93 31 0.44
94 9 0.13
95 1 0.01
96 13 0.18
97 17 0.24
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (97 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCTTAT
CTGGGACACGGCATCGGCGTTGGTATATGAAA
Found at i:58821997 original size:20 final size:20
Alignment explanation
Indices: 58821956--58821998 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
58821946 AATAGGAGGA
* *
58821956 AAGGGAAAGAAAGGGGAAAG
1 AAGGGAAAGAAAAGAGAAAG
58821976 AAGGG-AAGAAAAGAGAAGAG
1 AAGGGAAAGAAAAGAGAA-AG
58821996 AAG
1 AAG
58821999 AAGAGAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (20 bp):
AAGGGAAAGAAAAGAGAAAG
Found at i:58822308 original size:12 final size:12
Alignment explanation
Indices: 58822291--58822315 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
58822281 AGTGTTCCCA
58822291 GGCCGTGTGCAC
1 GGCCGTGTGCAC
58822303 GGCCGTGTGCAC
1 GGCCGTGTGCAC
58822315 G
1 G
58822316 TTCGTTCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.32, G:0.44, T:0.16
Consensus pattern (12 bp):
GGCCGTGTGCAC
Found at i:58833421 original size:47 final size:47
Alignment explanation
Indices: 58833350--58833574 Score: 237
Period size: 47 Copynumber: 4.8 Consensus size: 47
58833340 TGTGTAAGGT
*
58833350 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * *
58833397 GTCGATGCCATGTCCCATACATGGTCTTACACTGACT-ATCATCT-AGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCA--A
* * * *
58833445 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AA
** * * *
58833491 GCCGATG-CATGTCCCAGAC-TTATCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
*
58833536 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
58833575 TCATAATATG
Statistics
Matches: 148, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 61 0.41
47 64 0.43
48 21 0.14
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:58833549 original size:93 final size:94
Alignment explanation
Indices: 58833349--58833574 Score: 264
Period size: 93 Copynumber: 2.4 Consensus size: 94
58833339 ATGTGTAAGG
* *
58833349 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCA
* * *
58833414 TACATGGTCTTACACTGACTATCATCTAG
66 GACATGATCTTACACTGACTATCATCTAA
* * * *
58833443 TAGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATG-CATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AAGCCGATGCCATGTCC
* * *
58833505 CAGAC-TTATCTTACACT-AGCTCTCGTCTCAA
64 CAGACATGATCTTACACTGA-CTATCATCT-AA
*
58833536 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
58833575 TCATAATATG
Statistics
Matches: 111, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 22 0.20
93 47 0.42
94 35 0.32
95 6 0.05
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCA
GACATGATCTTACACTGACTATCATCTAA
Found at i:58833559 original size:140 final size:141
Alignment explanation
Indices: 58833350--58833615 Score: 351
Period size: 140 Copynumber: 1.9 Consensus size: 141
58833340 TGTGTAAGGT
* * * * * *
58833350 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAT
1 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCACATCTCAAGCCAATGCCATGTCCCAG
*
58833415 ACATGGTCTTACACTGACTATCAT-CTAGTAGCT-GATGCATGTCCCAGACATGTCTTACACTGG
66 ACATGGTCTTACACTGACTATCATAATA-T-GCTCGATGCATGTCCCAGACATGTCTTACACTGG
58833478 CTTACGTCTCGAG
129 CTTACGTCTCGAG
* * *
58833491 GCCGATG-CATGTCCCAGAC-TTATCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCACATCTCAA-GCCAATGCCATGTCCCA
* * * *
58833554 GACATGGTCTTACACTGGCTCTCATAATATGGTCGATGCATGTCGCAGACATGTCTTACACT
65 GACATGGTCTTACACTGACTATCATAATATGCTCGATGCATGTCCCAGACATGTCTTACACT
58833616 AGCCAACAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
139 23 0.21
140 76 0.70
141 9 0.08
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCACATCTCAAGCCAATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATAATATGCTCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:58833591 original size:94 final size:91
Alignment explanation
Indices: 58833349--58833618 Score: 269
Period size: 94 Copynumber: 2.9 Consensus size: 91
58833339 ATGTGTAAGG
* * *
58833349 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-AGGTCGATG-CATGTCCCA
* * *
58833414 TACATGGTCTTACACT-GACTATCATCTAG
64 GAC-TTGTCTTACACTAG-CTATCATCTAA
* * *
58833443 TAGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCGAGGCCGATGCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCATCTAGGTCGATGCATGTCC
* * *
58833505 CAGACTTATCTTACACTAGCTCTCGTCTCAA
62 CAGACTTGTCTTACACTAGCTATCATCT-AA
* * *
58833536 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGTCGATGCATGTCGCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTA-GGTCGATGCATGTCCCA
*
58833601 GACATGTCTTACACTAGC
64 GACTTGTCTTACACTAGC
58833619 CAACAACAAC
Statistics
Matches: 145, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
91 2 0.01
92 24 0.17
93 43 0.30
94 66 0.46
95 9 0.06
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (91 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTAGGTCGATGCATGTCCCAGA
CTTGTCTTACACTAGCTATCATCTAA
Found at i:58833596 original size:47 final size:47
Alignment explanation
Indices: 58833350--58833615 Score: 235
Period size: 47 Copynumber: 5.7 Consensus size: 47
58833340 TGTGTAAGGT
* *
58833350 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-ATA
* * * *
58833397 GTCGATGCCATGTCCCATACATGGTCTTACACTGACTATCATCTAGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTA-TA
* * **
58833445 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTATA
** * *
58833490 GGCCGATG-CATGTCCCAGAC-TTATCTTACACTAGCTCTCGTCTCA-A
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-ATA
* * *
58833536 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTATA
* *
58833585 GTCGATG-CATGTCGCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
58833616 AGCCAACAAC
Statistics
Matches: 180, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 70 0.39
47 77 0.43
48 29 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATA
Found at i:58837016 original size:23 final size:23
Alignment explanation
Indices: 58836986--58837032 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
58836976 TGACCTCATT
58836986 AAGCCAAAATTCACTCTTACTGA
1 AAGCCAAAATTCACTCTTACTGA
58837009 AAGCCAAAATTCACTCTTACTGA
1 AAGCCAAAATTCACTCTTACTGA
58837032 A
1 A
58837033 CTTGGCATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (23 bp):
AAGCCAAAATTCACTCTTACTGA
Found at i:58839054 original size:28 final size:28
Alignment explanation
Indices: 58839014--58839083 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
58839004 GCAATCAAAT
* *
58839014 ATGGCACTCAGTGTATGAAATATTGAAA
1 ATGGCACTTAGTGTACGAAATATTGAAA
* * *
58839042 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAAA
*
58839070 ATGACACTTAGTGT
1 ATGGCACTTAGTGT
58839084 GAAAAATATC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAAA
Found at i:58839092 original size:28 final size:28
Alignment explanation
Indices: 58839031--58839092 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
58839021 TCAGTGTATG
* **
58839031 AAATATTGAAAATGGCACTTAGTGTGCG
1 AAATATTGAAAATGACACTTAGTGTGAA
* *
58839059 AGATATTGAGAATGACACTTAGTGTGAA
1 AAATATTGAAAATGACACTTAGTGTGAA
58839087 AAATAT
1 AAATAT
58839093 CGAATGATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAAAATGACACTTAGTGTGAA
Found at i:58841690 original size:25 final size:25
Alignment explanation
Indices: 58841629--58841701 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
58841619 GGAGGAAGTG
58841629 CAAAAA-GGCTTTTGCCCCAGTTTAC
1 CAAAAAGGGC-TTTGCCCCAGTTTAC
* *
58841654 CGAAAAAGGGCTTTGCCCTAGTTTAT
1 C-AAAAAGGGCTTTGCCCCAGTTTAC
*
58841680 CAAAAAGGGCTTTACCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
58841702 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.48
26 19 0.45
27 3 0.07
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:58841960 original size:30 final size:31
Alignment explanation
Indices: 58841926--58842004 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
58841916 TATAGTAAAT
*
58841926 GCTTCGGCCCAGTGATATG-ATAATGAAAAG
1 GCTTCGGCCTAGTGATATGAATAATGAAAAG
* *
58841956 GCTTCGGCCTAGTGACATGAATAATGCAAAG
1 GCTTCGGCCTAGTGATATGAATAATGAAAAG
58841987 GCTTCGGCCTAGT-ATATG
1 GCTTCGGCCTAGTGATATG
58842005 TTGATATTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 21 0.48
31 23 0.52
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCTAGTGATATGAATAATGAAAAG
Found at i:58847475 original size:32 final size:31
Alignment explanation
Indices: 58847390--58847482 Score: 87
Period size: 32 Copynumber: 2.8 Consensus size: 31
58847380 TATGGGCCAT
*
58847390 ACTGTTATCTGAATAAGGTGCTCAGGCCCAGTTT
1 ACTGTTATCTGAAT--GG-GCTCAGGCCCAGTTC
* * * *
58847424 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTCAGGCCCAGT-TC
*
58847457 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTCAGGCCC
58847483 GATGGGCTTG
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
32 24 0.51
33 12 0.26
34 9 0.19
35 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTCAGGCCCAGTTC
Found at i:58849937 original size:39 final size:40
Alignment explanation
Indices: 58849780--58850004 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
58849770 GCTCCTCGTT
* *
58849780 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
58849820 CAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
58849860 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
58849900 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
58849939 CAAATGCCTTC-GGATCTTAATCCGGATATGGTTACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
58849980 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
58850005 CATCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 112 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:58849958 original size:119 final size:120
Alignment explanation
Indices: 58849782--58850004 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
58849772 TCCTCGTTCA
*
58849782 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
58849847 TTTGTAAC-TCGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATGGTAACTTAGCACAAA-GCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
58849902 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAATCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
58849964 ATATGGTTACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATGGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGA
58850005 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:58858492 original size:33 final size:34
Alignment explanation
Indices: 58858414--58858495 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 34
58858404 CTATGGGCCA
58858414 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTT
1 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTT
* * **
58858448 TAATGTAATCTGAA-AA-GGGCTCTGGCCCAGTAT
1 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-T
*
58858481 TACTATTATCTGAAT
1 TACTGTTATCTGAAT
58858496 GGGCTTAGGC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.33
33 14 0.36
34 12 0.31
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (34 bp):
TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTT
Found at i:58858507 original size:32 final size:31
Alignment explanation
Indices: 58858414--58858507 Score: 82
Period size: 32 Copynumber: 2.9 Consensus size: 31
58858404 CTATGGGCCA
*
58858414 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTT
1 TACTGTTATCTGAAT---GGGCTTAGGCCCAGTT
* * *
58858448 TAATGTAATCTGAAAAGGGCTCT-GGCCCAGTAT
1 TACTGTTATCTG-AATGGGCT-TAGGCCCAGT-T
*
58858481 TACTATTATCTGAATGGGCTTAGGCCC
1 TACTGTTATCTGAATGGGCTTAGGCCC
58858508 GATGGGCTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
31 1 0.02
32 25 0.52
33 10 0.21
34 10 0.21
35 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (31 bp):
TACTGTTATCTGAATGGGCTTAGGCCCAGTT
Found at i:58863336 original size:11 final size:11
Alignment explanation
Indices: 58863309--58863355 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
58863299 GACTTTGATA
58863309 TACATGAT-TG
1 TACATGATATG
*
58863319 GACATGATATG
1 TACATGATATG
58863330 TACATGATATG
1 TACATGATATG
58863341 T--ATGATATG
1 TACATGATATG
*
58863350 CACATG
1 TACATG
58863356 GTGTATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.26
10 7 0.23
11 16 0.52
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (11 bp):
TACATGATATG
Found at i:58863448 original size:25 final size:25
Alignment explanation
Indices: 58863405--58863475 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
58863395 GAGGAAGTGC
*
58863405 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
* *
58863431 AAAAGGGCTTTGACCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
58863456 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
58863476 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:58863488 original size:24 final size:24
Alignment explanation
Indices: 58863404--58863488 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 24
58863394 GGAGGAAGTG
*
58863404 CAAAAGGGCTTTTGCCCCAGTTTAC
1 CAAAAGGGC-TTTGCCCCAGTTTAT
*
58863429 CGAAAAGGGCTTTGACCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
58863454 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
58863478 TAAAAGAGGCT
1 CAAAAG-GGCT
58863489 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 32 0.60
26 8 0.15
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:58863729 original size:30 final size:31
Alignment explanation
Indices: 58863695--58863777 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
58863685 CGTATACAGT
58863695 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
58863725 AAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
58863756 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
58863778 TTGAGATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:58863760 original size:31 final size:30
Alignment explanation
Indices: 58863695--58863772 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
58863685 CGTATACAGT
*
58863695 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
* *
58863725 AAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
58863756 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
58863773 ATATGTTGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 21 0.49
31 22 0.51
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:58871754 original size:30 final size:29
Alignment explanation
Indices: 58871720--58871783 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
58871710 ATGAATCGGA
* *
58871720 AGCTTTGGCATTATGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
58871750 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
58871779 AGCTT
1 AGCTT
58871784 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:58875698 original size:39 final size:39
Alignment explanation
Indices: 58875644--58875730 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
58875634 CCGGCAATTT
58875644 GCCTGCTAGGTATAAACCCGAACTTAACACCAGCACGAG
1 GCCTGCTAGGTATAAACCCGAACTTAACACCAGCACGAG
* * * *
58875683 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCCGAACTTAACACCAGCACGAG
58875722 GCCTGCTAG
1 GCCTGCTAG
58875731 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCCGAACTTAACACCAGCACGAG
Found at i:58883076 original size:39 final size:39
Alignment explanation
Indices: 58883022--58883148 Score: 211
Period size: 39 Copynumber: 3.3 Consensus size: 39
58883012 CCGGTAATTT
* *
58883022 GCCTGCTAGGTATAAA-CTCGAACTTAACACCAGCACGAG
1 GCCTGCTAGGTATAAACCT-GAATTTATCACCAGCACGAG
*
58883061 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACGAG
58883100 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACGAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACGAG
58883139 GCCTGCTAGG
1 GCCTGCTAGG
58883149 CATTACGTCT
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
39 81 0.98
40 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACGAG
Found at i:58895050 original size:43 final size:42
Alignment explanation
Indices: 58894979--58895096 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
58894969 CGGAAAGCTC
* ** * *
58894979 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATATCCCAGACGTGGTCTTACATGAAATCAA
* * *
58895021 ATATTGATGCCACTGTCCCAGACAG-GGTCTTACATGAAATCAA
1 ATA-CGATGCCAATATCCCAGAC-GTGGTCTTACATGAAATCAA
*
58895064 ATACGATGCCAATATTCCAGACGTGGTCTTACA
1 ATACGATGCCAATATCCCAGACGTGGTCTTACA
58895097 CGAGAACACA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
41 1 0.02
42 27 0.43
43 34 0.54
44 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATACGATGCCAATATCCCAGACGTGGTCTTACATGAAATCAA
Found at i:58895085 original size:42 final size:43
Alignment explanation
Indices: 58894997--58895096 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
58894987 CCAACGTCCT
* * * *
58894997 AGACGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCC
1 AGACGTGGTCTTACATGAAATCAAATATCGATGCCAATATCCC
*
58895040 AGACAG-GGTCTTACATGAAATCAAATA-CGATGCCAATATTCC
1 AGAC-GTGGTCTTACATGAAATCAAATATCGATGCCAATATCCC
58895082 AGACGTGGTCTTACA
1 AGACGTGGTCTTACA
58895097 CGAGAACACA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.48
43 24 0.48
44 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (43 bp):
AGACGTGGTCTTACATGAAATCAAATATCGATGCCAATATCCC
Found at i:58905327 original size:40 final size:40
Alignment explanation
Indices: 58905228--58905418 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
58905218 TGGATGATAA
* * * * **
58905228 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
58905268 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
58905307 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
58905347 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
58905388 -CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
58905419 AGCTATATCC
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 33 0.24
40 102 0.74
41 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:58913321 original size:40 final size:40
Alignment explanation
Indices: 58913222--58913412 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
58913212 TGGATGATAA
* * * * **
58913222 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
58913262 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
58913301 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
58913341 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
58913381 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
58913413 AGCTATATCC
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 33 0.24
40 103 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:58924403 original size:15 final size:16
Alignment explanation
Indices: 58924378--58924407 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
58924368 TGAACCCTTG
58924378 GTAAGGTTATGATTGA
1 GTAAGGTTATGATTGA
58924394 GTAA-GTTATGATTG
1 GTAAGGTTATGATTG
58924408 TAAGATCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (16 bp):
GTAAGGTTATGATTGA
Found at i:58926144 original size:28 final size:28
Alignment explanation
Indices: 58926108--58926199 Score: 148
Period size: 28 Copynumber: 3.3 Consensus size: 28
58926098 TGACATACGT
58926108 CCGTGTCTATCACACGGCCATGACATGC
1 CCGTGTCTATCACACGGCCATGACATGC
*
58926136 CCGTGTCTATCACACGGCCATGACACGC
1 CCGTGTCTATCACACGGCCATGACATGC
* *
58926164 CCGTGTCTATCACATGGCCATGAGATGC
1 CCGTGTCTATCACACGGCCATGACATGC
*
58926192 CCATGTCT
1 CCGTGTCT
58926200 TAGCCCGTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.21, C:0.35, G:0.22, T:0.23
Consensus pattern (28 bp):
CCGTGTCTATCACACGGCCATGACATGC
Found at i:58927426 original size:46 final size:46
Alignment explanation
Indices: 58927376--58927546 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
58927366 ACATCTCATA
*
58927376 GCCGATGCATGTTCCAGACATGTCTTACACTGGCT-TATGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTA-GTCACGAG
* * * * * *
58927422 GCCGATGCATGTCCCAGACATGTCTCACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAGTCACGAG
* * * *
58927468 GTCGATGCCATGTCCCA-AGCATGGTCTTACACTGGCTCTCA-TAATGTG
1 GCCGATG-CATGTCCCAGA-CAT-GTCTTACACTGGCTCT-AGTCACGAG
58927516 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
58927547 AGCACACAAA
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
46 54 0.53
47 25 0.25
48 22 0.22
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAGTCACGAG
Found at i:58929922 original size:43 final size:43
Alignment explanation
Indices: 58929859--58929985 Score: 173
Period size: 43 Copynumber: 3.0 Consensus size: 43
58929849 GAGATATGTG
* * *
58929859 GCATCCAAGGTCATTAAGTGGTCCGAGTTCATTATGGATGCAA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
* **
58929902 GCATCTGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGTGA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
* * *
58929945 GCATCCGAGCTCGTTGAGTGGTCTGAGTTCATTGTGGATGC
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGC
58929986 GATGCCTGTG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
Found at i:58939027 original size:43 final size:43
Alignment explanation
Indices: 58938980--58939117 Score: 140
Period size: 42 Copynumber: 3.2 Consensus size: 43
58938970 TCCCAGATGT
*
58938980 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAG
* * * * *
58939023 GGTCTTACACGAAATCATATA-CGATGCAAATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAG
* *
58939065 GGTCTTACACGTAAATCACAA-ATTGATGCCAAC-GTCCTAGA-AG
1 GGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGACAG
58939108 TGGTCTTACA
1 -GGTCTTACA
58939118 TGAAAACACA
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
42 29 0.38
43 25 0.32
44 22 0.29
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAG
Found at i:58939061 original size:42 final size:43
Alignment explanation
Indices: 58938980--58939132 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
58938970 TCCCAGATGT
* * * *
58938980 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCAAATGTCCCAGACAG
* *
58939023 GGTCTTACACGAAATCATATA-CGATGCAAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCAAATGTCCCAGACAG
* * * *
58939065 GGTCTTACACGTAAATCACAA-ATTGATGCCAACGTCCTAGA-AG
1 GGTCTTACACG-AAATCA-AATATCGATGCAAATGTCCCAGACAG
* * *
58939108 TGGTCTTACATGAAAACACATATCG
1 -GGTCTTACACGAAATCAAATATCG
58939133 GATCCTATGT
Statistics
Matches: 89, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
42 30 0.34
43 34 0.38
44 25 0.28
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCAAATGTCCCAGACAG
Found at i:58942856 original size:46 final size:46
Alignment explanation
Indices: 58942797--58942960 Score: 192
Period size: 46 Copynumber: 3.5 Consensus size: 46
58942787 GCCCATAAAC
*
58942797 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
* * * *
58942843 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAGT
* *
58942890 GAACTCGGACTGAACTCAACGAGTTCGGGCATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
58942936 GAACTCGGACTCAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
58942961 TGGATGCTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 18
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 3 0.03
46 51 0.53
47 27 0.28
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
Found at i:58942954 original size:93 final size:93
Alignment explanation
Indices: 58942795--58942967 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
58942785 CCGCCCATAA
*
58942795 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
58942860 AACGAGTTCGGATGCCTAGTTACATTTC
66 AACGAGTTCGGATGCCTAGTTACATTTC
* *
58942888 ACGAACTCGGACTGAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
58942953 AACGAGTTTGGATGC
66 AACGAGTTCGGATGC
58942968 TCAACCATCC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGTTCGGATGCCTAGTTACATTTC
Found at i:58949080 original size:44 final size:43
Alignment explanation
Indices: 58949008--58949127 Score: 111
Period size: 44 Copynumber: 2.8 Consensus size: 43
58948998 TAGGATTTCG
* *
58949008 ATTTGTGTTATCGTGTAAGACCACGTCTGGGACGTTGGCATCA
1 ATTTGTGTTATCGTGTAAGACCACGTCTGGGACATTGACATCA
* *
58949051 ATTTGTGATTTAT-GTGTAATACCATGTCTGGGACATTGACATC-
1 ATTTGTG--TTATCGTGTAAGACCACGTCTGGGACATTGACATCA
* * * * *
58949094 GTATATGATATCATGTAAGACC-CTGTCTGGGACA
1 ATTTGTGTTATCGTGTAAGACCAC-GTCTGGGACA
58949128 GAGGCATCGA
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
41 3 0.05
42 18 0.29
43 11 0.18
44 26 0.42
45 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
ATTTGTGTTATCGTGTAAGACCACGTCTGGGACATTGACATCA
Found at i:58949121 original size:42 final size:43
Alignment explanation
Indices: 58949065--58949165 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
58949055 GTGATTTATG
* **
58949065 TGTAATACCATGTCTGGGACATTGACATCG-TATATGA-TATCA
1 TGTAAGACCATGTCTGGGACAGAGACATCGATATATGATTA-CA
* * *
58949107 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGAGACATCGATATATGATTACA
*
58949150 TGTAAGACCACGTCTG
1 TGTAAGACCATGTCTG
58949166 AGATGTTGGC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 25 0.51
43 22 0.45
44 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGACATCGATATATGATTACA
Found at i:58949165 original size:43 final size:43
Alignment explanation
Indices: 58949021--58949165 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 43
58949011 TGTGTTATCG
* **
58949021 TGTAAGACCACGTCTGGGAC-GTTGGCATCAAT-TTGTGATTTATG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-TGA-TTACA
* * * * *
58949065 TGTAATACCATGTCTGGGACATTGACATCG-TATATGA-TATCA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA-CA
*
58949107 TGTAAGACC-CTGTCTGGGACAGAGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTACA
58949150 TGTAAGACCACGTCTG
1 TGTAAGACCACGTCTG
58949166 AGATGTTGGC
Statistics
Matches: 80, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
41 2 0.03
42 24 0.30
43 26 0.32
44 28 0.35
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTACA
Found at i:58949177 original size:43 final size:43
Alignment explanation
Indices: 58949021--58949177 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
58949011 TGTGTTATCG
* **
58949021 TGTAAGACCACGTCTGGGACGTTGGCATCAAT-TTGTGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * * * *
58949065 TGTAATACCATGTCTGGGACATTGACATCG-TATATGA-TATCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA-CA
*
58949107 TGTAAGACC-CTGTCTGGGACAG-AGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
* *
58949150 TGTAAGACCACGTCTGAGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
58949178 TGTACAAGCT
Statistics
Matches: 88, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
41 2 0.02
42 24 0.27
43 33 0.38
44 29 0.33
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:58951348 original size:11 final size:11
Alignment explanation
Indices: 58951332--58951358 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
58951322 ATTAAAAGCA
58951332 AATGTTTTGAT
1 AATGTTTTGAT
58951343 AATGTTTTGAT
1 AATGTTTTGAT
58951354 AATGT
1 AATGT
58951359 GAAATTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (11 bp):
AATGTTTTGAT
Found at i:58964508 original size:40 final size:40
Alignment explanation
Indices: 58964414--58964594 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
58964404 TACTCGAATG
*
58964414 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
58964455 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
58964495 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * * * * * **
58964535 ATATCCGAGTTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
58964574 ATATCC-GGCTAAGCCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
58964595 ATGCTTGATT
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 12 0.10
39 16 0.14
40 61 0.52
41 28 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:58966224 original size:42 final size:42
Alignment explanation
Indices: 58966166--58966253 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
58966156 TCTCGATATA
* * *
58966166 ATATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
*
58966208 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
58966250 ATAT
1 ATAT
58966254 CCGGACTTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
Found at i:58971306 original size:46 final size:47
Alignment explanation
Indices: 58971210--58971422 Score: 158
Period size: 46 Copynumber: 4.6 Consensus size: 47
58971200 GTACCAATGC
*
58971210 CATGTCCCAGACATGGTCTTACACT-GAC--ACAT-TTCATGG-CTGATG
1 CATGTCCTAGACAT-GTCTTACACTAG-CTTACATCTTCA-GGTCTGATG
58971255 CATGTCCTAGACATGTCTTACACTAGCTTACATCTTCAGGTC-GATG
1 CATGTCCTAGACATGTCTTACACTAGCTTACATCTTCAGGTCTGATG
* ** * * *
58971301 CATGTCCTAGACATGTCTTATACTAGCGCAC-GCCTCA-ATGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTACATCTTCAGGT-CTGATG
* ** ** * *
58971347 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATGTGGGC-AATG
1 -CATGTCCTAGACAT-GTCTTACACTAGCT-TACATCTTCAGGTCTGATG
*
58971395 CATGTCCTAGACATTTCTTACACTAGCT
1 CATGTCCTAGACATGTCTTACACTAGCT
58971423 CATACAAGTG
Statistics
Matches: 135, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.09
45 19 0.14
46 55 0.41
47 31 0.23
48 16 0.12
49 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
CATGTCCTAGACATGTCTTACACTAGCTTACATCTTCAGGTCTGATG
Found at i:58971376 original size:94 final size:92
Alignment explanation
Indices: 58971248--58971421 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 92
58971238 ACATTTCATG
* ** * *
58971248 GCTGATGCATGTCCTAGACATGTCTTACACTAGCT-TACATCTTCAGGTCGATGCATGTCCTAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAATCAGGGCAATGCATGTCCTAGA
*
58971312 CATGTCTTATACTAGCGCACGCCTCAAT
65 CATGTCTTACACTAGCGCACGCCTCAAT
**
58971340 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGGCAATGCATGTCCTAG
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATCAGGGCAATGCATGTCCTAG
*
58971405 ACATTTCTTACACTAGC
64 ACATGTCTTACACTAGC
58971422 TCATACAAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 49 0.70
95 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (92 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATCAGGGCAATGCATGTCCTAGAC
ATGTCTTACACTAGCGCACGCCTCAAT
Found at i:58977516 original size:15 final size:16
Alignment explanation
Indices: 58977485--58977517 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
58977475 AACCAAAATA
*
58977485 AAAAAATAATAATAAT
1 AAAAAATAATAACAAT
58977501 AAAAAATAA-AACAAT
1 AAAAAATAATAACAAT
58977516 AA
1 AA
58977518 TTAAGTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATAATAACAAT
Found at i:58980697 original size:132 final size:129
Alignment explanation
Indices: 58980282--58980688 Score: 429
Period size: 131 Copynumber: 3.1 Consensus size: 129
58980272 GGCAACTCGC
* * * * * *
58980282 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAATGTCCCTTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCTTTA
** * * ** * * *
58980347 GAATTTCATTCATGTTTTCTAAAGACTCTTTAAAACGAAGGTAATACTCAATGTTTGGCAATTTG
66 GAATTTCACCCATG-TTTCTAAAGATTC-TAAAAAATAAGGTAATGCTCGATGATTGGCAATTTG
58980412 G
129 G
* * * * * *
58980413 GAGTCATGCCCTATCGTGCTGGGTTGTAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTA
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCTTTA
* * * * *
58980478 AAATTTCACCCATGTCTT-TAAAGATTCTATAAAATAAAGGTAATGTTCGATGGTTGGCAATTCG
66 GAATTTCACCCATGT-TTCTAAAGATTCTAAAAAAT-AAGGTAATGCTCGATGATTGGCAATT-T
58980542 GG
128 GG
* * *
58980544 GAATCGTGCCCTATCGTGCTGGCTTGCAATTTCTTGTTGGTTCAAAATAATCGAATATCCCCTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATAT-CCCTTT
* * * * *
58980609 AGAATTTCACCCATGTTTCCTAAAAATTCTAAAAAATAAGGCAATGCGCGATGATTAGAAATTTG
65 AGAATTTCACCCATGTTT-CTAAAGATTCTAAAAAATAAGGTAATGCTCGATGATTGGCAATTTG
58980674 AG
129 -G
58980676 GAATCGTGCCCTA
1 GAATCGTGCCCTA
58980689 CTATGCTGGG
Statistics
Matches: 225, Mismatches: 44, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
129 4 0.02
130 31 0.14
131 121 0.54
132 54 0.24
133 15 0.07
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (129 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCTTTA
GAATTTCACCCATGTTTCTAAAGATTCTAAAAAATAAGGTAATGCTCGATGATTGGCAATTTGG
Found at i:58980724 original size:132 final size:131
Alignment explanation
Indices: 58980419--58980727 Score: 293
Period size: 132 Copynumber: 2.4 Consensus size: 131
58980409 TTGGGAGTCA
* * * * * * * * *
58980419 TGCCCTATCGTGCTGGGTTGTAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAAAATTT
1 TGCCCTATCATGCTGGCTTGCAATTTCTCATTGGTACAAAATAATCGAATATCCCTTTAAAATTT
* * * ** * * * *
58980484 CACCCATGTCTTTAAAGATTCTATAAAATAAAGGTAATGTTCGATGGTTGGCAATTCGGGGAATC
66 CACCCATGTCTTTAAAAATTCTAAAAAATAAAGGCAATGCGCGATGATTAGAAATTCGAGGAATC
58980549 G
131 G
* ** * *
58980550 TGCCCTATCGTGCTGGCTTGCAATTTCTTGTTGGTTCAAAATAATCGAATATCCCCTTTAGAATT
1 TGCCCTATCATGCTGGCTTGCAATTTCTCATTGGTACAAAATAATCGAATAT-CCCTTTAAAATT
*
58980615 TCACCCATGT-TTCCTAAAAATTCTAAAAAAT-AAGGCAATGCGCGATGATTAGAAATTTGAGGA
65 TCACCCATGTCTT--TAAAAATTCTAAAAAATAAAGGCAATGCGCGATGATTAGAAATTCGAGGA
58980678 ATCG
128 ATCG
* * * *
58980682 TGCCCTA-CTATGCTGGGTTTCGATTTTCTCATTGG-ACTAAATAATC
1 TGCCCTATC-ATGCTGGCTTGC-AATTTCTCATTGGTACAAAATAATC
58980728 AGGCATCCTT
Statistics
Matches: 147, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
131 49 0.33
132 73 0.50
133 25 0.17
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (131 bp):
TGCCCTATCATGCTGGCTTGCAATTTCTCATTGGTACAAAATAATCGAATATCCCTTTAAAATTT
CACCCATGTCTTTAAAAATTCTAAAAAATAAAGGCAATGCGCGATGATTAGAAATTCGAGGAATC
G
Found at i:58983906 original size:23 final size:23
Alignment explanation
Indices: 58983877--58983923 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
58983867 AGAGCAAAGT
58983877 TTTATTTTTAACTCAACTTTATG
1 TTTATTTTTAACTCAACTTTATG
58983900 TTTATTTTTAACTCAACTTTATG
1 TTTATTTTTAACTCAACTTTATG
58983923 T
1 T
58983924 AAAAGAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTATTTTTAACTCAACTTTATG
Found at i:58991366 original size:48 final size:48
Alignment explanation
Indices: 58991313--58991406 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
58991303 TATTTTACCT
* * *
58991313 AAAAAAGAATGGAAAGGCTAAGGCGAAAACCCACAAAGGGCGCTTTCA
1 AAAAAACAATGGAAAGGCCAAGGCGAAAACCCACAAAGGGCACTTTCA
* * *
58991361 AAAAAACAATGGAGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTT
1 AAAAAACAATGGAAAGGCCAAGGCGAAAACCCACAAAGGGCACTTT
58991407 GAGACCAAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.11
Consensus pattern (48 bp):
AAAAAACAATGGAAAGGCCAAGGCGAAAACCCACAAAGGGCACTTTCA
Found at i:58992451 original size:133 final size:133
Alignment explanation
Indices: 58992213--58992488 Score: 385
Period size: 133 Copynumber: 2.1 Consensus size: 133
58992203 ATTTTACATG
* ** * * * *
58992213 TCTTGTCTCCCTGAAGTTGCAGTGGAGTAGTTCGATGATGGTGAATCTTGTCTTCCTGAAGTTGT
1 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGAAAACGGTGAATCTTGTCTTCCTAAAATTGC
* *
58992278 AGTGAAACAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGT
66 AGTGAAACAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGC
58992343 AGA
131 AGA
* *
58992346 TCTTGTTTCCCTGAAGTTGCAGTGGAGCGGATT-GAAAACGGTGAATCTTGTCTTCCTAAAATTG
1 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAG-TTCGAAAACGGTGAATCTTGTCTTCCTAAAATTG
* * *
58992410 CAGT-AAAGTAGATTTAAGTCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
65 CAGTGAAA-CAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGT
58992474 GCAGA
129 GCAGA
*
58992479 TCTCGTCTCC
1 TCTTGTCTCC
58992489 AGTGGAGCAG
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
132 3 0.02
133 120 0.96
134 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (133 bp):
TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGAAAACGGTGAATCTTGTCTTCCTAAAATTGC
AGTGAAACAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGC
AGA
Found at i:58992622 original size:44 final size:45
Alignment explanation
Indices: 58992572--58992677 Score: 117
Period size: 46 Copynumber: 2.4 Consensus size: 45
58992562 TGTCTCCCTA
* ** * *
58992572 AAGTTGCAGTGGAGCA-GATCGAAGTCACA-ATCCTTATCTCTCTG
1 AAGTTGCAGTGGAGCAGGAT-AAAAACACACAACCATATCTCTCTG
* *
58992616 AAGTTGCAGTAGAGCAGGATAAAAACACACGAACCATGTCTCTCTG
1 AAGTTGCAGTGGAGCAGGATAAAAACACAC-AACCATATCTCTCTG
58992662 AAGTTGCAGTGGAGCA
1 AAGTTGCAGTGGAGCA
58992678 TATTGAAGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 21 0.41
45 3 0.06
46 27 0.53
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGGATAAAAACACACAACCATATCTCTCTG
Found at i:58998240 original size:47 final size:47
Alignment explanation
Indices: 58998186--58998703 Score: 788
Period size: 47 Copynumber: 11.0 Consensus size: 47
58998176 GATTTTATGA
** *
58998186 GATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998233 GATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998280 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998327 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998374 GATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998421 GATGAATGTGAACATGCATATGTGTGATAA-GCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998467 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998514 GATGAATGTGAACATGCATATATGTGATAAGTCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
58998561 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
** * ** *
58998608 TTTGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * * ** * *
58998655 GATAAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
58998702 GA
1 GA
58998704 GATATGTATG
Statistics
Matches: 438, Mismatches: 31, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
46 46 0.11
47 389 0.89
48 3 0.01
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:58998350 original size:23 final size:23
Alignment explanation
Indices: 58998276--58998350 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
58998266 CGAATGGCCA
58998276 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
* *
58998299 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-ATGTGAAC--AT-G-CAT
58998323 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
58998346 ATGTG
1 ATGTG
58998351 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 6 0.15
23 15 0.38
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCAT
Found at i:58998626 original size:234 final size:235
Alignment explanation
Indices: 58998186--58998703 Score: 806
Period size: 234 Copynumber: 2.2 Consensus size: 235
58998176 GATTTTATGA
** *
58998186 GATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* *
58998251 TATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
58998316 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
131 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* *
58998381 GTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
196 GTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGT
*
58998421 GATGAATGTGAACATGCATATGTGTGATAA-GCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* *
58998485 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGTCCGA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
**
58998550 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTTTTGAAT
131 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
58998615 GTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
196 GTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGT
* * * * ** * *
58998655 GATAAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATGTGA
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
58998704 GATATGTATG
Statistics
Matches: 258, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
234 212 0.82
235 46 0.18
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (235 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGT
Found at i:58998692 original size:281 final size:281
Alignment explanation
Indices: 58998186--58998703 Score: 851
Period size: 281 Copynumber: 1.8 Consensus size: 281
58998176 GATTTTATGA
** *
58998186 GATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
58998251 TATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
* * *
58998316 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
131 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCAGAATGGCCAATGTGATAAAC
*
58998381 GTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
196 GTGAACATGCATATATGTGCTAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
58998446 GATAAGCCGAATGGCCAATGT
261 GATAAGCCGAATGGCCAATGT
*
58998467 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
58998532 TATATGTGATAAGTCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
** * *
58998597 ATGGCCAATGTTTTGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGTGATAAAC
131 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCAGAATGGCCAATGTGATAAAC
* * *
58998662 GTGGAA-GTGTATATATGTGGC-AAAGCCGAATGGCTAATGTGA
196 GT-GAACATGCATATATGT-GCTAAAGCCGAATGGCCAATGTGA
58998704 GATATGTATG
Statistics
Matches: 218, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
281 213 0.98
282 5 0.02
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (281 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCAGAATGGCCAATGTGATAAAC
GTGAACATGCATATATGTGCTAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
GATAAGCCGAATGGCCAATGT
Found at i:59000254 original size:40 final size:40
Alignment explanation
Indices: 59000201--59000514 Score: 479
Period size: 40 Copynumber: 7.9 Consensus size: 40
59000191 TTGAGAGTTA
* *
59000201 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
59000241 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
59000281 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
59000321 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
59000361 TATATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
59000401 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
59000441 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
59000481 TATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCT
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
59000515 GGAATTATGA
Statistics
Matches: 255, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.05
40 242 0.95
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:59000610 original size:57 final size:57
Alignment explanation
Indices: 59000522--59000758 Score: 298
Period size: 57 Copynumber: 4.2 Consensus size: 57
59000512 GCTGGAATTA
*
59000522 TGAGGCACTGTGTCTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
59000579 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
* ** * * ** *
59000636 TGAGGCACTATGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
* * * * * * * *
59000693 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAACGCTATGTGTGCAAAATCAGTCAG-
1 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGT-AGT
59000750 TG-GGCACTG
1 TGAGGCACTG
59000759 CGTATGCGAA
Statistics
Matches: 160, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
56 6 0.04
57 153 0.96
58 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
Found at i:59000620 original size:28 final size:27
Alignment explanation
Indices: 59000526--59000739 Score: 122
Period size: 28 Copynumber: 7.6 Consensus size: 27
59000516 GAATTATGAG
* * *
59000526 GCACTGTGTCTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCAAGTTCTT-AATCGA
* * * * *
59000554 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCAAGTTC-TTAATCGA
* *
59000582 GGCACTGTGTGTGCAAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAGTTCTT-AATCGA
* * * * *
59000611 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCAAGTTC-TTAATCGA
**
59000639 GGCACTATGTGTGTGAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGTTCTT-AATCGA
* ** *
59000668 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCAAG-TTCTTAATCGA
*
59000696 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCAAGTTC-TTAATCGA
* *
59000725 ACGCTATGTGTGCAA
1 GCACTATGTGTGCAA
59000740 AATCAGTCAG
Statistics
Matches: 139, Mismatches: 38, Indels: 18
0.71 0.19 0.09
Matches are distributed among these distances:
28 73 0.53
29 66 0.47
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCAAGTTCTTAATCGA
Found at i:59000721 original size:29 final size:29
Alignment explanation
Indices: 59000522--59000721 Score: 129
Period size: 29 Copynumber: 7.0 Consensus size: 29
59000512 GCTGGAATTA
* * * * *
59000522 TGAGGCACTGTGTCTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * * ** *
59000551 CGA-GCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * * *
59000579 TGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * * ** *
59000608 CGA-GCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* *
59000636 TGAGGCACTATGTGTGTGAGTTCTTCAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* **
59000665 CGA-GCACTATGTGTGCGAGATT-GGTAAT
1 TGAGGCACTATGTGTGCGAG-TTCTTTAAT
59000693 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
59000722 CGAACGCTAT
Statistics
Matches: 122, Mismatches: 44, Indels: 10
0.69 0.25 0.06
Matches are distributed among these distances:
28 59 0.48
29 63 0.52
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGTTCTTTAAT
Found at i:59001928 original size:47 final size:47
Alignment explanation
Indices: 59001874--59002205 Score: 538
Period size: 47 Copynumber: 7.1 Consensus size: 47
59001864 GATTTTATGA
** *
59001874 GATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
59001921 GATGAATGTAAACATGCATATATGTGCTAAGGCCGAATGACCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
59001968 GATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
59002015 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
59002062 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
59002109 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
59002156 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
59002203 GAT
1 GAT
59002206 AAACGTGGAA
Statistics
Matches: 272, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 272 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:59002064 original size:22 final size:22
Alignment explanation
Indices: 59002037--59002158 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
59002027 CATGCATATG
59002037 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
59002059 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
59002082 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* *
59002106 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
59002129 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
59002153 TGTGAT
1 TGTGAT
59002159 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 24 0.32
23 16 0.22
24 16 0.22
25 18 0.24
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:59003752 original size:131 final size:129
Alignment explanation
Indices: 59003344--59003810 Score: 410
Period size: 131 Copynumber: 3.6 Consensus size: 129
59003334 ATTATTCATT
* * * * *
59003344 TAAAAATTCTTTAAAACGAAGGCGAGAT-TT-GATATTTGGCAACTCGTGGAATCGTGCCCTAAC
1 TAAAAA-T-TTTAAAACGAAGG-TA-ATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTATC
* * * * * * **
59003407 GTGCTGGTTTGCAATTT-CTCGTTTGCTCAAAATAATTGAATGTCGCTTT-TGAATTTCATTCAT
62 GTGCTGGGTTGCAATTTCCT-GTTCGTTCAAAATAATCGAATATCCCTTTAT-AATTTCACCCAT
59003470 GTTTTC
125 G-TTTC
* * * ** * *
59003476 TAGAGACTCTTTAAAACGACGGTAATACTCGATGTTTGGCAATTTG-GGAGTCGTGCCCTATCGT
1 TA-AAAAT-TTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTATCGT
* * * *
59003540 GCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAAAATTTCACCCATGTCT
64 GCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTATAATTTCACCCATGT-T
59003605 T-
128 TC
* *
59003606 TAAAGATTCTATAAAACGAATGTAATGTTCGATGTTTGGCAATTC-AGGGAATCGTGCCCTATCG
1 TAAAAATT-T-TAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGA-GGAATCGTGCCCTATCG
* *
59003670 TGCTGGGTTGCAATTTCCTGCTGGTTCAAAATAATCGAATATCCCCTTTATAATTTCACCCATGT
63 TGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATAT-CCCTTTATAATTTCACCCATGT
59003735 TTCC
127 TT-C
** * * * * *
59003739 TAAAAATTTTAAAAAATAAGGCAATGTGCGATGATTAGAAATTCGAGGAATCGTGCCCTA-CTGT
1 TAAAAATTTT-AAAACGAAGGTAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTATC-GT
59003803 GCTGGGTT
64 GCTGGGTT
59003811 TCGATTTTCT
Statistics
Matches: 273, Mismatches: 46, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
128 1 0.00
129 3 0.01
130 34 0.12
131 125 0.46
132 100 0.37
133 10 0.04
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (129 bp):
TAAAAATTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTATCGTGC
TGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTATAATTTCACCCATGTTTC
Found at i:59003805 original size:132 final size:131
Alignment explanation
Indices: 59003521--59003810 Score: 354
Period size: 132 Copynumber: 2.2 Consensus size: 131
59003511 TTGGCAATTT
* * *
59003521 GGGAGTCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTT
1 GGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGCTCGTTCAAAACAATCGAATATCCCTT
* * * * * * * *
59003586 TAAAATTTCACCCATGTCTTTAAAGATTCTATAAAACGAATGTAATGTTCGATGTTTGGCAATTC
66 TAAAATTTCACCCATGTCTTTAAAAATTCTATAAAAAGAAGGCAATGTGCGATGATTAGAAATTC
59003651 A
131 A
* * *
59003652 GGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCTGCTGGTTCAAAATAATCGAATATCCCCT
1 GGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGCTCGTTCAAAACAATCGAATAT-CCCT
* * *
59003717 TTATAATTTCACCCATGT-TTCCTAAAAATTTTA-AAAAATAAGGCAATGTGCGATGATTAGAAA
65 TTAAAATTTCACCCATGTCTT--TAAAAATTCTATAAAAAGAAGGCAATGTGCGATGATTAGAAA
59003780 TTC-
128 TTCA
59003783 GAGGAATCGTGCCCTA-CTGTGCTGGGTT
1 G-GGAATCGTGCCCTATC-GTGCTGGGTT
59003811 TCGATTTTCT
Statistics
Matches: 137, Mismatches: 17, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
131 59 0.43
132 69 0.50
133 9 0.07
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (131 bp):
GGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGCTCGTTCAAAACAATCGAATATCCCTT
TAAAATTTCACCCATGTCTTTAAAAATTCTATAAAAAGAAGGCAATGTGCGATGATTAGAAATTC
A
Found at i:59027248 original size:26 final size:24
Alignment explanation
Indices: 59027213--59027270 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
59027203 ATTAGTTTCT
59027213 TAATTAAATTTAATAAAAAATATTAA
1 TAATTAAA-TTAATAAAAAA-ATTAA
* *
59027239 TAATTTAATTAATTAAAAAATTAA
1 TAATTAAATTAATAAAAAAATTAA
*
59027263 TAAATAAA
1 TAATTAAA
59027271 AGTAAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 11 0.39
25 10 0.36
26 7 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TAATTAAATTAATAAAAAAATTAA
Found at i:59032739 original size:27 final size:27
Alignment explanation
Indices: 59032709--59032882 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
59032699 ATATTGAGTC
* *
59032709 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
59032736 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
59032762 CGCACACTTAGTGCTACAT-ATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-CT
** *
59032789 CGCACACTTAGTGC--CATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
59032814 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
59032841 CGCACACTTAGTGC-ATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACT
59032868 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59032883 GTACAATTTA
Statistics
Matches: 129, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
25 23 0.18
26 23 0.18
27 83 0.64
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:59032823 original size:52 final size:52
Alignment explanation
Indices: 59032709--59032882 Score: 203
Period size: 52 Copynumber: 3.3 Consensus size: 52
59032699 ATATTGAGTC
* * * *
59032709 CGCACACTCAGTGCTATATAATCAA-CTCGCACACTTAGTGCTACGTAATCAAT
1 CGCACACTTAGTGCTACAT-ATCAATCTCGCACACTTAGTGC-ACATAGTCAAT
*
59032762 CGCACACTTAGTGCTACATATCAATCTCGCACACTTAGTGC-CATGGTCAATT
1 CGCACACTTAGTGCTACATATCAATCTCGCACACTTAGTGCACATAGTCAA-T
*
59032814 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATA-TCAATCTCGCACACTTAGTGCA-CATAGTC-AAT
59032868 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59032883 GTACAATTTA
Statistics
Matches: 106, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
51 7 0.07
52 41 0.39
53 35 0.33
54 21 0.20
55 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (52 bp):
CGCACACTTAGTGCTACATATCAATCTCGCACACTTAGTGCACATAGTCAAT
Found at i:59032854 original size:79 final size:78
Alignment explanation
Indices: 59032730--59032881 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 78
59032720 TGCTATATAA
* *
59032730 TCAACTCGCACACTTAGTGCTACGTAATCAATCGCACACTTAGTGC-TACATA-TCAATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAT-CATAGTCAA-ATCGCA
59032793 CACTTAGTGCCATGG
64 CACTTAGTGCCATGG
* * *
59032808 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCATCATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCA-ATCGCACACTTAGTGCATCATAGTCAAATCGCA
59032872 CACTTAGTGC
64 CACTTAGTGC
59032882 TGTACAATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
77 1 0.02
78 25 0.38
79 34 0.52
80 5 0.08
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (78 bp):
TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCATCATAGTCAAATCGCACA
CTTAGTGCCATGG
Found at i:59040666 original size:27 final size:27
Alignment explanation
Indices: 59040636--59040812 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
59040626 ATATTGAGTC
* * *
59040636 CGCACACTCAATGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
59040663 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
59040689 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-CT
* ** *
59040717 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
59040744 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
59040771 CGCACACTTAGTGC-ATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACT
59040798 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59040813 GTACAATTTA
Statistics
Matches: 131, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
26 26 0.20
27 82 0.63
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:59040742 original size:54 final size:54
Alignment explanation
Indices: 59040636--59040812 Score: 209
Period size: 54 Copynumber: 3.3 Consensus size: 54
59040626 ATATTGAGTC
* * * * * *
59040636 CGCACACTCAATGCTATATAATCAA-CTCGCACACTTAGTGCTACGTAATCAAT
1 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATAGTCAAT
*
59040689 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATAGTCAA-T
* *
59040744 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTG-CATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAATCTCGCACACTTAGTGCCA-CATAGTC-AAT
59040798 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59040813 GTACAATTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
53 24 0.22
54 61 0.56
55 23 0.21
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATAGTCAAT
Found at i:59040753 original size:81 final size:81
Alignment explanation
Indices: 59040657--59040811 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
59040647 TGCTATATAA
* *
59040657 TCAACTCGCACACTTAGTGC-TACGTAATCA-ATCGCACACTTAGTGC-TACATAATCAATCTCG
1 TCAACTCGCACACTTAGTGCAT-CATAATCATATCGCACACTTAGTGCAT-CATAATCAA-ATCG
59040719 CACACTTAGTGCCACATGG
63 CACACTTAGTGCCACATGG
* * * *
59040738 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCATCATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCATATCGCACACTTAGTGCATCATAATCAAATCGCAC
59040803 ACTTAGTGC
66 ACTTAGTGC
59040812 TGTACAATTT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
81 40 0.62
82 24 0.37
83 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCATATCGCACACTTAGTGCATCATAATCAAATCGCAC
ACTTAGTGCCACATGG
Found at i:59076049 original size:49 final size:48
Alignment explanation
Indices: 59075932--59076108 Score: 200
Period size: 49 Copynumber: 3.6 Consensus size: 48
59075922 TGTATAATGC
* * **
59075932 CGATGCCATGTCCCAGACATGGTCTTACGCTCG-CTCATC--CATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCAAAATCGTGT
59075979 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGT-GT
* * *
59076028 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAAT-CGTGT
*
59076078 CAATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
59076109 CACACATCTC
Statistics
Matches: 115, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
46 4 0.03
47 32 0.28
48 4 0.03
49 38 0.33
50 34 0.30
51 3 0.03
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGTGT
Found at i:59076128 original size:96 final size:97
Alignment explanation
Indices: 59075930--59076293 Score: 311
Period size: 94 Copynumber: 3.9 Consensus size: 97
59075920 AGTGTATAAT
* *
59075930 GCCGATGCCATGTCCCAGACATGGTCTTACGCTCGCTCATC-C--ATCAAGT--CGATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATATC-AGTGCCGATGCCATGT
** * *
59075990 CCCAGACATGGTCTTACACTGACTATCAAAATCGTG
64 CCCAGACATGGTCTTACACT-ACTATC-ATCTCATA
* * * *
59076026 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCAATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCAGTGCCGATGCCATGTCC
59076091 CAGACATGGTCTTACACTCAC-A-CATCTCATA
66 CAGACATGGTCTTACACT-ACTATCATCTCATA
* * * * * *
59076122 GCCGATG-CATGTCCGAGACCT-GTCTTACACTGGCT-T-ACATCTTGAG-GCTGATG-TATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAT-ATCAGTGCCGATGCCATGTC
*
59076181 CCAGACAT-GTCTTACACTAGCTATCGTCTCA-A
65 CCAGACATGGTCTTACACTA-CTATCATCTCATA
* *
59076213 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTA-ATAT--G-GCTGATG-CATG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--ACATATCAGTGCCGATGCCATG
*
59076273 TCCCAAACAT-GTCTTACACTA
63 TCCCAGACATGGTCTTACACTA
59076294 GCACACACAC
Statistics
Matches: 225, Mismatches: 27, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
89 1 0.00
90 11 0.05
91 15 0.07
92 21 0.09
93 15 0.07
94 58 0.26
95 15 0.07
96 47 0.21
97 5 0.02
98 5 0.02
99 32 0.14
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCAGTGCCGATGCCATGTCC
CAGACATGGTCTTACACTACTATCATCTCATA
Found at i:59076218 original size:46 final size:47
Alignment explanation
Indices: 59076029--59076295 Score: 187
Period size: 46 Copynumber: 5.7 Consensus size: 47
59076019 AATCGTGGTC
* * ** *
59076029 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTAT--CATCTCAATAGCT
* *
59076079 AATGCCATGTCCCAGACATGGTCTTACACTCA-C-A-CATCTC-ATAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACT-AGCTATCATCTCAATAGCT
* * * ** *
59076125 GATGCATGTCCGAGACCTGTCTTACACTGGCT-TACATCTTGA-GGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCAATAGCT
* *
59076171 GATGTATGTCCCAGACATGTCTTACACTAGCTATCGTCTCAAT-GCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAATAGCT
* *
59076217 GATGCCATGTCCCAGACATGGTCTTACACTGGC--TC-TCTTAATATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATCTCAATA--GCT
*
59076265 GATGCATGTCCCAAACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
59076296 ACACACACAT
Statistics
Matches: 180, Mismatches: 23, Indels: 32
0.77 0.10 0.14
Matches are distributed among these distances:
44 11 0.06
45 19 0.11
46 72 0.40
47 28 0.16
48 19 0.11
50 30 0.17
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAATAGCT
Found at i:59080010 original size:46 final size:47
Alignment explanation
Indices: 59079827--59080143 Score: 251
Period size: 46 Copynumber: 6.7 Consensus size: 47
59079817 AGTGTATAAT
* * * *
59079827 GCCGATGCCATGTCCCAGACATGGTCTTACGCT-G-GCTCATC-CATCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCGT-AG
* * * * *
59079874 GTCGATGCCATGTCCCAGACATGGTCTTACAGTAGCTCTCACATATC-CAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATCTCGTAG
* * *
59079924 GCCGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCGTAG
* * *
59079970 GCCGATGCATGTCCAAGACAAGTCTTACACTGGCT-TACATCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGTAG
* *
59080016 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAG
* * * *
59080062 GCCCATGCCATATCCCAGACATGCTCTTACACTAGCTCTCATATTGT-G
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCATCTCGTAG
*
59080110 GCCAATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
59080144 ATACACACTT
Statistics
Matches: 225, Mismatches: 30, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
44 8 0.04
45 15 0.07
46 76 0.34
47 60 0.27
48 27 0.12
49 4 0.02
50 31 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAG
Found at i:59080119 original size:94 final size:94
Alignment explanation
Indices: 59079827--59080142 Score: 310
Period size: 94 Copynumber: 3.4 Consensus size: 94
59079817 AGTGTATAAT
* * *
59079827 GCCGATGCCATGTCCCAGACATGGTCTTACGCT-GGCTCATCCATCAA-GTCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGACTCAT-C-TCAATGCCGATGCCATGTCCC
* *
59079890 AGACATGGTCTTACAGTAGCTCTCACATATCCAT-
63 AGACAT-GTCTTACACTAGCTCT-ACATAT-CGTG
* * * *
59079924 GCCGATGCCATGTCCCAGACATGGTCTTACA-TTGACACATCTC-GTAGCCGATG-CATGTCCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGACTCATCTCAAT-GCCGATGCCATGTCCCA
* * * *
59079986 GACAAGTCTTACACTGGCT-TACATCTCGAG
64 GACATGTCTTACACTAGCTCTACATATCGTG
* * *
59080016 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGCCCATGCCATATCCCAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAG-ACTCATCTCAATGCCGATGCCATGTCCCAG
*
59080080 ACATGCTCTTACACTAGCTCT-CATATTGTG
65 ACATG-TCTTACACTAGCTCTACATATCGTG
*
59080110 GCCAATGCATGTCCCAGACAT-GTCTTACACTAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAG
59080143 CATACACACT
Statistics
Matches: 184, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
90 8 0.04
91 17 0.09
92 25 0.14
93 14 0.08
94 62 0.34
95 15 0.08
96 8 0.04
97 35 0.19
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (94 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGACTCATCTCAATGCCGATGCCATGTCCCAGA
CATGTCTTACACTAGCTCTACATATCGTG
Found at i:59080129 original size:140 final size:141
Alignment explanation
Indices: 59079876--59080140 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
59079866 TCCATCAAGT
* * * *
59079876 CGATGCCATGTCCCAGACATGGTCTTACAGTAGCTCTCACATATCCATGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCAATGCCCATGCCATATCCCA
* * * *
59079941 GACATGGTCTTACATTGACACATCTCGTAGCCGATGCATGTCCAAGACAAGTCTTACACTGGCTT
65 GACATGCTCTTACATAGACACATATCGTAGCCAATGCATGTCCAAGACAAGTCTTACACTGGCTT
59080006 ACATCTCGAGGC
130 ACATCTCGAGGC
*
59080018 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGCCCATGCCATATCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCCATGCCATATCCCAG
* * * * * *
59080080 ACATGCTCTTACACTAGCTCTCATATTGTGGCCAATGCATGTCCCAGACATGTCTTACACT
66 ACATGCTCTTACA-TAG-ACACATATCGTAGCCAATGCATGTCCAAGACAAGTCTTACACT
59080141 AGCATACACA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 35 0.33
139 2 0.02
140 50 0.47
141 14 0.13
142 5 0.05
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCCATGCCATATCCCAG
ACATGCTCTTACATAGACACATATCGTAGCCAATGCATGTCCAAGACAAGTCTTACACTGGCTTA
CATCTCGAGGC
Found at i:59083776 original size:47 final size:47
Alignment explanation
Indices: 59083717--59084096 Score: 591
Period size: 47 Copynumber: 8.1 Consensus size: 47
59083707 GAAATGATAG
*
59083717 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
59083764 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
59083811 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
59083858 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
59083905 TAAGGCCTAATAGCCGATGTGATGAATGTGAAGGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
59083952 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
59083999 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
59084046 CAGGGCCGAGTGGCCAACT-TGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGA-TGTGATGAATGTGAAAGTGTATATATGTGA
59084093 TAAG
1 TAAG
59084097 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 311 1.00
48 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:59084271 original size:37 final size:37
Alignment explanation
Indices: 59084215--59084293 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
59084205 CCGAGCTCTA
* * * *
59084215 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
59084252 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59084289 AAGAC
1 AAGAC
59084294 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59088839 original size:25 final size:27
Alignment explanation
Indices: 59088810--59088873 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 27
59088800 TTTCACTGTA
59088810 TTTATTATTACG-GATATTT-T-AAATT
1 TTTATTATTA-GAGATATTTATAAAATT
* *
59088835 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTAGAGATATTTATAAAATT
*
59088862 ATTATTATTAGA
1 TTTATTATTAGA
59088874 TAGGAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 15 0.47
26 1 0.03
27 15 0.47
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.53
Consensus pattern (27 bp):
TTTATTATTAGAGATATTTATAAAATT
Found at i:59088871 original size:27 final size:25
Alignment explanation
Indices: 59088823--59088875 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
59088813 ATTATTACGG
*
59088823 ATATTTTAAATTTTTATGATTAGAT
1 ATATTTTAAATTATTATGATTAGAT
*
59088848 ATATTTATAAAATTATTATTATTAGAT
1 ATATTT-T-AAATTATTATGATTAGAT
59088875 A
1 A
59088876 GGAAATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 1 0.04
27 17 0.71
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (25 bp):
ATATTTTAAATTATTATGATTAGAT
Found at i:59089826 original size:15 final size:15
Alignment explanation
Indices: 59089806--59089836 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
59089796 TAGGATTCAG
59089806 TTTTTTCTTCTTTTC
1 TTTTTTCTTCTTTTC
*
59089821 TTTTTTTTTCTTTTC
1 TTTTTTCTTCTTTTC
59089836 T
1 T
59089837 CTTCATCTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTCTTCTTTTC
Found at i:59093665 original size:93 final size:93
Alignment explanation
Indices: 59093553--59093724 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
59093543 CGCCCATAAG
*
59093553 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
59093617 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
** *
59093646 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
59093711 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
59093725 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59093740 original size:46 final size:49
Alignment explanation
Indices: 59093546--59093724 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 49
59093536 TGTAACCCGC
* * * *
59093546 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GGC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
59093592 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * * * *
59093642 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGA---CATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
59093685 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
59093725 TCAATCATCC
Statistics
Matches: 110, Mismatches: 12, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 60 0.55
47 28 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:59096143 original size:29 final size:29
Alignment explanation
Indices: 59096104--59096191 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
59096094 CAAAGATAAC
*
59096104 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
59096133 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
59096162 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
59096192 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:59096162 original size:15 final size:15
Alignment explanation
Indices: 59096104--59096182 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
59096094 CAAAGATAAC
*
59096104 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
59096118 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
59096133 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
59096147 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
59096162 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
59096177 AAGAAA
1 AAGAAA
59096183 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:59096191 original size:15 final size:15
Alignment explanation
Indices: 59096115--59096191 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
59096105 AGAAAACCGA
59096115 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
59096130 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
59096144 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
59096158 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
59096174 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
59096189 ATA
1 ATA
59096192 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:59099224 original size:93 final size:93
Alignment explanation
Indices: 59099112--59099283 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
59099102 CGCCCATAAG
* *
59099112 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGAACTCAACTG
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTC
59099176 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
59099205 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
59099270 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
59099284 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59099278 original size:46 final size:46
Alignment explanation
Indices: 59099105--59099280 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
59099095 TGTAACCCGC
* *
59099105 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * * *
59099151 CCATAAGTGAACTCGAACTCAACTGAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
59099201 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
59099244 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
59099281 TGCTCAATCA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 59 0.55
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:59101853 original size:25 final size:27
Alignment explanation
Indices: 59101824--59101885 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
59101814 TTTTACTGTA
59101824 TTTATTATTACAGATATTT-T-AAATT
1 TTTATTATTACAGATATTTATAAAATT
* * *
59101849 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTACAGATATTTATAAAATT
*
59101876 ATTATTATTA
1 TTTATTATTA
59101886 GATAGGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 1 0.03
27 13 0.43
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTATTATTACAGATATTTATAAAATT
Found at i:59101885 original size:27 final size:25
Alignment explanation
Indices: 59101825--59101889 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 25
59101815 TTTACTGTAT
* * *
59101825 TTATTATTACAGATATTTTAAATTT
1 TTATTATTAGATATATTTTAAATTA
*
59101850 TTATGATTAGATATATTTATAAAATTA
1 TTATTATTAGATATATTT-T-AAATTA
59101877 TTATTATTAGATA
1 TTATTATTAGATA
59101890 GGAAAAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 15 0.45
26 1 0.03
27 17 0.52
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (25 bp):
TTATTATTAGATATATTTTAAATTA
Found at i:59102828 original size:5 final size:5
Alignment explanation
Indices: 59102810--59102841 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
59102800 GGATTTAGTT
59102810 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC T
59102842 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:59102838 original size:15 final size:16
Alignment explanation
Indices: 59102810--59102865 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
59102800 GGATTTAGTT
59102810 TTTTCTTCTTCTTTTC
1 TTTTCTTCTTCTTTTC
59102826 TTTTCTT-TTCTTTTC
1 TTTTCTTCTTCTTTTC
* * *
59102841 TCTTCATCTAC-TTTC
1 TTTTCTTCTTCTTTTC
*
59102856 TCTTCTTCTT
1 TTTTCTTCTT
59102866 TTCCCCATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 25 0.74
16 9 0.26
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTCTTCTTTTC
Found at i:59104139 original size:26 final size:26
Alignment explanation
Indices: 59104068--59104145 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
59104058 TAAAACAGAT
* * *
59104068 AAAATTACTGAAATACCTTTATAGGTGG
1 AAAATTACTGATATACC-CT-TAGGAGG
* *
59104096 AAAATTTACAGATTTACCCTTAGGAGG
1 AAAA-TTACTGATATACCCTTAGGAGG
*
59104123 AAAATTACTGATATACCCCTAGG
1 AAAATTACTGATATACCCTTAGG
59104146 GTTAAGGTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 16 0.39
27 10 0.24
28 5 0.12
29 10 0.24
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (26 bp):
AAAATTACTGATATACCCTTAGGAGG
Found at i:59107565 original size:41 final size:43
Alignment explanation
Indices: 59107486--59107579 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 43
59107476 TTAACGAGGT
* * *
59107486 GTAAGACCATGTCTGGGACATTGGCATCATTTTGTGA-TT-AC
1 GTAAGACCATGTCTAGGACATCGACATCATTTTGTGATTTCAC
** *
59107527 GTAAGACCATGTCTAGGACATCGACATTGTTATT-TGATTTCGC
1 GTAAGACCATGTCTAGGACATCGACATCATT-TTGTGATTTCAC
59107570 GTAAGACCAT
1 GTAAGACCAT
59107580 AGCTGGGCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 29 0.66
42 4 0.09
43 11 0.25
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACATCGACATCATTTTGTGATTTCAC
Found at i:59114561 original size:38 final size:39
Alignment explanation
Indices: 59114518--59114858 Score: 222
Period size: 47 Copynumber: 8.0 Consensus size: 39
59114508 TTTCAAATTA
*
59114518 ACATGTA-TAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTAGTAACCGTGGTATATCCACTTAGCACCACGTT
* * * *
59114556 ACATGT-TTAACCGTGATATATCCACTTATCACCACATTAAT
1 ACATGTAGTAACCGTGGTATATCCACTTAGCACCAC-GT--T
* * *
59114597 GAATCAATATATGTAACCCTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA-GTAACCGTGGTATATCCACTTAGCACCACGTT
*
59114641 ACATGT-TTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTAGTAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
59114682 GAATCAATATATGTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 --A-C-ATGTA-GTAACCGTGGTATATCCACTTAGCACCACG-T--T
*
59114729 GAATCAATATATGTAACCGTGGTATATCCACTTAGCACCACGTT
1 --A-C-ATGTA-GTAACCGTGGTATATCCACTTAGCACCACGTT
* *
59114773 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACATT
1 ACATG------TA---GTAACCGTGGTATATCCACTTAGCACCACGTT
*
59114821 ACACGTA-TAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTAGTAACCGTGGTATATCCACTTAGCACCACGTT
59114859 TTTTTCATTC
Statistics
Matches: 251, Mismatches: 25, Indels: 54
0.76 0.08 0.16
Matches are distributed among these distances:
38 87 0.35
39 2 0.01
40 5 0.02
41 4 0.02
42 4 0.02
43 2 0.01
44 4 0.02
45 6 0.02
46 4 0.02
47 98 0.39
48 35 0.14
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (39 bp):
ACATGTAGTAACCGTGGTATATCCACTTAGCACCACGTT
Done.