Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 174 of 311
Found at i:59114636 original size:47 final size:47
Alignment explanation
Indices: 59114563--59114817 Score: 348
Period size: 47 Copynumber: 5.6 Consensus size: 47
59114553 GTTACATGTT
* * *
59114563 TAACCGTGATATATCCACTTATCACCACATTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
59114610 TAACCCTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
59114648 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
59114695 TAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
59114742 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
59114790 TAATCGTGGTATATCCACTTAGCACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
59114818 ATTACACGTA
Statistics
Matches: 184, Mismatches: 14, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
38 27 0.15
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 101 0.55
48 40 0.22
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:59114668 original size:85 final size:85
Alignment explanation
Indices: 59114525--59114858 Score: 452
Period size: 85 Copynumber: 3.8 Consensus size: 85
59114515 TTAACATGTA
* *
59114525 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGATATATCCACTTATCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
59114590 CATTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
59114610 TAACCCTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
59114675 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * *
59114695 TAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATATGTAACCGTGGTATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-TAACCGTGGTATATCCAC
* *
59114760 TTAGCACCACGTTACATGTATCAATATGTG
57 TTAGCACCACGTTA-ATGAATCAATATATG
* * * * *
59114790 TAATCGTGGTATATCCACTTAGCACCACATTACACGTATAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
59114855 CGTT
66 CGTT
59114859 TTTTTCATTC
Statistics
Matches: 223, Mismatches: 16, Indels: 19
0.86 0.06 0.07
Matches are distributed among these distances:
85 107 0.48
86 32 0.14
88 3 0.01
89 1 0.00
90 2 0.01
91 1 0.00
92 4 0.02
93 1 0.00
94 33 0.15
95 39 0.17
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:59133204 original size:26 final size:26
Alignment explanation
Indices: 59133174--59133225 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
59133164 AATAGTAGTT
*
59133174 AAATGTTA-AATATATATGTTGTTATG
1 AAATGCTAGAATATATAT-TTGTTATG
*
59133200 AAATGCTAGAATTTATATTTGTTATG
1 AAATGCTAGAATATATATTTGTTATG
59133226 GCCGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (26 bp):
AAATGCTAGAATATATATTTGTTATG
Found at i:59135124 original size:79 final size:81
Alignment explanation
Indices: 59134988--59135172 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
59134978 TTGAATGATG
*
59134988 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
59135052 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
59135067 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
59135129 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
59135147 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59135173 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:59135186 original size:40 final size:40
Alignment explanation
Indices: 59134989--59135172 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
59134979 TGAATGATGT
* * * *
59134989 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
59135029 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
59135069 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
59135107 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
59135148 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
59135173 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:59135194 original size:79 final size:79
Alignment explanation
Indices: 59134989--59135205 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
59134979 TGAATGATGT
** * * * **
59134989 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
59135052 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
59135069 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
59135134 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
59135148 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
59135206 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:59147207 original size:27 final size:27
Alignment explanation
Indices: 59147082--59147227 Score: 148
Period size: 27 Copynumber: 5.4 Consensus size: 27
59147072 TGGATAATTT
* * *
59147082 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTATAGG
* *
59147109 GTAGAATTACCGAAATAACCCTGTAGG
1 GTAGAATTACCGAAATACCCCTATAGG
* * *
59147136 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTATAGG
* *
59147163 GTAGAAATACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTATAGG
** * * *
59147190 GTAGAATTAATGAGATACCCTTATGGG
1 GTAGAATTACCGAAATACCCCTATAGG
*
59147217 GTAAAATTACC
1 GTAGAATTACC
59147228 ATTTTGCCCC
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTATAGG
Found at i:59147211 original size:54 final size:54
Alignment explanation
Indices: 59147082--59147198 Score: 180
Period size: 54 Copynumber: 2.2 Consensus size: 54
59147072 TGGATAATTT
* *
59147082 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATAACCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGG
* * * *
59147136 ATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGG
59147190 GTAGAATTA
1 GTAGAATTA
59147199 ATGAGATACC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGG
Found at i:59152354 original size:40 final size:39
Alignment explanation
Indices: 59152182--59152365 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
59152172 CGAATGATGT
* * * *
59152182 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
59152222 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTCACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
59152262 CCGGGATAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
59152300 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
59152341 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
59152366 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:59152387 original size:79 final size:79
Alignment explanation
Indices: 59152234--59152398 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
59152224 GGACTAAGAT
* * **
59152234 CCGAAGGCATTTGTGCGAGTCACTAATTCCGGGATAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTCACTAATACCGGGATAAGCCCAAAGGCATTGGAACGAGTTACTAA
* *
59152299 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* * * *
59152313 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTCACTAAT-ACCGGGATAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
59152376 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
59152392 CCGAAGG
1 CCGAAGG
59152399 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.69
80 20 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTCACTAATACCGGGATAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:59160335 original size:79 final size:81
Alignment explanation
Indices: 59160199--59160381 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
59160189 TCGAATGATG
* *
59160199 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
59160263 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
59160278 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
59160340 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
59160358 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
59160382 AGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:59160390 original size:40 final size:39
Alignment explanation
Indices: 59160200--59160381 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
59160190 CGAATGATGT
* * * *
59160200 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
59160240 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
59160280 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
59160318 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
59160359 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
59160382 AGAACGAGTA
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:59160406 original size:79 final size:79
Alignment explanation
Indices: 59160252--59160416 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
59160242 GGACTAAGAT
* * **
59160252 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTAGAACGAGTTACTAA
* *
59160317 ATCCGGGTTAAGTC
66 ATCCGAGTTAAATC
*
59160331 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTAGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTAGAACGAGTTA-C
* *
59160394 TATATCC-AGTTAAATT
63 TAAATCCGAGTTAAATC
59160410 CCGAAGG
1 CCGAAGG
59160417 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTAGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:59162075 original size:42 final size:43
Alignment explanation
Indices: 59161989--59162160 Score: 135
Period size: 42 Copynumber: 4.0 Consensus size: 43
59161979 GGGTACAATA
* * * *
59161989 CCGACGTCCCAGACGTGGTCCTT-CATGTAATTCAGTATCGATG
1 CCGATGTCCCAGACATGGT-CTTACACGTAAATCAGTATCGATG
**
59162032 CCTCTGTCCCA-AGCA-GGTTCTTACACG-AAATCAGATAT-GATG
1 CCGATGTCCCAGA-CATGG-TCTTACACGTAAATCAG-TATCGATG
* *
59162074 CCGATGTCCCAGACATGGTCTTACACGTAAATCTCA-AATCGAGG
1 CCGATGTCCCAGACATGGTCTTACACGTAAA--TCAGTATCGATG
*
59162118 CCTG-TGTCCCAGACATGGTCTTACACGATAACTCAG-ATCGATG
1 CC-GATGTCCCAGACATGGTCTTACACG-TAAATCAGTATCGATG
59162161 TTCACATTCC
Statistics
Matches: 104, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
42 36 0.35
43 33 0.32
44 28 0.27
45 7 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (43 bp):
CCGATGTCCCAGACATGGTCTTACACGTAAATCAGTATCGATG
Found at i:59165464 original size:27 final size:28
Alignment explanation
Indices: 59165434--59165508 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
59165424 AAAGAATACT
*
59165434 TTCGTGGCAATCTTCGAAAA-AGGCGCC
1 TTCGTGGCAATCTTCGAAAATAGACGCC
*
59165461 TTCGTGGCAATC-TCTAAAAATAGACGCC
1 TTCGTGGCAATCTTC-GAAAATAGACGCC
* *
59165489 TTTGTGGCAATCTTTGAAAA
1 TTCGTGGCAATCTTCGAAAA
59165509 GGAAGCCTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.05
27 16 0.40
28 21 0.52
29 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (28 bp):
TTCGTGGCAATCTTCGAAAATAGACGCC
Found at i:59171263 original size:27 final size:26
Alignment explanation
Indices: 59171240--59171318 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
59171230 GTGTACTTTG
*
59171240 AATGAATCACATTTGTGGCATACTCT
1 AATGAATCGCATTTGTGGCATACTCT
* **
59171266 ATATGAATCGCCTTTGTGGTGTACTCT
1 A-ATGAATCGCATTTGTGGCATACTCT
* *
59171293 AAATGGATCGCTTTTGTGGCATACTC
1 -AATGAATCGCATTTGTGGCATACTC
59171319 AGGATAGATT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (26 bp):
AATGAATCGCATTTGTGGCATACTCT
Found at i:59173328 original size:50 final size:50
Alignment explanation
Indices: 59173207--59173637 Score: 391
Period size: 50 Copynumber: 8.5 Consensus size: 50
59173197 GCGAGAACAT
* * *
59173207 ATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGTCAC
* *
59173259 ATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * ** * * * *
59173309 ATGTGTAGTATTAAATGCAGGCTACTATGCATACCCGATAGTTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCAC
* * * * * *
59173360 GTGTGTAGTACTGAGTACAGGCTACTACATGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * *
59173410 GTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* ** * * * *
59173460 ATGTGTAGTAATAAGTGCAGGCTACTGTGTGTACCCG-TTAAATTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCAC
* * * * * *
59173511 GTGTGTAGTACTAAGTGCGGGCTACTACGTGTATCAGATGGATAAGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * *
59173561 GTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
59173611 ATGTGTAGTACTAAGTGCAGGCTACTA
1 ATGTGTAGTACTAAGTGCAGGCTACTA
59173638 TGCCTACTAG
Statistics
Matches: 304, Mismatches: 69, Indels: 14
0.79 0.18 0.04
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 197 0.65
51 71 0.23
52 28 0.09
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
Found at i:59173408 original size:101 final size:101
Alignment explanation
Indices: 59173255--59173640 Score: 308
Period size: 101 Copynumber: 3.8 Consensus size: 101
59173245 CAGTTTTAGG
* * * * * *
59173255 TCACATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAT
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
59173320 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
66 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *
59173356 TCACGTGTGTAGTACTGAGTACAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
* * * ** * * * * *
59173421 TGAGTGCAGGCTACTACGTGTACCGGATTG-ATAGG
66 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *** * * ** * * *
59173456 TCGCATGTGTAGTAATAAGTGCAGGCTACTGTGTGTACCCGTTAAATTCGATCACGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGAT-GGTTAGGTCACATGTGTAGTA
* * * ** * * * * **
59173521 CTAAGTGCGGGCTACTACGTGTATCAGATGGATAAG-
65 CTAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *
59173557 TCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
*
59173622 TAAGTGCAGGCTACTATGC
66 TAAATGCAGGCTACTATGC
59173641 CTACTAGAGA
Statistics
Matches: 222, Mismatches: 61, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
100 65 0.29
101 155 0.70
102 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
Found at i:59173534 original size:151 final size:151
Alignment explanation
Indices: 59173250--59173640 Score: 557
Period size: 151 Copynumber: 2.6 Consensus size: 151
59173240 TAAGACAGTT
* * * *
59173250 TTAGGTCACATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* * ** *
59173315 AGTATTAAATGCAGGCTACTATGCATACCCGATAGTTTCGATCACGTGTGTAGTACTGAGTACAG
66 AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
59173380 GCTACTACATGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * *
59173401 TTAGGTCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* ** * * *
59173466 AGTAATAAGTGCAGGCTACTGTGTGTACCCGTTAAATTCGATCACGTGTGTAGTACTAAGTGCGG
66 AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
*
59173531 GCTACTACGTGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * * *
59173552 ATAAGTCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
*
59173617 AGTACTAAGTGCAGGCTACTATGC
66 AGTAATAAGTGCAGGCTACTATGC
59173641 CTACTAGAGA
Statistics
Matches: 210, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 210 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
GCTACTACATGTATCAGATGG
Found at i:59179221 original size:39 final size:40
Alignment explanation
Indices: 59179144--59179290 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
59179134 TAGCTCCTCG
* * *
59179144 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
59179184 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
59179223 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
59179263 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
59179291 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:59179301 original size:80 final size:80
Alignment explanation
Indices: 59179190--59179370 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
59179180 CTCATTCAAT
* * *
59179190 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
59179253 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
59179269 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
59179333 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
59179350 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
59179371 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:59179330 original size:40 final size:40
Alignment explanation
Indices: 59179187--59179370 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
59179177 TAACTCATTC
* *
59179187 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
59179227 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
59179267 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
59179307 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
59179348 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
59179371 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:59187029 original size:39 final size:40
Alignment explanation
Indices: 59186952--59187098 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
59186942 TAGCTCCTCG
* * *
59186952 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
59186992 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
59187031 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
59187071 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
59187099 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:59187109 original size:80 final size:80
Alignment explanation
Indices: 59186998--59187178 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
59186988 CTCATTCAAT
* * *
59186998 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
59187061 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
59187077 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
59187141 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
59187158 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
59187179 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:59187138 original size:40 final size:40
Alignment explanation
Indices: 59186995--59187178 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
59186985 TAACTCATTC
* *
59186995 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
59187035 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
59187075 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
59187115 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
59187156 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
59187179 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:59189645 original size:28 final size:28
Alignment explanation
Indices: 59189582--59189704 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
59189572 ATATTAAGTC
*
59189582 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
59189609 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
59189637 CACACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
59189665 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
59189694 CGCACACTTAG
1 CGCACACTTAG
59189705 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.26
28 47 0.55
29 16 0.19
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:59193174 original size:46 final size:46
Alignment explanation
Indices: 59193087--59193174 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
59193077 TTCTCTTATA
* * *
59193087 GCCGACGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTG
1 GCCGACGCATGTCCCAGACATATCTTACACTGCCCTACGTCTCGTG
*
59193133 GCCGATGCATGTCCCAGACATATCTTACACTAGCCCT-CGTCT
1 GCCGACGCATGTCCCAGACATATCTTACACT-GCCCTACGTCT
59193175 TAATGTCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
46 34 0.92
47 3 0.08
ACGTcount: A:0.19, C:0.34, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGACGCATGTCCCAGACATATCTTACACTGCCCTACGTCTCGTG
Found at i:59200426 original size:47 final size:48
Alignment explanation
Indices: 59200355--59200529 Score: 182
Period size: 47 Copynumber: 3.7 Consensus size: 48
59200345 TAAGGTGCCA
* * * *
59200355 ATGTCATGTCCTAGACACGATCTTACACTGGCTCAT-ATCTCAAGTCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
* **
59200402 ATGTCATGTCCCAGACATGGTCTTACACTGGCT-ATCCTCTTGTAGCCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAAGCCG
* * * *
59200450 ATG-CATGTCCCAAACAT-GTCTTACACTAGC-CCTCGTCTCAATGCCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GCCG
*
59200496 ATGCCATGTCCC-GACATGGTCTTACACTGGCTCA
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCA
59200530 CACATGAATG
Statistics
Matches: 105, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.02
46 29 0.28
47 65 0.62
48 9 0.09
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
Found at i:59200849 original size:13 final size:12
Alignment explanation
Indices: 59200828--59200861 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
59200818 GGGGTTGTTT
59200828 ACTAACTAATTA
1 ACTAACTAATTA
59200840 ACTAAACTAATTA
1 ACT-AACTAATTA
59200853 ACTAACTAA
1 ACTAACTAA
59200862 ACTAAAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (12 bp):
ACTAACTAATTA
Found at i:59200858 original size:17 final size:17
Alignment explanation
Indices: 59200828--59200866 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
59200818 GGGGTTGTTT
*
59200828 ACTAACTAATTAACTAA
1 ACTAACTAACTAACTAA
*
59200845 ACTAATTAACTAACTAA
1 ACTAACTAACTAACTAA
59200862 ACTAA
1 ACTAA
59200867 AGCAAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (17 bp):
ACTAACTAACTAACTAA
Found at i:59205706 original size:12 final size:12
Alignment explanation
Indices: 59205691--59205720 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
59205681 AGATTCCCTA
*
59205691 TGGTTTTCCCAT
1 TGGTTTTCCAAT
59205703 TGGTTTTCCAAT
1 TGGTTTTCCAAT
59205715 TGGTTT
1 TGGTTT
59205721 GGGAGAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.17, G:0.20, T:0.53
Consensus pattern (12 bp):
TGGTTTTCCAAT
Found at i:59212582 original size:21 final size:21
Alignment explanation
Indices: 59212558--59212598 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
59212548 GCTGTGTGTG
59212558 ACACATGGCCTTGGTACACGC
1 ACACATGGCCTTGGTACACGC
59212579 ACACATGGCCTTGGTACACG
1 ACACATGGCCTTGGTACACG
59212599 ACCGTGTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (21 bp):
ACACATGGCCTTGGTACACGC
Found at i:59214060 original size:16 final size:16
Alignment explanation
Indices: 59214039--59214073 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
59214029 AGAAATTATA
59214039 AAAAATATAAAATCAG
1 AAAAATATAAAATCAG
59214055 AAAAATATAAAATCAG
1 AAAAATATAAAATCAG
59214071 AAA
1 AAA
59214074 TAAATTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (16 bp):
AAAAATATAAAATCAG
Found at i:59222439 original size:43 final size:43
Alignment explanation
Indices: 59222390--59222556 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
59222380 GATTACCGAG
* *
59222390 ATGTGATTACATGTAAGTCCATGTCTAGGACACTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACA-TGGCATCGTAT
* * *
59222434 -TGTGATTACGTGCAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACA-TGGCATCGTAT
* * * * * *
59222476 ATATGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTAGGACA-TGGCATCGTAT
* * * *
59222519 ATGTGATAACATGTAAGACTATATCTAGGATATGGCAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATGGCAT
59222557 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
42 7 0.07
43 94 0.93
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATGGCATCGTAT
Found at i:59225696 original size:54 final size:54
Alignment explanation
Indices: 59225614--59225726 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
59225604 TGGTAGTAAA
* * *
59225614 CACACAGGCAGAGACACGGCCTTGTGTCTCATCCGTGTGAAGGGCACGGTCTAG
1 CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
* *
59225668 CACAGAGGCAGAGACACGGTCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
1 CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
59225722 CACAC
1 CACAC
59225727 TGGCGTGTGC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.17
Consensus pattern (54 bp):
CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
Found at i:59226032 original size:20 final size:21
Alignment explanation
Indices: 59225993--59226032 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
59225983 GTTATAATGA
59225993 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
59226014 CCACACGGTCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
59226033 ATTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:59230311 original size:51 final size:51
Alignment explanation
Indices: 59230235--59230344 Score: 166
Period size: 51 Copynumber: 2.2 Consensus size: 51
59230225 CTGATCACAT
*
59230235 TTATCACTTGCCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGCCACTAATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
59230286 TTATCACTTGTCACTGATCAAATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGCCACTAATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
*
59230337 TTGTCACT
1 TTATCACT
59230345 GATCAGAAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
TTATCACTTGCCACTAATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:59238035 original size:51 final size:51
Alignment explanation
Indices: 59237964--59238123 Score: 241
Period size: 51 Copynumber: 3.2 Consensus size: 51
59237954 CTGATCACAT
*
59237964 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
59238015 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * * * *
59238066 TTGTCACTTATCATTGATTAGATAAGTGTAG-TGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
59238116 TTGTCACT
1 TTATCACT
59238124 GATCAGAAGT
Statistics
Matches: 102, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 25 0.25
51 77 0.75
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:59242595 original size:40 final size:40
Alignment explanation
Indices: 59242501--59242645 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
59242491 TACTCGAATG
*
59242501 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
59242542 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
59242582 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
59242622 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
59242646 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:59249335 original size:47 final size:47
Alignment explanation
Indices: 59249240--59249486 Score: 478
Period size: 47 Copynumber: 5.3 Consensus size: 47
59249230 CAGCCAAGAC
59249240 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59249286 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59249333 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59249380 AGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59249427 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59249474 AGTGTATATATGT
1 AGTGTATATATGT
59249487 ATGAATGTGA
Statistics
Matches: 198, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
46 26 0.13
47 172 0.87
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:59249491 original size:24 final size:23
Alignment explanation
Indices: 59249458--59249510 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 23
59249448 CTAATGGCCG
59249458 ATGTGATGAATGTGAAAGTGTATA
1 ATGT-ATGAATGTGAAAGTGTATA
59249482 TATGTATGAATGTGAAAGTGTATA
1 -ATGTATGAATGTGAAAGTGTATA
59249506 ATGTA
1 ATGTA
59249511 ATAAGGCCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 5 0.18
24 19 0.68
25 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (23 bp):
ATGTATGAATGTGAAAGTGTATA
Found at i:59249529 original size:70 final size:72
Alignment explanation
Indices: 59249411--59249559 Score: 275
Period size: 70 Copynumber: 2.1 Consensus size: 72
59249401 CTAATGGCCG
*
59249411 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
59249476 TGTATAT
66 TGTATAT
59249483 ATGT-ATGAATGTGAAAGTGTATA-ATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
59249546 TGTATAT
66 TGTATAT
59249553 ATGTGAT
1 ATGTGAT
59249560 AAGGCCTAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
70 50 0.67
71 21 0.28
72 4 0.05
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (72 bp):
ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATAT
Found at i:59249529 original size:164 final size:166
Alignment explanation
Indices: 59249317--59249653 Score: 561
Period size: 164 Copynumber: 2.0 Consensus size: 166
59249307 CTAATGGCCG
*
59249317 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
59249382 TGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
* * * * *
59249447 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
131 CCGAATGGCCAACGTGATGAATGTGAAAGTGCATAA
59249483 ATGT-ATGAATGTGAAAGTGTATA-ATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
59249546 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
* *
59249611 CCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAA
131 CCGAATGGCCAACGTGATGAATGTGAAAGTGCATAA
59249647 ATGTGAT
1 ATGTGAT
59249654 AAGTCCCGAA
Statistics
Matches: 159, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
164 134 0.84
165 21 0.13
166 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (166 bp):
ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
CCGAATGGCCAACGTGATGAATGTGAAAGTGCATAA
Found at i:59249530 original size:117 final size:119
Alignment explanation
Indices: 59249364--59249605 Score: 452
Period size: 117 Copynumber: 2.1 Consensus size: 119
59249354 CTAATGGCCG
* *
59249364 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
59249429 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
59249483 ATGT-ATGAATGTGAAAGTGTATA-ATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
59249546 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
59249600 ATGTGA
1 ATGTGA
59249606 CAGGGCCGAG
Statistics
Matches: 120, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
117 96 0.80
118 20 0.17
119 4 0.03
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.31
Consensus pattern (119 bp):
ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:59249576 original size:47 final size:47
Alignment explanation
Indices: 59249483--59249656 Score: 244
Period size: 47 Copynumber: 3.7 Consensus size: 47
59249473 AAGTGTATAT
*
59249483 ATGT-ATGAATGTGAAAGTGTATA-ATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
59249528 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
59249575 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
59249622 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59249657 TCCCGAAGCG
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 4 0.03
46 19 0.17
47 92 0.80
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:59249830 original size:36 final size:37
Alignment explanation
Indices: 59249775--59249852 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
59249765 CCGAGCTCTA
* *
59249775 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
59249811 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59249848 AAGAC
1 AAGAC
59249853 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59252650 original size:47 final size:47
Alignment explanation
Indices: 59252556--59253094 Score: 965
Period size: 47 Copynumber: 11.5 Consensus size: 47
59252546 GTGTGTATAC
*
59252556 GTGAAAGTGTATATATGTGATAAGG-CTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
59252602 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252649 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252696 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
59252743 GTGAAAGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGATT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252789 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252836 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252883 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252930 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
59252977 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
59253024 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
59253071 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
59253095 TCCCGAAGGG
Statistics
Matches: 476, Mismatches: 15, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
46 70 0.15
47 406 0.85
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:59253268 original size:37 final size:37
Alignment explanation
Indices: 59253212--59253290 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
59253202 CCGAGCTCTA
* * *
59253212 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
59253249 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59253286 AAGAC
1 AAGAC
59253291 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59259092 original size:40 final size:40
Alignment explanation
Indices: 59258998--59259142 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
59258988 TACTCGAATG
*
59258998 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
59259039 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
59259079 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
59259119 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
59259143 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:59263388 original size:17 final size:17
Alignment explanation
Indices: 59263366--59263399 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
59263356 TTCTTCATGA
59263366 ATATCCCTTTAAAAAAT
1 ATATCCCTTTAAAAAAT
59263383 ATATCCCTTTAAAAAAT
1 ATATCCCTTTAAAAAAT
59263400 TACCCTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATCCCTTTAAAAAAT
Found at i:59265558 original size:9 final size:9
Alignment explanation
Indices: 59265546--59265570 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
59265536 TAAAAAATAC
59265546 TTTTTAATT
1 TTTTTAATT
59265555 TTTTTAATT
1 TTTTTAATT
59265564 TTTTTAA
1 TTTTTAA
59265571 AAAATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTAATT
Found at i:59278733 original size:28 final size:27
Alignment explanation
Indices: 59278693--59278756 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
59278683 CCTAAATAAT
59278693 AAAAATAAGCTTAAAGAGGAATAAAA-TA
1 AAAAATAAGCTTAAA-AGG-ATAAAAGTA
*
59278721 AAAAAT-AGTCTTAAAATGATAAAAGTA
1 AAAAATAAG-CTTAAAAGGATAAAAGTA
59278748 AAAACATAA
1 AAAA-ATAA
59278757 AAAATAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 6 0.19
27 10 0.32
28 14 0.45
29 1 0.03
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (27 bp):
AAAAATAAGCTTAAAAGGATAAAAGTA
Found at i:59280791 original size:38 final size:39
Alignment explanation
Indices: 59280570--59280791 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
59280560 TTGAATGCTG
* * * * * *
59280570 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
59280610 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
59280650 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
59280690 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
59280730 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
59280769 -ACGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
59280792 TGACGAGGAG
Statistics
Matches: 151, Mismatches: 24, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
38 20 0.13
39 16 0.11
40 105 0.70
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:59288611 original size:80 final size:78
Alignment explanation
Indices: 59288527--59288698 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
59288517 GGACTAAGAT
*
59288527 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
59288590 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
59288607 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
59288672 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
59288686 CCGAAGGCATTTG
1 CCGAAGGCATTTG
59288699 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
79 38 0.47
80 37 0.46
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:59288689 original size:39 final size:39
Alignment explanation
Indices: 59288474--59288696 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
59288464 TTGAATGCTG
* * * * * *
59288474 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
59288514 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
59288554 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
59288594 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
59288634 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
59288673 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
59288697 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 37 0.24
40 105 0.69
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:59288716 original size:79 final size:80
Alignment explanation
Indices: 59288554--59288731 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
59288544 AGATACAAGT
* * * *
59288554 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
59288619 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
59288634 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
59288698 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
59288713 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
59288732 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:59303749 original size:129 final size:130
Alignment explanation
Indices: 59303616--59303898 Score: 347
Period size: 129 Copynumber: 2.2 Consensus size: 130
59303606 TCGAGTATTA
* * **
59303616 CCTTCATTTTAAAGAGTTTTTAGAAGATACGAACGAAATTCTAAAGGGACATTCGATTGCTTTGA
1 CCTTCATTTTAAAGAGTTTTTAGAAGACACGAACGAAATTATAAAGGGACATTCGATCACTTTGA
* *
59303681 GCAAACGAGAAATTGCAACCCAGCACATTAGGGCACGATGCCGCG-AATTGTCAAATAT-ACATC
66 GCAAACGAGAAATTGCAACCCAACACATTAGGGCACGATGCCG-GAAATTGCCAAATATAACATC
59303744 G
130 G
* * * *
59303745 CCTTCATTTTAAAG-GATTTTTAGAAGACATGAACGAAATTATGAAGGGATATTCGATCATTTTG
1 CCTTCATTTTAAAGAG-TTTTTAGAAGACACGAACGAAATTATAAAGGGACATTCGATCACTTTG
* ** * * *
59303809 AGCAAACGGGAAATTGCAACCCAACATGTTATGGCACGATTCCGGAAATTGCCAAATATCAAACC
65 AGCAAACGAGAAATTGCAACCCAACACATTAGGGCACGATGCCGGAAATTGCCAAATAT--AACA
*
59303874 TTG
128 TCG
*
59303877 CCTTCATTTTAAAGAATTTTTA
1 CCTTCATTTTAAAGAGTTTTTA
59303899 AATGAATATT
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
128 2 0.02
129 104 0.80
132 24 0.18
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (130 bp):
CCTTCATTTTAAAGAGTTTTTAGAAGACACGAACGAAATTATAAAGGGACATTCGATCACTTTGA
GCAAACGAGAAATTGCAACCCAACACATTAGGGCACGATGCCGGAAATTGCCAAATATAACATCG
Found at i:59304939 original size:33 final size:33
Alignment explanation
Indices: 59304902--59304969 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
59304892 AGGGCTAAAT
59304902 TAATTTTATTATAAATTATAATGGATTGAAGAA
1 TAATTTTATTATAAATTATAATGGATTGAAGAA
59304935 TAATTTTATTATAAATTATAATGGATTGAAGAA
1 TAATTTTATTATAAATTATAATGGATTGAAGAA
59304968 TA
1 TA
59304970 TGCTTACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.43
Consensus pattern (33 bp):
TAATTTTATTATAAATTATAATGGATTGAAGAA
Found at i:59306988 original size:44 final size:44
Alignment explanation
Indices: 59306925--59307189 Score: 335
Period size: 44 Copynumber: 6.1 Consensus size: 44
59306915 CGGGAACACT
* *
59306925 AATCTGTTATTTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* * * *
59306969 AATCTG-TCATCTTCGATCTGCTCTCTGTCAACATAGAGATGCCA
1 AATCTGCT-ATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* * *
59307013 AATCTGC--TC---GATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* * *
59307052 AATCTGCTATCTTTGATCTGCTCTCCGCTAATACAGAGATCCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* *
59307096 AATCTGCTTTCTTTGATCTGCTCTCTGACAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* *
59307140 AATCTACTATCTTTGATCTGCTCTCCGCCAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
59307184 AATCTG
1 AATCTG
59307190 TAGGATTCGC
Statistics
Matches: 188, Mismatches: 26, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
39 32 0.17
41 2 0.01
42 2 0.01
43 1 0.01
44 151 0.80
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (44 bp):
AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
Found at i:59311007 original size:13 final size:13
Alignment explanation
Indices: 59310989--59311014 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59310979 ACACATTCGC
59310989 ACTTTTCCATCTT
1 ACTTTTCCATCTT
59311002 ACTTTTCCATCTT
1 ACTTTTCCATCTT
59311015 TCTTAGGGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (13 bp):
ACTTTTCCATCTT
Found at i:59319014 original size:132 final size:131
Alignment explanation
Indices: 59318765--59319120 Score: 394
Period size: 132 Copynumber: 2.7 Consensus size: 131
59318755 TCTTCGATTA
* * * * *
59318765 TTGAGCAAACGGGAAATCGCAACCCAGAACGA-TAGGGCATGATTCCTGAATT-TCCAAACATCG
1 TTGAGCAAACGGGAAATTGCAACCCAGCAC-ATTAGGGCACGATTCCCGAATTGT-CAAATATCG
** ** * * * *
59318828 AGTATTACCTTCATTTTAAA-GAGTTTTTAGAAGATACGAACGGAATTCTAAAGGGACATTCGAT
64 AACATCGCCTTCGTTTTAAAGGA-TTTTTAGAAGACACGAACGAAATTATAAAGGGACATTCGAT
**
59318892 TGCT
128 CACT
*
59318896 TTGAGCAAACGAGAAATTGCAACCCAGCACATTAGGGCACGATTCCACGAATTGTCAAATATCGA
1 TTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCACGATTCC-CGAATTGTCAAATATCGA
* * * *
59318961 ACATCGCCTTTGTTTTAAAGGATTTTTAGAAGACATGAACGAAATTATGAAGGGATATTCGATCA
65 ACATCGCCTTCGTTTTAAAGGATTTTTAGAAGACACGAACGAAATTATAAAGGGACATTCGATCA
*
59319026 TT
130 CT
* * * * *
59319028 TTGAGCAAACGGGAAATTGCAACCCAACACATTAGGGTACGATTCCGCAAATTGCCAAATATCAA
1 TTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCACGATTCC-CGAATTGTCAAATATCGA
* *
59319093 ACCTCGCCTTCGTTTTAAAGAATTTTTA
65 ACATCGCCTTCGTTTTAAAGGATTTTTA
59319121 AATGAATAAT
Statistics
Matches: 190, Mismatches: 31, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
130 1 0.01
131 40 0.21
132 146 0.77
133 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (131 bp):
TTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCACGATTCCCGAATTGTCAAATATCGAA
CATCGCCTTCGTTTTAAAGGATTTTTAGAAGACACGAACGAAATTATAAAGGGACATTCGATCAC
T
Found at i:59320114 original size:30 final size:30
Alignment explanation
Indices: 59320078--59320137 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
59320068 TTCCTGAGCC
59320078 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
59320108 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
59320138 CATATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:59320865 original size:49 final size:50
Alignment explanation
Indices: 59320800--59321045 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
59320790 AGGTATTGTG
* *
59320800 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGGTAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
59320850 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
59320900 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
59320950 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
59321000 -GGTCGCGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
59321046 GCTTCGGCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 81 0.48
50 49 0.29
51 39 0.23
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:59320937 original size:28 final size:28
Alignment explanation
Indices: 59320905--59320988 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
59320895 AACTTCGATC
59320905 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
59320933 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
59320955 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
59320983 ACGTGT
1 ACGTGT
59320989 ATCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:59325177 original size:46 final size:45
Alignment explanation
Indices: 59325127--59325299 Score: 195
Period size: 46 Copynumber: 3.8 Consensus size: 45
59325117 TGGTTGAGCA
59325127 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAC-G
* * * * ** * *
59325173 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAATTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GATGCGACG
59325220 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACG
* * *
59325266 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
59325300 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 4 0.04
46 63 0.61
47 31 0.30
48 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACG
Found at i:59325283 original size:93 final size:93
Alignment explanation
Indices: 59325124--59325294 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
59325114 GGATGGTTGA
* *
59325124 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGCCCGAACTCGTTGAGT
59325189 TGAGTCCGAGTTCGTGAAATGTAATTAG
66 TGAGTCCGAGTTCGTGAAATGTAATTAG
*
59325217 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-GCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACTGCCCGAACTCGTTGAG
*
59325281 TTGAGTTCGAGTTC
65 TTGAGTCCGAGTTC
59325295 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAATTAG
Found at i:59328891 original size:47 final size:47
Alignment explanation
Indices: 59328837--59329077 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
59328827 TTAGGATTTT
** * * *
59328837 ATGTGATGAATGTGAATGTGTATACATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
59328884 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59328931 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCGA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
59328978 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
59329025 ATATGATGAATATGAACATGCATATATATGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
59329072 ATGTGA
1 ATGTGA
59329078 AATATGTATG
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 176 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:59328912 original size:25 final size:25
Alignment explanation
Indices: 59328884--59328962 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
59328874 CGAATGGCCA
59328884 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
59328909 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
59328931 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
59328956 ATGTGAT
1 ATGTGAT
59328963 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:59328937 original size:22 final size:22
Alignment explanation
Indices: 59328866--59328937 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
59328856 GTATACATGA
59328866 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
59328888 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
59328913 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
59328935 GAT
1 GAT
59328938 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:59329140 original size:50 final size:48
Alignment explanation
Indices: 59329047--59329231 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
59329037 TGAACATGCA
*
59329047 TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
59329095 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
59329145 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
59329193 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
59329232 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:59329145 original size:141 final size:139
Alignment explanation
Indices: 59328866--59329130 Score: 331
Period size: 141 Copynumber: 1.9 Consensus size: 139
59328856 GTATACATGA
* * * *
59328866 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATATGATGAATATGAACATGCATATATATGATAAAGCCGAATGGCCA
* * * *
59328931 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCGAATGTGATGAATGTGAGCA
66 ATGTGATAAATGTGAACATGCA-ATATGTGATAAAGCCGAATGGCGAATGTGA-GAATATGAACA
59328996 TGCATATGTGT
129 TGCATATGTGT
* *
59329007 GATAAGGCCGAATGGCCAATATGATGAATATGAACATGCATATATATGGTAAAGCCGAATGGCTA
1 GATAAGGCCGAATGGCCAATATGATGAATATGAACATGCATATATATGATAAAGCCGAATGGCCA
* *
59329072 ATGTGA-AATATGTATGAGATATGC-ATATGTGGTAAAGCCGAATGGTC-AATGTGA-AATAT
66 ATGTGATAA-ATG--TGA-ACATGCAATATGTGATAAAGCCGAATGG-CGAATGTGAGAATAT
59329131 ATATATGAGA
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
140 5 0.05
141 68 0.63
142 26 0.24
143 4 0.04
144 5 0.05
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (139 bp):
GATAAGGCCGAATGGCCAATATGATGAATATGAACATGCATATATATGATAAAGCCGAATGGCCA
ATGTGATAAATGTGAACATGCAATATGTGATAAAGCCGAATGGCGAATGTGAGAATATGAACATG
CATATGTGT
Found at i:59329162 original size:98 final size:98
Alignment explanation
Indices: 59329047--59329228 Score: 303
Period size: 98 Copynumber: 1.9 Consensus size: 98
59329037 TGAACATGCA
59329047 TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
59329112 AATGG-TCAATGTGAAATATATATATGAGATATG
66 AATGGCT-AATGTGAAATATATATATGAGATATG
* * **
59329145 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATTTATATGTGGTAAAGCCG
1 TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
*
59329210 AATGGCTAGTGTGAAATAT
66 AATGGCTAATGTGAAATAT
59329229 GTAGGCGATG
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 77 0.99
99 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATATATATGAGATATG
Found at i:59329486 original size:37 final size:37
Alignment explanation
Indices: 59329378--59329486 Score: 209
Period size: 37 Copynumber: 2.9 Consensus size: 37
59329368 GGAAATATAT
*
59329378 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
59329415 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
59329452 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
59329487 CGTCTGAGCT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:59331040 original size:40 final size:40
Alignment explanation
Indices: 59330757--59331028 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
59330747 GAGAATTGAG
* * *
59330757 AGTGATATACCCGGGCTAAGTACCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
59330797 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59330837 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
59330877 AGTGACGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59330917 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
59330957 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
59330997 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
59331029 ATCCTGCTGG
Statistics
Matches: 221, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:59334102 original size:47 final size:47
Alignment explanation
Indices: 59334048--59334335 Score: 443
Period size: 47 Copynumber: 6.1 Consensus size: 47
59334038 TTAGGATTTT
** * * *
59334048 ATGTGATGAATGTGAATGTGTATACATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
59334095 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59334142 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59334189 ATGTGATGAATG-GTAACATGCATATATGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTG-AACATGCATATATGTGATAAGGCCGAATGGCCA
* *
59334236 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
59334283 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
59334330 ATGTGA
1 ATGTGA
59334336 AATATGTATG
Statistics
Matches: 222, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 220 0.99
48 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:59334148 original size:22 final size:22
Alignment explanation
Indices: 59334077--59334148 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
59334067 GTATACATGA
59334077 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
59334099 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
59334124 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
59334146 GAT
1 GAT
59334149 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:59334398 original size:50 final size:48
Alignment explanation
Indices: 59334305--59334489 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
59334295 TGAACATGCA
59334305 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
59334353 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
59334403 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
59334451 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
59334490 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:59334419 original size:98 final size:98
Alignment explanation
Indices: 59334305--59334486 Score: 321
Period size: 98 Copynumber: 1.9 Consensus size: 98
59334295 TGAACATGCA
59334305 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
59334370 AATGG-TCAATGTGAAATATATATATGAGATATG
66 AATGGCT-AATGTGAAATATATATATGAGATATG
* *
59334403 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
*
59334468 AATGGCTAGTGTGAAATAT
66 AATGGCTAATGTGAAATAT
59334487 GTAGGCGATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 79 0.99
99 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATATATATGAGATATG
Found at i:59334780 original size:37 final size:37
Alignment explanation
Indices: 59334635--59334779 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
59334625 GGAAATATAT
*
59334635 TCCGGGTAAGACCCGATGACTACGTGTTGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
59334672 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
59334709 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
59334746 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
59334780 TCGTCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:59336666 original size:15 final size:15
Alignment explanation
Indices: 59336646--59336701 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
59336636 GTATCTTGGG
59336646 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
59336661 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
59336676 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
59336691 TTTCTTTATTC
1 TTTCTTTATTC
59336702 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:59339151 original size:46 final size:46
Alignment explanation
Indices: 59339101--59339269 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
59339091 TGAGCATACG
59339101 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
** * * * *
59339147 AACTCGTTGAGTTGAGTTTGAGTTC-GTGA--AATG-TAATTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCA
* *
59339194 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
* *
59339240 AGCTCGTTGATTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
59339270 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 54 0.55
47 27 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
Found at i:59342559 original size:27 final size:26
Alignment explanation
Indices: 59342527--59342701 Score: 179
Period size: 27 Copynumber: 6.5 Consensus size: 26
59342517 AACCCTAAAA
* *
59342527 TAGGTAAAATGATCGTAATACCCCTT
1 TAGGTAAAATGACCGTAATACCCCTG
* * *
59342553 TATGGTAAAATGACGGTAATGCCCTTG
1 TA-GGTAAAATGACCGTAATACCCCTG
* *
59342580 TAGAGTAAAATGACCGTAATGCCTCTG
1 TAG-GTAAAATGACCGTAATACCCCTG
*
59342607 TAGAGTAAAATGACCGTAATACCCCTA
1 TAG-GTAAAATGACCGTAATACCCCTG
* *
59342634 TAGAGTAAAATGACCATAATGCCCCTG
1 TAG-GTAAAATGACCGTAATACCCCTG
** *
59342661 TAGGGTAAAATGACTATAATACCTCTG
1 TA-GGTAAAATGACCGTAATACCCCTG
59342688 TATGGTAAAATGAC
1 TA-GGTAAAATGAC
59342702 GATTATGCCC
Statistics
Matches: 128, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.02
27 124 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (26 bp):
TAGGTAAAATGACCGTAATACCCCTG
Found at i:59342669 original size:81 final size:81
Alignment explanation
Indices: 59342529--59342701 Score: 233
Period size: 81 Copynumber: 2.1 Consensus size: 81
59342519 CCCTAAAATA
* * ** *
59342529 GGTAAAATGATCGTAATACCCCTTTATGGTAAAATGACGGTAATGCCCTTGTAGAGTAAAATGAC
1 GGTAAAATGACCGTAATACCCCTATATGGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAC
* *
59342594 CGTAATGCCTCTGTA-
66 CATAATACCTCTGTAT
*
59342609 GAGTAAAATGACCGTAATACCCCTATA-GAGTAAAATGACCATAATGCCCCTGTAGGGTAAAATG
1 G-GTAAAATGACCGTAATACCCCTATATG-GTAAAATGACCATAATGCCCCTGTAGAGTAAAATG
*
59342673 ACTATAATACCTCTGTAT
64 ACCATAATACCTCTGTAT
59342691 GGTAAAATGAC
1 GGTAAAATGAC
59342702 GATTATGCCC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
80 2 0.02
81 78 0.96
82 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (81 bp):
GGTAAAATGACCGTAATACCCCTATATGGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAC
CATAATACCTCTGTAT
Found at i:59369821 original size:76 final size:79
Alignment explanation
Indices: 59369724--59369905 Score: 282
Period size: 76 Copynumber: 2.3 Consensus size: 79
59369714 GCTACTCGTT
* *
59369724 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGA-CTTAGTCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
59369787 GATA-GTCAC-TAGCA
64 GATAGGTCACTTAGCA
*
59369801 CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
59369866 TATGGTCACTTAGCA
66 TA-GGTCACTTAGCA
59369881 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
59369906 CATCATTCGA
Statistics
Matches: 96, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
76 44 0.46
77 18 0.19
79 5 0.05
80 29 0.30
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
TAGGTCACTTAGCA
Found at i:59369852 original size:40 final size:40
Alignment explanation
Indices: 59369724--59369905 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
59369714 GCTACTCGTT
* * *
59369724 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
59369764 CAAATGCCTTC-GGACTTAGTCCGG--ATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
59369801 CAAA-GCCTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
59369840 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
59369881 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59369906 CATCATTCGA
Statistics
Matches: 120, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
36 6 0.05
37 26 0.22
38 1 0.01
39 28 0.23
40 47 0.39
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:59377910 original size:78 final size:80
Alignment explanation
Indices: 59377769--59377948 Score: 224
Period size: 78 Copynumber: 2.3 Consensus size: 80
59377759 TACTCGTTCA
* **
59377769 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
59377834 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
59377849 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
59377911 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
59377927 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
59377949 GACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 50 0.57
79 22 0.25
80 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:59377950 original size:40 final size:40
Alignment explanation
Indices: 59377748--59377950 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
59377738 CGGAATTTAA
** *
59377748 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59377788 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59377828 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59377867 CCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
59377906 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
59377946 CCGGA
1 CCGGA
59377951 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.01
38 22 0.16
39 21 0.15
40 84 0.60
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59380395 original size:27 final size:27
Alignment explanation
Indices: 59380365--59380510 Score: 116
Period size: 27 Copynumber: 5.4 Consensus size: 27
59380355 AAATTGTACA
* *
59380365 GCACTAAGTGTGCGATTCGATTATGTT
1 GCACTAAGTGTGCGATTCGACTATGTG
*** *
59380392 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGATTCGACTATG-TG
* *
59380419 GCACTAAGTGTGCGAATT-GACCATGCG
1 GCACTAAGTGTGCG-ATTCGACTATGTG
* * *
59380446 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGATTC-GACTATGTG
* * * *
59380474 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTCGACTATGTG
59380501 GCACTAAGTG
1 GCACTAAGTG
59380511 ATTACGTGGC
Statistics
Matches: 92, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
26 2 0.02
27 68 0.74
28 22 0.24
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTCGACTATGTG
Found at i:59380425 original size:54 final size:54
Alignment explanation
Indices: 59380364--59380510 Score: 163
Period size: 54 Copynumber: 2.7 Consensus size: 54
59380354 TAAATTGTAC
*
59380364 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAA-TATG-
1 AGCACTAAGTGTGCGATT-GATTATGTGGCACTAAGTGTGCGAAAAGAACTATGT
** * ***
59380417 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGATTATGTGGCACTAAGTGTGCGAAAAGAACTATGT
* *
59380473 AGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTG
1 AGCACTAAGTGTGCGA-TTGATTATGTGGCACTAAGTG
59380511 ATTACGTGGC
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
53 1 0.01
54 38 0.49
55 37 0.48
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGATTATGTGGCACTAAGTGTGCGAAAAGAACTATGT
Found at i:59380486 original size:28 final size:27
Alignment explanation
Indices: 59380419--59380488 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
59380409 AGAATATGAT
* *
59380419 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
59380446 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
59380474 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
59380489 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:59380514 original size:18 final size:18
Alignment explanation
Indices: 59380491--59380528 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
59380481 GGGTGCGATT
59380491 TGATTACGTGGCACTAAG
1 TGATTACGTGGCACTAAG
*
59380509 TGATTACGTGGCACTGAG
1 TGATTACGTGGCACTAAG
59380527 TG
1 TG
59380529 TGCGAGTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (18 bp):
TGATTACGTGGCACTAAG
Found at i:59388556 original size:28 final size:27
Alignment explanation
Indices: 59388489--59388558 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
59388479 AGAATATGAT
* *
59388489 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
59388516 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
59388544 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
59388559 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:59388574 original size:55 final size:53
Alignment explanation
Indices: 59388434--59388585 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
59388424 TAAATTGTAC
* *
59388434 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
* ** * ***
59388487 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAA-TATG
* *
59388542 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
59388586 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
Found at i:59388590 original size:27 final size:27
Alignment explanation
Indices: 59388435--59388590 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
59388425 AAATTGTACA
* *
59388435 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
59388462 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
59388489 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
59388516 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
59388544 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
59388571 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
59388591 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:59392609 original size:42 final size:42
Alignment explanation
Indices: 59392560--59392899 Score: 432
Period size: 42 Copynumber: 8.1 Consensus size: 42
59392550 TGAACGTTGA
*
59392560 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGT
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
** *
59392602 CATCGTATCTGATTTCGTGTAAGATAATGTTTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
59392644 CATCGTATTTGATTTTGTGTAAGACCATGTCTAGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* *
59392686 CATCGTATC-GAATTTTGTGTAATACCATGTCTGGGACATCGG
1 CATCGTATCTG-ATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * *
59392728 CATCGTATCTAATTTTGTGTAAGACCATGTTTGGGACATCAG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
*
59392770 CATCTTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * **
59392812 CATCATATCTGATTTCGTGTAAGACCATGTCTGGGATAGAGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * * *
59392854 CATCG-ATACTGAATTACATGTAAGACCACGTCTGAGACGTCGG
1 CATCGTAT-CTG-ATTTCGTGTAAGACCATGTCTGGGACATCGG
59392897 CAT
1 CAT
59392900 TGTACCCGTT
Statistics
Matches: 259, Mismatches: 35, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
41 3 0.01
42 230 0.89
43 26 0.10
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
Found at i:59394944 original size:29 final size:28
Alignment explanation
Indices: 59394890--59394983 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
59394880 ATTGCATGAC
*
59394890 TATGAATGTGATTGGGCCTAAGGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
59394918 TTTGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
* * *
59394947 TATGAAAGAGATTGGGCCTAGTGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
59394975 TATGCATGT
1 TATGAATGT
59394984 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 32 0.57
29 24 0.43
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:59399317 original size:16 final size:16
Alignment explanation
Indices: 59399296--59399327 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
59399286 TCGCCAAATC
*
59399296 TCGAAATGTCGAAAAG
1 TCGAAATGCCGAAAAG
59399312 TCGAAATGCCGAAAAG
1 TCGAAATGCCGAAAAG
59399328 CCAAAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.16
Consensus pattern (16 bp):
TCGAAATGCCGAAAAG
Found at i:59406947 original size:42 final size:42
Alignment explanation
Indices: 59406875--59407370 Score: 679
Period size: 42 Copynumber: 11.8 Consensus size: 42
59406865 AGAACATTGA
* *
59406875 CATCATATTTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
**
59406917 CATCGTATCTGATTTCGTGTAAGATAATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * *
59406959 CATCATATTTGATTTTGTGTAAGACCATGTCTAGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
*
59407001 CATTGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* *
59407043 CATTGTATCTGATTTCGTGTAATACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* *
59407085 CATCGTATTTGATTTCGTGTAAGACCATGTCTGGGACATTGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
** *
59407127 CATCGTATCTGATTTTATGTAAGACCATGTCTGGGACATCGC
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
*
59407169 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACGTCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * * *
59407211 CATCGTATCTAATTTCGTCTAAGAGCTTGTCTGGGACATCAG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * *
59407253 CATCATATCTGTTTTGGTGTAAGACCATGTTTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* **
59407295 CATCGTATCTGATTTCGTGTAAGACCCTGTCTGGGACAGAGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
59407337 CATCG-ATACTGAATTACATGTAAGACCACGTCTG
1 CATCGTAT-CTG-ATTTCGTGTAAGACCATGTCTG
59407371 AGATGTCAGC
Statistics
Matches: 397, Mismatches: 55, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
41 2 0.01
42 377 0.95
43 18 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
Found at i:59408470 original size:52 final size:52
Alignment explanation
Indices: 59408387--59408498 Score: 188
Period size: 52 Copynumber: 2.2 Consensus size: 52
59408377 GCGTGTCATA
*
59408387 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCTATGTTTGT
1 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
* *
59408439 TGGCCGTGGGCTTAAGTCAGTAGCCATCTAAGTATCACACGGCCGTGTTTGT
1 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
*
59408491 TGGTCGTG
1 TGGCCGTG
59408499 TGTAAAAGTC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (52 bp):
TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
Found at i:59408508 original size:52 final size:52
Alignment explanation
Indices: 59408387--59408511 Score: 171
Period size: 52 Copynumber: 2.4 Consensus size: 52
59408377 GCGTGTCATA
* *
59408387 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCTATGTTTGT
1 TGGCCGTGGGCTAAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
* * *
59408439 TGGCCGTGGGCTTAAGTCAGTAGCCATCTAAGTATCACACGGCCGTGTTTGT
1 TGGCCGTGGGCTAAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
* *
59408491 TGGTCGTGTG-TAAAAGTCAGT
1 TGGCCGTGGGCT-AAAGTCAGT
59408512 CTATATACTT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 1 0.02
52 65 0.98
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (52 bp):
TGGCCGTGGGCTAAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
Found at i:59414193 original size:46 final size:45
Alignment explanation
Indices: 59414050--59414193 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 45
59414040 CCCGCCCATA
*
59414050 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATC-CT
* * *** *
59414099 --CGAACTCGGACTCAACTCAACGAGTTTGGACATTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC-T
59414142 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACTATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC-ATCCT
59414189 AGTGA
1 AGTGA
59414194 CATGTCACTT
Statistics
Matches: 75, Mismatches: 13, Indels: 17
0.71 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 5 0.07
46 35 0.47
47 29 0.39
48 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCT
Found at i:59425672 original size:48 final size:48
Alignment explanation
Indices: 59425597--59425961 Score: 371
Period size: 48 Copynumber: 7.6 Consensus size: 48
59425587 AGGGTAAATT
* * * *
59425597 GCCGATGCCATATCCCAGACATCGTCTTACACTGGCTCACAT-GTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GAG
** * * * *
59425645 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTCGT-CTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GAG
* * * * * * *
59425693 GCCAATGCCATGTCCTAGACATGGTCTTACACTAGCACACAT-ATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GAG
* * *
59425741 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
* ** *
59425789 GCCGATGCCATGTCCCAGACATGGCCTTACACTGAATCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
* * * *
59425837 GCCGATGCCAT-TCCTAGACATGGTCTTACATTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
*
59425884 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATG-AG
* * *
59425932 GCCAAAGCCATGTCCCAAACATGGTCTTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
59425962 GCTAGCACAC
Statistics
Matches: 269, Mismatches: 45, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 40 0.15
48 227 0.84
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
Found at i:59425915 original size:143 final size:143
Alignment explanation
Indices: 59425600--59425961 Score: 439
Period size: 143 Copynumber: 2.5 Consensus size: 143
59425590 GTAAATTGCC
* * * * *
59425600 GATGCCATATCCCAGACATCGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTCCCAGA
* *
59425664 CATGGTCTTACACTACCTCTCGTCTCAATGCCAATGCCATGTCCTAGACATGGTCTTACACTAGC
65 CATGGTCTTACACTACATCTCG-ATCAATGCCAATGCCATGTCCTAGACATGGTCTTACACTAGC
59425729 ACACATATCAACGCT
129 ACACATATCAACGCT
*
59425744 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
* * *
59425809 ATGGCCTTACACTGA-ATCTC-AT-AATGTGGCCGATGCCAT-TCCTAGACATGGTCTTACATTA
66 ATGGTCTTACACT-ACATCTCGATCAA--T-GCCAATGCCATGTCCTAGACATGGTCTTACACTA
* * ***
59425870 GCTCTCATAAT-GTGGCT
127 GCACACAT-ATCAACGCT
* * * *
59425887 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTAGCCAAAGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
59425952 ATGGTCTTAC
66 ATGGTCTTAC
59425962 GCTAGCACAC
Statistics
Matches: 190, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
141 2 0.01
142 1 0.01
143 100 0.53
144 85 0.45
145 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (143 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTACATCTCGATCAATGCCAATGCCATGTCCTAGACATGGTCTTACACTAGCAC
ACATATCAACGCT
Found at i:59443188 original size:48 final size:48
Alignment explanation
Indices: 59443120--59443450 Score: 262
Period size: 48 Copynumber: 6.9 Consensus size: 48
59443110 TAATGTGGTG
* **
59443120 ATGCCATGTCCTAGACATGGTCTTACACTAGCATACATATCAACACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAGGCCA
* * ** *
59443168 ATGCCATGTCCCAGATATGGTCTTACACTTA-C-TCTCATAAT-GTGGCTA
1 ATGCCATGTCCCAGACATGGTCTTACAC-TAGCAT-ACAT-ATCAAGGCCA
* *
59443216 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAGGCCA
*** * * * ** *
59443264 ATGCCATGTTTTAGACATGGTCCTACACTGGC-TCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACAT-ATCAAGGCCA
* * * * ** *
59443312 ATGCCATGTCCCAAACATGGTCTTACACTAGAACACATACCAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAGGCCA
* * *
59443360 ATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAAT-ATGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACAT-ATCAAGGCCA
* * *
59443408 GTGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAA
59443451 CCAATTGTCA
Statistics
Matches: 215, Mismatches: 54, Indels: 28
0.72 0.18 0.09
Matches are distributed among these distances:
47 9 0.04
48 198 0.92
49 8 0.04
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAGGCCA
Found at i:59443254 original size:96 final size:96
Alignment explanation
Indices: 59443070--59443451 Score: 514
Period size: 96 Copynumber: 4.0 Consensus size: 96
59443060 TGGTAAATTG
* * * ** *
59443070 CCGATGCCATGGCCCAGGCATGGTCTTACATTGGCTCTCATAATGTGG-TGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCCAG
*
59443134 ACATGGTCTTACACTAGCATACATATCAACA
66 ACATGGTCTTACACTAGCACACATATCAACA
* * ** *
59443165 CCAATGCCATGTCCCAGATATGGTCTTACACTTACTCTCATAATGTGGCTAATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCCAG
* **
59443230 ACATGGTCTTACACTAGCATACATATCAATG
66 ACATGGTCTTACACTAGCACACATATCAACA
*** * * *
59443261 CCGATGCCATGTTTTAGACATGGTCCTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCCAG
* * *
59443326 ACATGGTCTTACACTAGAACACATACCAATA
66 ACATGGTCTTACACTAGCACACATATCAACA
* *
59443357 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCAGTGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCCAG
*
59443422 ACATAGTCTTACACTAGCACACATATCAAC
66 ACATGGTCTTACACTAGCACACATATCAAC
59443452 CAATTGTCAT
Statistics
Matches: 248, Mismatches: 38, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
95 41 0.17
96 207 0.83
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCCAG
ACATGGTCTTACACTAGCACACATATCAACA
Found at i:59452552 original size:47 final size:47
Alignment explanation
Indices: 59452495--59452826 Score: 486
Period size: 47 Copynumber: 7.1 Consensus size: 47
59452485 TTAGGATTTT
** * * * * *
59452495 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGTCGAATGACAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
59452542 ATTTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59452589 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59452636 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
59452683 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59452730 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
59452777 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
59452824 ATG
1 ATG
59452827 CGAAATTTGT
Statistics
Matches: 265, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 262 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:59452619 original size:25 final size:25
Alignment explanation
Indices: 59452590--59452667 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
59452580 GAATGGCCAA
59452590 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
59452615 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
59452637 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
59452662 TGTGAT
1 TGTGAT
59452668 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:59452642 original size:22 final size:22
Alignment explanation
Indices: 59452615--59452736 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
59452605 CATGCATATG
59452615 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
59452637 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
59452660 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* * *
59452684 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
59452709 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
59452731 TGTGAT
1 TGTGAT
59452737 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 23 0.31
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:59452783 original size:22 final size:22
Alignment explanation
Indices: 59452708--59452783 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
59452698 ACATGCATAT
*
59452708 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
59452730 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
59452754 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
59452777 ATGTGAT
1 ATGTGAT
59452784 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:59452856 original size:46 final size:46
Alignment explanation
Indices: 59452800--59452936 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
59452790 GGAAGTGTAT
*
59452800 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATTTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* **
59452846 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
59452892 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
59452937 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:59454727 original size:29 final size:29
Alignment explanation
Indices: 59454683--59454782 Score: 132
Period size: 29 Copynumber: 3.5 Consensus size: 29
59454673 GAAAGCATGA
* *
59454683 ATATGAATGTGGTTTGGGCATAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
59454712 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
59454741 ATATGGATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
59454769 ATATGCATGT-ATTT
1 ATATGAATGTGATTT
59454783 AGACTTGTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 25 0.40
29 37 0.59
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:59459238 original size:29 final size:29
Alignment explanation
Indices: 59459196--59459263 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
59459186 GAAGGTATGA
59459196 ATATGAATGTGATTGGGGCCTAATAGGCC
1 ATATGAATGTGATTGGGGCCTAATAGGCC
* * *
59459225 ATATGAATGTGATTTGGGCCTAGTGGGCC
1 ATATGAATGTGATTGGGGCCTAATAGGCC
*
59459254 ATATGCATGT
1 ATATGAATGT
59459264 ATGTAGACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTGGGGCCTAATAGGCC
Found at i:59463718 original size:29 final size:29
Alignment explanation
Indices: 59463676--59463767 Score: 148
Period size: 29 Copynumber: 3.2 Consensus size: 29
59463666 GAAAGCATGA
59463676 ATATGAATGCGATTTGGGCCTAATGGGCC
1 ATATGAATGCGATTTGGGCCTAATGGGCC
*
59463705 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGCGATTTGGGCCTAATGGGCC
* * *
59463734 AAATGAATGCGATTTGGGCCTAGTGGGAC
1 ATATGAATGCGATTTGGGCCTAATGGGCC
59463763 ATATG
1 ATATG
59463768 CATGTAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
ATATGAATGCGATTTGGGCCTAATGGGCC
Found at i:59469203 original size:24 final size:24
Alignment explanation
Indices: 59469176--59469223 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
59469166 ATAAACGGTT
59469176 TTGATTGAATT-TACATAAATGATC
1 TTGATTG-ATTATACATAAATGATC
*
59469200 TTGATTGATTATACATGAATGATC
1 TTGATTGATTATACATAAATGATC
59469224 CTTATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (24 bp):
TTGATTGATTATACATAAATGATC
Found at i:59469639 original size:17 final size:17
Alignment explanation
Indices: 59469617--59469651 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
59469607 GCTTAATTAA
*
59469617 GTAAAAAGTACTAAATC
1 GTAAAAAGGACTAAATC
59469634 GTAAAAAGGACTAAATC
1 GTAAAAAGGACTAAATC
59469651 G
1 G
59469652 AAGTTCTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.20
Consensus pattern (17 bp):
GTAAAAAGGACTAAATC
Found at i:59480157 original size:149 final size:149
Alignment explanation
Indices: 59479887--59480338 Score: 796
Period size: 149 Copynumber: 3.0 Consensus size: 149
59479877 CATTAAAGTT
*
59479887 TCATAGCTATTTAACACCTTTACTACTAGAACTCTAATTTTGTACCTTTTACGATTTAGTCGCAA
1 TCATAGCTATTTAACACCTTTACTACTAGAACTCTAATTTTGCACCTTTTACGATTTAGTCGCAA
59479952 AATTAAGCATGCAAATGTCAAAATTTCTTAACGAAATTTTTAGACGACCTCACTAACGTTCCATA
66 AATTAAGCATGCAAATGTCAAAATTTCTTAACGAAATTTTTAGACGACCTCACTAACGTTCCATA
59480017 GACATTAAAATTATAATAC
131 GACATTAAAATTATAATAC
* * *
59480036 TCATAGTTATTTAACACCTTTACTACTAGAACTCTAATTTTGCACCTTTTACGATTTAGTCACAG
1 TCATAGCTATTTAACACCTTTACTACTAGAACTCTAATTTTGCACCTTTTACGATTTAGTCGCAA
* * *
59480101 AATTAAGCATGCAAATGTCAAATTTTCTTAATGAAATTTTTAAACGACCTCACTAACGTTCCATA
66 AATTAAGCATGCAAATGTCAAAATTTCTTAACGAAATTTTTAGACGACCTCACTAACGTTCCATA
59480166 GACATTAAAATTATAATAC
131 GACATTAAAATTATAATAC
* * *
59480185 TCATAGCTATTCAACACCTTTACTACTAGAACTCTAATTCTGCACCTTTTACGATTTAGTCGCAC
1 TCATAGCTATTTAACACCTTTACTACTAGAACTCTAATTTTGCACCTTTTACGATTTAGTCGCAA
*
59480250 AATTAAGCATGCAAATGTCAAAATTTCTTAACGAAATTTTTAGACGAGCTCACTAACGTTCCATA
66 AATTAAGCATGCAAATGTCAAAATTTCTTAACGAAATTTTTAGACGACCTCACTAACGTTCCATA
*
59480315 GACATTAAAATCATAATAC
131 GACATTAAAATTATAATAC
59480334 TCATA
1 TCATA
59480339 TCAAATTTGT
Statistics
Matches: 286, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
149 286 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (149 bp):
TCATAGCTATTTAACACCTTTACTACTAGAACTCTAATTTTGCACCTTTTACGATTTAGTCGCAA
AATTAAGCATGCAAATGTCAAAATTTCTTAACGAAATTTTTAGACGACCTCACTAACGTTCCATA
GACATTAAAATTATAATAC
Found at i:59485687 original size:48 final size:47
Alignment explanation
Indices: 59485518--59485696 Score: 152
Period size: 48 Copynumber: 3.9 Consensus size: 47
59485508 GGGTTAATGA
* * * *
59485518 GATCCCGTATAAGACCATATCTGGGATATAGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT-GGT
* ** * * *
59485566 GTTATCATGTAAGACCATGTTTGGGATATGGCGTT-G-AT--AT-GT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATGGT
* * * * *
59485608 TATCCCATGTAAGACCATGTTTGGAACATGGCATTGGCATCGAGTGGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGA-TGGT
* *
59485656 GATCCCATGTAAGACCTTATCTGGGATATGGCGTTGGCATC
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
59485697 TTATTATGTG
Statistics
Matches: 102, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
42 30 0.29
43 1 0.01
44 4 0.04
46 3 0.03
47 2 0.02
48 62 0.61
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATGGT
Found at i:59488284 original size:42 final size:44
Alignment explanation
Indices: 59488161--59488308 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 44
59488151 GAGACATCGT
* * * *
59488161 GTAAGACCGTGCCTAGGACACAGGCCTCGATTGAGATTTACGTA
1 GTAAGACCATGTCTGGGACACAGGCCTCGATTAAGATTTACGTA
* * **
59488205 G-AAGACCATGTTTGGGACATC-GGCATC-ATATCTGATTT-CG-A
1 GTAAGACCATGTCTGGGACA-CAGGCCTCGAT-TAAGATTTACGTA
* *
59488246 GTAAGACCATGTCTGGGACACAGACCTCGATTAAGATTTATGTA
1 GTAAGACCATGTCTGGGACACAGGCCTCGATTAAGATTTACGTA
*
59488290 -TAAGACCATGTCTGAGACA
1 GTAAGACCATGTCTGGGACA
59488309 TCGGCATCGT
Statistics
Matches: 83, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
41 3 0.04
42 31 0.37
43 46 0.55
44 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
GTAAGACCATGTCTGGGACACAGGCCTCGATTAAGATTTACGTA
Found at i:59488361 original size:85 final size:85
Alignment explanation
Indices: 59488157--59488350 Score: 271
Period size: 85 Copynumber: 2.3 Consensus size: 85
59488147 GTCTGAGACA
* * * * *
59488157 TCGTGTAAGACCGTGCCTAGGACACAGGCCTCGATTGAGATTTACGTAGAAGACCATGTTTGGGA
1 TCGTGTAAGACCATGTCTAGGACACAGGCCTCGATTAAGATTTACGTAGAAGACCATGTCTGAGA
*
59488222 CATCGGCATCATATCTGATT
66 CATCGGCATCATATCTAATT
* * * * *
59488242 TCGAGTAAGACCATGTCTGGGACACAGACCTCGATTAAGATTTATGTATAAGACCATGTCTGAGA
1 TCGTGTAAGACCATGTCTAGGACACAGGCCTCGATTAAGATTTACGTAGAAGACCATGTCTGAGA
*
59488307 CATCGGCATCGTATCTAATT
66 CATCGGCATCATATCTAATT
*
59488327 TCGTGTAAGACCTTGTCTAGGACA
1 TCGTGTAAGACCATGTCTAGGACA
59488351 GGGGCATCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTAGGACACAGGCCTCGATTAAGATTTACGTAGAAGACCATGTCTGAGA
CATCGGCATCATATCTAATT
Found at i:59488379 original size:85 final size:85
Alignment explanation
Indices: 59488161--59488387 Score: 213
Period size: 85 Copynumber: 2.7 Consensus size: 85
59488151 GAGACATCGT
* * * * * * * * * *
59488161 GTAAGACCGTGCCTAGGACACAGGCCTCGATTGAGATTTACGTAGAAGACCATGTTTGGGACATC
1 GTAAGACCATGTCTAGGACACAGACATCGATTAAGAGTTACATATAAGACCATGTCTGAGACATC
*
59488226 GGCATCATATCTGATTTCGA
66 GGCATCATATCTAATTTCGA
* * * **
59488246 GTAAGACCATGTCTGGGACACAGACCTCGATTAAGATTTATGTATAAGACCATGTCTGAGACATC
1 GTAAGACCATGTCTAGGACACAGACATCGATTAAGAGTTACATATAAGACCATGTCTGAGACATC
* *
59488311 GGCATCGTATCTAATTTCGT
66 GGCATCATATCTAATTTCGA
* ** * * * *
59488331 GTAAGACCTTGTCTAGGACAGGGGCATCGA-TATTGAGTTACATGTAAGACCACGTCT
1 GTAAGACCATGTCTAGGACACAGACATCGATTA-AGAGTTACATATAAGACCATGTCT
59488388 AGGACGTTGG
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
84 2 0.02
85 115 0.98
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (85 bp):
GTAAGACCATGTCTAGGACACAGACATCGATTAAGAGTTACATATAAGACCATGTCTGAGACATC
GGCATCATATCTAATTTCGA
Done.