Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 177 of 311
Found at i:60350190 original size:27 final size:27
Alignment explanation
Indices: 60350154--60350236 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
60350144 GTCGTTAAGA
*
60350154 CCCCAGTTTGTAAGATTATCAAAATAC
1 CCCCAGTTTGTAAAATTATCAAAATAC
* *
60350181 CCCCAGTTTGTAAAATTATCGAAATAT
1 CCCCAGTTTGTAAAATTATCAAAATAC
*
60350208 CCCCAATTTGTAAAATTA-CAAAAATAC
1 CCCCAGTTTGTAAAATTATC-AAAATAC
60350235 CC
1 CC
60350237 TTGTAGTGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 1 0.02
27 48 0.98
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
CCCCAGTTTGTAAAATTATCAAAATAC
Found at i:60350246 original size:27 final size:27
Alignment explanation
Indices: 60350216--60350277 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60350206 ATCCCCAATT
60350216 TGTAAAATTACAAAAATACCCTTGTAG
1 TGTAAAATTACAAAAATACCCTTGTAG
**
60350243 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACAAAAATACCCTTGTAG
*
60350270 GGTAAAAT
1 TGTAAAAT
60350278 GATTGTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACAAAAATACCCTTGTAG
Found at i:60350772 original size:32 final size:32
Alignment explanation
Indices: 60350704--60350835 Score: 160
Period size: 32 Copynumber: 4.2 Consensus size: 32
60350694 TATTTACCAG
* * * *
60350704 TGGCTTGGTGACGATTATATTACAG-TATTGA
1 TGGCTTTGTGCCGATCATATTACAGCTACTGA
60350735 TGGCTTTGTGCCGATCATATTACAGCTACTGA
1 TGGCTTTGTGCCGATCATATTACAGCTACTGA
* * * *
60350767 TGGCTTTGTACCGATCATATTATAGTTACTGT
1 TGGCTTTGTGCCGATCATATTACAGCTACTGA
*
60350799 TGGCTTTCTGCCGATCATATTATC-GCTACTGA
1 TGGCTTTGTGCCGATCATATTA-CAGCTACTGA
60350831 TGGCT
1 TGGCT
60350836 GTAAGCTGTG
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
31 22 0.26
32 64 0.74
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (32 bp):
TGGCTTTGTGCCGATCATATTACAGCTACTGA
Found at i:60350900 original size:26 final size:26
Alignment explanation
Indices: 60350848--60350900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
60350838 AAGCTGTGTA
* **
60350848 TATTTCTGGCAGCTTTGCTGCGTTAT
1 TATTTCTGGCAGCTATGCTGCAATAT
60350874 TATTTCTGGCAGCTATGCTGCAATAT
1 TATTTCTGGCAGCTATGCTGCAATAT
60350900 T
1 T
60350901 GGTGTGTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (26 bp):
TATTTCTGGCAGCTATGCTGCAATAT
Found at i:60353787 original size:46 final size:46
Alignment explanation
Indices: 60353728--60353947 Score: 255
Period size: 46 Copynumber: 4.7 Consensus size: 46
60353718 ACATATCCGT
* * *
60353728 GCCGATGCATGTCCTAGACATGTCTTACGCTGGCT-TACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTTGAG
*
60353774 GCCGATGCATGTCCCAGACATGTTTTACACTAGCT-TACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTTGAG
* * * ** *
60353820 GCTGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGAG
* * ** *
60353866 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTTGAG
60353914 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
60353948 ACACACACAT
Statistics
Matches: 147, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
46 96 0.65
47 28 0.19
48 23 0.16
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGAG
Found at i:60353925 original size:94 final size:94
Alignment explanation
Indices: 60353675--60353947 Score: 286
Period size: 94 Copynumber: 2.9 Consensus size: 94
60353665 CATAGGGTAT
* ** * *
60353675 AATGCCGATTCCATGTCGTAGACATGGTTTTACACTGGTTCTCACATATCCGT-GCCGATGCATG
1 AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATA-AT--GTGGCCGATGCATG
* * * *
60353739 TCCTAGACATGTCTTACGCTGGCTTACATCTT
63 TCCCAGACATGTCTTACACTAGCTTACATCTC
* * * ** * *
60353771 GAGGCCGATG-CATGTCCCAGACAT-GTTTTACACTAGCT-TACATCTTGAGGCTGATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCT-CATAATGTGGCCGATGCATGTC
* *
60353833 CCAGGCATGTCTTACACTAGCTCT-CGTCTC
65 CCAGACATGTCTTACACTAGCT-TACATCTC
* *
60353863 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
60353928 CAGACATGTCTTACACTAGC
66 CAGACATGTCTTACACTAGC
60353948 ACACACACAT
Statistics
Matches: 143, Mismatches: 28, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
91 1 0.01
92 41 0.29
93 17 0.12
94 64 0.45
95 13 0.09
96 7 0.05
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (94 bp):
AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
CAGACATGTCTTACACTAGCTTACATCTC
Found at i:60360554 original size:74 final size:74
Alignment explanation
Indices: 60360446--60360614 Score: 239
Period size: 74 Copynumber: 2.3 Consensus size: 74
60360436 ACAGCCATGT
* * * **
60360446 CACATGCCCGTGTGCTAGGCTGTGTGGTTAATTAAATTATTTTGAAATTAGGTATAGGTTTCACA
1 CACACGCCCATGTGCTAGGCCGTGTGGTTAATTAAATTATTTCAAAATTAGGTATAGGTTTCACA
*
60360511 CTGCCAAGA
66 CGGCCAAGA
* * *
60360520 CACACTCCCATGTGCTAGGCCGTGTGGTTAATTAAATTCTTTCAAAATTAGGTGTAGGTTTCACA
1 CACACGCCCATGTGCTAGGCCGTGTGGTTAATTAAATTATTTCAAAATTAGGTATAGGTTTCACA
60360585 CGGCCAAGA
66 CGGCCAAGA
* *
60360594 CACACGCCCGTGTTCTAGGCC
1 CACACGCCCATGTGCTAGGCC
60360615 ATCTAGCACA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 83 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (74 bp):
CACACGCCCATGTGCTAGGCCGTGTGGTTAATTAAATTATTTCAAAATTAGGTATAGGTTTCACA
CGGCCAAGA
Found at i:60366300 original size:27 final size:27
Alignment explanation
Indices: 60366270--60366361 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
60366260 ATTACCAAAG
* *
60366270 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
60366297 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
60366324 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
60366351 TACCCTCGATT
1 TACCCTCGATT
60366362 GTGAAATTAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:60366478 original size:81 final size:81
Alignment explanation
Indices: 60366360--60366515 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
60366350 TTACCCTCGA
* * **
60366360 TTGTGAAATTACTGAAATACCTCTATAGTGTAGAATTACCAAAATACCCCT-AGTTTGTAAAATT
1 TTGTGAAATTACCGAAATACCTCTATAGTGTAAAATTACCAAAATACCCCTGA-TTTAAAAAATT
*
60366424 ACCAAAATACCACTGGT
65 ACAAAAATACCACTGGT
*
60366441 TTGTGAAATTACCGAAATACC-CT-TAATTTGTAAAATTACCAAAATACCCCTGATTTAAAAAAT
1 TTGTGAAATTACCGAAATACCTCTAT-A-GTGTAAAATTACCAAAATACCCCTGATTTAAAAAAT
60366504 TACAAAAATACC
64 TACAAAAATACC
60366516 CTTGACTTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
79 1 0.02
80 3 0.05
81 61 0.92
82 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (81 bp):
TTGTGAAATTACCGAAATACCTCTATAGTGTAAAATTACCAAAATACCCCTGATTTAAAAAATTA
CAAAAATACCACTGGT
Found at i:60366496 original size:27 final size:27
Alignment explanation
Indices: 60366388--60366530 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
60366378 ACCTCTATAG
*
60366388 TGTAGAATTACCAAAATACCCCT-AGTT
1 TGTAAAATTACCAAAATACCCCTGA-TT
* *
60366415 TGTAAAATTACCAAAATACCACTGGTT
1 TGTAAAATTACCAAAATACCCCTGATT
* * * *
60366442 TGTGAAATTACCGAAATACCCTTAATT
1 TGTAAAATTACCAAAATACCCCTGATT
60366469 TGTAAAATTACCAAAATACCCCTGATT
1 TGTAAAATTACCAAAATACCCCTGATT
** * *
60366496 TAAAAAATTACAAAAATACCCTTGACTT
1 TGTAAAATTACCAAAATACCCCTGA-TT
*
60366524 TCTAAAA
1 TGTAAAA
60366531 ATTATAGAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
27 88 0.93
28 7 0.07
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTGATT
Found at i:60366504 original size:54 final size:54
Alignment explanation
Indices: 60366393--60366599 Score: 191
Period size: 54 Copynumber: 3.8 Consensus size: 54
60366383 TATAGTGTAG
* * ***
60366393 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTAAAA
* * *
60366447 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTAAAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTAAAA
* * * * ** *
60366501 AATTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCTTTGGTTTACAA
1 AATTACCAAAATACCCTT-AGTTTGT-AAAATTACCA-AAATACCCCTGGTTTAAAA
** * * * *
60366557 AATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCC
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC
60366600 TTGTAGGATG
Statistics
Matches: 122, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
54 73 0.60
55 11 0.09
56 38 0.31
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTAAAA
Found at i:60366541 original size:29 final size:27
Alignment explanation
Indices: 60366393--60366572 Score: 92
Period size: 27 Copynumber: 6.6 Consensus size: 27
60366383 TATAGTGTAG
* **
60366393 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACAAAAATACCCCTGA-TTTAAAA
* * * ***
60366420 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACAAAAATACCCCTGATTTAAAA
** * * **
60366447 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACAAAAATACCCCTGATTTAAAA
*
60366474 AATTACCAAAATACCCCTGATTTAAAA
1 AATTACAAAAATACCCCTGATTTAAAA
* *
60366501 AATTACAAAAATACCCTTGACTTTCTAAA
1 AATTACAAAAATACCCCTGA-TTT-AAAA
* * ** * *
60366530 AATTATAGAAATACCTTTGGTTTACAA
1 AATTACAAAAATACCCCTGATTTAAAA
**
60366557 AATTACTGAAATACCC
1 AATTACAAAAATACCC
60366573 TTGGTTTGTA
Statistics
Matches: 124, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.80
28 6 0.05
29 19 0.15
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACAAAAATACCCCTGATTTAAAA
Found at i:60366675 original size:27 final size:27
Alignment explanation
Indices: 60366596--60366697 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
60366586 TTACCAAAAC
* * **
60366596 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCTTGTAGGGTAAAATGACTGTAAT
** * *
60366623 ACCCCTAATA-GGTAAAAAGACCGTAA-
1 A-CCCTTGTAGGGTAAAATGACTGTAAT
*
60366649 AGCCCTTGTAGGGTAAAGTGACTGTAAT
1 A-CCCTTGTAGGGTAAAATGACTGTAAT
*
60366677 ACCCTTGTATGGTAAAATGAC
1 ACCCTTGTAGGGTAAAATGAC
60366698 GAATATGCCC
Statistics
Matches: 56, Mismatches: 16, Indels: 6
0.72 0.21 0.08
Matches are distributed among these distances:
26 7 0.12
27 42 0.75
28 7 0.12
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
ACCCTTGTAGGGTAAAATGACTGTAAT
Found at i:60367560 original size:25 final size:24
Alignment explanation
Indices: 60367532--60367589 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
60367522 CAGTTTACCG
60367532 AAAAAGGCTTTGCCCCAGTTTATTA
1 AAAAAGGCTTTGCCCCAG-TTATTA
* *
60367557 AAAAGGGCTTTTCCCCAGTTATTA
1 AAAAAGGCTTTGCCCCAGTTATTA
*
60367581 AAAGAGGCT
1 AAAAAGGCT
60367590 AGGCCTCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 13 0.45
25 16 0.55
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTATTA
Found at i:60367578 original size:24 final size:24
Alignment explanation
Indices: 60367532--60367589 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
60367522 CAGTTTACCG
60367532 AAAAAGGCTTTGCCCCAGTTTATT
1 AAAAAGGCTTTGCCCCAGTTTATT
*
60367556 AAAAAGGGCTTTTCCCCAG-TTATT
1 AAAAA-GGCTTTGCCCCAGTTTATT
60367580 AAAAGAGGCT
1 AAAA-AGGCT
60367590 AGGCCTCCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 18 0.58
25 13 0.42
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATT
Found at i:60367847 original size:31 final size:30
Alignment explanation
Indices: 60367796--60367878 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
60367786 CGCTTACAGT
60367796 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
60367826 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
60367857 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
60367879 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 18 0.35
31 31 0.61
32 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:60375499 original size:17 final size:19
Alignment explanation
Indices: 60375477--60375515 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
60375467 CATATTCTCA
60375477 TTTTTT-TATT-TCTTCAT
1 TTTTTTGTATTCTCTTCAT
*
60375494 TTTTTTGTTTTCTCTTCAT
1 TTTTTTGTATTCTCTTCAT
60375513 TTT
1 TTT
60375516 GACAAACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.77
Consensus pattern (19 bp):
TTTTTTGTATTCTCTTCAT
Found at i:60376418 original size:23 final size:24
Alignment explanation
Indices: 60376374--60376420 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
60376364 GAATCCAAAT
*
60376374 CTTTTATTTATGTATAATATGCTA
1 CTTTTATTTATGTATAAAATGCTA
60376398 CTTTTATTT-T-TAATAAAATGCTA
1 CTTTTATTTATGT-ATAAAATGCTA
60376421 TTAAACAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 11 0.52
24 9 0.43
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (24 bp):
CTTTTATTTATGTATAAAATGCTA
Found at i:60376954 original size:47 final size:48
Alignment explanation
Indices: 60376901--60376994 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
60376891 TTTACCTGTG
60376901 GTTATGTAGAC-ATT-ATCAGCAAT-TATGTGGTGGCTTGTCCACAAATT
1 GTTATGT-GACTATTAATC-GCAATGTATGTGGTGGCTTGTCCACAAATT
* **
60376948 GTTATGTGGCTATTAATCGGTATGTATGTGGTGGCTTGTCCACAAAT
1 GTTATGTGACTATTAATCGCAATGTATGTGGTGGCTTGTCCACAAAT
60376995 GACGTGTTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
46 2 0.05
47 13 0.32
48 26 0.63
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.37
Consensus pattern (48 bp):
GTTATGTGACTATTAATCGCAATGTATGTGGTGGCTTGTCCACAAATT
Found at i:60377374 original size:9 final size:9
Alignment explanation
Indices: 60377360--60377392 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
60377350 GATTTGGGAC
60377360 TTTTATGGA
1 TTTTATGGA
60377369 TTTTAT-GA
1 TTTTATGGA
60377377 TTTTTATGGA
1 -TTTTATGGA
60377387 TTTTAT
1 TTTTAT
60377393 TATGGACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 18 0.82
10 2 0.09
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (9 bp):
TTTTATGGA
Found at i:60379446 original size:17 final size:17
Alignment explanation
Indices: 60379424--60379457 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
60379414 ATTTGTGCAT
60379424 GTAAATAAGATTTATAA
1 GTAAATAAGATTTATAA
60379441 GTAAATAAGATTTATAA
1 GTAAATAAGATTTATAA
60379458 ATGATTCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (17 bp):
GTAAATAAGATTTATAA
Found at i:60381009 original size:10 final size:10
Alignment explanation
Indices: 60380994--60381026 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
60380984 ACTATGACTA
60380994 TACCATCGAG
1 TACCATCGAG
60381004 TACCATCGAG
1 TACCATCGAG
60381014 TACCATCTGAG
1 TACCATC-GAG
60381025 TA
1 TA
60381027 ATACTAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (10 bp):
TACCATCGAG
Found at i:60390426 original size:43 final size:44
Alignment explanation
Indices: 60390360--60390447 Score: 110
Period size: 43 Copynumber: 2.0 Consensus size: 44
60390350 ATTTTAAGAC
* *
60390360 CTTTCAAAGATCACCGATGCTTTAA-ACA-TCTGCACACTTAGTG
1 CTTTCAAAGATCACCGAAGCTTTAACA-ATTCCGCACACTTAGTG
*
60390403 CTTT-AAAGATTAGCCGAAGCTTTAACAATTCCGCACACTTAGTG
1 CTTTCAAAGATCA-CCGAAGCTTTAACAATTCCGCACACTTAGTG
60390447 C
1 C
60390448 CATCTCAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
42 7 0.18
43 16 0.41
44 16 0.41
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (44 bp):
CTTTCAAAGATCACCGAAGCTTTAACAATTCCGCACACTTAGTG
Found at i:60393883 original size:27 final size:27
Alignment explanation
Indices: 60393852--60394029 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60393842 TAAATTGTAC
60393852 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60393879 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60393905 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60393933 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60393961 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60393988 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60394015 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60394030 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60393966 original size:82 final size:81
Alignment explanation
Indices: 60393853--60394008 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60393843 AAATTGTACA
* *
60393853 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60393917 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60393934 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60393999 TGCGAGTTGA
65 TGCGAATTGA
60394009 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60394020 original size:82 final size:81
Alignment explanation
Indices: 60393849--60394029 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60393839 GATTAAATTG
* *
60393849 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60393914 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60393930 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60393994 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60394012 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60394030 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60408587 original size:25 final size:25
Alignment explanation
Indices: 60408549--60408627 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
60408539 TCTCTCGAGT
*
60408549 CATATAATGAGAAGCTCATATGAGC
1 CATATAATGGGAAGCTCATATGAGC
* * * * *
60408574 CATGTAATGGGAAGCTTATTTGGGT
1 CATATAATGGGAAGCTCATATGAGC
** *
60408599 TGTATAATGGGAAGCTCATAAGAGC
1 CATATAATGGGAAGCTCATATGAGC
60408624 CATA
1 CATA
60408628 ATCAAGAAGC
Statistics
Matches: 38, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (25 bp):
CATATAATGGGAAGCTCATATGAGC
Found at i:60408689 original size:25 final size:25
Alignment explanation
Indices: 60408608--60408813 Score: 106
Period size: 25 Copynumber: 8.3 Consensus size: 25
60408598 TTGTATAATG
**
60408608 GGAAGCTCATAAGAGCCA-TAATCA
1 GGAAGCTCCGAAGAGCCATTAATCA
* * * * *
60408632 AGAAGCTCATG-CGAGCCAATAA-CG
1 GGAAGCTC-CGAAGAGCCATTAATCA
*
60408656 GGTAGCTCCGAAGAGCCATTAATCA
1 GGAAGCTCCGAAGAGCCATTAATCA
* * *
60408681 GGAAGCTCCAAATAGCCATTTATC-
1 GGAAGCTCCGAAGAGCCATTAATCA
*
60408705 GAGAAG-TTC-AAGCGAGCCA-T-ATCA
1 G-GAAGCTCCGAA--GAGCCATTAATCA
* * *
60408729 AGTAGCTCCGGAGAGCCATTAATCA
1 GGAAGCTCCGAAGAGCCATTAATCA
* * *
60408754 GGGAGCTCACAAAGAGCCTTTAATCA
1 GGAAGCTC-CGAAGAGCCATTAATCA
*
60408780 GAAAGCTCACGAAGAGCCATATAA-CA
1 GGAAGCTC-CGAAGAGCCAT-TAATCA
*
60408806 GGACGCTC
1 GGAAGCTC
60408814 ATAAGAGCTA
Statistics
Matches: 136, Mismatches: 32, Indels: 26
0.70 0.16 0.13
Matches are distributed among these distances:
23 15 0.11
24 36 0.26
25 44 0.32
26 38 0.28
27 3 0.02
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (25 bp):
GGAAGCTCCGAAGAGCCATTAATCA
Found at i:60408710 original size:74 final size:73
Alignment explanation
Indices: 60408608--60408788 Score: 199
Period size: 73 Copynumber: 2.5 Consensus size: 73
60408598 TTGTATAATG
* * * **
60408608 GGAAGCTCA-TAAGAGCC-ATAATCAAGAAGCTCATGCGAGCCAATAACGGGTAGCTCCGAAGAG
1 GGAAGCTCACAAAGAGCCTTTAATC-AGAAGCTCAAGCGAGCC-ATAACAAGTAGCTCCGAAGAG
60408671 CCATTAATCA
64 CCATTAATCA
* * * *
60408681 GGAAGCTC-CAAATAGCCATTT-ATCGAGAAGTTCAAGCGAGCCATATCAAGTAGCTCCGGAGAG
1 GGAAGCTCACAAAGAGCC-TTTAATC-AGAAGCTCAAGCGAGCCATAACAAGTAGCTCCGAAGAG
60408744 CCATTAATCA
64 CCATTAATCA
*
60408754 GGGAGCTCACAAAGAGCCTTTAATCAGAAAGCTCA
1 GGAAGCTCACAAAGAGCCTTTAATCAG-AAGCTCA
60408789 CGAAGAGCCA
Statistics
Matches: 89, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
73 53 0.60
74 35 0.39
75 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (73 bp):
GGAAGCTCACAAAGAGCCTTTAATCAGAAGCTCAAGCGAGCCATAACAAGTAGCTCCGAAGAGCC
ATTAATCA
Found at i:60408813 original size:26 final size:25
Alignment explanation
Indices: 60408666--60408814 Score: 85
Period size: 26 Copynumber: 5.9 Consensus size: 25
60408656 GGTAGCTCCG
60408666 AAGAGCCATTAATCAGGAAGCTC-CA
1 AAGAGCCATTAATCAGG-AGCTCACA
* * * *
60408691 AATAGCCATTTATCGAGAAGTTCA-A
1 AAGAGCCATTAATC-AGGAGCTCACA
** * *
60408716 GCGAGCCA-T-ATCAAGTAGCTC-CG
1 AAGAGCCATTAATC-AGGAGCTCACA
*
60408739 GAGAGCCATTAATCAGGGAGCTCACA
1 AAGAGCCATTAATCA-GGAGCTCACA
* * *
60408765 AAGAGCCTTTAATCAGAAAGCTCACG
1 AAGAGCCATTAATCAG-GAGCTCACA
60408791 AAGAGCCATATAA-CAGGACGCTCA
1 AAGAGCCAT-TAATCAGGA-GCTCA
60408815 TAAGAGCTAC
Statistics
Matches: 94, Mismatches: 20, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
23 16 0.17
24 3 0.03
25 33 0.35
26 39 0.41
27 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.18
Consensus pattern (25 bp):
AAGAGCCATTAATCAGGAGCTCACA
Found at i:60410208 original size:12 final size:12
Alignment explanation
Indices: 60410191--60410226 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
60410181 TGAAGGCATC
60410191 AAAACTCCATAT
1 AAAACTCCATAT
* *
60410203 AAAACTCCAAAC
1 AAAACTCCATAT
60410215 AAAACTCCATAT
1 AAAACTCCATAT
60410227 CTAATTCCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAACTCCATAT
Found at i:60413372 original size:40 final size:40
Alignment explanation
Indices: 60413309--60413607 Score: 383
Period size: 40 Copynumber: 7.5 Consensus size: 40
60413299 AAGCCAAGTA
* * * * *
60413309 CCTTCGGGATTTA-ACCGGATATAGCTA-CTCGCTCGAATC
1 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATG
* * * *
60413348 CCTTCGGGACATAGCTCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
60413388 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
*
60413428 CCTTCGGGACTTAGCCCGGATATAGCAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
* *
60413468 CCTTCGGGACTTAGCCCGGATATAGTAGCTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
* * *
60413508 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
60413548 CCTTCGGGACTTAGCCCGGA-ACTAGTCA-CTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-AGCT--CGCACAAATG
60413589 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60413608 TTATCATCCA
Statistics
Matches: 232, Mismatches: 22, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
39 13 0.06
40 190 0.82
41 25 0.11
42 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
Found at i:60421629 original size:16 final size:16
Alignment explanation
Indices: 60421608--60421639 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
60421598 CCCGGATATA
60421608 GTAGCTCGCACAAATG
1 GTAGCTCGCACAAATG
60421624 GTAGCTCGCACAAATG
1 GTAGCTCGCACAAATG
60421640 CCTTCGGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (16 bp):
GTAGCTCGCACAAATG
Found at i:60421735 original size:41 final size:40
Alignment explanation
Indices: 60421628--60421739 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
60421618 CAAATGGTAG
* * **
60421628 CTCGCACAAATGCCTTCGGGACTTAGCCTGGATGTAATAA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGAACTAATAA
* *
60421668 CTCGTACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGAACTAATAA
*
60421708 CTAGCGTA-AAATGCCTTCGGGATTTAGCCCGG
1 CT--CGTACAAATGCCTTCGGGACTTAGCCCGG
60421740 TTATCATCCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 36 0.57
41 23 0.37
42 4 0.06
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTCGTACAAATGCCTTCGGGACTTAGCCCGGAACTAATAA
Found at i:60422190 original size:11 final size:11
Alignment explanation
Indices: 60422176--60422200 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60422166 GAGCATCGAA
60422176 AAGAGGAACTC
1 AAGAGGAACTC
60422187 AAGAGGAACTC
1 AAGAGGAACTC
60422198 AAG
1 AAG
60422201 GTACTTAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (11 bp):
AAGAGGAACTC
Found at i:60424187 original size:48 final size:48
Alignment explanation
Indices: 60424135--60424398 Score: 311
Period size: 48 Copynumber: 5.5 Consensus size: 48
60424125 GTGCCTGTAA
* *
60424135 AAGACCATGTCTAGGACATGGCATCGACATTGATATGTGTGCCCGTGT
1 AAGACCATGTCTAGGACATGGCATCGACGTTGATATGTGTGCCAGTGT
* * *
60424183 AAGACCCTGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGTGT
1 AAGACCATGTCTAGGACATGGCATCGACGTTGATATGTGTGCCAGTGT
* * *
60424231 AAGACCATGTCTAGTACATGGCATCGGCGTCGATATGTGTGCCAGTGT
1 AAGACCATGTCTAGGACATGGCATCGACGTTGATATGTGTGCCAGTGT
* * * *
60424279 AAGACTATGTCTGGGACATGGCATC-AGTGTTGATATGTGTGCCGGTGT
1 AAGACCATGTCTAGGACATGGCATCGA-CGTTGATATGTGTGCCAGTGT
* * * * *
60424327 AAGACCATGTTTGGGACATGGCATCGGCGATGATATGTG-GATTCA-TGT
1 AAGACCATGTCTAGGACATGGCATCGACGTTGATATGTGTG--CCAGTGT
60424375 AAGACCATGTC-AGGGACATGGCAT
1 AAGACCATGTCTA-GGACATGGCAT
60424399 TGGTACTTTA
Statistics
Matches: 184, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 182 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (48 bp):
AAGACCATGTCTAGGACATGGCATCGACGTTGATATGTGTGCCAGTGT
Found at i:60424384 original size:144 final size:144
Alignment explanation
Indices: 60424135--60424398 Score: 365
Period size: 144 Copynumber: 1.8 Consensus size: 144
60424125 GTGCCTGTAA
*
60424135 AAGACCATGTCTAGGACATGGCATCGACATTGATATGTGTGCCCGTGTAAGACCCTGTCTGGGAC
1 AAGACCATGTCTAGGACATGGCATCGACATTGATATGTGTGCCCGTGTAAGACCATGTCTGGGAC
* *
60424200 ATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTA-GTACATGGCATCGGCGTCGA
66 ATGGCATCGACGATGATATGTGTGCTAGTGTAAGACCATGTC-AGGGACATGGCATCGGCGTCGA
60424264 TATGTGTGCCAGTGT
130 TATGTGTGCCAGTGT
* * ** * *
60424279 AAGACTATGTCTGGGACATGGCATC-AGTGTTGATATGTGTGCCGGTGTAAGACCATGTTTGGGA
1 AAGACCATGTCTAGGACATGGCATCGA-CATTGATATGTGTGCCCGTGTAAGACCATGTCTGGGA
* *
60424343 CATGGCATCGGCGATGATATGTG-GATTCA-TGTAAGACCATGTCAGGGACATGGCAT
65 CATGGCATCGACGATGATATGTGTG-CT-AGTGTAAGACCATGTCAGGGACATGGCAT
60424399 TGGTACTTTA
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
143 3 0.03
144 101 0.96
145 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (144 bp):
AAGACCATGTCTAGGACATGGCATCGACATTGATATGTGTGCCCGTGTAAGACCATGTCTGGGAC
ATGGCATCGACGATGATATGTGTGCTAGTGTAAGACCATGTCAGGGACATGGCATCGGCGTCGAT
ATGTGTGCCAGTGT
Found at i:60426893 original size:45 final size:45
Alignment explanation
Indices: 60426812--60426934 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
60426802 AATATTCTTG
* * * * * *
60426812 TATTCTCGAGTCCGAAACATATACAAGATCTCGGAACCTAATCCTA
1 TATTCTCGAGTCTGCAACATATGCAGGAGCTTGGAACCT-ATCCTA
* * *
60426858 TA-TCTCGAGTCTGCAACATATGTAGGAGCTTGGAACCTATTCTG
1 TATTCTCGAGTCTGCAACATATGCAGGAGCTTGGAACCTATCCTA
*
60426902 TATTCTCGAGTTTGCAACATATGCAGGAGCTTG
1 TATTCTCGAGTCTGCAACATATGCAGGAGCTTG
60426935 AGACCTAGGC
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 6 0.09
45 57 0.88
46 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (45 bp):
TATTCTCGAGTCTGCAACATATGCAGGAGCTTGGAACCTATCCTA
Found at i:60432289 original size:46 final size:46
Alignment explanation
Indices: 60432175--60432278 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 46
60432165 AATATTCATG
* * *
60432175 TATTCTCAAGTTCACAACATATACAAGAACTCGGAACCTAATCCCA
1 TATTCTCGAGTCCACAACATATGCAAGAACTCGGAACCTAATCCCA
* * *
60432221 TATTCTTGAGTCCACAACATATGCAAGAGCTTGGAACCTAATCCTC-
1 TATTCTCGAGTCCACAACATATGCAAGAACTCGGAACCTAATCC-CA
60432267 TATTCTCGAGTC
1 TATTCTCGAGTC
60432279 TGCAGCATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 49 0.98
47 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (46 bp):
TATTCTCGAGTCCACAACATATGCAAGAACTCGGAACCTAATCCCA
Found at i:60432497 original size:23 final size:23
Alignment explanation
Indices: 60432471--60432518 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
60432461 ATATACAAAC
60432471 ATAAACGAATAGATTCATAATGT
1 ATAAACGAATAGATTCATAATGT
60432494 ATAAACGAATAGATTCATAATGT
1 ATAAACGAATAGATTCATAATGT
60432517 AT
1 AT
60432519 GAACTTACCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.31
Consensus pattern (23 bp):
ATAAACGAATAGATTCATAATGT
Found at i:60434359 original size:27 final size:27
Alignment explanation
Indices: 60434302--60434406 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
60434292 TACCTTACAA
* *
60434302 GGGTATTTCGATAATTTTATGC-TAT-AA
1 GGGTATTTCGATAATTTTA--CAAATCAG
60434329 GGGTATTTCGATAATTTTACAAATCAG
1 GGGTATTTCGATAATTTTACAAATCAG
*
60434356 GGGTATTTCGGTAATTTTACAAA-CTAG
1 GGGTATTTCGATAATTTTACAAATC-AG
* *
60434383 GGATATTTCGGTAATTTTACAAAT
1 GGGTATTTCGATAATTTTACAAAT
60434407 TGGGGTCTTA
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 66 0.94
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCAG
Found at i:60437100 original size:25 final size:21
Alignment explanation
Indices: 60437054--60437095 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
60437044 GAAGATGACA
60437054 ACTAAAACTTTGTTTTTCTTT
1 ACTAAAACTTTGTTTTTCTTT
60437075 ACTAAAACTTTGTTTTTCTTT
1 ACTAAAACTTTGTTTTTCTTT
60437096 CTTTATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.05, T:0.57
Consensus pattern (21 bp):
ACTAAAACTTTGTTTTTCTTT
Found at i:60439737 original size:22 final size:22
Alignment explanation
Indices: 60439712--60439759 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
60439702 ACTTTTACTT
60439712 TTTTTTATGTTAGCCACTTTAA
1 TTTTTTATGTTAGCCACTTTAA
60439734 TTTTTTATGTTAGCCACTTTAA
1 TTTTTTATGTTAGCCACTTTAA
60439756 TTTT
1 TTTT
60439760 CTATAATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.21, C:0.12, G:0.08, T:0.58
Consensus pattern (22 bp):
TTTTTTATGTTAGCCACTTTAA
Found at i:60444215 original size:28 final size:26
Alignment explanation
Indices: 60444145--60444215 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
60444135 AGGGTGTAGA
* *
60444145 AGGCTTCGTGCCGGTGTATATATATC
1 AGGCTTAGTGCCGGTGTATATATAGC
* * *
60444171 AGGCTTTGTGCCAGTGTATATCTAGC
1 AGGCTTAGTGCCGGTGTATATATAGC
*
60444197 AGTCATTAGTTGCCGGTGT
1 AGGC-TTAG-TGCCGGTGT
60444216 TTTCAATAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 25 0.69
27 3 0.08
28 8 0.22
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.35
Consensus pattern (26 bp):
AGGCTTAGTGCCGGTGTATATATAGC
Found at i:60450519 original size:50 final size:49
Alignment explanation
Indices: 60450442--60450578 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 49
60450432 CACATAGTAA
* * * *
60450442 GATGCCAATGTCGTATCCCAGATATGGTCTTACATGGATTCACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGA-TCACACATATC
*
60450492 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGAGATCACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GATCACACATATC
60450542 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
60450579 GATCTCATAC
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
49 1 0.01
50 77 0.96
51 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (49 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATCACACATATC
Found at i:60458264 original size:19 final size:20
Alignment explanation
Indices: 60458232--60458306 Score: 80
Period size: 20 Copynumber: 3.5 Consensus size: 20
60458222 GGAAATCAGC
*
60458232 AAAGGGAATGGGAAAATAAG
1 AAAGGAAATGGGAAAATAAG
60458252 AAAGGAAATGGAAGAGAGAA-AAG
1 AAAGGAAATGG--GA-A-AATAAG
*
60458275 CAAGTGAAATGGGAAAATAAG
1 AAAG-GAAATGGGAAAATAAG
60458296 AAAGGAAATGG
1 AAAGGAAATGG
60458307 AAGAGAGAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
20 19 0.41
21 7 0.15
22 4 0.09
23 7 0.15
24 9 0.20
ACGTcount: A:0.56, C:0.01, G:0.33, T:0.09
Consensus pattern (20 bp):
AAAGGAAATGGGAAAATAAG
Found at i:60458264 original size:25 final size:25
Alignment explanation
Indices: 60458236--60458308 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
60458226 ATCAGCAAAG
60458236 GGAATGGGAAAATAAGAAAGGAAAT
1 GGAATGGGAAAATAAGAAAGGAAAT
* * *
60458261 GGAA-GAGAGAA-AAGCAA-G---T
1 GGAATGGGAAAATAAGAAAGGAAAT
*
60458280 GAAATGGGAAAATAAGAAAGGAAAT
1 GGAATGGGAAAATAAGAAAGGAAAT
60458305 GGAA
1 GGAA
60458309 GAGAGAAAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 4 0.12
20 5 0.15
21 5 0.15
22 2 0.06
23 5 0.15
24 5 0.15
25 8 0.24
ACGTcount: A:0.56, C:0.01, G:0.33, T:0.10
Consensus pattern (25 bp):
GGAATGGGAAAATAAGAAAGGAAAT
Found at i:60458286 original size:44 final size:44
Alignment explanation
Indices: 60458238--60458327 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
60458228 CAGCAAAGGG
60458238 AATGGGAAAATAAGAAAGGAAATGGAAGAGAGAAAAGCAAGTGA
1 AATGGGAAAATAAGAAAGGAAATGGAAGAGAGAAAAGCAAGTGA
60458282 AATGGGAAAATAAGAAAGGAAATGGAAGAGAGAAAAGCAAGTGA
1 AATGGGAAAATAAGAAAGGAAATGGAAGAGAGAAAAGCAAGTGA
60458326 AA
1 AA
60458328 GAGAGAGATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.58, C:0.02, G:0.31, T:0.09
Consensus pattern (44 bp):
AATGGGAAAATAAGAAAGGAAATGGAAGAGAGAAAAGCAAGTGA
Found at i:60458986 original size:27 final size:28
Alignment explanation
Indices: 60458927--60458980 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
60458917 AAAATAATTA
*
60458927 AAATTAAATATGTTAATAATTAAAGTGC
1 AAATTAAATATGTTAATAAGTAAAGTGC
* *
60458955 AAATTAATTAT-TTTATAAGTAAAGTG
1 AAATTAAATATGTTAATAAGTAAAGTG
60458981 TGAATTTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (28 bp):
AAATTAAATATGTTAATAAGTAAAGTGC
Found at i:60459156 original size:24 final size:23
Alignment explanation
Indices: 60459129--60459174 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60459119 AATTTAAATA
60459129 ATTTAACATTAAACAAAAATAATT
1 ATTTAA-ATTAAACAAAAATAATT
* *
60459153 ATTTGAATTAAATAAAAATAAT
1 ATTTAAATTAAACAAAAATAAT
60459175 CAAATACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (23 bp):
ATTTAAATTAAACAAAAATAATT
Found at i:60460847 original size:21 final size:22
Alignment explanation
Indices: 60460801--60460848 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
60460791 CCATTTCCAG
*
60460801 AATAACATCAAATTTGTCAAAGGA
1 AATAACATCAAATTAGT--AAGGA
60460825 AATAACATCAAATTAGT-AGGA
1 AATAACATCAAATTAGTAAGGA
60460846 AAT
1 AAT
60460849 TCATAACCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
24 16 0.70
ACGTcount: A:0.52, C:0.10, G:0.12, T:0.25
Consensus pattern (22 bp):
AATAACATCAAATTAGTAAGGA
Found at i:60465681 original size:6 final size:6
Alignment explanation
Indices: 60465663--60465782 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
60465653 AAGAAACATT
* *
60465663 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
60465712 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
60465763 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
60465783 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.72
7 15 0.17
8 3 0.03
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:60465715 original size:31 final size:31
Alignment explanation
Indices: 60465672--60465782 Score: 204
Period size: 31 Copynumber: 3.5 Consensus size: 31
60465662 TATCAGAACT
*
60465672 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
60465703 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
60465734 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
60465765 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
60465783 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
31 67 0.86
32 11 0.14
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:60465960 original size:27 final size:26
Alignment explanation
Indices: 60465918--60466019 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
60465908 GCTCAGTTAT
* * *
60465918 CAGATATTATGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
60465945 CAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
60465971 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
60465999 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
60466020 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.77
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:60466045 original size:54 final size:54
Alignment explanation
Indices: 60465936--60466037 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
60465926 ATGACAGAGT
* * * ** *
60465936 CACCAGATACAGATATTGTGGCAGAGCCACTAGAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATAATGTGGCAAAGCCACTAGAACAGATATACGTGGCAAAGC
*
60465990 CACCAGAAACAGATAATGTGGCAAAGCCACT-TAACAGA-ATACGTGGCA
1 CACCAGAAACAGATAATGTGGCAAAGCCACTAGAACAGATATACGTGGCA
60466038 CAAAGCCATT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
52 8 0.19
53 6 0.14
54 28 0.67
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CACCAGAAACAGATAATGTGGCAAAGCCACTAGAACAGATATACGTGGCAAAGC
Found at i:60466726 original size:27 final size:27
Alignment explanation
Indices: 60466686--60466881 Score: 295
Period size: 27 Copynumber: 7.3 Consensus size: 27
60466676 TACCCTATAA
* *
60466686 GGTATCTCGATAATTCCACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
60466713 GGTATTT-TAGTAATTCTACCCTACAGG
1 GGTATTTCGA-TAATTCTACCCTACAGG
60466740 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
60466767 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
60466794 GGTATTTCGGTAATTCTATCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
60466821 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * *
60466848 GGTATTCCGATAATTCTAACCTACAAG
1 GGTATTTCGATAATTCTACCCTACAGG
60466875 GGTATTT
1 GGTATTT
60466882 TGGTAATTTC
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:60466807 original size:81 final size:81
Alignment explanation
Indices: 60466693--60466889 Score: 331
Period size: 81 Copynumber: 2.4 Consensus size: 81
60466683 TAAGGTATCT
* *
60466693 CGATAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
1 CGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
*
60466758 CCCTACAGGGGTATTG
66 CCCTACAGGGGTATTC
* *
60466774 CGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCGATAATTCTA
1 CGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
60466839 CCCTACAGGGGTATTC
66 CCCTACAGGGGTATTC
* *
60466855 CGATAATTCTAACCTACAAGGGTATTTTGGTAATT
1 CGATAATTCTACCCTACAGGGGTATTTTGGTAATT
60466890 TCAAAAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 108 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (81 bp):
CGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
CCCTACAGGGGTATTC
Found at i:60466888 original size:27 final size:27
Alignment explanation
Indices: 60466668--60466889 Score: 275
Period size: 27 Copynumber: 8.3 Consensus size: 27
60466658 TGGGCAAAAT
* * * *
60466668 GGTAATTTTACCCTATA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
60466694 GATAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60466721 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60466748 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60466775 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60466802 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60466829 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
60466856 GATAATTCTAACCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
60466883 GGTAATT
1 GGTAATT
60466890 TCAAAAATTA
Statistics
Matches: 170, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
26 13 0.08
27 157 0.92
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:60466999 original size:27 final size:26
Alignment explanation
Indices: 60466870--60467067 Score: 126
Period size: 27 Copynumber: 7.3 Consensus size: 26
60466860 ATTCTAACCT
***
60466870 ACAAGGGTATTTTGGTAATTTCAAAA
1 ACAAGGGTATTTTGGTAATTTTGTAA
* * **
60466896 ATTAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTGTAA
* *
60466923 ACCAAGGGTATTTTGGTAATTTTATTGA
1 A-CAAGGGTATTTTGGTAATTTT-GTAA
* *
60466951 TCGAGGGTATTTTGGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTGTAA
*
60466977 ACAAAGGGTATTTTAGTAATTTTGTAA
1 AC-AAGGGTATTTTGGTAATTTTGTAA
** ** *
60467004 ATTGAGGGTAAATTGGTAATTCTGTAA
1 A-CAAGGGTATTTTGGTAATTTTGTAA
* **** *
60467031 ATCGAGGGTAAGACGGTAATTCTGTAA
1 A-CAAGGGTATTTTGGTAATTTTGTAA
60467058 ATCAAGGGTA
1 A-CAAGGGTA
60467068 AAATGGTAAT
Statistics
Matches: 140, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.03
27 135 0.96
28 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTGTAA
Found at i:60467011 original size:54 final size:54
Alignment explanation
Indices: 60466872--60467031 Score: 187
Period size: 54 Copynumber: 3.0 Consensus size: 54
60466862 TCTAACCTAC
* * ** *
60466872 AAGGGTATTTTGGTAATTTCAAAAATT-AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAATTGA-GGGTATTTTGGTAATTTTGTAAACA
** *
60466926 AAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACA
1 AAGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTGTAAACA
* * ** *
60466980 AAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAATTGGTAATTCTGTAAA
1 AAGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTGTAAA
60467032 TCGAGGGTAA
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 88 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.41
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTGTAAACA
Found at i:60467012 original size:81 final size:81
Alignment explanation
Indices: 60466873--60467024 Score: 178
Period size: 81 Copynumber: 1.9 Consensus size: 81
60466863 CTAACCTACA
** * * **
60466873 AGGGTATTTTGGTAATTTCAAAAATTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
1 AGGGTATTTTGGTAATTTCAAAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTAAATTG
60466938 GTAATTTTATTGATCG
66 GTAATTTTATTGATCG
*** ** ***
60466954 AGGGTATTTTGGTAATTTTGTAAACAAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAATTG
1 AGGGTATTTTGGTAATTTCAAAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTAAATTG
60467019 GTAATT
66 GTAATT
60467025 CTGTAAATCG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 57 1.00
ACGTcount: A:0.31, C:0.04, G:0.23, T:0.42
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTCAAAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTAAATTG
GTAATTTTATTGATCG
Found at i:60467035 original size:81 final size:81
Alignment explanation
Indices: 60466950--60467134 Score: 194
Period size: 81 Copynumber: 2.3 Consensus size: 81
60466940 AATTTTATTG
* *** * * *
60466950 ATCGAGGGTATTTTGGTAATTTTGTAAA-CAAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTA
1 ATCGAGGGTAATTTGGTAATTTTGTAAATC-AAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
* * *
60467014 AATTGGTAATTCTGTAA
65 AAATAGTAATTCTATAA
*** * *
60467031 ATCGAGGGTAAGACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
60467096 AATAGTAATTCTATAA
66 AATAGTAATTCTATAA
*
60467112 ATC-AGGGGTACTTTGGTAATTTT
1 ATCGA-GGGTAATTTGGTAATTTT
60467135 ACAAGTCGAG
Statistics
Matches: 82, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
80 1 0.01
81 80 0.98
82 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
AATAGTAATTCTATAA
Found at i:60467039 original size:54 final size:54
Alignment explanation
Indices: 60466927--60467094 Score: 167
Period size: 54 Copynumber: 3.1 Consensus size: 54
60466917 TTACAAACCA
* ** ** * *
60466927 AGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAA-CAA
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAATTGGTAATTCTGTAAATC-G
* *
60466981 AGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAATTGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAATTGGTAATTCTGTAAATCG
**** * * * *
60467035 AGGGTAAGACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAATTGGTAATTCTGTAAATCG
60467089 AGGGTA
1 AGGGTA
60467095 AAATAGTAAT
Statistics
Matches: 94, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
54 93 0.99
55 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAATTGGTAATTCTGTAAATCG
Found at i:60467068 original size:27 final size:27
Alignment explanation
Indices: 60466992--60467118 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
60466982 GGGTATTTTA
* * *
60466992 GTAATTTTGTAAATTGAGGGTAAATTG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
60467019 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
60467046 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
60467073 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
60467100 GTAATTCTATAAATC-AGGG
1 GTAATTCTGTAAATCGAGGG
60467119 GTACTTTGGT
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 4 0.04
27 85 0.96
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:60467095 original size:54 final size:54
Alignment explanation
Indices: 60466991--60467148 Score: 181
Period size: 54 Copynumber: 2.9 Consensus size: 54
60466981 AGGGTATTTT
* ** * *
60466991 AGTAATTTTGTAAATTGAGGGTAAATTGGTAATTCTGTAAATCGAGGGTAAGAC
1 AGTAATTCTGTAAATCAAGGGTAAATTGGTAATTCTATAAATCGAGGGTAAAAC
* * *
60467045 GGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAATTGGTAATTCTATAAATCGAGGGTAAAAC
* * ** * * *
60467099 AGTAATTCTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 AGTAATTCTGTAAATCAAGGGTAAATTGGTAATTCTATAAATCGAGGGTA
60467149 TTTCAATAAT
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (54 bp):
AGTAATTCTGTAAATCAAGGGTAAATTGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:60467130 original size:27 final size:27
Alignment explanation
Indices: 60466874--60467132 Score: 125
Period size: 27 Copynumber: 9.6 Consensus size: 27
60466864 TAACCTACAA
* *
60466874 GGGTATTTTGGTAATT-TCAAAAATTAG
1 GGGTATTTTGGTAATTCT-ATAAATCAG
* * * *
60466901 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTCTATAAATCAG
* **
60466928 GGGTATTTTGGTAATTTTATTGATC-G
1 GGGTATTTTGGTAATTCTATAAATCAG
* * *
60466954 AGGGTATTTTGGTAATTTTGTAAA-CAAA
1 -GGGTATTTTGGTAATTCTATAAATC-AG
* * * *
60466982 GGGTATTTTAGTAATTTTGTAAAT-TG
1 GGGTATTTTGGTAATTCTATAAATCAG
** *
60467008 AGGGTAAATTGGTAATTCTGTAAATC-G
1 -GGGTATTTTGGTAATTCTATAAATCAG
**** * *
60467035 AGGGTAAGACGGTAATTCTGTAAATCAA
1 -GGGTATTTTGGTAATTCTATAAATCAG
***
60467063 GGGTAAAATGGTAATTCTATAAATC-G
1 GGGTATTTTGGTAATTCTATAAATCAG
*** *
60467089 AGGGTAAAATAGTAATTCTATAAATCAG
1 -GGGTATTTTGGTAATTCTATAAATCAG
*
60467117 GGGTACTTTGGTAATT
1 GGGTATTTTGGTAATT
60467133 TTACAAGTCG
Statistics
Matches: 189, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.01
27 186 0.98
28 2 0.01
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (27 bp):
GGGTATTTTGGTAATTCTATAAATCAG
Found at i:60467147 original size:27 final size:27
Alignment explanation
Indices: 60467127--60467219 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
60467117 GGGTACTTTG
60467127 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* *
60467154 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* * * **
60467181 GTAATTTCACAAAT-TAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTCA
60467208 GTAATTTTACAA
1 GTAATTTTACAA
60467220 ACTAGGGGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTCA
Found at i:60467220 original size:27 final size:27
Alignment explanation
Indices: 60467115--60467241 Score: 105
Period size: 27 Copynumber: 4.7 Consensus size: 27
60467105 TCTATAAATC
*
60467115 AGGGGTACTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTGGTAATTTTACAAAGT
* *** *
60467141 CGAGGGTATTTCAATAATTTTAC-AGGT
1 AG-GGGTATTTTGGTAATTTTACAAAGT
* ** * *
60467168 CGAGGGTATTTCAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAAGT
*
60467196 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAAGT
*
60467223 AGGGGTATTCTGGTAATTT
1 AGGGGTATTTTGGTAATTT
60467242 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 79 0.95
28 3 0.04
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAAGT
Found at i:60471337 original size:53 final size:53
Alignment explanation
Indices: 60471155--60471361 Score: 164
Period size: 53 Copynumber: 3.8 Consensus size: 53
60471145 ATTAGGGTTT
* * * * * *
60471155 AAGGATACCA-AGTAAGACCATGCCAAGGCATGACATTGGTGAGTTTTACAAGGC
1 AAGGATACCATA-TAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * *
60471209 AAGAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
60471264 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
60471317 AAGGATACCACATAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTT
60471362 TAAAAAGGAA
Statistics
Matches: 117, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
53 44 0.38
54 35 0.30
55 38 0.32
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:60472582 original size:17 final size:16
Alignment explanation
Indices: 60472550--60472580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60472540 TGAATGCGAG
*
60472550 AAAATTAAATTTTTTA
1 AAAAGTAAATTTTTTA
60472566 AAAAGTAAATTTTTT
1 AAAAGTAAATTTTTT
60472581 TATGCCCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
AAAAGTAAATTTTTTA
Found at i:60478584 original size:26 final size:27
Alignment explanation
Indices: 60478513--60478584 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
60478503 CATACATATT
* *
60478513 ATAGGGGTATATTAGTCATTTTACTTC
1 ATAGGGGTATAATAGTCATTTTACCTC
*
60478540 ATAGGGGTATAACAGTCATTTTACCTC
1 ATAGGGGTATAATAGTCATTTTACCTC
*
60478567 A-AGGGGTATAATAATCAT
1 ATAGGGGTATAATAGTCAT
60478585 CTCATCAAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 15 0.38
27 25 0.62
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (27 bp):
ATAGGGGTATAATAGTCATTTTACCTC
Found at i:60486389 original size:27 final size:27
Alignment explanation
Indices: 60486345--60486421 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
60486335 GTCATACATA
* * *
60486345 TCATAAGGGTATATCAGTCATTTTACT
1 TCATAGGGGTATAACAGTCATTTTACC
* *
60486372 TTATAGTGGTATAACAGTCATTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
*
60486399 TCATAGGGGTATAATAGTCATTT
1 TCATAGGGGTATAACAGTCATTT
60486422 CATGGGGTCC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCATTTTACC
Found at i:60493767 original size:25 final size:25
Alignment explanation
Indices: 60493725--60493792 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
60493715 ATGCTACCTC
* **
60493725 AAGGCCTTTGCCTTAGTTTACC-GAA
1 AAGGGCTTTGCCCCAGTTTACCAG-A
*
60493750 AAGGGCTTTGCCCCAGTTTATCAGA
1 AAGGGCTTTGCCCCAGTTTACCAGA
60493775 AAGGGCTTTGCCCCAGTT
1 AAGGGCTTTGCCCCAGTT
60493793 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (25 bp):
AAGGGCTTTGCCCCAGTTTACCAGA
Found at i:60493805 original size:24 final size:23
Alignment explanation
Indices: 60493748--60493819 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
60493738 TAGTTTACCG
60493748 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAG-TTATC
*
60493772 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
60493796 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
60493820 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.31
25 25 0.60
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:60493998 original size:42 final size:42
Alignment explanation
Indices: 60493939--60494030 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
60493929 GTATCTCCCC
*
60493939 AAATGGGCTTGCATACATTCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60493981 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60494023 AAATGGGC
1 AAATGGGC
60494031 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:60496438 original size:27 final size:27
Alignment explanation
Indices: 60496408--60496499 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
60496398 ATTACCAAAG
* * *
60496408 TACCCTCGATTTAGAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
60496435 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
60496462 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
60496489 TACCCTCGATT
1 TACCCTCGATT
60496500 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:60496453 original size:54 final size:54
Alignment explanation
Indices: 60496395--60496499 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
60496385 CTCAACTTGT
* * * *
60496395 AAAATTACCAAAGTACCCTCGATTTAGAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTAC
***
60496449 AAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
60496500 GTGAAATTAC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTAC
Found at i:60496607 original size:27 final size:26
Alignment explanation
Indices: 60496531--60496616 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
60496521 TGTAGGATAG
* * *
60496531 AATTGCCAAAATACCACTGGTTTGAGA
1 AATTACCAAAATACCCCTGATTTGA-A
*
60496558 AATTACCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTG-AA
*
60496585 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTT-GAA
60496612 AATTA
1 AATTA
60496617 TAGAAATACC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
26 3 0.06
27 41 0.84
28 5 0.10
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (26 bp):
AATTACCAAAATACCCCTGATTTGAA
Found at i:60496623 original size:27 final size:27
Alignment explanation
Indices: 60496593--60496687 Score: 93
Period size: 27 Copynumber: 3.4 Consensus size: 27
60496583 AAAATTACCA
*
60496593 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
*
60496620 AAATACCGTTGACTTTTTTA-AAAATTATAG
1 AAATACCCTTGA----TTTACAAAATTATAG
* * * *
60496650 GAATACCATTGGTTTACAAAATTATTG
1 AAATACCCTTGATTTACAAAATTATAG
60496677 AAATACCCTTG
1 AAATACCCTTG
60496688 GTTTGTAGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
26 4 0.07
27 28 0.51
30 19 0.35
31 4 0.07
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:60496775 original size:27 final size:26
Alignment explanation
Indices: 60496732--60496805 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
60496722 AAATGACTAA
*
60496732 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAA-ACCGT
60496759 AA-AGCCCCTGTAGGGTAAAGAAACCGT
1 AATA-CCCCTGTAGGGTAAA-AAACCGT
* *
60496786 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
60496806 TGACGAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
26 4 0.10
27 33 0.82
28 3 0.08
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (26 bp):
AATACCCCTGTAGGGTAAAAAACCGT
Found at i:60497860 original size:42 final size:42
Alignment explanation
Indices: 60497813--60497904 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
60497803 TAGTCTCCCC
60497813 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
60497855 AAATGGGCTTGCATACATTTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60497897 AAATGGGC
1 AAATGGGC
60497905 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:60498003 original size:29 final size:30
Alignment explanation
Indices: 60497928--60498009 Score: 98
Period size: 29 Copynumber: 2.7 Consensus size: 30
60497918 CGTTTACAGT
*
60497928 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTAATGA
*
60497959 AAAGGCTTCGGTCCAGTA-ACTG-TTAAATG-
1 AAAGGCTTCGGCCCAGTATA-TGATT-AATGA
60497988 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
60498010 TCAAGAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 22 0.49
30 7 0.16
31 16 0.36
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTAATGA
Found at i:60501242 original size:46 final size:45
Alignment explanation
Indices: 60501184--60501412 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 45
60501174 AGTGTGCTCT
60501184 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATAG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
60501230 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATA-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
60501276 GTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATA-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
60501322 GTGATGGGGAAATGAATAAGACCATGGTTGAATGATACCACGGCAAC
1 CTGAT--AGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
60501369 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATAG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
60501413 TCATGTCGAA
Statistics
Matches: 162, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.01
46 122 0.75
47 39 0.24
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (45 bp):
CTGATAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:60501374 original size:93 final size:92
Alignment explanation
Indices: 60501189--60501412 Score: 315
Period size: 93 Copynumber: 2.4 Consensus size: 92
60501179 GCTCTCTGAT
* **
60501189 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCAT
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAGGAAATGAATAAGACCAT
* *
60501254 GGTTGAAAGATACCATGGCAACGTGAC
66 GGTTGAAAGATACCACGGCAACATGAC
* *
60501281 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATGGGGAAATGAATAAGACC
1 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT-AGGAAATGAATAAGACC
*
60501345 ATGGTTGAATGATACCACGGCAACATGAC
64 ATGGTTGAAAGATACCACGGCAACATGAC
* * * *
60501374 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
60501413 TCATGTCGAA
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
92 44 0.38
93 73 0.62
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (92 bp):
AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAGGAAATGAATAAGACCAT
GGTTGAAAGATACCACGGCAACATGAC
Found at i:60506394 original size:46 final size:46
Alignment explanation
Indices: 60506342--60506562 Score: 282
Period size: 46 Copynumber: 4.8 Consensus size: 46
60506332 CTCGGATAGA
* *
60506342 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
*
60506388 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
***
60506434 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGA-CATG
** * * *
60506481 AAATGAATAAGACCATGGTTGAATGATACCACGGCAACATGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
* * * *
60506526 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
60506563 TCATGTCGAA
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 114 0.75
47 38 0.25
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
Found at i:60506524 original size:93 final size:92
Alignment explanation
Indices: 60506339--60506562 Score: 306
Period size: 93 Copynumber: 2.4 Consensus size: 92
60506329 GCTCTCGGAT
* **
60506339 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCAT
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAGGAAATGAATAAGACCAT
* **
60506404 GGTTGAAAGATACCATGGCAATGTGAC
66 GGTTGAAAGATACCACGGCAACATGAC
* *
60506431 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATGGGGAAATGAATAAGACC
1 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT-AGGAAATGAATAAGACC
*
60506495 ATGGTTGAATGATACCACGGCAACATGAC
64 ATGGTTGAAAGATACCACGGCAACATGAC
* * * *
60506524 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
60506563 TCATGTCGAA
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
92 44 0.38
93 72 0.62
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (92 bp):
AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAGGAAATGAATAAGACCAT
GGTTGAAAGATACCACGGCAACATGAC
Found at i:60510561 original size:5 final size:5
Alignment explanation
Indices: 60510551--60510576 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
60510541 TACTAATTAT
60510551 TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA T
60510577 TGCATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:60512855 original size:40 final size:40
Alignment explanation
Indices: 60512811--60512891 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
60512801 ATTATTAGCT
*
60512811 TGATTACAAGTAGAGACTATAATTTAATTTTATATTTTTA
1 TGATTACAAGTAGAAACTATAATTTAATTTTATATTTTTA
*
60512851 TGATTACAGGTAGAAACTATAATTTAATTTTATATTTTTA
1 TGATTACAAGTAGAAACTATAATTTAATTTTATATTTTTA
60512891 T
1 T
60512892 TTTCAATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.48
Consensus pattern (40 bp):
TGATTACAAGTAGAAACTATAATTTAATTTTATATTTTTA
Found at i:60515997 original size:21 final size:23
Alignment explanation
Indices: 60515957--60516006 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
60515947 CAAGAGAAAT
60515957 TAATAAAGTAAATAAAAATACGTA
1 TAATAAAGTAAATAAAAATA-GTA
*
60515981 -AATAAA-T-AATAACAATAGTA
1 TAATAAAGTAAATAAAAATAGTA
60516001 TAATAA
1 TAATAA
60516007 TATTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 3 0.12
21 14 0.58
22 1 0.04
23 6 0.25
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (23 bp):
TAATAAAGTAAATAAAAATAGTA
Found at i:60519296 original size:30 final size:30
Alignment explanation
Indices: 60519260--60519323 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
60519250 CTAGCCTTTG
*
60519260 CCACCACCAACTCCACTAGCCCCACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
60519290 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
60519320 CCAC
1 CCAC
60519324 TTGCTCCACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.53, G:0.06, T:0.16
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:60519780 original size:29 final size:29
Alignment explanation
Indices: 60519745--60519812 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
60519735 TGGCACCGAT
*
60519745 GGTGGCCGGCAGCGGT-TCAGTGACCGGAC
1 GGTGGCCGGCAGCAGTCT-AGTGACCGGAC
* *
60519774 GGTGGCCGGCGGCAGTCTGGTGACCGGAC
1 GGTGGCCGGCAGCAGTCTAGTGACCGGAC
60519803 GGTGGCCGGC
1 GGTGGCCGGC
60519813 CTTGTGGCCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
29 34 0.97
30 1 0.03
ACGTcount: A:0.10, C:0.28, G:0.49, T:0.13
Consensus pattern (29 bp):
GGTGGCCGGCAGCAGTCTAGTGACCGGAC
Found at i:60519890 original size:25 final size:25
Alignment explanation
Indices: 60519862--60519992 Score: 85
Period size: 23 Copynumber: 5.4 Consensus size: 25
60519852 TTGTTATTAT
*
60519862 TATATTTTTAATATTATATTATATA
1 TATATTTTTAATACTATATTATATA
* **
60519887 TATATTCTTT--TAATATA-T-TAGG
1 TATATT-TTTAATACTATATTATATA
* * * *
60519909 TATATTCTAAATTCTATATTACATA
1 TATATTTTTAATACTATATTATATA
* * *
60519934 TATA-TATT-ATACTATTTTATGTA
1 TATATTTTTAATACTATATTATATA
*
60519957 TATATCTTTAATACTATATTATTTATA
1 TATATTTTTAATACTATATTA--TATA
60519984 TATATTTTT
1 TATATTTTT
60519993 TTCTACATGT
Statistics
Matches: 76, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
21 1 0.01
22 8 0.11
23 21 0.28
24 11 0.14
25 21 0.28
26 3 0.04
27 11 0.14
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.56
Consensus pattern (25 bp):
TATATTTTTAATACTATATTATATA
Found at i:60520027 original size:22 final size:22
Alignment explanation
Indices: 60520002--60520068 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 22
60519992 TTTCTACATG
*
60520002 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
60520024 TTATATTATGTATTTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
60520049 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
60520069 TTTTATATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:60520032 original size:27 final size:27
Alignment explanation
Indices: 60519949--60520032 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 27
60519939 ATTATACTAT
60519949 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATA-TATATTA
* * ** * *
60519978 TTTATATATATTTTTTTCTACATGTTA
1 TTTATGTATATATTTTAATATATATTA
60520005 TCTTATGTATATATTTTAAT-TATATTA
1 T-TTATGTATATATTTTAATATATATTA
60520032 T
1 T
60520033 GTATTTATTT
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
27 12 0.29
28 19 0.45
29 11 0.26
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (27 bp):
TTTATGTATATATTTTAATATATATTA
Found at i:60520108 original size:79 final size:78
Alignment explanation
Indices: 60519934--60520108 Score: 185
Period size: 79 Copynumber: 2.2 Consensus size: 78
60519924 ATATTACATA
* * * * *
60519934 TATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATATTTTTTTCTAC
1 TATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTTTATAC
*
60519999 ATGTTATCTTATG
66 ATGTTATCATATG
* * * * *
60520012 TATATATTTTAATTATATTATGTATTTATTTTTTACACTATATTATGTACATAT-TTTTTTTATA
1 TATATATTAT-ACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTTTATA
60520076 TCTAT-TTCATACATATG
65 -C-ATGTT-AT-CATATG
60520093 TATATATTATA-TATAT
1 TATATATTATACTATAT
60520109 CTTAACATTA
Statistics
Matches: 80, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
78 18 0.22
79 43 0.54
80 5 0.06
81 14 0.17
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (78 bp):
TATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTTTATAC
ATGTTATCATATG
Found at i:60520160 original size:25 final size:24
Alignment explanation
Indices: 60520132--60520187 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
60520122 GTTATATTTT
*
60520132 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
60520157 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
60520180 CACTATTA
1 CACTATTA
60520188 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:60524166 original size:25 final size:25
Alignment explanation
Indices: 60524132--60524179 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
60524122 GCTCAATTCC
*
60524132 GAAAAAGGACTAAATTGCATAAAGG
1 GAAAAAGGACTAAATCGCATAAAGG
60524157 GAAAAAGGACTAAATCGCATAAA
1 GAAAAAGGACTAAATCGCATAAA
60524180 ATAATCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.10, G:0.21, T:0.15
Consensus pattern (25 bp):
GAAAAAGGACTAAATCGCATAAAGG
Found at i:60525576 original size:130 final size:130
Alignment explanation
Indices: 60525380--60525729 Score: 470
Period size: 130 Copynumber: 2.7 Consensus size: 130
60525370 GAAAAACTGA
* * *
60525380 AACCCAACAC-AGTAGGACATGATTCCTCAAATTTCCTAAACACCGAGCATTGCCTTCGTTTTGG
1 AACCCAACACGA-TAGGGCATGATTCCT-AAATTGCC-AAACACCGAGCATTGCCTTCATTTTGG
60525444 AGAATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAT
63 AGAATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAT
60525509 CAC
128 CAC
* *
60525512 AACCCAGCACGATAGGGCATGATTCCTAAATTGCCAAACACCGAGTATTGCCTTCATTTTGGAGA
1 AACCCAACACGATAGGGCATGATTCCTAAATTGCCAAACACCGAGCATTGCCTTCATTTTGGAGA
* **
60525577 ATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATGTTCGATTGTTTTGAACAAACGAGAAATTGC
66 ATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCAC
* * * * * * * * **
60525642 AACCCAACACGATAGGGCACGATTCCGTGAATTGTCAAATATCAAACATCGCC-TCATTTTAAAG
1 AACCCAACACGATAGGGCATGATTCC-TAAATTGCCAAACACCGAGCATTGCCTTCATTTTGGAG
*
60525706 AATTTTTAAAAGACATGGGTGAAA
65 AATTTTTAAAAG-CATGAGTGAAA
60525730 TTCTAAATGG
Statistics
Matches: 194, Mismatches: 21, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
130 135 0.70
131 35 0.18
132 23 0.12
133 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (130 bp):
AACCCAACACGATAGGGCATGATTCCTAAATTGCCAAACACCGAGCATTGCCTTCATTTTGGAGA
ATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCAC
Found at i:60528675 original size:48 final size:47
Alignment explanation
Indices: 60528600--60528876 Score: 238
Period size: 48 Copynumber: 5.8 Consensus size: 47
60528590 TGATATGTGT
* * *
60528600 GCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCGATGTTGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ATGTCGTGAGA
* ** *
60528648 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATGTCGTGAGA
* ** * *
60528696 GCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCATTGATATGTG-TA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-TG-T-CGTGAGA
* * *
60528745 -CTAGTGTAAGACCATGTCTGGGACATGGCATC-G-ATAATAAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-GT-CG-TGAGA
* * * * * *
60528792 GCTAATGTAAGACTATGTCTGGGACATGGCATCAGCCTCGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-GTCGTGAGA
* *
60528840 GCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
60528877 ATTCACCCTT
Statistics
Matches: 184, Mismatches: 35, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
45 4 0.02
46 2 0.01
47 4 0.02
48 167 0.91
49 4 0.02
50 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATGTCGTGAGA
Found at i:60528764 original size:96 final size:96
Alignment explanation
Indices: 60528600--60528872 Score: 325
Period size: 96 Copynumber: 2.8 Consensus size: 96
60528590 TGATATGTGT
* * * *
60528600 GCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCGA-TGTTGTGAGAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGC-ATTGATATGTGAGCTAGTGTAAGACCAT
* * * *
60528664 GTCTGGGACATGGCATCGGCCACATCATGAGA
65 GTCTGGGACATGGCATCGACAACAACACGAGA
**
60528696 GCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCATTGATATGTGTA-CTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGATATGTG-AGCTAGTGTAAGACCAT
* * *
60528760 GTCTGGGACATGGCATCGATAATAAGACGAGA
65 GTCTGGGACATGGCATCGACAACAACACGAGA
* * * * * *
60528792 GCTAATGTAAGACTATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGATATGTGAGCTAGTGTAAGACCATG
* *
60528857 TTTGGAACATGGCATC
66 TCTGGGACATGGCATC
60528873 AGCAATTCAC
Statistics
Matches: 151, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
95 2 0.01
96 148 0.98
97 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGATATGTGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCGACAACAACACGAGA
Found at i:60528850 original size:144 final size:142
Alignment explanation
Indices: 60528590--60528871 Score: 388
Period size: 144 Copynumber: 2.0 Consensus size: 142
60528580 GACATTTGGG
* * * * * *
60528590 TGATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCGATGTTGTGAGAGCTAGTG
1 TGATATGTGTACTAGTGTAAGACCATGTCTGGAACATGGCAT-A-CGATATAGCGAGAGCTAATG
* *
60528655 TAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGAGCTAGTGTAAGACCATGTTTGGGA
64 TAAGACCATGTCTGGGACATGGCATCAGCCACATCATGAGAGCTAGTGTAAGACCATGTTTGGAA
60528720 CATGGCATTGGCAT
129 CATGGCATTGGCAT
*
60528734 TGATATGTGTACTAGTGTAAGACCATGTCTGGGACATGGCAT-CGATAATAAGACGAGAGCTAAT
1 TGATATGTGTACTAGTGTAAGACCATGTCTGGAACATGGCATACGAT-AT-AG-CGAGAGCTAAT
* * *
60528798 GTAAGACTATGTCTGGGACATGGCATCAGCCTCGA-CATGTGAGCTAGTGTAAGACCATGTTTGG
63 GTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATCATGAGAGCTAGTGTAAGACCATGTTTGG
60528862 AACATGGCAT
127 AACATGGCAT
60528872 CAGCAATTCA
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
141 4 0.03
142 1 0.01
143 1 0.01
144 115 0.94
145 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (142 bp):
TGATATGTGTACTAGTGTAAGACCATGTCTGGAACATGGCATACGATATAGCGAGAGCTAATGTA
AGACCATGTCTGGGACATGGCATCAGCCACATCATGAGAGCTAGTGTAAGACCATGTTTGGAACA
TGGCATTGGCAT
Found at i:60531958 original size:39 final size:39
Alignment explanation
Indices: 60531904--60531988 Score: 170
Period size: 39 Copynumber: 2.2 Consensus size: 39
60531894 ATTTGTGGTA
60531904 AAAGTGTCCAACCCATTAGGCAAACATGTAATAGTTGAC
1 AAAGTGTCCAACCCATTAGGCAAACATGTAATAGTTGAC
60531943 AAAGTGTCCAACCCATTAGGCAAACATGTAATAGTTGAC
1 AAAGTGTCCAACCCATTAGGCAAACATGTAATAGTTGAC
60531982 AAAGTGT
1 AAAGTGT
60531989 GTAGAAACTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (39 bp):
AAAGTGTCCAACCCATTAGGCAAACATGTAATAGTTGAC
Found at i:60533730 original size:27 final size:27
Alignment explanation
Indices: 60533676--60533783 Score: 148
Period size: 27 Copynumber: 4.0 Consensus size: 27
60533666 AGCATGGCTG
* * *
60533676 CCAGAACAGATAA-TGTGACAGGGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60533702 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60533729 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
60533756 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60533783 C
1 C
60533784 TAGGACGCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:60541631 original size:27 final size:27
Alignment explanation
Indices: 60541577--60541689 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
60541567 AGCATGGCTG
* * *
60541577 CCAGAACAGATA-ATGTGACAGGGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
60541603 CCAGAACAGATA-ATTGTGGCAGAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
60541630 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
60541657 CCAGATCAGATATATGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
60541684 GCAGAA
1 CCAGAA
60541690 GAAGAGATGA
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 13 0.17
27 64 0.82
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.26, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:60546122 original size:48 final size:47
Alignment explanation
Indices: 60546050--60546271 Score: 198
Period size: 48 Copynumber: 4.6 Consensus size: 47
60546040 TATGTGTGCC
* *
60546050 AGTGTAAGACCAAGTTTG-GAACATGGCATCAGCAATGTTGTGAGAGCA
1 AGTGTAAGACCATGTTTGAG-ACATGGCATCGGCAATG-TGTGAGAGCA
* * * * * * *
60546098 AGTGTAAGACCATGTCTAAGACATGGCATCGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATG-TGTGAGAGCA
* *
60546146 AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATGAGACGAGAGCTA
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATGTG-TGAGAGC-A
* * ** * *
60546195 A-TGTAAGACCATGTTTGGGACATGGCATCGGC-CTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCAAT-G-TGTGAGAGCA
*
60546242 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGACCATGTTTGAGACATGGCATC
60546272 AATAATTCAC
Statistics
Matches: 142, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
47 2 0.01
48 138 0.97
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATGTGTGAGAGCA
Found at i:60546201 original size:96 final size:95
Alignment explanation
Indices: 60546037--60546272 Score: 296
Period size: 96 Copynumber: 2.5 Consensus size: 95
60546027 GACATTTGGG
* * * *
60546037 TGATATGTGTGCCAGTGTAAGACCAAGTTTGGAACATGGCATCAGCAATGTTGTGAGAGCAAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCAGCAATGTAGCGAGAGCAAGTG
60546102 TAAGACCATGTCTAAGACATGGCATCGGCAT
65 TAAGACCATGTCTAAGACATGGCATCGGCAT
* * *
60546133 TGATATGTGCGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCAATG-AGACGAGAGCTAA-
1 TGATATGTGAGCCAGTGTAAGACCATGTTTG-GACATGGCATCAGCAATGTAG-CGAGAGC-AAG
* ** *
60546196 TGTAAGACCATGTTTGGGACATGGCATCGGCCT
63 TGTAAGACCATGTCTAAGACATGGCATCGGCAT
* *
60546229 CGACATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCA
1 TGATATGTGAGCCAGTGTAAGACCATGTTT-GGACATGGCATCA
60546273 ATAATTCACC
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
95 1 0.01
96 116 0.96
97 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (95 bp):
TGATATGTGAGCCAGTGTAAGACCATGTTTGGACATGGCATCAGCAATGTAGCGAGAGCAAGTGT
AAGACCATGTCTAAGACATGGCATCGGCAT
Found at i:60549951 original size:44 final size:44
Alignment explanation
Indices: 60549902--60550074 Score: 193
Period size: 44 Copynumber: 3.8 Consensus size: 44
60549892 TGTAACCCGC
*
60549902 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCAT
* ***
60549946 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCATTCAT
* *** * *
60549992 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATT--CAT
*
60550039 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
60550075 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
44 36 0.34
45 2 0.02
46 36 0.34
47 32 0.30
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCAT
Found at i:60550067 original size:93 final size:91
Alignment explanation
Indices: 60549910--60550079 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 91
60549900 GCCCATAAGT
* *
60549910 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCATCCATAAGTGAACTCGGACTCAACTCAACG
60549975 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
60550001 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT--CATCCATAAGTGAACTCGGACTCAACTCAA
*
60550066 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
60550080 CAAATATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 30 0.41
93 43 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:60550094 original size:46 final size:44
Alignment explanation
Indices: 60549907--60550094 Score: 127
Period size: 46 Copynumber: 4.1 Consensus size: 44
60549897 CCCGCCCATA
* ****
60549907 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
60549950 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
60550000 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
60550043 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
60550090 AGTGA
1 AGTGA
60550095 CATGTCACTT
Statistics
Matches: 116, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 35 0.30
46 36 0.31
47 28 0.24
48 4 0.03
49 3 0.03
50 4 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:60552472 original size:15 final size:15
Alignment explanation
Indices: 60552440--60552503 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
60552430 CAAAGATAAC
60552440 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
60552453 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
60552468 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
60552483 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
60552498 AAGAAA
1 AAGAAA
60552504 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 3 0.07
15 35 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:60555483 original size:46 final size:46
Alignment explanation
Indices: 60555416--60555590 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
60555406 TGTAACCCGC
60555416 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
60555462 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
60555512 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
60555555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
60555591 ATGCCCAAAT
Statistics
Matches: 112, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.04
44 1 0.01
46 64 0.57
47 27 0.24
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:60555536 original size:93 final size:93
Alignment explanation
Indices: 60555424--60555595 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60555414 GCCCATAAGT
* *
60555424 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
60555489 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
60555517 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
60555582 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
60555596 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:60557177 original size:25 final size:25
Alignment explanation
Indices: 60557131--60557178 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
60557121 TTATAATATG
* * *
60557131 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
60557156 AAAATGACCATTATACCTCTAGG
1 AAAATGACCATTATACCCCTAGG
60557179 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:60557262 original size:11 final size:11
Alignment explanation
Indices: 60557226--60557281 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60557216 CATGGTATGT
60557226 ATGATATGCAC
1 ATGATATGCAC
* *
60557237 ATGAAATG--T
1 ATGATATGCAC
60557246 ATGATATGCAC
1 ATGATATGCAC
*
60557257 ATGATATG--T
1 ATGATATGCAC
60557266 ATGATATGCAC
1 ATGATATGCAC
60557277 ATGAT
1 ATGAT
60557282 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60557281 original size:20 final size:20
Alignment explanation
Indices: 60557215--60557281 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60557205 ATTTTGATAA
*
60557215 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60557235 ACATGAAATGTATGATATGC
1 ACATGATATGTATGATATGC
60557255 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60557275 ACATGAT
1 ACATGAT
60557282 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60557359 original size:26 final size:26
Alignment explanation
Indices: 60557330--60557460 Score: 168
Period size: 25 Copynumber: 5.2 Consensus size: 26
60557320 GGAGGAAGTG
60557330 TAAAAGGGCTTATGCCCCAGTTATGA
1 TAAAAGGGCTTATGCCCCAGTTATGA
60557356 TAAAAGGGCTTATGCCCCAGTTATGA
1 TAAAAGGGCTTATGCCCCAGTTATGA
60557382 T-AAAGGGCTTATGCCCCAGTTAT--
1 TAAAAGGGCTTATGCCCCAGTTATGA
60557405 TAAAAGGGCTT-TGCCCCAGTTAT--
1 TAAAAGGGCTTATGCCCCAGTTATGA
*
60557428 TAAAAGAGGC-TAGGCCTCCAGTTAAATGA
1 TAAAAG-GGCTTATGCC-CCAGTT--ATGA
60557457 TAAA
1 TAAA
60557461 GCAGCTATGC
Statistics
Matches: 96, Mismatches: 1, Indels: 13
0.87 0.01 0.12
Matches are distributed among these distances:
23 20 0.21
24 15 0.16
25 28 0.29
26 27 0.28
27 2 0.02
29 4 0.04
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (26 bp):
TAAAAGGGCTTATGCCCCAGTTATGA
Found at i:60557449 original size:48 final size:49
Alignment explanation
Indices: 60557330--60557451 Score: 169
Period size: 48 Copynumber: 2.5 Consensus size: 49
60557320 GGAGGAAGTG
60557330 TAAAAGGGCTTATGCCCCAGTTATGATAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT-ATAAAAGGGCTTATGCCCCAGTTAT
*
60557380 GATAAAGGGCTTATGCCCCAGTTAT-TAAAAGGGCTT-TGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTATATAAAAGGGCTTATGCCCCAGTTAT
*
60557428 TAAAAGAGGC-TAGGCCTCCAGTTA
1 TAAAAG-GGCTTATGCC-CCAGTTA
60557452 AATGATAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
47 9 0.14
48 23 0.35
49 11 0.17
50 1 0.02
51 22 0.33
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATATAAAAGGGCTTATGCCCCAGTTAT
Found at i:60557681 original size:31 final size:31
Alignment explanation
Indices: 60557646--60557708 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
60557636 CGTTTACAGT
*
60557646 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATACGAAATATGA
* **
60557677 AAAGGCTTGGGCCCAGTGTTACGAAATATGA
1 AAAGGCTTCGGCCCAGTAATACGAAATATGA
60557708 A
1 A
60557709 GTGTGAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATACGAAATATGA
Found at i:60566479 original size:50 final size:52
Alignment explanation
Indices: 60566421--60566519 Score: 175
Period size: 50 Copynumber: 1.9 Consensus size: 52
60566411 TTAATAAAGT
*
60566421 CATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATAA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTATAA
60566471 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTA
60566520 AGTCCAGCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 27 0.59
51 12 0.26
52 7 0.15
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTATAA
Found at i:60569512 original size:40 final size:40
Alignment explanation
Indices: 60569407--60569622 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
60569397 CGGATGATAA
* *
60569407 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
60569447 CCGGGCTAA-CCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
60569486 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60569526 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60569566 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
60569606 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
60569623 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
38 7 0.04
39 43 0.26
40 115 0.70
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.