Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 178 of 311
Found at i:60575778 original size:47 final size:47
Alignment explanation
Indices: 60575660--60575783 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
60575650 GGATGATTGA
*
60575660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
60575708 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
60575751 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTT
60575784 TGCTTATGGG
Statistics
Matches: 68, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.43
47 28 0.41
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:60580553 original size:40 final size:39
Alignment explanation
Indices: 60580439--60580647 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 39
60580429 CGGATGATAA
* *
60580439 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATA-T
* *
60580479 TCGGGCTAAGCCCCGAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAG-TCCG-AAGGCATTTGTGCGAGTTACTATAT
*
60580520 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATAT
*
60580560 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATAT
*
60580600 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATAT
60580640 CC-GGCTAA
1 CCGGGCTAA
60580648 ATCCCCAAGG
Statistics
Matches: 151, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 11 0.07
40 102 0.68
41 37 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:60594273 original size:20 final size:21
Alignment explanation
Indices: 60594243--60594282 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
60594233 GGGACTAAAC
*
60594243 CAAACACTTAGGAAATTTTTA
1 CAAACACTTAGAAAATTTTTA
60594264 CAAA-ACTTAGAAAATTTTT
1 CAAACACTTAGAAAATTTTT
60594283 GCTATGAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (21 bp):
CAAACACTTAGAAAATTTTTA
Found at i:60594866 original size:15 final size:17
Alignment explanation
Indices: 60594848--60594879 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
60594838 TAGCATAACT
60594848 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
60594863 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
60594880 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:60600844 original size:29 final size:29
Alignment explanation
Indices: 60600811--60600870 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
60600801 AATTCTTTCA
*
60600811 AGAGGAGTTCCCAAAGAAATACATCAGTG
1 AGAGGAGTTCCAAAAGAAATACATCAGTG
60600840 AGAGGAGTTCCAAAAGAAATACATCAGTG
1 AGAGGAGTTCCAAAAGAAATACATCAGTG
60600869 AG
1 AG
60600871 CGATTCATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.17
Consensus pattern (29 bp):
AGAGGAGTTCCAAAAGAAATACATCAGTG
Found at i:60604717 original size:27 final size:27
Alignment explanation
Indices: 60604686--60604863 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
60604676 TAAATTGTAC
60604686 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** * *
60604713 TGCACTAAGTGTGCGAAATAAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60604739 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
60604767 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60604795 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60604822 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60604849 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60604864 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 103 0.82
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60604827 original size:82 final size:81
Alignment explanation
Indices: 60604687--60604842 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
60604677 AAATTGTACA
* * *
60604687 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATAAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAAGTGT
60604752 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
60604768 GCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGAT-GCACTAAGT
*
60604832 GTGCGAGTTGA
64 GTGCGAATTGA
60604843 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60604854 original size:82 final size:81
Alignment explanation
Indices: 60604683--60604863 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
60604673 GATTAAATTG
* * *
60604683 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATAAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAA
60604748 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
60604764 TGCGGCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGAT-GCACT
* **
60604828 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60604846 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60604864 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60607878 original size:27 final size:27
Alignment explanation
Indices: 60607773--60607949 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
60607763 ATATTAAGTC
* * * *
60607773 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAACT
* *
60607800 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCAACATAGTC-AACT
*
60607828 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCAACATAGTCAACT
** * *
60607855 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAACT
* * **
60607882 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAACT
* *
60607909 CTCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAACT
60607936 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60607950 TGTACAATTT
Statistics
Matches: 131, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAACT
Found at i:60607915 original size:54 final size:54
Alignment explanation
Indices: 60607773--60607950 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
60607763 ATATTAAGTC
* * * * *
60607773 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAA-T
** * *
60607828 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** *
60607882 CGCACACTTAGTGC-ATCATATTCATTTCTCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
60607936 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60607951 GTACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 59 0.56
55 45 0.43
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:60607940 original size:81 final size:82
Alignment explanation
Indices: 60607794--60607949 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 82
60607784 TGCTATATAA
* *
60607794 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
60607859 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * ** *
60607876 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCTCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
60607939 ACACTTAGTGC
65 ACACTTAGTGC
60607950 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 41 0.62
82 25 0.38
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:60612888 original size:27 final size:27
Alignment explanation
Indices: 60612798--60612976 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
60612788 ATATTAAGTC
* * *
60612798 CGCACACTCAGTGCTATATAAATCAACT
1 CGCACACTTAGTGCTACAT-AGTCAACT
*
60612826 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
60612854 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
60612881 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
60612908 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* * *
60612935 CTCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
60612962 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60612977 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
27 87 0.66
28 44 0.34
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:60612954 original size:81 final size:82
Alignment explanation
Indices: 60612820--60612975 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 82
60612810 GCTATATAAA
* *
60612820 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
60612885 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * ** *
60612902 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCTCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
60612965 ACACTTAGTGC
65 ACACTTAGTGC
60612976 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 41 0.62
82 25 0.38
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:60614054 original size:53 final size:52
Alignment explanation
Indices: 60613996--60614099 Score: 158
Period size: 53 Copynumber: 2.0 Consensus size: 52
60613986 CCCTTCCCCC
60613996 TTCTTC-TTAG-CATTTTCGGCCAAGGATGATAAAAGATGAACAATTTTTTTTCT
1 TTCTTCTTTAGACA-TTT-GGCCAAGGATGAT-AAAGATGAACAATTTTTTTTCT
60614049 TTCTTCTTTAGAACATTTGGCCAAGGATGATAAAGATGAACAATTTTTTTT
1 TTCTTCTTTAG-ACATTTGGCCAAGGATGATAAAGATGAACAATTTTTTTT
60614100 GTTTTCCTCT
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
53 26 0.54
54 17 0.35
55 3 0.06
56 2 0.04
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (52 bp):
TTCTTCTTTAGACATTTGGCCAAGGATGATAAAGATGAACAATTTTTTTTCT
Found at i:60620183 original size:27 final size:27
Alignment explanation
Indices: 60620152--60620328 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
60620142 TAAATTGTAC
60620152 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** * *
60620179 TGCACTAAGTGTGCGAAATAAAT-TG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60620204 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
60620232 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60620260 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60620287 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60620314 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60620329 GACTCAATAT
Statistics
Matches: 123, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 20 0.16
27 81 0.66
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60620219 original size:53 final size:55
Alignment explanation
Indices: 60620152--60620303 Score: 184
Period size: 55 Copynumber: 2.8 Consensus size: 55
60620142 TAAATTGTAC
*
60620152 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATAAAT-TG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATAAATATGT
* * ** ** *
60620204 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTAACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATAAATATGT
* *
60620260 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAG
60620304 TTGATTATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 38 0.46
54 4 0.05
55 39 0.47
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATAAATATGT
Found at i:60633146 original size:27 final size:27
Alignment explanation
Indices: 60633115--60633292 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
60633105 TAAATTGTAC
60633115 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** * *
60633142 TGCACTAAGTGTGCGAAATAAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60633168 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
60633196 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60633224 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60633251 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60633278 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60633293 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 103 0.82
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60633256 original size:82 final size:81
Alignment explanation
Indices: 60633116--60633271 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
60633106 AAATTGTACA
* * *
60633116 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATAAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAAGTGT
60633181 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
60633197 GCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGAT-GCACTAAGT
*
60633261 GTGCGAGTTGA
64 GTGCGAATTGA
60633272 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60633283 original size:82 final size:81
Alignment explanation
Indices: 60633112--60633292 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
60633102 GATTAAATTG
* * *
60633112 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATAAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAA
60633177 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
60633193 TGCGGCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGAT-GCACT
* **
60633257 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60633275 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60633293 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATAAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60639519 original size:15 final size:15
Alignment explanation
Indices: 60639481--60639521 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
60639471 GAGTTGATCT
*
60639481 AGTCAAAGAAACTGA
1 AGTCAAAGTAACTGA
60639496 AGTCAAAGTAACTGA
1 AGTCAAAGTAACTGA
60639511 AGTCAAAGTAA
1 AGTCAAAGTAA
60639522 AGGTAATTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.20, T:0.17
Consensus pattern (15 bp):
AGTCAAAGTAACTGA
Found at i:60646406 original size:55 final size:54
Alignment explanation
Indices: 60646272--60646410 Score: 134
Period size: 55 Copynumber: 2.5 Consensus size: 54
60646262 TATGAAGGGC
* ** *
60646272 CACGCCTGTGTTGTTTTGGCAGGTTCGCCCACGGTTGCTTGGCACGGGCGTGTTG
1 CACGCCCGTGTTGTTTT-GCAGGTTCGCCCACGGTTGCAAGGCACGGGCATGTTG
* * ** * * * * *
60646327 CACACTCGTGTTAATTTGATAGGTTCGGCCATGGTTTCAAGGCACTGGCATGTTG
1 CACGCCCGTGTTGTTTTG-CAGGTTCGCCCACGGTTGCAAGGCACGGGCATGTTG
60646382 CACGCCCGTGTTGTTTTAGCAGGTTCGCC
1 CACGCCCGTGTTGTTTT-GCAGGTTCGCC
60646411 TACGACCATG
Statistics
Matches: 63, Mismatches: 19, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
54 1 0.02
55 61 0.97
56 1 0.02
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.32
Consensus pattern (54 bp):
CACGCCCGTGTTGTTTTGCAGGTTCGCCCACGGTTGCAAGGCACGGGCATGTTG
Found at i:60652460 original size:43 final size:42
Alignment explanation
Indices: 60652399--60652508 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
60652389 CAATACCAAC
* * * *
60652399 GTCCCAGACGTGGTCTTACATGTAATCAAATATC-AATGCCACT
1 GTCCCAGACATGGTCTTACACGTAATCAAATA-CGAA-GCAAAT
* *
60652442 GTCCCAGGCATGGTCTTACACGAAATCAAATACGAAGCAAAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATACGAAGCAAAT
*
60652484 GTCCCAGAAATGGTCTTACACGTAA
1 GTCCCAGACATGGTCTTACACGTAA
60652509 ATCATAAGTC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 27 0.47
43 30 0.53
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATACGAAGCAAAT
Found at i:60652547 original size:44 final size:44
Alignment explanation
Indices: 60652394--60652637 Score: 198
Period size: 44 Copynumber: 5.6 Consensus size: 44
60652384 TCGTACAATA
* * * *
60652394 CCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCAATG
1 CCAACGTCCCAGATGTGGTCTTACACGTAAATCATAA-GTCAGTG
*** *
60652437 CC-ACTGTCCCAGGCATGGTCTTACACG-AAATCA-AA-T-ACGAAG
1 CCAAC-GTCCCAGATGTGGTCTTACACGTAAATCATAAGTCA-G-TG
* * **
60652479 CAAATGTCCCAGAAATGGTCTTACACGTAAATCATAAGTCAGTG
1 CCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGTCAGTG
* * * *
60652523 ACAACGTCCTAGATGTGGTCTTACACGTAAATCATGAGTCAATG
1 CCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGTCAGTG
* * *
60652567 CCAGCATCCCAGATGTGGTCTTACACATAAATCATAAGTC-GATG
1 CCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGTCAG-TG
**
60652611 CCAACGTCCCAGACATGGTCTTACACG
1 CCAACGTCCCAGATGTGGTCTTACACG
60652638 ATAACACATA
Statistics
Matches: 161, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 24 0.15
43 35 0.22
44 97 0.60
45 2 0.01
46 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (44 bp):
CCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGTCAGTG
Found at i:60667825 original size:47 final size:47
Alignment explanation
Indices: 60667707--60667843 Score: 158
Period size: 46 Copynumber: 2.9 Consensus size: 47
60667697 GGATGGTTGA
*
60667707 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
60667755 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
60667798 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC
60667844 CGAGCTCATT
Statistics
Matches: 75, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.39
47 29 0.39
48 3 0.04
50 4 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:60667858 original size:39 final size:37
Alignment explanation
Indices: 60667804--60667914 Score: 165
Period size: 39 Copynumber: 3.0 Consensus size: 37
60667794 AACTAGGCAT
*
60667804 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG--G
*
60667843 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
60667880 -CG-GCTCGTTGAGTTGAGTCCGAGTTCACTTA-GGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
60667914 C
1 C
60667915 GGGTTACATG
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
34 3 0.04
35 28 0.41
36 2 0.03
37 1 0.01
39 34 0.50
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.30
Consensus pattern (37 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
Found at i:60675339 original size:46 final size:46
Alignment explanation
Indices: 60675289--60675461 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
60675279 TGGTTGAGCA
60675289 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60675335 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60675380 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60675428 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60675462 GGGCGGGTTA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60675445 original size:93 final size:93
Alignment explanation
Indices: 60675286--60675456 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60675276 GGATGGTTGA
* *
60675286 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60675351 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60675379 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60675444 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60675457 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60682886 original size:46 final size:46
Alignment explanation
Indices: 60682830--60683001 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
60682820 TGGTTGAGCA
60682830 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60682876 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60682921 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
60682969 -CCTGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60683002 GGGCGGGTTA
Statistics
Matches: 106, Mismatches: 10, Indels: 21
0.77 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 17 0.16
46 46 0.43
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60682986 original size:93 final size:92
Alignment explanation
Indices: 60682827--60682996 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
60682817 GGATGGTTGA
*
60682827 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
60682892 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGT-CGAGTTCGTGAAATGTAACTAG
*
60682920 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
60682984 TTGAGTCGAGTTC
65 TTGAGTCGAGTTC
60682997 ACTTAGGGCG
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
92 9 0.12
93 65 0.88
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAAATGTAACTAG
Found at i:60686356 original size:46 final size:45
Alignment explanation
Indices: 60686306--60686481 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
60686296 TGGTTGAGCA
60686306 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
60686352 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
**
60686397 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
60686445 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60686482 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:60686462 original size:93 final size:93
Alignment explanation
Indices: 60686303--60686474 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60686293 GGATGGTTGA
***
60686303 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
60686368 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
60686396 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
60686461 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60686475 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60702343 original size:31 final size:31
Alignment explanation
Indices: 60702308--60702371 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
60702298 TGTACCTGAG
60702308 TAGAACCACACAAACCGTCAATCTTTTTATT
1 TAGAACCACACAAACCGTCAATCTTTTTATT
*
60702339 TAGAACCACATAAACCGTCAATCTTTTTATT
1 TAGAACCACACAAACCGTCAATCTTTTTATT
60702370 TA
1 TA
60702372 AGAGTTCTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.34
Consensus pattern (31 bp):
TAGAACCACACAAACCGTCAATCTTTTTATT
Found at i:60706857 original size:31 final size:31
Alignment explanation
Indices: 60706815--60706878 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
60706805 CCTTTTCATA
*
60706815 TTTCATTTTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
60706846 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
60706877 TT
1 TT
60706879 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:60707148 original size:23 final size:23
Alignment explanation
Indices: 60707093--60707278 Score: 304
Period size: 23 Copynumber: 8.1 Consensus size: 23
60707083 CCTAGCCTCT
* *
60707093 TTTAACAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60707116 TCTTAATAACTGGGGCATAAGCCC
1 T-TTAATAACTGGGGCATAAGCCC
60707140 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60707163 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60707185 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60707208 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
60707230 TTTAATAACTGGGGTACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
60707253 TTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60707276 TTT
1 TTT
60707279 TTCACTTCCT
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
22 44 0.29
23 87 0.57
24 21 0.14
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:60707191 original size:45 final size:46
Alignment explanation
Indices: 60707093--60707278 Score: 304
Period size: 45 Copynumber: 4.1 Consensus size: 46
60707083 CCTAGCCTCT
* *
60707093 TTTAACAACTGGGGCAAAAGCCCTCTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCT-TTAATAACTGGGGCATAAGCCC
60707140 TTTAATAACTGGGGCATAAGCCCTTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
60707185 TTTAATAACTGGGGCATAAGCCCTTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
* * *
60707230 TTTAATAACTGGGGTACAAGCCCTTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
60707276 TTT
1 TTT
60707279 TTCACTTCCT
Statistics
Matches: 133, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
45 87 0.65
46 24 0.18
47 22 0.17
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
Found at i:60707204 original size:68 final size:68
Alignment explanation
Indices: 60707093--60707278 Score: 302
Period size: 68 Copynumber: 2.7 Consensus size: 68
60707083 CCTAGCCTCT
*
60707093 TTTAACAACTGGGGCAAAAGCCCTCTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCT-TTAATAACTGGGGCATAAGCCCTTTAATAACT-GGGCATA
60707158 AGCCC
64 AGCCC
*
60707163 TTTAATAACT-GGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAG
1 TTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAG
60707227 CCC
66 CCC
* * *
60707230 TTTAATAACTGGGGTACAAGCCCTTCAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
60707279 TTCACTTCCT
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
67 22 0.20
68 67 0.61
69 12 0.11
70 9 0.08
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (68 bp):
TTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAG
CCC
Found at i:60707363 original size:20 final size:20
Alignment explanation
Indices: 60707340--60707395 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
60707330 TCACGTACAT
60707340 ATCATACATATCATGTGCAC
1 ATCATACATATCATGTGCAC
* *
60707360 ATCATACATGTCATGTGCAT
1 ATCATACATATCATGTGCAC
*
60707380 ATCATACATACCATGT
1 ATCATACATATCATGT
60707396 TTATCAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (20 bp):
ATCATACATATCATGTGCAC
Found at i:60707479 original size:24 final size:25
Alignment explanation
Indices: 60707432--60707479 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60707422 ATACATAAAC
*
60707432 CCTAAGGGTATAATAGTCATTTTTA
1 CCTAAGGGTAAAATAGTCATTTTTA
* *
60707457 CCTAGGGGTAAAATGGTCATTTT
1 CCTAAGGGTAAAATAGTCATTTT
60707480 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (25 bp):
CCTAAGGGTAAAATAGTCATTTTTA
Found at i:60708668 original size:27 final size:27
Alignment explanation
Indices: 60708638--60708702 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
60708628 GGGCATATTC
60708638 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
60708665 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
60708692 GTCTTTTTACC
1 GTCATTTTACC
60708703 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:60708704 original size:26 final size:28
Alignment explanation
Indices: 60708660--60708711 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
60708650 TACAAGGGTA
60708660 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
60708687 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
60708712 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:60708858 original size:27 final size:26
Alignment explanation
Indices: 60708847--60708997 Score: 194
Period size: 27 Copynumber: 5.7 Consensus size: 26
60708837 GTAAATTAGT
* **
60708847 GGTATTTTTGTAATTTTACAAATTAAG
1 GGTATTTTGGTAATTTTACAAA-CCAG
* *
60708874 GGTATTTCGGTAATTTCACAAACCAG
1 GGTATTTTGGTAATTTTACAAACCAG
60708900 TGGTATTTTGGTAATTTTACAAACCAG
1 -GGTATTTTGGTAATTTTACAAACCAG
60708927 TGGTATTTTGGTAATTTTACAAACCAG
1 -GGTATTTTGGTAATTTTACAAACCAG
**
60708954 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACC-AG
*
60708981 GGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTT
60708998 GTAAATCGAG
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
26 24 0.21
27 88 0.79
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAG
Found at i:60708998 original size:27 final size:27
Alignment explanation
Indices: 60708756--60709011 Score: 173
Period size: 27 Copynumber: 9.4 Consensus size: 27
60708746 GTAAGTCTAC
* *
60708756 AAACCAAGGGTATTTTAGTGATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* * *
60708783 AAACCAATGCTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTT-TAGTAA-TTTTAT
* *
60708811 AAAGTCAAGGGTA-TTTATGTAATTTTGT
1 AAA-CCAAGGGTATTTTA-GTAATTTTAT
** * *
60708839 AAA-TTAGTGGTATTTTTGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTAT
** ** * *
60708866 AAATTAAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
60708893 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTAT
* *
60708920 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTAT
* *
60708947 AAACC-AGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
*
60708973 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
60709000 AAATCGAGGGTA
1 AAACCAAGGGTA
60709012 AAACAATAAT
Statistics
Matches: 191, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
26 26 0.14
27 132 0.69
28 24 0.13
29 9 0.05
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTAT
Found at i:60709021 original size:27 final size:27
Alignment explanation
Indices: 60708991--60709119 Score: 150
Period size: 27 Copynumber: 4.8 Consensus size: 27
60708981 GGTATTTTAG
*
60708991 TAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * * *
60709018 TAATTCTATAAATCAAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* **
60709045 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
60709072 TAATTTTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
60709099 TAATTATGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
60709120 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAA
Found at i:60709157 original size:81 final size:81
Alignment explanation
Indices: 60708979--60709157 Score: 196
Period size: 81 Copynumber: 2.2 Consensus size: 81
60708969 TTGTAAACCA
* *
60708979 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAATA
1 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAATAATTATATAAATCAAGGGTAAAATA
*
60709044 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
*** * * * ** *** *
60709060 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTACTTTG
1 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAATAATTATATAAATCAAGGGTAAAATA
* *
60709125 GTAATTTTACAAGTCG
66 GTAATTCTACAAATCG
*
60709141 AGGGTATTTCAATAATT
1 AGGGTATTTCAGTAATT
60709158 GGTAAAGTAA
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAATAATTATATAAATCAAGGGTAAAATA
GTAATTCTACAAATCG
Found at i:60715738 original size:27 final size:27
Alignment explanation
Indices: 60715704--60715881 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60715694 TAAATTGTAC
60715704 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60715731 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60715757 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60715785 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60715813 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60715840 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60715867 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60715882 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60715818 original size:82 final size:81
Alignment explanation
Indices: 60715705--60715860 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60715695 AAATTGTACA
* *
60715705 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60715769 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60715786 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60715851 TGCGAGTTGA
65 TGCGAATTGA
60715861 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60715872 original size:82 final size:81
Alignment explanation
Indices: 60715701--60715881 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60715691 GAGTAAATTG
* *
60715701 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60715766 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60715782 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60715846 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60715864 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60715882 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60717847 original size:27 final size:27
Alignment explanation
Indices: 60717794--60717850 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
60717784 ACCTTCCGCA
* ** *
60717794 CCACCTACGGATGGCACTGTATTTGTC
1 CCACCTACAGATGGCACTACATCTGTC
*
60717821 CCACCTTCAGATGGCACTACATCTGTC
1 CCACCTACAGATGGCACTACATCTGTC
60717848 CCA
1 CCA
60717851 ACTCTATCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.35, G:0.18, T:0.26
Consensus pattern (27 bp):
CCACCTACAGATGGCACTACATCTGTC
Found at i:60725837 original size:26 final size:26
Alignment explanation
Indices: 60725807--60725862 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
60725797 ATGGCACAAC
60725807 TCAAAATATTCATCAAAATCAAAAAT
1 TCAAAATATTCATCAAAATCAAAAAT
60725833 TCAAAATATTCATCAAAATCAAAAAT
1 TCAAAATATTCATCAAAATCAAAAAT
60725859 TCAA
1 TCAA
60725863 GCATGGGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.57, C:0.16, G:0.00, T:0.27
Consensus pattern (26 bp):
TCAAAATATTCATCAAAATCAAAAAT
Found at i:60737256 original size:42 final size:42
Alignment explanation
Indices: 60737152--60737307 Score: 158
Period size: 44 Copynumber: 3.6 Consensus size: 42
60737142 TGTACAATGG
* * * *
60737152 CAACGT-CCAAGACGTGGTCTTACATGTAATCAAATATTGATGC
1 CAACGTCCCAA-ATGTGGTCTTACACGAAATCAAATA-CGATGC
*
60737195 C-ACTGTCCCAAACAG-GGTCTTACACGAAATCAAATACGATGC
1 CAAC-GTCCCAAA-TGTGGTCTTACACGAAATCAAATACGATGC
*
60737237 CAACGTCCCAAATGTGGTCTTACACGTAAAACATAAGT-CGATGC
1 CAACGTCCCAAATGTGGTCTTACACG-AAATCA-AA-TACGATGC
*
60737281 CAACGTCCCAGATGTGGTCTTACACGA
1 CAACGTCCCAAATGTGGTCTTACACGA
60737308 TAACACATAT
Statistics
Matches: 98, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 31 0.32
44 38 0.39
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
CAACGTCCCAAATGTGGTCTTACACGAAATCAAATACGATGC
Found at i:60740224 original size:29 final size:29
Alignment explanation
Indices: 60740164--60740230 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
60740154 AATTGTATTC
** *
60740164 ATATGGCCCACTAGGCCCAAATCACCGGT
1 ATATGGCCCACTAGGCCCAAATCAAAGCT
* *
60740193 ATATGGCCCATTAGGCCCAAATCAAATCT
1 ATATGGCCCACTAGGCCCAAATCAAAGCT
60740222 ATATGGCCC
1 ATATGGCCC
60740231 GTTCAGCCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCAAAGCT
Found at i:60753229 original size:16 final size:16
Alignment explanation
Indices: 60753201--60753234 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
60753191 TGTAATCTAT
60753201 ATAATATTTCATAATC
1 ATAATATTTCATAATC
60753217 ATAA-ATTTACATAATC
1 ATAATATTT-CATAATC
60753233 AT
1 AT
60753235 CAGGCAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
ATAATATTTCATAATC
Found at i:60754718 original size:42 final size:43
Alignment explanation
Indices: 60754669--60754773 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 43
60754659 TGAGATTATG
* *
60754669 TGTAAGACCATGTCTGGGACATTGACA-TCATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGTGACATTCATATTTGATTACA
* * *
60754711 TGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGACATTCATATTTGATTACA
* *
60754754 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCATGTCTGGGAC
60754774 GTTGGCATTG
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
42 24 0.44
43 30 0.56
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGACATTCATATTTGATTACA
Found at i:60757034 original size:24 final size:23
Alignment explanation
Indices: 60756999--60757044 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
60756989 AGAACTTTTA
60756999 ATCAAGAAGCTCACGAAA-AGCCT
1 ATCAAGAAGCTCAC-AAAGAGCCT
*
60757022 ATCAGGAATGCTCACAAAGAGCC
1 ATCAAGAA-GCTCACAAAGAGCC
60757045 ATGTAATAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.41, C:0.26, G:0.20, T:0.13
Consensus pattern (23 bp):
ATCAAGAAGCTCACAAAGAGCCT
Found at i:60765140 original size:20 final size:20
Alignment explanation
Indices: 60765111--60765164 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
60765101 AAAAGGGGTC
*
60765111 ACACATCCGTGTGGTTTGGG
1 ACACACCCGTGTGGTTTGGG
*
60765131 ACACACCCGTGTAGTTTGGG
1 ACACACCCGTGTGGTTTGGG
**
60765151 ACATGCCCGTGTGG
1 ACACACCCGTGTGG
60765165 GTAGGCCGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26
Consensus pattern (20 bp):
ACACACCCGTGTGGTTTGGG
Found at i:60768048 original size:20 final size:21
Alignment explanation
Indices: 60768025--60768063 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
60768015 ATTATTTTAT
60768025 ATAAAAT-CATAAAATTTGAC
1 ATAAAATACATAAAATTTGAC
* *
60768045 ATAAATTACATAGAATTTG
1 ATAAAATACATAAAATTTG
60768064 CATTAATTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (21 bp):
ATAAAATACATAAAATTTGAC
Found at i:60768061 original size:21 final size:20
Alignment explanation
Indices: 60768032--60768071 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
60768022 TATATAAAAT
60768032 CATAAAATTTGACATAAATTA
1 CATAAAATTTG-CATAAATTA
* *
60768053 CATAGAATTTGCATTAATT
1 CATAAAATTTGCATAAATT
60768072 CATGTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (20 bp):
CATAAAATTTGCATAAATTA
Found at i:60770126 original size:37 final size:37
Alignment explanation
Indices: 60770076--60770147 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
60770066 TAAATGTTAG
60770076 GATTATAGAAATATCACTGAGTTTTACTCAGCGTAAA
1 GATTATAGAAATATCACTGAGTTTTACTCAGCGTAAA
60770113 GATTATAGAAATATCACTGAGTTTTACTCAGCGTA
1 GATTATAGAAATATCACTGAGTTTTACTCAGCGTA
60770148 CAGTTTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (37 bp):
GATTATAGAAATATCACTGAGTTTTACTCAGCGTAAA
Found at i:60771141 original size:2 final size:2
Alignment explanation
Indices: 60771136--60771176 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
60771126 GTATATATGA
* * *
60771136 TC TC TC TC TC TC TC TC TC TC AC TT TC TC TC TC CC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
60771177 TTTCAACACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:60779725 original size:15 final size:16
Alignment explanation
Indices: 60779705--60779738 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
60779695 AAGAGAGAAA
60779705 ATGTGTGT-GTGAGAG
1 ATGTGTGTGGTGAGAG
*
60779720 ATGTGTGTGGTGAGGG
1 ATGTGTGTGGTGAGAG
60779736 ATG
1 ATG
60779739 ACTTTTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (16 bp):
ATGTGTGTGGTGAGAG
Found at i:60783785 original size:34 final size:33
Alignment explanation
Indices: 60783743--60783811 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 33
60783733 TTGTTTGCAT
* *
60783743 ACTGTACTAATA-TGTTAATGGGCTTAGGCCCAG
1 ACTGTACTAATACTG-AAACGGGCTTAGGCCCAG
*
60783776 ACTGTTACTATTACTGAAACGGGCTTAGGCCCAG
1 ACTG-TACTAATACTGAAACGGGCTTAGGCCCAG
60783810 AC
1 AC
60783812 CGCTACGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 4 0.13
34 25 0.81
35 2 0.06
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (33 bp):
ACTGTACTAATACTGAAACGGGCTTAGGCCCAG
Found at i:60789483 original size:30 final size:30
Alignment explanation
Indices: 60789437--60789496 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
60789427 TTCCCGAGCC
* *
60789437 TAGGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
* *
60789467 TAGGGGAAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
60789497 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATGTAATTATGCAAAAGTT
Found at i:60804920 original size:28 final size:27
Alignment explanation
Indices: 60804887--60804939 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
60804877 TTAGAATACT
*
60804887 TTAGTTTCCTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
60804915 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
60804940 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:60804926 original size:27 final size:27
Alignment explanation
Indices: 60804896--60804994 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
60804886 TTTAGTTTCC
60804896 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
60804923 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
60804950 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
60804977 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
60804995 CCCAATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:60805230 original size:27 final size:27
Alignment explanation
Indices: 60804999--60805228 Score: 271
Period size: 27 Copynumber: 8.5 Consensus size: 27
60804989 AGTACCCCCA
*
60804999 ATTTACAGAATTACCATTTTACCCCCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
60805026 ATTTACATAATTACCATTTTACCCCCA
1 ATTTACAGAATTACCATTTTACCCTCG
* *
60805053 ATTTACATAATTACCATTTTACCCCCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
60805080 ATTTACATAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* *
60805107 ACTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * * *
60805134 ATTTACAGAAGTACCGTGTTACCCTTG
1 ATTTACAGAATTACCATTTTACCCTCG
* ** * *
60805161 ATTTATAGAATTACTGTTTAACCCTTG
1 ATTTACAGAATTACCATTTTACCCTCG
* *
60805188 ATTTATAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
60805215 ATTTACAAAATTAC
1 ATTTACAGAATTAC
60805229 TAAAAAACCC
Statistics
Matches: 182, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.38
Consensus pattern (27 bp):
ATTTACAGAATTACCATTTTACCCTCG
Found at i:60805257 original size:26 final size:27
Alignment explanation
Indices: 60805221--60805399 Score: 103
Period size: 27 Copynumber: 6.7 Consensus size: 27
60805211 CTCGATTTAC
60805221 AAAATTACTAAAAAACCC-TAGTCTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
* * * *
60805247 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
* * * *
60805274 AAAATTAC-AGAAATACCCTAAATTTGT
1 AAAATTACTA-AAAAACCCTTAGTCTGT
* * * * *
60805301 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
* * *
60805328 AAAATTACTAAAATACCAC-TGGTTTGT
1 AAAATTACTAAAAAACC-CTTAGTCTGT
* * * * * *
60805355 GAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
* *
60805382 AAAATTACCAAAATACCC
1 AAAATTACTAAAAAACCC
60805400 CTGATTTACA
Statistics
Matches: 127, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
26 18 0.14
27 107 0.84
28 2 0.02
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACTAAAAAACCCTTAGTCTGT
Found at i:60805287 original size:27 final size:27
Alignment explanation
Indices: 60805244--60805492 Score: 166
Period size: 27 Copynumber: 9.1 Consensus size: 27
60805234 AACCCTAGTC
* *
60805244 TGTAAAATTGCTA-AAATACCCTTGGTT
1 TGTAAAATTAC-AGAAATACCCTTGATT
**
60805271 TGTAAAATTACAGAAATACCCTAAATT
1 TGTAAAATTACAGAAATACCCTTGATT
* *
60805298 TGTAAAATTACCA-AAATACCCCTAATT
1 TGTAAAATTA-CAGAAATACCCTTGATT
*
60805325 TGTAAAATTACTA-AAATACCAC-TGGTT
1 TGTAAAATTAC-AGAAATACC-CTTGATT
* * **
60805352 TGTGAAATTACTGAAATACCCTCAATT
1 TGTAAAATTACAGAAATACCCTTGATT
*
60805379 TGTAAAATTACCA-AAATACCCCTGATT
1 TGTAAAATTA-CAGAAATACCCTTGATT
** * * *
60805406 TACAAAGTTATAGAAATACCCTTAACTT
1 TGTAAAATTACAGAAATACCCTTGA-TT
* * * *
60805434 TATAAAAATTATAGAAATACCATTGGTT
1 TGT-AAAATTACAGAAATACCCTTGATT
** * * *
60805462 TACAAAATTACTGAAATACCTTTGGTT
1 TGTAAAATTACAGAAATACCCTTGATT
60805489 TGTA
1 TGTA
60805493 GATTTACCAA
Statistics
Matches: 177, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.02
27 143 0.81
28 12 0.07
29 18 0.10
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACAGAAATACCCTTGATT
Found at i:60805318 original size:54 final size:52
Alignment explanation
Indices: 60805221--60805454 Score: 191
Period size: 54 Copynumber: 4.3 Consensus size: 52
60805211 CTCGATTTAC
* * * * **
60805221 AAAATTACTAAAAAACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTAC-AAAATACCCTAATTTGTAAAATTACTAAAATACCCTTAATTTGT
* *
60805274 AAAATTACAGAAATACCCTAAATTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACA-AAATACCCT-AATTTGTAAAATTACTAAAATACCCTTAATTTGT
** * * *
60805328 AAAATTACTAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGT
1 AAAATTAC-AAAATACC-CTAATTTGTAAAATTACTAAAATACCCTTAATTTGT
* ** * *
60805382 AAAATTACCAAAATACCCCTGATTTACAAAGTTA-TAGAAATACCCTTAACTTTAT
1 AAAATTA-CAAAATA-CCCTAATTTGTAAAATTACTA-AAATACCCTTAA-TTTGT
*
60805437 AAAAATTATAGAAATACC
1 -AAAATTACA-AAATACC
60805455 ATTGGTTTAC
Statistics
Matches: 147, Mismatches: 24, Indels: 18
0.78 0.13 0.10
Matches are distributed among these distances:
52 1 0.01
53 17 0.12
54 104 0.71
55 13 0.09
56 12 0.08
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31
Consensus pattern (52 bp):
AAAATTACAAAATACCCTAATTTGTAAAATTACTAAAATACCCTTAATTTGT
Found at i:60805351 original size:81 final size:81
Alignment explanation
Indices: 60805221--60805428 Score: 269
Period size: 81 Copynumber: 2.6 Consensus size: 81
60805211 CTCGATTTAC
* * * * *
60805221 AAAATTACTAAAA-AACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACAGA
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTTGGTTTGTAAAATTACAGA
60805285 AATACCCTAAATTTGT
66 AATACCCTAAATTTGT
* *
60805301 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCAC-TGGTTTGTGAAATTACTG
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACAG
*
60805365 AAATACCCTCAATTTGT
65 AAATACCCTAAATTTGT
* ** *
60805382 AAAATTACCAAAATACCCCTGATTTACAAAGTTA-TAGAAATACCCTT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTA-AAATACCCTT
60805429 AACTTTATAA
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
80 15 0.13
81 96 0.86
82 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTTGGTTTGTAAAATTACAGA
AATACCCTAAATTTGT
Found at i:60805573 original size:27 final size:27
Alignment explanation
Indices: 60805543--60805602 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
60805533 ACCCCTATTA
* *
60805543 GGTAAAAAGA-CTGTAAAGCCTCTGTAG
1 GGTAAAAAGATC-GTAAAGCCCCCGTAG
**
60805570 GGTAAAGTGATCGTAAAGCCCCCGTAG
1 GGTAAAAAGATCGTAAAGCCCCCGTAG
60805597 GGTAAA
1 GGTAAA
60805603 GTGACCGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGATCGTAAAGCCCCCGTAG
Found at i:60805603 original size:27 final size:27
Alignment explanation
Indices: 60805555--60805634 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
60805545 TAAAAAGACT
* *
60805555 GTAAAGCCTCTGTAGGGTAAAGTGATC
1 GTAAAGCCCCTGTAGGGTAAAGTGACC
*
60805582 GTAAAGCCCCCGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTAGGGTAAAGTGACC
* *
60805609 GTAATA-CCCCTGTATGGTAAAATGAC
1 GTAA-AGCCCCTGTAGGGTAAAGTGAC
60805635 GAATATGCCC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 45 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (27 bp):
GTAAAGCCCCTGTAGGGTAAAGTGACC
Found at i:60806902 original size:20 final size:20
Alignment explanation
Indices: 60806879--60806933 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
60806869 TAAACATGGT
60806879 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
60806899 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
60806919 ACGTATGATATGCAC
1 ATGTATGATATGCAC
60806934 TTGATGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:60807048 original size:24 final size:23
Alignment explanation
Indices: 60806988--60807139 Score: 196
Period size: 24 Copynumber: 6.4 Consensus size: 23
60806978 GAGGAAGTGA
60806988 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
60807011 TAAATGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
60807034 CAAAAGGGCTTATGCCCCAATTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
**
60807058 CAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
60807082 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
60807105 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
60807130 AAAAGAGGCT
1 AAAAG-GGCT
60807140 AGGCCTCTAG
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
23 41 0.37
24 66 0.59
25 5 0.04
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:60807078 original size:71 final size:71
Alignment explanation
Indices: 60806988--60807139 Score: 232
Period size: 71 Copynumber: 2.1 Consensus size: 71
60806978 GAGGAAGTGA
** * *
60806988 AAAAGGGCTTATGCCCCAGTTATTAAATGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
60807053 ATTATC
66 ATTATC
*
60807059 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
* *
60807124 GTTATT
66 ATTATC
60807130 AAAAGAGGCT
1 AAAAG-GGCT
60807140 AGGCCTCTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 69 0.95
72 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
ATTATC
Found at i:60807087 original size:47 final size:46
Alignment explanation
Indices: 60806989--60807132 Score: 198
Period size: 47 Copynumber: 3.1 Consensus size: 46
60806979 AGGAAGTGAA
* * *
60806989 AAAGGGCTTATGCCCCAGTTATTAAATGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-T
* **
60807036 AAAGGGCTTATGCCCCAATTATCAAAAGGGCTTACACCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
60807083 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
60807130 AAA
1 AAA
60807133 AGAGGCTAGG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 66 0.78
48 19 0.22
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:60807382 original size:31 final size:31
Alignment explanation
Indices: 60807347--60807410 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
60807337 CGTTTACAGT
*
60807347 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
60807378 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60807409 AA
1 AA
60807411 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60811028 original size:12 final size:12
Alignment explanation
Indices: 60811011--60811039 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
60811001 CACATGAGCG
60811011 TGTGGTCGCCCA
1 TGTGGTCGCCCA
60811023 TGTGGTCGCCCA
1 TGTGGTCGCCCA
60811035 TGTGG
1 TGTGG
60811040 CAGGCCCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.38, T:0.28
Consensus pattern (12 bp):
TGTGGTCGCCCA
Found at i:60814901 original size:9 final size:9
Alignment explanation
Indices: 60814886--60814935 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
60814876 TCCAAGTAAG
60814886 ATAAAATAA
1 ATAAAATAA
*
60814895 TTAAAATAA
1 ATAAAATAA
* *
60814904 CTAAGATAA
1 ATAAAATAA
60814913 ATAAAATAGA
1 ATAAAATA-A
60814923 AT--AATAA
1 ATAAAATAA
60814930 ATAAAA
1 ATAAAA
60814936 GATTAGAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
7 3 0.09
8 4 0.12
9 23 0.70
10 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (9 bp):
ATAAAATAA
Found at i:60814925 original size:23 final size:22
Alignment explanation
Indices: 60814882--60814935 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
60814872 CGAATCCAAG
*
60814882 TAAGATAAAATAATTAAAATAA
1 TAAGATAAAATAAATAAAATAA
*
60814904 CTAAGAT-AAATAAAATAGAATAA
1 -TAAGATAAAAT-AAATAAAATAA
60814927 TAA-ATAAAA
1 TAAGATAAAA
60814936 GATTAGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 2 0.07
22 10 0.37
23 15 0.56
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (22 bp):
TAAGATAAAATAAATAAAATAA
Found at i:60821060 original size:46 final size:45
Alignment explanation
Indices: 60820999--60821092 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 45
60820989 TATCGATATA
60820999 TCAGCTCGTAAGAGCTTACTGTTCTCAGCTC-ATATGAGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTGTT-TCAGCTCAATA-GAGCTTACTGT
*
60821045 TCAGCTCGTCAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTGT
60821090 TCA
1 TCA
60821093 TCAGCTTAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
45 21 0.46
46 25 0.54
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (45 bp):
TCAGCTCGTAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTGT
Found at i:60821087 original size:45 final size:46
Alignment explanation
Indices: 60820999--60821092 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 46
60820989 TATCGATATA
60820999 TCAGCTCGTAAGAGCTTACTGTTCTCAGCTCATATGAGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTGTTCTCAGCTCATATGAGCTTACTGT
*
60821045 TCAGCTCGTCAGAGCTTACTGTT-TCAGCTCA-ATAGAGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTGTTCTCAGCTCATAT-GAGCTTACTGT
60821090 TCA
1 TCA
60821093 TCAGCTTAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
44 2 0.04
45 22 0.48
46 22 0.48
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (46 bp):
TCAGCTCGTAAGAGCTTACTGTTCTCAGCTCATATGAGCTTACTGT
Found at i:60823884 original size:435 final size:436
Alignment explanation
Indices: 60823063--60823940 Score: 1262
Period size: 435 Copynumber: 2.0 Consensus size: 436
60823053 TCAAGCTTTT
*
60823063 ACTTATGTAACATCCCAAAAAATCAAGGGTTAGTAGAATCGAGTTTGTGAATCGAGAGAGAGTGG
1 ACTTTTGTAACATCCCAAAAAATCAAGGGTTAGTAGAATCGAGTTTGTGAATCGAGAGAGAGTGG
*
60823128 TCATGCCTTAACTTTTTAGATTATCTATGCACTTTTAGGAAATAAATGAGGTGTTGGTTTGTTGG
66 TCATGCCTTAACTTTTTAGATTATCTATGCACTTTTAGGAAATAAATGAGGTATTGGTTTGTTGG
* * * * *
60823193 TTAAGTATTAGTGAAATGTTTCTTAAAACCCAAGTTCCAATCCCTTCTCTGGCGTCATTTTTATT
131 TTAAGTATTAGTGAAACGTTTCTTAAAACCCAAGTTCAAATCCATTCTCTCGCATCATTTTTATT
* * *
60823258 ATTTTTCAAATTTTGTCTTAAAGCCTAATATGTGACATGCCTTGTTTTTAAAATAAATATTGCAA
196 ATTTTGCAAATTTTGTCTTAAACCCTAATATGTGACATGCCTTGTTTTTAAAATAAATATTGAAA
*
60823323 AATTATTTCAAGAATGAGGAAAAAACCTAATGGTTAAAAGAAACATGAGAAAGTATGGAAATTAA
261 AATTATTTCAAGAATGAGGAAAAAACCTAATGGTTAAAAGAAACATGAGAAAATATGGAAATTAA
* * * *
60823388 ATGAGGTCCCAAGTTTGAAAACTTTCCTTTGTGAAATAATTAAATGTTGCAAAATCCCTTG-TTC
326 ATGAGGTCCCAAGTTTGAAAACCTTCCCTCGCGAAATAATTAAATGTTGCAAAATCCCTTGTTTC
** *
60823452 TTAATTTGTGTGTCATCCATACCCTTGAAACCTAAGTATAAATACA
391 TTAATGCGTGTGTCATCCATACCCTTGAAACCAAAGTATAAATACA
* ** * * *
60823498 ACTTTTGTAATATCCC-AAAAATCGGGGGTTAGTAGAATC-AGGTTTTTGAATCGAGTGAGAGTT
1 ACTTTTGTAACATCCCAAAAAATCAAGGGTTAGTAGAATCGA-GTTTGTGAATCGAGAGAGAGTG
* * *
60823561 GTCATGCCTTAATTTTTTAGATTATCTATGCATTTTTAGGAAATAAAAT-AGGTATTGGTTTTTT
65 GTCATGCCTTAACTTTTTAGATTATCTATGCACTTTTAGGAAAT-AAATGAGGTATTGGTTTGTT
* * * * *
60823625 GGTTAAGTGTTAGTGAAGCGTTTCTTGAAACCCAAGTTTAAATCCATTCTCTCGCATGATTTTTA
129 GGTTAAGTATTAGTGAAACGTTTCTTAAAACCCAAGTTCAAATCCATTCTCTCGCATCATTTTTA
* * * *
60823690 TTATTTTGCAAATTTTTTTCTTAAACCCTAGTATGTGACATGTCTTGTTTTTAAAATAATTATTG
194 TTATTTTGCAAA-TTTTGTCTTAAACCCTAATATGTGACATGCCTTGTTTTTAAAATAAATATTG
* * *
60823755 AAAAATTATTTTAAGAATGAGGAAAAATCCTAATGGTTAAAAGAAATATGAGAAAATATGGAAAT
258 AAAAATTATTTCAAGAATGAGGAAAAAACCTAATGGTTAAAAGAAACATGAGAAAATATGGAAAT
** *
60823820 TAAATGAGGTCCCAAGTTTGAATCCCTTCCCTCGCGAAATAATTAAAAT-TTGCAAAGTCCCTTG
323 TAAATGAGGTCCCAAGTTTGAAAACCTTCCCTCGCGAAATAATT-AAATGTTGCAAAATCCCTTG
* * *
60823884 TTTTTTTGATGCGTGTGTCATCCATACCCTTGAATCCAAAGTATAAATACA
387 -TTTCTTAATGCGTGTGTCATCCATACCCTTGAAACCAAAGTATAAATACA
*
60823935 AATTTT
1 ACTTTT
60823941 TATTTTATTT
Statistics
Matches: 391, Mismatches: 46, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
433 1 0.00
434 161 0.41
435 177 0.45
436 4 0.01
437 48 0.12
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (436 bp):
ACTTTTGTAACATCCCAAAAAATCAAGGGTTAGTAGAATCGAGTTTGTGAATCGAGAGAGAGTGG
TCATGCCTTAACTTTTTAGATTATCTATGCACTTTTAGGAAATAAATGAGGTATTGGTTTGTTGG
TTAAGTATTAGTGAAACGTTTCTTAAAACCCAAGTTCAAATCCATTCTCTCGCATCATTTTTATT
ATTTTGCAAATTTTGTCTTAAACCCTAATATGTGACATGCCTTGTTTTTAAAATAAATATTGAAA
AATTATTTCAAGAATGAGGAAAAAACCTAATGGTTAAAAGAAACATGAGAAAATATGGAAATTAA
ATGAGGTCCCAAGTTTGAAAACCTTCCCTCGCGAAATAATTAAATGTTGCAAAATCCCTTGTTTC
TTAATGCGTGTGTCATCCATACCCTTGAAACCAAAGTATAAATACA
Found at i:60830054 original size:40 final size:40
Alignment explanation
Indices: 60829996--60830250 Score: 438
Period size: 40 Copynumber: 6.4 Consensus size: 40
60829986 TGAGAGTTAT
* *
60829996 ATATATCCGGGCGAAGTTCCGAAGAGCATTTGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
60830036 ATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
60830076 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
60830116 ATATATCCGGGCTAAGTTCCGAGGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
60830156 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
60830196 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
60830236 ATATATCCGTGCTAA
1 ATATATCCGGGCTAA
60830251 ACCTTGAAGG
Statistics
Matches: 202, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 202 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:60830322 original size:28 final size:28
Alignment explanation
Indices: 60830282--60830380 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
60830272 GAATTATGAG
* * * *
60830282 GCACTGTGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTTCAATCGA
60830310 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTCAATCGA
60830338 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTCAATCGA
60830366 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
60830381 AATCAGTCAG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTCAATCGA
Found at i:60830408 original size:56 final size:56
Alignment explanation
Indices: 60830281--60830408 Score: 134
Period size: 56 Copynumber: 2.3 Consensus size: 56
60830271 GGAATTATGA
* * ** *
60830281 GGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCGAGTTCTTCAATCG
1 GGCACAGTGTGTGCGAGCTCTTCAACCGAGCACTATGTGTGCGAAATCGTCAATCG
* * * *
60830337 AGCACTA-TGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGTCAGT-G
1 GGCAC-AGTGTGTGCGAGCTCTTCAACCGAGCACTATGTGTGCGAAATC-GTCAATCG
*
60830393 GGCACAGTGTATGCGA
1 GGCACAGTGTGTGCGA
60830409 AGTGTGTTTC
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
55 1 0.02
56 53 0.91
57 4 0.07
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (56 bp):
GGCACAGTGTGTGCGAGCTCTTCAACCGAGCACTATGTGTGCGAAATCGTCAATCG
Found at i:60837510 original size:35 final size:35
Alignment explanation
Indices: 60837471--60837542 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
60837461 CAAAATTTCC
60837471 AGATCTAGAATTTGGTGGATTTTAAATGATTTCAA
1 AGATCTAGAATTTGGTGGATTTTAAATGATTTCAA
60837506 AGATCTAGAATTTGGTGGATTTTAAATGATTTCAA
1 AGATCTAGAATTTGGTGGATTTTAAATGATTTCAA
60837541 AG
1 AG
60837543 GTATTTTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.39
Consensus pattern (35 bp):
AGATCTAGAATTTGGTGGATTTTAAATGATTTCAA
Found at i:60841165 original size:17 final size:19
Alignment explanation
Indices: 60841143--60841183 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
60841133 GGTTCATTAT
60841143 TGATTTATAT-TT-TAATA
1 TGATTTATATATTATAATA
*
60841160 TGATTTATATATTATATTA
1 TGATTTATATATTATAATA
60841179 TGATT
1 TGATT
60841184 AATAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGATTTATATATTATAATA
Found at i:60849423 original size:47 final size:47
Alignment explanation
Indices: 60849372--60849465 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
60849362 GTTTGATATA
60849372 TGTAAGTGTATAAATATGATGTTGAATATATGAATTTAGTTTTAGTG
1 TGTAAGTGTATAAATATGATGTTGAATATATGAATTTAGTTTTAGTG
60849419 TGTAAGTGTATAAATATGATGTTGAATATATGAATTTAGTTTTAGTG
1 TGTAAGTGTATAAATATGATGTTGAATATATGAATTTAGTTTTAGTG
60849466 AATAAATATG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (47 bp):
TGTAAGTGTATAAATATGATGTTGAATATATGAATTTAGTTTTAGTG
Found at i:60849535 original size:17 final size:19
Alignment explanation
Indices: 60849509--60849553 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
60849499 GGTTCATTAT
60849509 TGATTAATAT-TT-TAATA
1 TGATTAATATATTATAATA
* *
60849526 TGATTTATATATTATATTA
1 TGATTAATATATTATAATA
60849545 TGATTAATA
1 TGATTAATA
60849554 AAATCATGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 2 0.09
19 12 0.52
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (19 bp):
TGATTAATATATTATAATA
Found at i:60849988 original size:42 final size:41
Alignment explanation
Indices: 60849898--60850011 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 41
60849888 TATCCCGGTC
*
60849898 TCGCACACTAAGTGCCATATGTATAGCCGATGTTATTCCAA
1 TCGCACACTAAGTGCCATATATATAGCCGATGTTATTCCAA
* * **
60849939 ACAGCACACTAAGTGCCATATATATAGCTGATGCTT-TCTTGAA
1 TC-GCACACTAAGTGCCATATATATAGCCGATG-TTAT-TCCAA
* *
60849982 TCGCACACTAAGTGCCACATATATATCCGA
1 TCGCACACTAAGTGCCATATATATAGCCGA
60850012 ATTGTCGTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 54 0.89
43 6 0.10
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (41 bp):
TCGCACACTAAGTGCCATATATATAGCCGATGTTATTCCAA
Found at i:60857145 original size:119 final size:120
Alignment explanation
Indices: 60856969--60857191 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
60856959 TACTCGTTCA
* * * *
60856969 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAT
*
60857034 ATAGTAAC-TCGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
* *
60857089 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAGCCCGG
* * * *
60857151 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGA
60857192 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 66 0.74
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:60857191 original size:40 final size:40
Alignment explanation
Indices: 60856948--60857191 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
60856938 CGGAATTTAA
** *
60856948 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60856988 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
60857028 CCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60857068 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60857107 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60857147 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60857187 CCGGA
1 CCGGA
60857192 CATCATTCAA
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.19
40 131 0.74
41 11 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60865261 original size:119 final size:120
Alignment explanation
Indices: 60865085--60865307 Score: 319
Period size: 119 Copynumber: 1.9 Consensus size: 120
60865075 TACTCGTTCA
* *
60865085 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
60865150 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
60865205 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
60865267 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
60865308 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
118 4 0.04
119 68 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:60865307 original size:40 final size:40
Alignment explanation
Indices: 60865064--60865307 Score: 309
Period size: 40 Copynumber: 6.1 Consensus size: 40
60865054 CGGAATTTAA
** *
60865064 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
60865104 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60865144 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60865184 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60865223 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60865263 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60865303 CCGGA
1 CCGGA
60865308 CATCATTCAA
Statistics
Matches: 181, Mismatches: 16, Indels: 14
0.86 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 134 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60876322 original size:40 final size:40
Alignment explanation
Indices: 60876285--60876509 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
60876275 GCTACTCGTT
* *
60876285 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
60876325 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
60876365 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
60876405 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*** * * * *
60876444 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
60876485 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
60876510 CATCATTCAA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:60876470 original size:119 final size:120
Alignment explanation
Indices: 60876287--60876509 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
60876277 TACTCGTTCA
*
60876287 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
60876352 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * ***
60876407 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
60876469 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
60876510 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:60879454 original size:44 final size:45
Alignment explanation
Indices: 60879355--60879464 Score: 152
Period size: 44 Copynumber: 2.5 Consensus size: 45
60879345 CTCAAAGAAC
* *
60879355 ACCCATCCCGGCTAGAT-CTTTCTTATATTTGAGATCAACGGATT
1 ACCCATCCGGGCTAGATCCTTTCTTATATTTGAGATCAACAGATT
* *
60879399 ACCCGTTCGGGCTAGATCCTTTC-TATATTTGAGATCAACAGATT
1 ACCCATCCGGGCTAGATCCTTTCTTATATTTGAGATCAACAGATT
* *
60879443 ACCCATCCGGGCCAAATCCTTT
1 ACCCATCCGGGCTAGATCCTTT
60879465 TCTGCAACAC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 52 0.91
45 5 0.09
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ACCCATCCGGGCTAGATCCTTTCTTATATTTGAGATCAACAGATT
Found at i:60885801 original size:27 final size:26
Alignment explanation
Indices: 60885760--60885844 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
60885750 AGGAAGCGTC
*
60885760 CTGGTGGCTAC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGTT
60885787 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
60885814 CTGGTGGCTTTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
60885841 CTGG
1 CTGG
60885845 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
26 3 0.06
27 48 0.91
28 2 0.04
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:60893420 original size:28 final size:26
Alignment explanation
Indices: 60893389--60893453 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 26
60893379 AATCACTTGA
* *
60893389 ATACCCCTATGTATAGAAAATTACTATT
1 ATACCCCTAGGTAT--AAAATTACCATT
*
60893417 ATACCCCTAGGTGTAAAATTACCATT
1 ATACCCCTAGGTATAAAATTACCATT
60893443 ATACCCCTAGG
1 ATACCCCTAGG
60893454 GTTACTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 22 0.65
28 12 0.35
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (26 bp):
ATACCCCTAGGTATAAAATTACCATT
Found at i:60893563 original size:27 final size:28
Alignment explanation
Indices: 60893524--60893638 Score: 175
Period size: 28 Copynumber: 4.2 Consensus size: 28
60893514 ATCTGATTTG
60893524 ATCTGGTGGCTCTGCCAC-ATATATCTGT
1 ATCTGGTGGCTCTGCCACGAT-TATCTGT
60893552 -TCTGGTGGCTCTGCCACGATTATCTGT
1 ATCTGGTGGCTCTGCCACGATTATCTGT
60893579 ATCTGGTGGCTCTGCCACGATTATCTGT
1 ATCTGGTGGCTCTGCCACGATTATCTGT
* *
60893607 ATCTGGTGACTCTGTCAC-ATTATCTGT
1 ATCTGGTGGCTCTGCCACGATTATCTGT
60893634 -TCTGG
1 ATCTGG
60893639 CAGCCATGCT
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
26 5 0.06
27 33 0.40
28 45 0.54
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (28 bp):
ATCTGGTGGCTCTGCCACGATTATCTGT
Found at i:60893584 original size:55 final size:55
Alignment explanation
Indices: 60893524--60893638 Score: 173
Period size: 55 Copynumber: 2.1 Consensus size: 55
60893514 ATCTGATTTG
*
60893524 ATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGGCTCTGCCACGATTATCTGT
1 ATCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACTCTGCCAC-ATTATCTGT
*
60893579 ATCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTGT
1 ATCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGCCACATTATCTGT
60893634 -TCTGG
1 ATCTGG
60893639 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
54 5 0.09
55 34 0.61
56 17 0.30
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (55 bp):
ATCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGCCACATTATCTGT
Found at i:60903629 original size:27 final size:26
Alignment explanation
Indices: 60903585--60903635 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
60903575 CTCGCTGCAA
*
60903585 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
60903612 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
60903636 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:60903701 original size:33 final size:32
Alignment explanation
Indices: 60903652--60903715 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
60903642 CTCGCTGCAA
* *
60903652 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
60903685 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
60903716 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:60903729 original size:27 final size:26
Alignment explanation
Indices: 60903677--60903736 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
60903667 ACATATATAT
*
60903677 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
60903703 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
60903730 ATATCTG
1 ATATCTG
60903737 GCAGCCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:60905332 original size:29 final size:28
Alignment explanation
Indices: 60905300--60905356 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
60905290 GCGTGATAAA
*
60905300 CTGATTTGGCTTCGGGCCATGCATATCAG
1 CTGATTTGGCTTCAGGCCATG-ATATCAG
60905329 CTGATTTGGCTTCAGGCCATGATATCAG
1 CTGATTTGGCTTCAGGCCATGATATCAG
60905357 TATTTCAGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (28 bp):
CTGATTTGGCTTCAGGCCATGATATCAG
Found at i:60906472 original size:29 final size:28
Alignment explanation
Indices: 60906416--60906474 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
60906406 AAGTGATTTT
* *
60906416 TTGACAAAAATGTCAATTACGGATTAAA
1 TTGACAAAAATGTAAATTAAGGATTAAA
* *
60906444 TTGAGAAAAATGTAAATTGAAGGGTTAAA
1 TTGACAAAAATGTAAATT-AAGGATTAAA
60906473 TT
1 TT
60906475 CTGAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.31
Consensus pattern (28 bp):
TTGACAAAAATGTAAATTAAGGATTAAA
Found at i:60906480 original size:29 final size:28
Alignment explanation
Indices: 60906421--60906480 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
60906411 ATTTTTTGAC
* * *
60906421 AAAAATGTCAATTACGGATTAAATTGAG
1 AAAAATGTAAATTAAGGATTAAATTCAG
* *
60906449 AAAAATGTAAATTGAAGGGTTAAATTCTG
1 AAAAATGTAAATT-AAGGATTAAATTCAG
60906478 AAA
1 AAA
60906481 TAAATGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.28
Consensus pattern (28 bp):
AAAAATGTAAATTAAGGATTAAATTCAG
Found at i:60909009 original size:43 final size:44
Alignment explanation
Indices: 60908952--60909114 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 44
60908942 AATGCCAGCG
* * *
60908952 TCCCGGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTA
1 TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACTA
* * * * * * *
60908995 TCCCAAACAGGGTCTTACACGAAATCATATAT-GACGCCGA-TG
1 TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACTA
*
60909037 TCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-A
1 TCCCAGACATGGTCTTACACGT-AATC-AAATATCGATGCCAACTA
** *
60909081 TCCCAGACATGGTCTTACACAAAATCACATATCG
1 TCCCAGACATGGTCTTACACGTAATCAAATATCG
60909115 GAATCCTATG
Statistics
Matches: 93, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
42 26 0.28
43 40 0.43
44 27 0.29
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACTA
Found at i:60909077 original size:86 final size:85
Alignment explanation
Indices: 60908951--60909112 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
60908941 CAATGCCAGC
* * *
60908951 GTCCCGGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAAACAGGGTCTTACAC
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAAC-ATCCCAAACAGGGTCTTACAC
* *
60909015 GAAATCATATATGACGCCGAT
65 AAAATCACATATGACGCCGAT
* * *
60909036 GTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAACATCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACACGT-AATC-AAATATCGATGCCAACATCCCAAACAGGGTCTTACA
60909100 CAAAATCACATAT
64 CAAAATCACATAT
60909113 CGGAATCCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 20 0.30
86 42 0.64
87 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAAACAGGGTCTTACACA
AAATCACATATGACGCCGAT
Found at i:60910568 original size:43 final size:43
Alignment explanation
Indices: 60910479--60910594 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
60910469 TGAGATTACA
* * **
60910479 TGTAAAACCATGTTTGGGACATTGGCATTGTATTGTGATTAGG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTATTAAGATTAGG
* **
60910522 TGTAAGACCATGTCTGGGACATTGGCATCGTGA-TAAGATTTTG
1 TGTAAGACCATGTTTGGGACATTGGCATCGT-ATTAAGATTAGG
* *
60910565 TGTAAGACCACGTTTGGGACGTTGGCATCG
1 TGTAAGACCATGTTTGGGACATTGGCATCG
60910595 GTATATGAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 61 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGTATTAAGATTAGG
Found at i:60912131 original size:34 final size:34
Alignment explanation
Indices: 60912080--60912166 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
60912070 GCAGTGTAAA
* * * *
60912080 CAGTCTGGGCCTAAGCCC-TTATCAGTAGCAATAT
1 CAGTGTGGGCCTTAGCCCATTAT-AGTAACAATAG
* * *
60912114 CAGTGTGGGCCTTAGCCCATTATGGTAATAGTAG
1 CAGTGTGGGCCTTAGCCCATTATAGTAACAATAG
60912148 CAGTGTGGGCCTTAGCCCA
1 CAGTGTGGGCCTTAGCCCA
60912167 ATTCAGTACA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 41 0.91
35 4 0.09
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATTATAGTAACAATAG
Found at i:60915140 original size:30 final size:30
Alignment explanation
Indices: 60915106--60915202 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
60915096 TAAACTAAAA
60915106 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
60915136 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
*
60915166 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
60915195 ATGAGCTA
1 -TGAGCTA
60915203 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
29 3 0.06
30 45 0.88
31 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:60923689 original size:39 final size:39
Alignment explanation
Indices: 60923632--60923757 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
60923622 GGACTTTAGC
* * * * * *
60923632 CCGGACATATTTCTAGCACGTAGCTTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
60923671 CCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
60923710 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
60923749 CCGGATATA
1 CCGGATATA
60923758 CATCACTGAA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:60930304 original size:76 final size:78
Alignment explanation
Indices: 60930217--60930373 Score: 178
Period size: 76 Copynumber: 2.0 Consensus size: 78
60930207 TTTAAACCGG
* * * * *
60930217 TATAATACCAGCTCGA-AGCCTACGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTG-G
1 TATAATACCAGCAC-ATAGCCTAC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
60930279 GACCTTAAGTCC-GA
64 GACCCTAAGTCCAGA
* * * *
60930293 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTACGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
60930358 CCCTAAGTCCAGA
66 CCCTAAGTCCAGA
60930371 TAT
1 TAT
60930374 GCATCACTGA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
75 4 0.06
76 46 0.69
77 12 0.18
78 5 0.07
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTACGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCAGA
Found at i:60930343 original size:39 final size:39
Alignment explanation
Indices: 60930251--60930373 Score: 187
Period size: 39 Copynumber: 3.2 Consensus size: 39
60930241 GGACTTTAGC
* * * *
60930251 CCGGACATATTTCCAGCACGTAGCCTG-GGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
60930289 CC-GATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
60930327 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
60930366 CCAGATAT
1 CCGGATAT
60930374 GCATCACTGA
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
37 21 0.27
38 14 0.18
39 43 0.55
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:60941686 original size:10 final size:10
Alignment explanation
Indices: 60941673--60941717 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
60941663 TCTCTCTCTC
60941673 TTTTTTC-TT
1 TTTTTTCTTT
60941682 TTTTTTCTTT
1 TTTTTTCTTT
*
60941692 TTTTTTCTTC
1 TTTTTTCTTT
60941702 TTTTTT-TTT
1 TTTTTTCTTT
*
60941711 TTGTTTC
1 TTTTTTC
60941718 CATTTTTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 14 0.45
10 17 0.55
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:60941695 original size:19 final size:19
Alignment explanation
Indices: 60941673--60941717 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
60941663 TCTCTCTCTC
60941673 TTTTTTCTT-TTTTTTCTTT
1 TTTTTTCTTCTTTTTT-TTT
60941692 TTTTTTCTTCTTTTTTTTT
1 TTTTTTCTTCTTTTTTTTT
*
60941711 TTGTTTC
1 TTTTTTC
60941718 CATTTTTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (19 bp):
TTTTTTCTTCTTTTTTTTT
Found at i:60941702 original size:13 final size:13
Alignment explanation
Indices: 60941671--60941710 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
60941661 TCTCTCTCTC
60941671 TCTT-TTTTCTTTT
1 TCTTCTTTT-TTTT
*
60941684 TTTTCTTTTTTTT
1 TCTTCTTTTTTTT
60941697 TCTTCTTTTTTTT
1 TCTTCTTTTTTTT
60941710 T
1 T
60941711 TTGTTTCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TCTTCTTTTTTTT
Found at i:60941708 original size:16 final size:16
Alignment explanation
Indices: 60941671--60941717 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
60941661 TCTCTCTCTC
60941671 TCTTTTTTCTTTTTT-T
1 TCTTTTTT-TTTTTTCT
*
60941687 TCTTTTTTTTTCTTCT
1 TCTTTTTTTTTTTTCT
60941703 T-TTTTTTTTTGTTTC
1 TCTTTTTTTTT-TTTC
60941718 CATTTTTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (16 bp):
TCTTTTTTTTTTTTCT
Found at i:60947610 original size:42 final size:42
Alignment explanation
Indices: 60947557--60947642 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
60947547 CCTTTTTGAG
* *
60947557 TTATCTGATTTCCCAGTTAAGATTATACCTCTGAAATGAGTT
1 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
60947599 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
1 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
60947641 TT
1 TT
60947643 CTCTGCTGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (42 bp):
TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
Done.