Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 179 of 311
Found at i:60948104 original size:42 final size:42
Alignment explanation
Indices: 60948057--60948142 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
60948047 CCTTTTTGAG
*
60948057 TTATCTAATTTCCCAGTTAAGATTATACCTCTGAAATGAGTT
1 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
60948099 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
1 TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
60948141 TT
1 TT
60948143 CTCTGCTGCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (42 bp):
TTATCTAATTTCCCAGGTAAGATTATACCTCTGAAATGAGTT
Found at i:60952280 original size:50 final size:49
Alignment explanation
Indices: 60952168--60952280 Score: 122
Period size: 49 Copynumber: 2.3 Consensus size: 49
60952158 ACATATTCTC
* * ** * *
60952168 ATAAAAGGAGTGTAGTAAGGTTAAAACACCTTATTTTTATCAATATCAA
1 ATAAAAGAAGTGTAATAAGGTTAAAACACCTTATTTAAATCAAAATAAA
*
60952217 ATAAATGAAGTGTAATAAGGTTGAAAA-ACCTTATTCTAAAAT-AAAATAAA
1 ATAAAAGAAGTGTAATAAGGTT-AAAACACCTTATT-T-AAATCAAAATAAA
60952267 ATAAAAGAAGTGTA
1 ATAAAAGAAGTGTA
60952281 GTTCTATATA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
49 27 0.51
50 24 0.45
51 2 0.04
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (49 bp):
ATAAAAGAAGTGTAATAAGGTTAAAACACCTTATTTAAATCAAAATAAA
Found at i:60963174 original size:50 final size:50
Alignment explanation
Indices: 60963039--60963332 Score: 279
Period size: 50 Copynumber: 5.8 Consensus size: 50
60963029 AACCGAAGCT
* * * **
60963039 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAAA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
*
60963088 ATTTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * * **
60963138 ATCTGATACACGTAGTGGCCTGCACTTAGTAATACACACGTGA-TTGAAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CC
* * * * * * *
60963189 GTCGGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAACT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* *
60963239 ATTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACC
*** * *
60963291 ATCTTAAACACATTA-TAGCCTGCACATAGTACTACACATGTG
1 ATCTGGTACAC-GTAGTAGCCTGCACTTAGTACTACACATGTG
60963333 TTCTCACAAT
Statistics
Matches: 196, Mismatches: 42, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
49 42 0.21
50 81 0.41
51 36 0.18
52 35 0.18
53 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:60963220 original size:101 final size:101
Alignment explanation
Indices: 60963100--60963281 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
60963090 TTGGTACACG
* * *
60963100 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTGGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAACCATCTGATACACGTAGTAGCCTGCACTT
60963165 AGTAATACACACGTGATTGAAGTTGTCGGGTACTCA
66 AGTAATACACACGTGATTGAAGTTGTCGGGTACTCA
* * *
60963201 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAACTATTTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAACCATCTGATACACGTAGTAGCCTGCACTT
*
60963266 AGTACTACACACGTGA
66 AGTAATACACACGTGA
60963282 CCTAAAACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAAACCATCTGATACACGTAGTAGCCTGCACTT
AGTAATACACACGTGATTGAAGTTGTCGGGTACTCA
Found at i:60969932 original size:20 final size:20
Alignment explanation
Indices: 60969904--60969941 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60969894 GTCCCCTGTA
* *
60969904 TTTTGAAAAATTTTCTAAGT
1 TTTTCAAAAATTTCCTAAGT
60969924 TTTTCAAAAATTTCCTAA
1 TTTTCAAAAATTTCCTAA
60969942 TTTATCGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (20 bp):
TTTTCAAAAATTTCCTAAGT
Found at i:60979501 original size:20 final size:21
Alignment explanation
Indices: 60979467--60979507 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
60979457 GCAGGGGAAG
60979467 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
*
60979488 GAAAGAAA-AAAAAGGGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
60979508 TCAAATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGAAAAAGAGAAAA
Found at i:60981486 original size:46 final size:46
Alignment explanation
Indices: 60981434--60981717 Score: 309
Period size: 46 Copynumber: 6.0 Consensus size: 46
60981424 AATGTACTCT
60981434 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
60981480 CTGATATGAAATGCGTAAGACCATGTAAGGCCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAA----T--G----TGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
60981536 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
60981582 TTGATATGAAATTTGTAAGACCATGGTCGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ***
60981628 GTGACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
60981674 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
60981718 TCATGTCAAA
Statistics
Matches: 207, Mismatches: 20, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
45 1 0.00
46 159 0.77
50 2 0.01
52 2 0.01
56 43 0.21
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:60981533 original size:56 final size:56
Alignment explanation
Indices: 60981447--60981560 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
60981437 ATATGAAATG
60981447 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGCGTAAGACCA
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGCGTAAGACCA
* *
60981503 TGTAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCA
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGCGTAAGACCA
60981559 TG
1 TG
60981561 GTTGAAAGAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (56 bp):
TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGCGTAAGACCA
Found at i:60988920 original size:16 final size:16
Alignment explanation
Indices: 60988901--60988931 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60988891 CTTCTTCACT
60988901 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
60988917 TACTTACTTACTTAA
1 TACTCACTTACTTAA
60988932 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:60988937 original size:20 final size:20
Alignment explanation
Indices: 60988898--60988937 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
60988888 AAACTTCTTC
* *
60988898 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
60988918 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
60988938 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:60989250 original size:53 final size:52
Alignment explanation
Indices: 60989123--60989365 Score: 198
Period size: 53 Copynumber: 4.7 Consensus size: 52
60989113 ACACGGGTAC
* * * * *
60989123 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATG-AA
* * *
60989172 CTTACCATTGCCATGTCTTGACATGGTTTTACATGGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAA
* * *
60989225 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-G-AA
* * * * *
60989280 CTTATCAATGCCATGTCTTGACATGGTATTACATGATTTCCTTGCCTTA-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAA
* * *
60989332 ---ACC-TTGCCATGCCTTGGCATGGTCTTACACGGTA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA
60989366 TCTTTAAACC
Statistics
Matches: 158, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
47 1 0.01
48 23 0.15
49 36 0.23
52 4 0.03
53 45 0.28
54 7 0.04
55 40 0.25
56 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAA
Found at i:60989314 original size:108 final size:103
Alignment explanation
Indices: 60989170--60989360 Score: 274
Period size: 108 Copynumber: 1.8 Consensus size: 103
60989160 ATCCTTTTGA
* * *
60989170 AACTTACCATTGCCATGTCTTGACATGGTTTTACATGGTAGCCTTGCCTTATGAACTCACCAATG
1 AACTTACCAATGCCATGTCTTGACATGGTATTACATGATAGCCTTGCCTTA-GAA---ACC-ATG
60989235 CCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
61 CCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
60989278 AACTTATCAATGCCATGTCTTGACATGGTATTACATGATTTCCTTGCCTTAGAAACCTTGCCATG
1 AACTTACCAATGCCATGTCTTGACATGGTATTACATGATAGCCTTGCCTTAGAAACCATGCCATG
60989343 CCTTGGCATGGTCTTACA
66 CCTTGGCATGGTCTTACA
60989361 CGGTATCTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
103 25 0.33
104 3 0.04
107 3 0.04
108 45 0.59
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (103 bp):
AACTTACCAATGCCATGTCTTGACATGGTATTACATGATAGCCTTGCCTTAGAAACCATGCCATG
CCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:60991927 original size:21 final size:21
Alignment explanation
Indices: 60991902--60991954 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
60991892 CGTTGTTTTT
*
60991902 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
** *
60991923 AATCTCACTACTACAATAACG
1 AATCTCACCGCTACAATAACC
60991944 AATCTCACCGC
1 AATCTCACCGC
60991955 CACTGCTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.36, G:0.06, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:60992396 original size:31 final size:32
Alignment explanation
Indices: 60992361--60992436 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 32
60992351 CTAAGATGTG
* *
60992361 AATTGGA-TGGAATTGACTGTGAATTTTATTA
1 AATTGGAGTGAAATTAACTGTGAATTTTATTA
*
60992392 AATT-GAGTTAAATTAACTGTGAATTTTATTA
1 AATTGGAGTGAAATTAACTGTGAATTTTATTA
*
60992423 AATT-GAGTTAAATT
1 AATTGGAGTGAAATT
60992437 TACTCGTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 2 0.05
31 39 0.95
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (32 bp):
AATTGGAGTGAAATTAACTGTGAATTTTATTA
Found at i:60994219 original size:19 final size:19
Alignment explanation
Indices: 60994197--60994235 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
60994187 TAATTATTAG
60994197 AAATAATTATAAGTCTAGT
1 AAATAATTATAAGTCTAGT
60994216 AAATAATTATAAGTCTAGT
1 AAATAATTATAAGTCTAGT
60994235 A
1 A
60994236 GTGTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (19 bp):
AAATAATTATAAGTCTAGT
Found at i:60995054 original size:12 final size:12
Alignment explanation
Indices: 60995037--60995067 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
60995027 GAAGAAAGGG
60995037 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
60995049 AGAAAAAGGGAA
1 AGAAAAAGAGAA
60995061 AGAAAAA
1 AGAAAAA
60995068 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:60995753 original size:18 final size:19
Alignment explanation
Indices: 60995717--60995753 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
60995707 AGTAATTTTA
*
60995717 TTGAATTGAATTTAGAAAT
1 TTGAATTGAATTGAGAAAT
60995736 TTGAATTGAA-TGAGAAAT
1 TTGAATTGAATTGAGAAAT
60995754 ATGTGTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (19 bp):
TTGAATTGAATTGAGAAAT
Found at i:60997847 original size:12 final size:12
Alignment explanation
Indices: 60997830--60997855 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60997820 CATGTGACCT
60997830 ATTTCAAAAGGA
1 ATTTCAAAAGGA
60997842 ATTTCAAAAGGA
1 ATTTCAAAAGGA
60997854 AT
1 AT
60997856 ATGTTGGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (12 bp):
ATTTCAAAAGGA
Found at i:61000967 original size:68 final size:65
Alignment explanation
Indices: 61000895--61001052 Score: 176
Period size: 68 Copynumber: 2.3 Consensus size: 65
61000885 ATACTATGCA
* * *
61000895 GTAGCTAGGTCACATGTGTGAT-ACGGGATGTATC-CCATGTAGACAAGAGAGCTACGGGAGAGA
1 GTAGCTAGGTCACATGTGTGATCAAGGGAAGGA-CACCATGTAGACAAGAGAGCTAC---A-AGA
61000958 TAAAT
61 TAAAT
* *
61000963 GTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAAGATAA
1 GTAGCTAGGTCACATGTGTGA-T-CAAGGGAAGGACACCATGTAGACAAGAGAGCTACAAGATAA
61001028 AT
64 AT
*
61001030 GTAGCTAGGACACCATGTGTGAT
1 GTAGCTAGGTCA-CATGTGTGAT
61001053 TCCGAAAATA
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
67 19 0.24
68 30 0.38
69 1 0.01
70 1 0.01
71 27 0.35
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (65 bp):
GTAGCTAGGTCACATGTGTGATCAAGGGAAGGACACCATGTAGACAAGAGAGCTACAAGATAAAT
Found at i:61019731 original size:38 final size:38
Alignment explanation
Indices: 61019680--61019757 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
61019670 ACGACCAATG
61019680 TATGTTTTCTATATCCTACAAAATATGCAATATTCGCA
1 TATGTTTTCTATATCCTACAAAATATGCAATATTCGCA
* *
61019718 TATGTTTTCTATATCCTGCAAAATATGTAATATTCGCA
1 TATGTTTTCTATATCCTACAAAATATGCAATATTCGCA
61019756 TA
1 TA
61019758 AAGAAAGCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (38 bp):
TATGTTTTCTATATCCTACAAAATATGCAATATTCGCA
Found at i:61026853 original size:17 final size:18
Alignment explanation
Indices: 61026827--61026864 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
61026817 ATCAAATTAT
61026827 TTTTGAAATT-GTTAAAA
1 TTTTGAAATTAGTTAAAA
* *
61026844 TTTTGTAATTAGTTTAAA
1 TTTTGAAATTAGTTAAAA
61026862 TTT
1 TTT
61026865 GATCTTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (18 bp):
TTTTGAAATTAGTTAAAA
Found at i:61026873 original size:18 final size:18
Alignment explanation
Indices: 61026852--61026890 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
61026842 AATTTTGTAA
61026852 TTAGTTTAAATTTGATCT
1 TTAGTTTAAATTTGATCT
* *
61026870 TTAGTTTAATTTTGATTT
1 TTAGTTTAAATTTGATCT
61026888 TTA
1 TTA
61026891 AATTTTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.62
Consensus pattern (18 bp):
TTAGTTTAAATTTGATCT
Found at i:61034054 original size:30 final size:30
Alignment explanation
Indices: 61034020--61034101 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
61034010 ATTTTTGAGC
*
61034020 CTAGGGGAAAAATGGTCATTTTGTTAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTTAAAGT
*
61034050 CTAGGGGCAAAATGGTTATTTTGTTAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTTAAAGT
*
61034080 CTAGGGGCAAAATGGTCGTTTT
1 CTAGGGGCAAAATGGTCATTTT
61034102 ACCAAAGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.34
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTGTTAAAGT
Found at i:61040377 original size:6 final size:6
Alignment explanation
Indices: 61040335--61040375 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
61040325 TTCATTTCAT
* * *
61040335 TTTTTC TTTTTC TTTTGC TTTTGC TTTTGC TTTTGT TTTTG
1 TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTG
61040376 TTGCTTACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (6 bp):
TTTTGC
Found at i:61042885 original size:9 final size:9
Alignment explanation
Indices: 61042873--61042923 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
61042863 TATTAAAAAC
61042873 GAGAGAGTT
1 GAGAGAGTT
*
61042882 GAGAGGGTTT
1 GAGAGAG-TT
*
61042892 GAGAGAATTT
1 GAGAG-AGTT
*
61042902 GAGAGAATT
1 GAGAGAGTT
61042911 GAGAGAGTT
1 GAGAGAGTT
61042920 GAGA
1 GAGA
61042924 TAATGATGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
9 21 0.60
10 14 0.40
ACGTcount: A:0.35, C:0.00, G:0.41, T:0.24
Consensus pattern (9 bp):
GAGAGAGTT
Found at i:61049936 original size:10 final size:10
Alignment explanation
Indices: 61049909--61049951 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
61049899 TCCTTTAGAA
*
61049909 TTTTTTTGCT
1 TTTTTTTTCT
*
61049919 TTTCTTTTCT
1 TTTTTTTTCT
61049929 TTTTTTTTCT
1 TTTTTTTTCT
61049939 TTTTTTTT-T
1 TTTTTTTTCT
61049948 TTTT
1 TTTT
61049952 GCCTTTCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.00, C:0.09, G:0.02, T:0.88
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:61049951 original size:15 final size:15
Alignment explanation
Indices: 61049918--61049950 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
61049908 ATTTTTTTGC
61049918 TTTTCTTTTCTTTTT
1 TTTTCTTTTCTTTTT
61049933 TTTTCTTTT-TTTTT
1 TTTTCTTTTCTTTTT
61049947 TTTT
1 TTTT
61049951 TGCCTTTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (15 bp):
TTTTCTTTTCTTTTT
Found at i:61067772 original size:26 final size:26
Alignment explanation
Indices: 61067736--61067796 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
61067726 GACTACTTAC
*
61067736 ACAACATAATCACTAAATTTCATAAG
1 ACAACATAATCACTAAATCTCATAAG
* * *
61067762 ACAACATAATCACTGAATCTCCTAAT
1 ACAACATAATCACTAAATCTCATAAG
61067788 ACAACATAA
1 ACAACATAA
61067797 AAGCAATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.25
Consensus pattern (26 bp):
ACAACATAATCACTAAATCTCATAAG
Found at i:61087616 original size:10 final size:10
Alignment explanation
Indices: 61087601--61087650 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
61087591 AAACATGTTG
61087601 AATTTTAATT
1 AATTTTAATT
*
61087611 AATTTTATATCA
1 AATTTTA-AT-T
*
61087623 AATTTTGATT
1 AATTTTAATT
*
61087633 AATTTTGATT
1 AATTTTAATT
61087643 AATTTTAA
1 AATTTTAA
61087651 CAGATTTGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
10 24 0.71
11 4 0.12
12 6 0.18
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (10 bp):
AATTTTAATT
Found at i:61095955 original size:46 final size:46
Alignment explanation
Indices: 61095905--61096080 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
61095895 TGGTTGAGCA
61095905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
61095951 TCCGAACTCGTTGAGTTGAGTCCGATTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61095996 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
61096044 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61096081 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61099270 original size:12 final size:12
Alignment explanation
Indices: 61099253--61099278 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61099243 TAATTAATAC
61099253 AAAAGAAAGTTG
1 AAAAGAAAGTTG
61099265 AAAAGAAAGTTG
1 AAAAGAAAGTTG
61099277 AA
1 AA
61099279 TCAGTGCCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (12 bp):
AAAAGAAAGTTG
Found at i:61103370 original size:20 final size:20
Alignment explanation
Indices: 61103345--61103384 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
61103335 GACTGTTTGT
61103345 TATGTTACTTATTATTTGCA
1 TATGTTACTTATTATTTGCA
61103365 TATGTTACTTATTATTTGCA
1 TATGTTACTTATTATTTGCA
61103385 AATGATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (20 bp):
TATGTTACTTATTATTTGCA
Found at i:61116895 original size:55 final size:55
Alignment explanation
Indices: 61116790--61116913 Score: 160
Period size: 55 Copynumber: 2.3 Consensus size: 55
61116780 CATGTCCTTA
* * * *
61116790 GCCCGTGTGCAACACTGACTTTAAAACACGGCCATGACGCATGCCCGTGTGGCTT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
* * * *
61116845 GCCTGTGTACAATACTGACTTTAATACACGGCCATCG-CACACGCCTGTGTGGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCAT-GACACACGCCCGTGTGGCCT
61116900 GCCCGTGTACAACA
1 GCCCGTGTACAACA
61116914 ATAACTCAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 57 0.98
56 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (55 bp):
GCCCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
Found at i:61122743 original size:13 final size:13
Alignment explanation
Indices: 61122725--61122749 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61122715 CTCGGTAAGG
61122725 ACACGCCCGTGTA
1 ACACGCCCGTGTA
61122738 ACACGCCCGTGT
1 ACACGCCCGTGT
61122750 GCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:61132008 original size:13 final size:13
Alignment explanation
Indices: 61131985--61132018 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61131975 ATGGACATGA
*
61131985 CCGTGTAACACGC
1 CCGTGTGACACGC
*
61131998 TCGTGTGACACGC
1 CCGTGTGACACGC
61132011 CCGTGTGA
1 CCGTGTGA
61132019 GGAAGTCCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (13 bp):
CCGTGTGACACGC
Found at i:61134781 original size:47 final size:47
Alignment explanation
Indices: 61134722--61135194 Score: 732
Period size: 47 Copynumber: 10.1 Consensus size: 47
61134712 GAAATGATAG
*
61134722 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61134769 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
61134816 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
61134863 TAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
61134910 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
61134957 TAAGGTCTAATAGCCGATGTGATGAATGTGAAGGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61135004 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61135051 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61135098 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
61135144 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
61135191 TAAG
1 TAAG
61135195 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 40 0.10
47 360 0.90
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:61135369 original size:37 final size:37
Alignment explanation
Indices: 61135313--61135391 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61135303 CCGAGCTCTA
* * *
61135313 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
61135350 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
61135387 AAGAC
1 AAGAC
61135392 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:61137479 original size:28 final size:28
Alignment explanation
Indices: 61137426--61137480 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
61137416 AGTTTAAATG
61137426 AATTTTGCATAGAAGCTATTTTTATTAA
1 AATTTTGCATAGAAGCTATTTTTATTAA
*
61137454 AATTTTGCATGGAAGCTATTTTTATTA
1 AATTTTGCATAGAAGCTATTTTTATTA
61137481 TTCTTAGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (28 bp):
AATTTTGCATAGAAGCTATTTTTATTAA
Found at i:61143766 original size:12 final size:12
Alignment explanation
Indices: 61143751--61143792 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
61143741 CATTTTGCAG
61143751 GTTATTTTTTGT
1 GTTATTTTTTGT
*
61143763 GTTATTTTAT-T
1 GTTATTTTTTGT
* *
61143774 GCTATTTTTGGT
1 GTTATTTTTTGT
61143786 GTTATTT
1 GTTATTT
61143793 CACTGTTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.12, C:0.02, G:0.17, T:0.69
Consensus pattern (12 bp):
GTTATTTTTTGT
Found at i:61143804 original size:23 final size:23
Alignment explanation
Indices: 61143753--61143797 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
61143743 TTTTGCAGGT
* * *
61143753 TATTTTTTGTGTTATTTTATTGC
1 TATTTTTGGTGTTATTTCACTGC
61143776 TATTTTTGGTGTTATTTCACTG
1 TATTTTTGGTGTTATTTCACTG
61143798 TTGTTTTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.13, C:0.07, G:0.16, T:0.64
Consensus pattern (23 bp):
TATTTTTGGTGTTATTTCACTGC
Found at i:61149292 original size:37 final size:37
Alignment explanation
Indices: 61149229--61149340 Score: 154
Period size: 37 Copynumber: 3.0 Consensus size: 37
61149219 AGCTTAGATG
* * *
61149229 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA-
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-AT
61149266 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
* * *
61149303 ATATTTCCACACGTAGTCATCGGGTCTTACCCGAAAT
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
61149340 A
1 A
61149341 TATTTCCAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAT
Found at i:61149537 original size:48 final size:48
Alignment explanation
Indices: 61149484--61149771 Score: 495
Period size: 48 Copynumber: 6.0 Consensus size: 48
61149474 CCACACCTCC
* * * *
61149484 TACATACTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
61149532 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
61149582 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
61149630 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
61149678 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
61149726 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
61149772 TAATCTTGTG
Statistics
Matches: 230, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 185 0.80
50 45 0.20
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:61149660 original size:146 final size:144
Alignment explanation
Indices: 61149484--61149770 Score: 502
Period size: 146 Copynumber: 2.0 Consensus size: 144
61149474 CCACACCTCC
* *
61149484 TACATACTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCATACATATTTCACACTAG
1 TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
*
61149549 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACC
61149614 ACATATACATATCCCA
129 ACATATACATATCCCA
* * *
61149630 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
61149695 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
61149760 ATATACATATC
131 ATATACATATC
61149771 TTAATCTTGT
Statistics
Matches: 135, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
144 45 0.33
146 90 0.67
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (144 bp):
TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCCCA
Found at i:61155848 original size:47 final size:47
Alignment explanation
Indices: 61155794--61155987 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
61155784 TTAGGATTTT
** *
61155794 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
61155841 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * *
61155888 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * * * *
61155935 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
61155982 ATGTGA
1 ATGTGA
61155988 AATTTGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:61156017 original size:48 final size:48
Alignment explanation
Indices: 61155957--61156143 Score: 259
Period size: 48 Copynumber: 3.8 Consensus size: 48
61155947 TGAACATGCA
* *
61155957 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
61156005 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
61156053 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
* *
61156105 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
61156144 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 1 0.01
50 2 0.02
51 1 0.01
52 39 0.32
53 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:61156127 original size:100 final size:96
Alignment explanation
Indices: 61155958--61156143 Score: 275
Period size: 100 Copynumber: 1.9 Consensus size: 96
61155948 GAACATGCAT
* *
61155958 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTATATGAGAAATGTATATGTGGTAAAGCCAA
61156023 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
61156054 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT-T-TATATGAGAAATGTATATGTGGTAAA
*
61156118 GCCAAATGGCTAGTGTGAAATATGTA
61 GCCAAATGGCTAATGTGAAATATGTA
61156144 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.03
98 2 0.03
99 1 0.01
100 48 0.60
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTATATGAGAAATGTATATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:61156434 original size:37 final size:37
Alignment explanation
Indices: 61156293--61156433 Score: 246
Period size: 37 Copynumber: 3.8 Consensus size: 37
61156283 ATATATTCCA
61156293 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
61156330 GGTAAGACTCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
61156367 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
61156404 GGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
61156434 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:61175347 original size:40 final size:40
Alignment explanation
Indices: 61175303--61175448 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
61175293 ACTAGCTCGT
*
61175303 AGCCTGCGGGTCTTTAAGCCTGGATACAATTCCAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAA
* *
61175343 AGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCACAA
* * *
61175383 AGCCTGTGGGTCTTTAAGCCCGGATACAGTTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAA
* *
61175423 AGCTTGCGAGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATA
61175449 ACATTCCTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 91 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAA
Found at i:61175397 original size:80 final size:80
Alignment explanation
Indices: 61175302--61175455 Score: 254
Period size: 80 Copynumber: 1.9 Consensus size: 80
61175292 TACTAGCTCG
* *
61175302 TAGCCTGCGGGTCTTTAAGCCTGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGAGTCTTTAAGCCCGGA
61175367 TAACATTCCAGCATA
66 TAACATTCCAGCATA
* * * *
61175382 TAGCCTGTGGGTCTTTAAGCCCGGATACAGTTCCAGCACGAAGCTTGCGAGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGAGTCTTTAAGCCCGGA
61175447 TAACATTCC
66 TAACATTCC
61175456 TCAAGTATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGAGTCTTTAAGCCCGGA
TAACATTCCAGCATA
Found at i:61176203 original size:2 final size:2
Alignment explanation
Indices: 61176196--61176222 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
61176186 AACCATGTAT
61176196 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
61176223 TAAATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:61178194 original size:11 final size:11
Alignment explanation
Indices: 61178178--61178202 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61178168 ATATGATATT
61178178 TTATTATTTTA
1 TTATTATTTTA
61178189 TTATTATTTTA
1 TTATTATTTTA
61178200 TTA
1 TTA
61178203 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:61185771 original size:25 final size:25
Alignment explanation
Indices: 61185722--61185802 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
61185712 CATATAACAA
* * *
61185722 GAAGCTCAAG-TGAGC-CATATCAG
1 GAAGCTCAAGAAGAGCTTATATTAG
*
61185745 GAAGGTCAAGAAGAGCTTATATTAG
1 GAAGCTCAAGAAGAGCTTATATTAG
* *
61185770 GACGCTTAAGAAGAGCTTATATTAG
1 GAAGCTCAAGAAGAGCTTATATTAG
*
61185795 GACGCTCA
1 GAAGCTCA
61185803 TAAAGAGTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
23 9 0.19
24 4 0.08
25 35 0.73
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (25 bp):
GAAGCTCAAGAAGAGCTTATATTAG
Found at i:61185809 original size:25 final size:25
Alignment explanation
Indices: 61185750--61185802 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
61185740 ATCAGGAAGG
61185750 TCAAGAAGAGCTTATATTAGGACGC
1 TCAAGAAGAGCTTATATTAGGACGC
*
61185775 TTAAGAAGAGCTTATATTAGGACGC
1 TCAAGAAGAGCTTATATTAGGACGC
61185800 TCA
1 TCA
61185803 TAAAGAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (25 bp):
TCAAGAAGAGCTTATATTAGGACGC
Found at i:61188126 original size:27 final size:26
Alignment explanation
Indices: 61188091--61188202 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
61188081 AGCATGGCTG
* *
61188091 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
61188117 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
61188145 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
61188172 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
61188199 CCAG
1 CCAG
61188203 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61188183 original size:54 final size:54
Alignment explanation
Indices: 61188093--61188199 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
61188083 CATGGCTGCC
*
61188093 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
* * *
61188147 AGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
61188200 CAGGATGCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:61189646 original size:24 final size:24
Alignment explanation
Indices: 61189619--61189665 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
61189609 CTAGATTTCC
**
61189619 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
61189643 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
61189666 CTACTGTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:61192877 original size:27 final size:28
Alignment explanation
Indices: 61192793--61192890 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
61192783 CATGAGATTG
* * * *
61192793 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
61192822 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
61192850 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
61192877 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
61192891 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:61192901 original size:27 final size:27
Alignment explanation
Indices: 61192821--61192903 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
61192811 TAAATTGTAC
* *
61192821 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
61192849 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
61192876 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
61192903 A
1 A
61192904 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:61192904 original size:29 final size:27
Alignment explanation
Indices: 61192793--61192904 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
61192783 CATGAGATTG
** * *
61192793 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
61192822 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
61192850 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
61192877 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
61192905 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:61200940 original size:27 final size:28
Alignment explanation
Indices: 61200856--61200953 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
61200846 CATGAGATTG
* * * *
61200856 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
61200885 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
61200913 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
61200940 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
61200954 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:61200964 original size:27 final size:27
Alignment explanation
Indices: 61200884--61200966 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
61200874 TAAATTGTAC
* *
61200884 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
61200912 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
61200939 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
61200966 A
1 A
61200967 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:61200967 original size:29 final size:27
Alignment explanation
Indices: 61200856--61200967 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
61200846 CATGAGATTG
** * *
61200856 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
61200885 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
61200913 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
61200940 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
61200968 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:61205861 original size:27 final size:27
Alignment explanation
Indices: 61205826--61205937 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
61205816 AGCATGGCTG
* *
61205826 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
61205852 CCAGATACAGATAATCGTGGCAGAGCTA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
61205880 CTA-AAACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
61205907 CCAGAT-CAGATAATTGTGGCAGAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
61205934 CCAG
1 CCAG
61205938 GACACTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 6 0.08
27 53 0.73
28 14 0.19
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:61212033 original size:25 final size:23
Alignment explanation
Indices: 61212005--61212050 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
61211995 AGCTCTGGAT
61212005 AGCCATATAACAGGAAGTTCAAGTG
1 AGCCATAT--CAGGAAGTTCAAGTG
*
61212030 AGCCATATTAGGAAGTTCAAG
1 AGCCATATCAGGAAGTTCAAG
61212051 AAGAGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (23 bp):
AGCCATATCAGGAAGTTCAAGTG
Found at i:61235142 original size:20 final size:20
Alignment explanation
Indices: 61235114--61235170 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
61235104 AATATTATGA
* *
61235114 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
61235134 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* **
61235154 TCCATTTTATTTACTTA
1 ACCATTCCATTTACTTA
61235171 GCATAAACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:61235894 original size:40 final size:39
Alignment explanation
Indices: 61235833--61236051 Score: 154
Period size: 40 Copynumber: 5.5 Consensus size: 39
61235823 AGATCAACAG
* *
61235833 AACACACCAGACAGAAACTTATAAGAGCTGATCCACC-T
1 AACACACCAAACAGAAGCTTATAAGAGCTGATCCACCGT
* * *
61235871 GAAGCACACTAAACAGAAGCTTATAAAAGTTGATCCAACCGT
1 -AA-CACACCAAACAGAAGCTTATAAGAGCTGATCC-ACCGT
* *
61235913 AACACGCCAAACAGAAGCTCATAAGAGCTGATCCAACCG-
1 AACACACCAAACAGAAGCTTATAAGAGCTGATCC-ACCGT
* ** * * * *
61235952 AAAAGTGCAAAACAGATGCTCATAAGAGTTGATCCAACCGT
1 AACA-CACCAAACAGAAGCTTATAAGAGCTGATCC-ACCGT
* * * * * * *
61235993 AACACGCCAAATAAAAGCTCATAAAAGTTGATCCAATCGT
1 AACACACCAAACAGAAGCTTATAAGAGCTGATCC-ACCGT
* *
61236033 AACACGCCAAATAGAAGCT
1 AACACACCAAACAGAAGCT
61236052 CGTAAAAGTT
Statistics
Matches: 151, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 5 0.03
40 137 0.91
41 8 0.05
42 1 0.01
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16
Consensus pattern (39 bp):
AACACACCAAACAGAAGCTTATAAGAGCTGATCCACCGT
Found at i:61236077 original size:40 final size:40
Alignment explanation
Indices: 61235881--61236069 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
61235871 GAAGCACACT
*
61235881 AAACAGAAGCTTATAAAAGTTGATCCAACCGTAACACGCC
1 AAACAGAAGCTCATAAAAGTTGATCCAACCGTAACACGCC
* * * * *
61235921 AAACAGAAGCTCATAAGAGCTGATCCAACCG-AAAAGTGCA
1 AAACAGAAGCTCATAAAAGTTGATCCAACCGTAACA-CGCC
* *
61235961 AAACAGATGCTCATAAGAGTTGATCCAACCGTAACACGCC
1 AAACAGAAGCTCATAAAAGTTGATCCAACCGTAACACGCC
* * *
61236001 AAATAAAAGCTCATAAAAGTTGATCCAATCGTAACACGCC
1 AAACAGAAGCTCATAAAAGTTGATCCAACCGTAACACGCC
* *
61236041 AAATAGAAGCTCGTAAAAGTTGATCCAAC
1 AAACAGAAGCTCATAAAAGTTGATCCAAC
61236070 TGGAACACAG
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 122 0.95
41 3 0.02
ACGTcount: A:0.43, C:0.23, G:0.16, T:0.17
Consensus pattern (40 bp):
AAACAGAAGCTCATAAAAGTTGATCCAACCGTAACACGCC
Found at i:61243271 original size:9 final size:9
Alignment explanation
Indices: 61243242--61243273 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
61243232 TTTCTGTCAG
61243242 TTTCATATT
1 TTTCATATT
*
61243251 TTCCATATT
1 TTTCATATT
61243260 TTTCATATT
1 TTTCATATT
61243269 TTTCA
1 TTTCA
61243274 CATCCCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTCATATT
Found at i:61245743 original size:46 final size:46
Alignment explanation
Indices: 61245693--61245868 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61245683 TGGTTGAGCA
61245693 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61245739 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61245784 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61245832 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61245869 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61245849 original size:93 final size:93
Alignment explanation
Indices: 61245690--61245861 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61245680 GGATGGTTGA
* *
61245690 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61245755 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61245783 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61245848 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61245862 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61253354 original size:46 final size:46
Alignment explanation
Indices: 61253304--61253479 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61253294 TGGTTGAGCA
61253304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61253350 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61253395 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61253443 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61253480 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61253460 original size:93 final size:93
Alignment explanation
Indices: 61253301--61253472 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61253291 GGATGGTTGA
* *
61253301 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61253366 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61253394 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61253459 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61253473 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61257296 original size:40 final size:40
Alignment explanation
Indices: 61257241--61257352 Score: 167
Period size: 39 Copynumber: 2.9 Consensus size: 40
61257231 TTATTTGATG
61257241 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
61257281 TGGAATTGTATCCGGGCTTAAAGA-CCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
61257320 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
61257353 GTGCTAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
38 8 0.12
39 35 0.52
40 24 0.36
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:61266436 original size:27 final size:26
Alignment explanation
Indices: 61266401--61266494 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
61266391 GGGCATATTC
*
61266401 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
* **
61266428 GTCACTTTATCCTATAGGGGCTTTATA
1 GTCACTTTA-CCTACAGGGGCTTTACG
61266455 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
61266482 GTCTTTTTACCTA
1 GTCACTTTACCTA
61266495 TTAGGGGTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.07
27 48 0.87
28 3 0.05
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:61266500 original size:54 final size:53
Alignment explanation
Indices: 61266401--61266522 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 53
61266391 GGGCATATTC
*
61266401 GTCATTTTACCATACAGGGGTATTACGGTCACTTTATCCTATAGGGGCT-TTATA
1 GTCA-TTTACCCTACAGGGGTATTACGGTCACTTTATCCTATAGGGG-TATTATA
** *
61266455 GTCACTTTACCCTACAGGGGCT-TTACGGTCTTTTTA-CCTATTAGGGGTATTTTA
1 GTCA-TTTACCCTACAGGGG-TATTACGGTCACTTTATCCTA-TAGGGGTATTATA
61266509 GTCATTTCACCCTA
1 GTCATTT-ACCCTA
61266523 TAAGGGTGTT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
53 8 0.14
54 50 0.85
55 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (53 bp):
GTCATTTACCCTACAGGGGTATTACGGTCACTTTATCCTATAGGGGTATTATA
Found at i:61266576 original size:27 final size:27
Alignment explanation
Indices: 61266546--61266802 Score: 164
Period size: 27 Copynumber: 9.4 Consensus size: 27
61266536 GTAAATCTAC
* *
61266546 AAACCAAGGGTATTTTAGTAGTTTTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
* * *
61266573 AAACTAATGGTATTTCT-ATAATTTT-T
1 AAACCAAGGGTATTT-TGGTAATTTTGT
*
61266599 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TGGTAATTTTGT
* **
61266629 AAATC-AGGTGTATTTTGGTAATTTTAC
1 AAACCAAGG-GTATTTTGGTAATTTTGT
** * ***
61266656 AAATTAAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTGGTAATTTTGT
**
61266683 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTGGTAATTTTGT
* *
61266710 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
*
61266737 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
* * *** *
61266764 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
* *
61266791 AAATCGAGGGTA
1 AAACCAAGGGTA
61266803 AAACGGTAAT
Statistics
Matches: 189, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.04
27 152 0.80
28 11 0.06
29 18 0.10
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTGGTAATTTTGT
Found at i:61266696 original size:54 final size:53
Alignment explanation
Indices: 61266525--61266761 Score: 215
Period size: 54 Copynumber: 4.4 Consensus size: 53
61266515 TCACCCTATA
* * * * ** * *
61266525 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAGTTTTGTAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC-C
* * * * * *
61266579 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATC
1 AGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAACC
* ***
61266634 AGGTGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACC
1 AGG-GTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACC
* *
61266688 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACC
1 AG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACC
*
61266742 AAGGGTATTTTAGTAATTTT
1 -AGGGTATTTTGGTAATTTT
61266762 GTAAATCGAG
Statistics
Matches: 147, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
54 94 0.64
55 22 0.15
56 31 0.21
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACC
Found at i:61266746 original size:81 final size:81
Alignment explanation
Indices: 61266524--61266760 Score: 212
Period size: 81 Copynumber: 2.9 Consensus size: 81
61266514 TTCACCCTAT
* * * * * * * *
61266524 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAGTTTTGTAAACTAATGGTATTTC
1 AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTC
* *
61266589 TA-TAATTTTTAGAAAGTC
66 -AGTAA-TTTCACAAAG-C
** * ** *
61266607 AAGGGTATTTCT-GTAATTTTGTAAA-TCAGGTGTATTTTGGTAATTTTACAAATTAAGGGTATT
1 AAGGGTATTT-TGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATT
*
61266670 TCGGTAATTTCACAAA-C
64 TCAGTAATTTCACAAAGC
* *
61266687 CAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 AAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTT
*
61266752 TAGTAATTT
65 CAGTAATTT
61266761 TGTAAATCGA
Statistics
Matches: 121, Mismatches: 27, Indels: 14
0.75 0.17 0.09
Matches are distributed among these distances:
80 4 0.03
81 57 0.47
82 8 0.07
83 51 0.42
84 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTC
AGTAATTTCACAAAGC
Found at i:61266775 original size:54 final size:53
Alignment explanation
Indices: 61266525--61266802 Score: 202
Period size: 54 Copynumber: 5.1 Consensus size: 53
61266515 TCACCCTATA
* * * * * * * *
61266525 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAGTTTTGTAAACTA
1 AGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGTAAAC-C
* * *
61266579 ATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAATC
1 AGGGTATTT-TAGTAA-TTTTACAAA-TCAAGGGTATTT-TGGTAATTTTGTAAACC
* * * ***
61266634 AGGTGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACC
1 AGG-GTATTTTAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGTAAACC
* *
61266688 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACC
1 AG-GGTATTTTAGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTGTAAACC
** * *** * *
61266742 AAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCG
1 -AGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGTAAA-CC
61266797 AGGGTA
1 AGGGTA
61266803 AAACGGTAAT
Statistics
Matches: 177, Mismatches: 35, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
54 121 0.68
55 23 0.13
56 32 0.18
57 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGTAAACC
Found at i:61266802 original size:81 final size:80
Alignment explanation
Indices: 61266726--61266929 Score: 264
Period size: 81 Copynumber: 2.5 Consensus size: 80
61266716 GGGGTATTTT
* * * *
61266726 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGT
1 GGTAATTCTGTAAATCAAGGGTATTTT-GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGT
61266791 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * ** * *
61266807 GGTAATTCTATAAATTAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTCTGTAAATCAAGGGT-ATTTTGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGT
*
61266872 AAATCGAAGGTAAAAC
65 AAATCGAGGGTAAAAC
* *
61266888 GGTAATTCTGTAAATCGAGGGTACTTTTGTAATTTTACAAAT
1 GGTAATTCTGTAAATCAAGGGTA-TTTTGTAATTTTATAAAT
61266930 TAAGGACATT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.01
81 99 0.97
82 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (80 bp):
GGTAATTCTGTAAATCAAGGGTATTTTGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAAC
Found at i:61266803 original size:27 final size:27
Alignment explanation
Indices: 61266754--61266910 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
61266744 GGGTATTTTA
* *
61266754 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
61266781 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
61266808 GTAATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
61266835 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
61266862 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
61266889 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
61266911 CTTTTGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:61270199 original size:47 final size:47
Alignment explanation
Indices: 61270139--61270260 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
61270129 GGATTGGCAC
*
61270139 TAAGAAAAGGATACCATGTAAGACCATGTTTGGAGCATGGCATTTGG
1 TAAGAAAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
61270186 TAAGACAAGGATACCATGAAAGACCATGTTTGGAACATGGCATTTTG
1 TAAGAAAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
61270233 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGAAAAGGATACCATGTAAGACCATG
61270261 ATGGCATTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGAAAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:61270337 original size:55 final size:54
Alignment explanation
Indices: 61270261--61270426 Score: 201
Period size: 55 Copynumber: 3.1 Consensus size: 54
61270251 TAAGACCATG
* * * *
61270261 ATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGAC
1 ATGGCATTGATGAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
* ** * * *
61270315 ATGGAATTGATGAGTTACTATAAAGTAAAGG-TCCCACGTAAGACCATGCCAAGGC
1 ATGGCATTGATGAGTT-CTAT-AAGGCAAGGATACCACGTAAGACCATGTCAAGAC
*
61270370 ATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
1 ATGGCATTGATGAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
61270423 ATGG
1 ATGG
61270427 TAATGGTAAG
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
52 7 0.08
53 27 0.29
54 15 0.16
55 36 0.39
56 7 0.08
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
ATGGCATTGATGAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
Found at i:61270440 original size:53 final size:53
Alignment explanation
Indices: 61270271--61270439 Score: 171
Period size: 53 Copynumber: 3.1 Consensus size: 53
61270261 ATGGCATTGA
* * * *
61270271 TAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGA
1 TAAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAA-TGG
* ** * * * *
61270325 TGAGTTACTATAAAGTAAAGG-TCCCACGTAAGACCATGCCAAGGCATGGCATTGG
1 TAAGTT-CTAT-AAGGCAAGGATACCACGTAAGACCATGTCAAGACATGG-AATGG
*
61270380 TGAGTTC-ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGTAATGG
1 TAAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGG-AATGG
61270433 TAAGTTC
1 TAAGTTC
61270440 AAAAAGGAAA
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
52 7 0.08
53 37 0.40
54 6 0.07
55 34 0.37
56 8 0.09
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
TAAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAATGG
Found at i:61276762 original size:45 final size:46
Alignment explanation
Indices: 61276698--61277023 Score: 228
Period size: 47 Copynumber: 6.8 Consensus size: 46
61276688 ATTGACGGTT
* *
61276698 AAGGATACCGTGTAAGACCATGTCAAGAAATGGCATTGGTAAAG-C
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAAGAC
* * * * * **
61276743 AAGGATCCCGTGTAAGACCATTTCAAGACATGGCATCGGCATTGATC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAAGA-C
** ** *
61276790 AAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGGTA--AAGAC
***
61276838 AAGGATACCATGTAAGACCATGTTTGGAGCATGGCATTTGGT-AAGAC
1 AAGGATACCATGTAAGACCATGTCAAGA-CATGGCA-TTGGTAAAGAC
*** *
61276885 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT-AAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAAGAC
* ** * *
61276932 AAGGATATCATGTAAGACCATCCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG----G---TA-AAGAC
* *
61276986 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG
61277024 ATGAGTTACT
Statistics
Matches: 226, Mismatches: 37, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
45 40 0.18
46 7 0.03
47 105 0.46
48 24 0.11
49 8 0.04
50 4 0.02
52 1 0.00
54 37 0.16
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (46 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAAGAC
Found at i:61277060 original size:55 final size:54
Alignment explanation
Indices: 61276932--61277115 Score: 228
Period size: 55 Copynumber: 3.4 Consensus size: 54
61276922 TTGGTAAGAT
* * *
61276932 AAGGATATCATGTAAGACCATCCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * * *
61276986 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-C
* *
61277042 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *
61277094 AAGGATGCCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
61277116 TGGTAATGGT
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.04
53 21 0.19
54 41 0.37
55 42 0.38
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:61281108 original size:34 final size:34
Alignment explanation
Indices: 61281070--61281147 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
61281060 AGTGATAGTC
* * *
61281070 CAGTATCAGT-TAGGGCCGTAGCCCATTATAGTAT
1 CAGTATCAGTGT-GGGCCGTAGCCCAATACAGTAA
*
61281104 CAGTATCAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTATCAGTGTGGGCCGTAGCCCAATACAGTAA
*
61281138 CAGTAACAGT
1 CAGTATCAGT
61281148 AATGCAAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCGTAGCCCAATACAGTAA
Found at i:61281685 original size:17 final size:18
Alignment explanation
Indices: 61281663--61281696 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
61281653 CACCCATGTG
61281663 GGGCCCACA-AGCCCATA
1 GGGCCCACACAGCCCATA
61281680 GGGCCCACACAGCCCAT
1 GGGCCCACACAGCCCAT
61281697 TTCGGCCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.26, C:0.44, G:0.24, T:0.06
Consensus pattern (18 bp):
GGGCCCACACAGCCCATA
Found at i:61286141 original size:16 final size:15
Alignment explanation
Indices: 61286111--61286149 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
61286101 TATGCAAAGT
* *
61286111 TAATAATAATTAATA
1 TAATTATAATGAATA
61286126 TATATTATAATGAATA
1 TA-ATTATAATGAATA
61286142 TAATTATA
1 TAATTATA
61286150 TACTAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TAATTATAATGAATA
Found at i:61286151 original size:22 final size:19
Alignment explanation
Indices: 61286113--61286150 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
61286103 TGCAAAGTTA
61286113 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
61286132 ATAATGAATATAAT-TATAT
1 ATAAT-AAT-TAATATATAT
61286151 ACTAGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:61309236 original size:60 final size:60
Alignment explanation
Indices: 61309120--61309237 Score: 136
Period size: 60 Copynumber: 2.0 Consensus size: 60
61309110 GTCTGGACAT
* * *
61309120 TTACTGGGCCGAAGCCTTTTGTATAACGGTTACTGGGCTGGAGCCTTTTCATAAATCAAA
1 TTACTGGGCCGAAGCCTTTTGTATAACGGTTACTGGCCTAGAGCCATTTCATAAATCAAA
*
61309180 TTACTGGGCCGAAGCCTTTACTGTA-AACGG-TA-TGGCCTATAGGCCCATTTCA-AAATCA
1 TTACTGGGCCGAAGCCTTT--TGTATAACGGTTACTGGCCTAGA-G-CCATTTCATAAATCA
61309238 CATGAAATAC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
59 6 0.12
60 28 0.56
61 12 0.24
62 4 0.08
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (60 bp):
TTACTGGGCCGAAGCCTTTTGTATAACGGTTACTGGCCTAGAGCCATTTCATAAATCAAA
Found at i:61309456 original size:25 final size:24
Alignment explanation
Indices: 61309412--61309488 Score: 91
Period size: 25 Copynumber: 3.1 Consensus size: 24
61309402 GCCTAGCCTC
* *
61309412 TTTTAATAACTGGGGTAAAGCCCT
1 TTTTGATAACTGGGGCAAAGCCCT
61309436 TTTTGATAACCTGGGGCAAAGCCCT
1 TTTTGATAA-CTGGGGCAAAGCCCT
* * *
61309461 TTTCGGTAAATTGGGGCAAAGCCCT
1 TTTTGAT-AACTGGGGCAAAGCCCT
61309486 TTT
1 TTT
61309489 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 8 0.17
25 36 0.78
26 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.32
Consensus pattern (24 bp):
TTTTGATAACTGGGGCAAAGCCCT
Found at i:61309723 original size:27 final size:27
Alignment explanation
Indices: 61309693--61309855 Score: 236
Period size: 27 Copynumber: 6.0 Consensus size: 27
61309683 GGGGCAAAAT
* *
61309693 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
61309720 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61309747 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
61309774 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61309801 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
61309828 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
61309855 G
1 G
61309856 ATATTTTACA
Statistics
Matches: 126, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:61309904 original size:27 final size:26
Alignment explanation
Indices: 61309844--61309996 Score: 67
Period size: 27 Copynumber: 5.7 Consensus size: 26
61309834 TCTACCTTAC
*
61309844 AGGGGTATTTCGAT-ATTTTACAAAT
1 AGGGGTATTTCGATAATTTCACAAAT
* * *
61309869 CGAGAGTATTTCGATAATTTCACAGATT
1 AG-GGGTATTTCGATAATTTCACA-AAT
* * * **
61309897 AGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTCGATAATTTCACAA-AT
* * ** *
61309924 AGGGGTATTTTGGTAATTTTTCAAGCT
1 AGGGGTATTTCGATAATTTCACAA-AT
* * *
61309951 AGGGGTATTT-TAGTAATTTTACAAACC
1 AGGGGTATTTCGA-TAATTTCACAAA-T
* *
61309978 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTCGATAATTT
61309997 TACTGATCAA
Statistics
Matches: 101, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.01
26 12 0.12
27 85 0.84
28 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (26 bp):
AGGGGTATTTCGATAATTTCACAAAT
Found at i:61309933 original size:54 final size:54
Alignment explanation
Indices: 61309844--61310050 Score: 197
Period size: 54 Copynumber: 3.9 Consensus size: 54
61309834 TCTACCTTAC
* * * * * *
61309844 AGGGGTATTTCGAT-ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAGATT
1 AGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTCACAGATT
* *
61309897 AGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTTCA-AG-CT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAA--TTTCACAGATT
* * * *
61309951 AGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAGATT
* ** ** *
61310005 AAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
61310051 TGTAAATCGA
Statistics
Matches: 127, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.03
53 13 0.10
54 102 0.80
55 3 0.02
56 5 0.04
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAGATT
Found at i:61309997 original size:27 final size:27
Alignment explanation
Indices: 61309897--61310051 Score: 184
Period size: 27 Copynumber: 5.7 Consensus size: 27
61309887 TTCACAGATT
*
61309897 AGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
61309924 AGGGGTATTTTGGTAATTTTTCAAGCT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
61309951 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** *
61309978 AGGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAACC
* **
61310005 AAGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** *
61310032 AATGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
61310052 GTAAATCGAG
Statistics
Matches: 110, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.43
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:61310065 original size:81 final size:81
Alignment explanation
Indices: 61309897--61310051 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
61309887 TTCACAGATT
* * * *
61309897 AGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTTCAAGCTAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTTCAAACCAAGGGTATTTT
61309962 AGTAATTTTACAAACC
66 AGTAATTTTACAAACC
* * *
61309978 AGGGGTATTTTGGTAATTTTAC-TGATCAAGGGTATTTTGGTAATTTTGT-AAACCAATGGTATT
1 AGGGGTATTTTGGTAATTTTACAAG-CCAAGGGTATTTTGGTAATTTT-TCAAACCAAGGGTATT
61310041 TTAGTAATTTT
64 TTAGTAATTTT
61310052 GTAAATCGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.02
81 63 0.97
82 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.43
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTTCAAACCAAGGGTATTTT
AGTAATTTTACAAACC
Found at i:61310238 original size:27 final size:27
Alignment explanation
Indices: 61310044--61310227 Score: 287
Period size: 27 Copynumber: 6.8 Consensus size: 27
61310034 TGGTATTTTA
* * *
61310044 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
61310071 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
61310098 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
61310125 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * **
61310152 GTAATTCTGTAAATCGAGGATAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
61310179 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
61310206 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
61310228 CTTTGGTAAT
Statistics
Matches: 143, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:61310246 original size:27 final size:27
Alignment explanation
Indices: 61310054--61310251 Score: 198
Period size: 27 Copynumber: 7.3 Consensus size: 27
61310044 GTAATTTTGT
* **
61310054 AAATCGAGGGTAAAACGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTCC
* **
61310081 AAATCGAGGGTAAAATAGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTCC
**
61310108 AAATCGAGGGTAAAATGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTCC
**
61310135 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAATCGAGGGTAAAATGGTAATTCTCC
* ** **
61310162 AAATCGAGGATAAAACAGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTCC
**
61310189 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAATCGAGGGTAAAATGGTAATTCTCC
*** *
61310216 AAATCGAGGGTACTTTGGTAATTTTCC
1 AAATCGAGGGTAAAATGGTAATTCTCC
*
61310243 AAATTGAGG
1 AAATCGAGG
61310252 ATAATTCAGT
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AAATCGAGGGTAAAATGGTAATTCTCC
Found at i:61310262 original size:81 final size:81
Alignment explanation
Indices: 61310044--61310265 Score: 291
Period size: 81 Copynumber: 2.7 Consensus size: 81
61310034 TGGTATTTTA
* * * ** * *
61310044 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGATAAAACAGTAATTCTATA
61310109 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
**
61310125 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGATAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGATAAAACAGTAATTCTATA
61310190 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *** * * **
61310206 GTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTCCAAATTGAGGATAATTCAGTAATT
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGATAAAACAGTAATT
61310266 TGGTAAACTA
Statistics
Matches: 125, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 125 1.00
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.32
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGATAAAACAGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:61312494 original size:25 final size:26
Alignment explanation
Indices: 61312460--61312529 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
61312450 CTCTTTTAAT
* *
61312460 AACTAGGGCAAAGCCCTTTTTGA-TA
1 AACTGGGGCAAAGCCCTTTTTCAGTA
61312485 AACTGGGGCAAAGCCC-TTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTCAGTA
* *
61312510 AACTGGGGGAAAGTCCTTTT
1 AACTGGGGCAAAGCCCTTTT
61312530 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 5 0.13
25 31 0.79
26 3 0.08
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCAGTA
Found at i:61312764 original size:27 final size:27
Alignment explanation
Indices: 61312734--61312869 Score: 218
Period size: 27 Copynumber: 5.0 Consensus size: 27
61312724 GGGGCAAAAT
* * * *
61312734 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61312761 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61312788 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61312815 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61312842 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61312869 G
1 G
61312870 ATATTTTACA
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:61312919 original size:27 final size:27
Alignment explanation
Indices: 61312859--61312986 Score: 102
Period size: 27 Copynumber: 4.8 Consensus size: 27
61312849 CTACCCTACA
61312859 AGGG-TATTTCGAT-ATTTTACAAATC
1 AGGGATATTTCGATAATTTTACAAATC
* * *
61312884 -GAGAGTATTTCGATAATTTCACAGATC
1 AGGGA-TATTTCGATAATTTTACAAATC
* * *
61312911 AGGGATATTTTGGTAATTTTACAAACC
1 AGGGATATTTCGATAATTTTACAAATC
* * *
61312938 AGGGGTATTT-TAGTAATTTTACAAACC
1 AGGGATATTTCGA-TAATTTTACAAATC
* * *
61312965 AGGGGTATTTTGGTAATTTTAC
1 AGGGATATTTCGATAATTTTAC
61312987 TGATCGATGG
Statistics
Matches: 83, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
24 2 0.02
26 9 0.11
27 69 0.83
28 3 0.04
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGATATTTCGATAATTTTACAAATC
Found at i:61313025 original size:27 final size:27
Alignment explanation
Indices: 61312911--61313052 Score: 133
Period size: 27 Copynumber: 5.2 Consensus size: 27
61312901 TTCACAGATC
*
61312911 AGGGATATTTTGGTAATTTTACAAACCA
1 AGGG-TATTTTGGTAATTTTATAAACCA
* * *
61312939 GGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * * *
61312966 GGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTA-TAAACCA
* *
61312993 ATGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * * *
61313020 AGGGTATTTTCGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAACCA
61313047 AGGGTA
1 AGGGTA
61313053 AAACTGTAAT
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 91 0.96
28 3 0.03
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACCA
Found at i:61313047 original size:54 final size:54
Alignment explanation
Indices: 61312857--61313052 Score: 152
Period size: 54 Copynumber: 3.6 Consensus size: 54
61312847 TTCTACCCTA
* * * * * *
61312857 CAAGGGTA-TTTCG-ATATTTTACAAATCGAGAGTA-TTTCGATAATTTCACAGAT
1 CAAGGGTATTTTCGTA-ATTTTACTAATCGAGGGTATTTTAG-TAATTTTACAAAC
* * *
61312910 C-AGGGATATTTTGGTAATTTTAC-AAACCAGGGGTATTTTAGTAATTTTACAAAC
1 CAAGGG-TATTTTCGTAATTTTACTAATCGA-GGGTATTTTAGTAATTTTACAAAC
* * * * * **
61312964 CAGGGGTATTTTGGTAATTTTACTGATCGATGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTCGTAATTTTACTAATCGAGGGTATTTTAGTAATTTTACAAAC
*
61313018 CAAGGGTATTTTCGTAATTTT-GTAAATCGAGGGTA
1 CAAGGGTATTTTCGTAATTTTACT-AATCGAGGGTA
61313053 AAACTGTAAT
Statistics
Matches: 114, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
52 4 0.04
53 8 0.07
54 91 0.80
55 11 0.10
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTCGTAATTTTACTAATCGAGGGTATTTTAGTAATTTTACAAAC
Found at i:61313052 original size:81 final size:81
Alignment explanation
Indices: 61312857--61313052 Score: 220
Period size: 81 Copynumber: 2.4 Consensus size: 81
61312847 TTCTACCCTA
*
61312857 CAAGGGTA-TTTCG-ATATTTTACAAATCGAGAGTATTTCGATAATTTCACAGATCAGGGATATT
1 CAAGGGTATTTTCGTA-ATTTTACAAATCGAGGGTATTTCGATAATTTCACAGATCAGGGATATT
61312920 TTGGTAATTTTACAAAC
65 TTGGTAATTTTACAAAC
* * * * * * * *
61312937 CAGGGGTATTTTAGTAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACTGATCGATGG-TAT
1 CAAGGGTATTTTCGTAATTTTACAAATCGA-GGGTATTTCGATAATTTCACAGATC-AGGGATAT
**
61313000 TTTGGTAATTTTGTAAAC
64 TTTGGTAATTTTACAAAC
**
61313018 CAAGGGTATTTTCGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTCGTAATTTTACAAATCGAGGGTA
61313053 AAACTGTAAT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
80 9 0.09
81 80 0.84
82 6 0.06
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTCGTAATTTTACAAATCGAGGGTATTTCGATAATTTCACAGATCAGGGATATTT
TGGTAATTTTACAAAC
Found at i:61313061 original size:27 final size:26
Alignment explanation
Indices: 61313031--61313214 Score: 197
Period size: 27 Copynumber: 6.8 Consensus size: 26
61313021 GGGTATTTTC
* *
61313031 GTAATTTTGTAAATCGAGGGTAAAACT
1 GTAATTCTATAAATCGAGGGTAAAA-T
61313058 GTAATTCTATAAATCGAGGGTAAAAT
1 GTAATTCTATAAATCGAGGGTAAAAT
* * **
61313084 GATAATTTTATAAATTGAAAGTAAAAT
1 G-TAATTCTATAAATCGAGGGTAAAAT
* *
61313111 GGTAATTCTATAAATCAAGGGTAAAACG
1 -GTAATTCTATAAATCGAGGGTAAAA-T
**
61313139 GTAATTCTATAAATCGAGAATAAAAT
1 GTAATTCTATAAATCGAGGGTAAAAT
* *
61313165 AGTAATTTTATAAATCGAGGGTAAAACG
1 -GTAATTCTATAAATCGAGGGTAAAA-T
*
61313193 GTAATTCTATAAATCAAGGGTA
1 GTAATTCTATAAATCGAGGGTA
61313215 CTTTGGTAAT
Statistics
Matches: 130, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.02
27 127 0.98
28 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (26 bp):
GTAATTCTATAAATCGAGGGTAAAAT
Found at i:61313090 original size:81 final size:81
Alignment explanation
Indices: 61313004--61313214 Score: 239
Period size: 81 Copynumber: 2.6 Consensus size: 81
61312994 TGGTATTTTG
* * *** * * * *
61313004 GTAATTTTGTAAACCAAGGGTATTTTCGTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTATA
1 GTAATTTTATAAATCAAGGGTAAAATCGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
**
61313069 AATCGAGGGTAAAAT-
66 AATCGAGAATAAAATA
* * *
61313084 GATAATTTTATAAATTGAA-AGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA
1 G-TAATTTTATAAA-TCAAGGGTAAAATCGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA
61313148 TAAATCGAGAATAAAATA
64 TAAATCGAGAATAAAATA
*
61313166 GTAATTTTATAAATCGAGGGTAAAA-CGGTAATTCTATAAATCAAGGGTA
1 GTAATTTTATAAATCAAGGGTAAAATC-GTAATTCTATAAATCAAGGGTA
61313215 CTTTGGTAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
80 3 0.03
81 102 0.94
82 3 0.03
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (81 bp):
GTAATTTTATAAATCAAGGGTAAAATCGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
AATCGAGAATAAAATA
Found at i:61313225 original size:81 final size:81
Alignment explanation
Indices: 61313031--61313214 Score: 262
Period size: 81 Copynumber: 2.3 Consensus size: 81
61313021 GGGTATTTTC
* * * * **
61313031 GTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTATAAATCGAGGGTAAAATGATAATTTTATA
1 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGAATAAAATGATAATTTTATA
* *
61313096 AATTGAAAGTAAAATG
66 AATCGAAAGTAAAACG
61313112 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGAATAAAAT-AGTAATTTTAT
1 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGAATAAAATGA-TAATTTTAT
**
61313176 AAATCGAGGGTAAAACG
65 AAATCGAAAGTAAAACG
61313193 GTAATTCTATAAATCAAGGGTA
1 GTAATTCTATAAATCAAGGGTA
61313215 CTTTGGTAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 91 0.99
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (81 bp):
GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGAATAAAATGATAATTTTATA
AATCGAAAGTAAAACG
Found at i:61317131 original size:35 final size:35
Alignment explanation
Indices: 61317092--61317159 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
61317082 TTTCTCTCTG
*
61317092 TAAAAAATTTATATGACTATGAGATTTGTTTCTAC
1 TAAAAAATTTATATGACTATGAGATTTGATTCTAC
61317127 TAAAAAATTTATATGACTATGAGATTTGATTCT
1 TAAAAAATTTATATGACTATGAGATTTGATTCT
61317160 GAGGATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (35 bp):
TAAAAAATTTATATGACTATGAGATTTGATTCTAC
Found at i:61318235 original size:93 final size:93
Alignment explanation
Indices: 61318076--61318247 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61318066 CGCCCATAAG
* *
61318076 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61318141 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
61318169 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61318234 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61318248 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61318244 original size:46 final size:46
Alignment explanation
Indices: 61318069--61318244 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61318059 TGTAACCCGC
* * *
61318069 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
61318115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61318165 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
61318208 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61318245 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61325404 original size:19 final size:20
Alignment explanation
Indices: 61325380--61325417 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
61325370 TGGTACACCA
61325380 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
61325399 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
61325418 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:61325758 original size:93 final size:93
Alignment explanation
Indices: 61325647--61325817 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
61325637 GCCCCTAAGT
* * *
61325647 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
61325712 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
61325740 GAACTCGGACTCAACTCAACGAGTTTAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
61325805 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61325818 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61325807 original size:46 final size:46
Alignment explanation
Indices: 61325642--61325811 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
61325632 AACCCGCCCC
* * * * *
61325642 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* * * *
61325688 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCA
* * *
61325736 TCA-CGAACTCGGACTCAACTCAACGAGTTTAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
61325781 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
61325812 GGATGCTCAA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 53 0.53
47 25 0.25
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:61326271 original size:30 final size:30
Alignment explanation
Indices: 61326237--61326296 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
61326227 ATTTAATACG
61326237 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
61326267 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
61326297 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:61334672 original size:43 final size:43
Alignment explanation
Indices: 61334624--61334715 Score: 118
Period size: 43 Copynumber: 2.1 Consensus size: 43
61334614 AGTAATACCA
* *
61334624 TGGCATCGATATGTGATTCCGA-GTAAGACC-CTGTCTGGGACAG-
1 TGGCATCGATATGTGACTAC-ATGTAAGACCAC-GTCTGGGAC-GT
61334667 TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
1 TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
61334710 TGGCAT
1 TGGCAT
61334716 TGTACGATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
42 2 0.05
43 41 0.93
44 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
Found at i:61336324 original size:43 final size:43
Alignment explanation
Indices: 61336274--61336365 Score: 118
Period size: 43 Copynumber: 2.1 Consensus size: 43
61336264 AGTAAGACCA
* *
61336274 TGGCATCGATATGTGATTCCGA-GTAAGACC-CTGTCTGGGACAG-
1 TGGCATCGATATGTGACTAC-ATGTAAGACCAC-GTCTGGGAC-GT
61336317 TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
1 TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
61336360 TGGCAT
1 TGGCAT
61336366 TGTACAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
42 2 0.05
43 41 0.93
44 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
Found at i:61338130 original size:42 final size:46
Alignment explanation
Indices: 61338067--61338231 Score: 144
Period size: 49 Copynumber: 3.6 Consensus size: 46
61338057 CTTCGTTTAC
** * * *
61338067 TCGATGTCATAGTTCAACTATGGTCTTATAC-AT-C-T-TCATATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
61338109 TCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC--AAT-ACATATCACATA
* * *
61338158 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATAACATATCTCA-C
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC-AAT-ACATATCACATA
* * *
61338205 T-GATGCCATATCCCAGATATGGTCTTA
1 TCGATGTCATAGCCCAGCTATGGTCTTA
61338232 TACAGTAGCA
Statistics
Matches: 104, Mismatches: 12, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
42 27 0.26
45 2 0.02
46 24 0.23
47 2 0.02
48 13 0.12
49 36 0.35
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (46 bp):
TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
Found at i:61338170 original size:49 final size:48
Alignment explanation
Indices: 61338108--61338278 Score: 179
Period size: 47 Copynumber: 3.6 Consensus size: 48
61338098 ATCTTCATAT
* *
61338108 ATCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACA
1 ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
* * *
61338156 TATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATAACATATCTCA
1 -ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
* * * * *
61338204 CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-
1 ATCGATGCCATAGCCCAGATATGGTCTTACAC-GTAATCACATATCACA
* * *
61338250 ACCAATGCCATATCCCAGATATGGTCTTA
1 ATCGATGCCATAGCCCAGATATGGTCTTA
61338279 TACAGAAATC
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 26 0.25
47 35 0.33
48 12 0.11
49 32 0.30
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
Done.