Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 181 of 311
Found at i:61877337 original size:15 final size:16
Alignment explanation
Indices: 61877308--61877341 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
61877298 TAAGCTAAAG
*
61877308 AAAGTAAATGTAATGC
1 AAAGTAAATGAAATGC
61877324 AAAGT-AATGAAATGC
1 AAAGTAAATGAAATGC
61877339 AAA
1 AAA
61877342 CAAAAGGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.21
Consensus pattern (16 bp):
AAAGTAAATGAAATGC
Found at i:61879097 original size:60 final size:59
Alignment explanation
Indices: 61878977--61879113 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 59
61878967 CAGTGTTAAC
* *
61878977 TGGGCCTTAGCCCATATCAATATTAATATAGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATATAGGCCATAGCCCATTACAG-ATCAGAGTATAT
* * * *
61879038 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATATAGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
**
61879098 TGGGCCTTTCCCATAT
1 TGGGCCTAGCCCATAT
61879114 TAACATAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.06
60 50 0.77
61 11 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATATAGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:61879772 original size:8 final size:8
Alignment explanation
Indices: 61879763--61879816 Score: 81
Period size: 8 Copynumber: 6.8 Consensus size: 8
61879753 ACAAATGCCA
*
61879763 GCTTTTCA
1 GCTTTTCG
61879771 GCTTTTCG
1 GCTTTTCG
*
61879779 GCTTTTTG
1 GCTTTTCG
61879787 GCTTTTCG
1 GCTTTTCG
*
61879795 GCTTTTCA
1 GCTTTTCG
61879803 GCTTTTCG
1 GCTTTTCG
61879811 GCTTTT
1 GCTTTT
61879817 GCTGATCTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.04, C:0.22, G:0.20, T:0.54
Consensus pattern (8 bp):
GCTTTTCG
Found at i:61879784 original size:16 final size:16
Alignment explanation
Indices: 61879763--61879816 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
61879753 ACAAATGCCA
61879763 GCTTTTCAGCTTTTCG
1 GCTTTTCAGCTTTTCG
**
61879779 GCTTTTTGGCTTTTCG
1 GCTTTTCAGCTTTTCG
61879795 GCTTTTCAGCTTTTCG
1 GCTTTTCAGCTTTTCG
61879811 GCTTTT
1 GCTTTT
61879817 GCTGATCTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.04, C:0.22, G:0.20, T:0.54
Consensus pattern (16 bp):
GCTTTTCAGCTTTTCG
Found at i:61880521 original size:17 final size:17
Alignment explanation
Indices: 61880501--61880534 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
61880491 AGAGAAGGAA
61880501 AGAA-AAGAAGAAAAAAT
1 AGAAGAAGAA-AAAAAAT
61880518 AGAAGAAGAAAAAAAAT
1 AGAAGAAGAAAAAAAAT
61880535 GAATCCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (17 bp):
AGAAGAAGAAAAAAAAT
Found at i:61882713 original size:102 final size:103
Alignment explanation
Indices: 61882471--61882734 Score: 399
Period size: 102 Copynumber: 2.6 Consensus size: 103
61882461 TTGTACATAA
** * *
61882471 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTC
* *
61882536 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAA-GTAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
61882575 AGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
61882639 CTGAAA-TAAAAAGGGGTTGCTATGTGCTGATTCCCCC-
65 CTGAAAGTAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
* * *
61882676 ATGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 A-GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
61882735 AATAACGGTT
Statistics
Matches: 148, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
101 1 0.01
102 81 0.55
103 2 0.01
104 64 0.43
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTC
TGAAAGTAAAAAGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:61893281 original size:142 final size:142
Alignment explanation
Indices: 61893114--61893396 Score: 539
Period size: 142 Copynumber: 2.0 Consensus size: 142
61893104 GGCTGCTATA
* *
61893114 GTTATGAAAATTATTTGGCTTGGCTTAAAGTGCAAGGAAATTGAATAAAAATCATTTTACGAGCC
1 GTTATGAAAATTATTTGGCTTGGCTTAAAGTGCAAAGAAATTGAATAAAAAACATTTTACGAGCC
*
61893179 TAGGGGCCAATGTGTAAATAAGTGAAAGTTTAGGGGTAAAAATGCAAATTTGTAAAAGTATGATT
66 TAGGGGCCAATGTGTAAATAAGTGAAAGGTTAGGGGTAAAAATGCAAATTTGTAAAAGTATGATT
61893244 TTTGAGTCAATG
131 TTTGAGTCAATG
61893256 GTTATGAAAATTATTTGGCTTGGCTTAAAGTGCAAAGAAATTGAATAAAAAACATTTTACGAGCC
1 GTTATGAAAATTATTTGGCTTGGCTTAAAGTGCAAAGAAATTGAATAAAAAACATTTTACGAGCC
61893321 TAGGGGCCAATGTGTAAATAAGTGAAAGGTTAGGGGTAAAAATGCAAATTTGTAAAAGTATGATT
66 TAGGGGCCAATGTGTAAATAAGTGAAAGGTTAGGGGTAAAAATGCAAATTTGTAAAAGTATGATT
61893386 TTTGAGTCAAT
131 TTTGAGTCAAT
61893397 TTGAATAATG
Statistics
Matches: 138, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
142 138 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (142 bp):
GTTATGAAAATTATTTGGCTTGGCTTAAAGTGCAAAGAAATTGAATAAAAAACATTTTACGAGCC
TAGGGGCCAATGTGTAAATAAGTGAAAGGTTAGGGGTAAAAATGCAAATTTGTAAAAGTATGATT
TTTGAGTCAATG
Found at i:61895398 original size:37 final size:37
Alignment explanation
Indices: 61895348--61895426 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
61895338 TTATTACGAA
* *
61895348 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
61895385 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
61895422 GTCTT
1 GTCTT
61895427 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:61895623 original size:47 final size:47
Alignment explanation
Indices: 61895596--61895832 Score: 429
Period size: 47 Copynumber: 5.0 Consensus size: 47
61895586 CTCGGCCCCG
61895596 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
61895643 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
61895690 TCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCAC--ACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
61895739 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
61895786 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
61895833 CTATCATTTC
Statistics
Matches: 184, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 139 0.76
49 45 0.24
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:61895729 original size:96 final size:94
Alignment explanation
Indices: 61895545--61895832 Score: 432
Period size: 96 Copynumber: 3.0 Consensus size: 94
61895535 CCCTTCGGGA
** * * * * * * ***
61895545 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
61895610 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
*
61895639 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ACATATAC
61895704 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCTATTAGGC
* *
61895735 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
61895800 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
61895829 CTTA
1 CTTA
61895833 CTATCATTTC
Statistics
Matches: 177, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
94 86 0.49
96 91 0.51
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCTATTAGGC
Found at i:61898584 original size:48 final size:48
Alignment explanation
Indices: 61898510--61898662 Score: 182
Period size: 48 Copynumber: 3.2 Consensus size: 48
61898500 TAGGGGTGTC
* * *
61898510 ACATGGCATCAGCGATGACATGTGTGCCTATGTAAGACCACGTATGGG
1 ACATGGCATCGGCGATGATATGTGTGCCTATGTAAGACCATGTATGGG
* * *
61898558 ACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTTTGGG
1 ACATGGCATCGGCGATGATATGTGTGCCTATGTAAGACCATGTATGGG
* * ** **
61898606 ACATGGCATCGACGATGGTATGTG-GATTTATGTAAGACCATGTCGGGG
1 ACATGGCATCGGCGATGATATGTGTG-CCTATGTAAGACCATGTATGGG
61898654 ACATGGCAT
1 ACATGGCAT
61898663 TGGTACTTTA
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 89 0.99
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
ACATGGCATCGGCGATGATATGTGTGCCTATGTAAGACCATGTATGGG
Found at i:61903339 original size:55 final size:54
Alignment explanation
Indices: 61903251--61903505 Score: 244
Period size: 55 Copynumber: 4.8 Consensus size: 54
61903241 ATTAGGGTTT
61903251 AAGGATACCATGTAAGACCATGCCAAGGA-ATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
61903306 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAACGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * * *
61903361 AAAGG-TCCCATGTAAGACTATGCCAAGGCATGGC-ATTGTTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
61903414 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGCAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
61903463 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
61903506 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 36 0.22
54 14 0.08
55 68 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:61903458 original size:108 final size:110
Alignment explanation
Indices: 61903258--61903458 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
61903248 TTTAAGGATA
61903258 CCATGTAAGACCATGCCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
61903323 CCATGTCAAGACATGGCATTGATAAGTTACTATAACGCAAAGGTC
66 CCATGTCAAGACATGGCAATGACAAGTTACTATAACGCAAAGGTC
* * * *
61903368 CCATGTAAGACTATGCCAAGGCATGGC-ATTGTTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGAATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
61903430 ACCATGTCGAGACATGGCAATGGCAAGTT
65 ACCATGTCAAGACATGGCAATGACAAGTT
61903459 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 6 0.07
110 25 0.30
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGACAAGTTACTATAACGCAAAGGTC
Found at i:61903718 original size:16 final size:16
Alignment explanation
Indices: 61903697--61903727 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61903687 ATAAATTTGA
61903697 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
61903713 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
61903728 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:61908090 original size:48 final size:48
Alignment explanation
Indices: 61908019--61908344 Score: 440
Period size: 48 Copynumber: 6.8 Consensus size: 48
61908009 CACCATATTA
* * *
61908019 ATGTGTGCCTGTGTAAGATCATGTCTGGGACATGGCATTGGGGATGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
61908067 ATGTGTGCCTATGTAAGACCATGTCTAGGATATAGCATCGGCGATGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
61908115 ATGTGTGCCTGTGTAAAACCATGTCTAGGACATGGCATCGGGGATGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* *
61908163 ATGTGTGCCTGTGTAAGACCATGTCTTGGACATGGCATCTGC-AGTGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGA-TGAT
*
61908211 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
61908259 ATATGTGCCTGTGTAAGACCATATCTGGGACATGGCATCGACGATGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
** * *
61908307 ATGTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
61908345 TGGTACTTTA
Statistics
Matches: 247, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
47 3 0.01
48 243 0.98
49 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (48 bp):
ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
Found at i:61916318 original size:19 final size:19
Alignment explanation
Indices: 61916294--61916330 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
61916284 GAATATATAC
*
61916294 TTTTGAAATTTTTAAAATT
1 TTTTGAAAGTTTTAAAATT
61916313 TTTTGAAAGTTTTAAAAT
1 TTTTGAAAGTTTTAAAAT
61916331 CTAAATACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TTTTGAAAGTTTTAAAATT
Found at i:61926603 original size:14 final size:14
Alignment explanation
Indices: 61926584--61926613 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
61926574 TCCTATTTCA
*
61926584 AATTAAAATTATTT
1 AATTAAAATTAATT
61926598 AATTAAAATTAATT
1 AATTAAAATTAATT
61926612 AA
1 AA
61926614 ATAATAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTAAAATTAATT
Found at i:61930061 original size:61 final size:60
Alignment explanation
Indices: 61929996--61930142 Score: 145
Period size: 60 Copynumber: 2.4 Consensus size: 60
61929986 ACACATTCTA
* * *
61929996 TCATTTT-GATCCTAAATATAAAAAATTTAA-AAAATTTAGCACTCAATGTTTGCAAAATTTG
1 TCATTTTAG-TCCTAAATAT-AAAAATTCAATAAAA-TTAGCACTCAATATTTACAAAATTTG
* * * * *
61930057 TCATTTTAGTTCTAATTCTAAAAATTCAATAAAATTGGCCCTCAATATTTACAAAATTTG
1 TCATTTTAGTCCTAAATATAAAAATTCAATAAAATTAGCACTCAATATTTACAAAATTTG
* * * *
61930117 TCAATTTAGTCTTAACTCTAAAAATT
1 TCATTTTAGTCCTAAATATAAAAATT
61930143 AAAAATATTT
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
60 53 0.74
61 18 0.25
62 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (60 bp):
TCATTTTAGTCCTAAATATAAAAATTCAATAAAATTAGCACTCAATATTTACAAAATTTG
Found at i:61945589 original size:17 final size:17
Alignment explanation
Indices: 61945567--61945602 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
61945557 CAAATTAAGT
61945567 TTATAAATGT-TATATTA
1 TTATAAAT-TCTATATTA
61945584 TTATAAATTCTATATTA
1 TTATAAATTCTATATTA
61945601 TT
1 TT
61945603 TTTGCATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.06
17 17 0.94
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TTATAAATTCTATATTA
Found at i:61945688 original size:14 final size:14
Alignment explanation
Indices: 61945669--61945702 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
61945659 CTTTTTTTAT
61945669 TATTATAAAGATTA
1 TATTATAAAGATTA
*
61945683 TATTATAAATATTA
1 TATTATAAAGATTA
61945697 TATTAT
1 TATTAT
61945703 TTTTGACCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
TATTATAAAGATTA
Found at i:61950728 original size:28 final size:28
Alignment explanation
Indices: 61950692--61950766 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
61950682 TCAAATATGG
*
61950692 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
61950720 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* * *
61950748 AACTTAGTGTCCAAAATAT
1 CACTTAGTGTACGAAATAT
61950767 CGAATGATTC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:61951207 original size:21 final size:22
Alignment explanation
Indices: 61951176--61951216 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
61951166 GAATGCATTG
*
61951176 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
61951198 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
61951217 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:61953186 original size:29 final size:29
Alignment explanation
Indices: 61953122--61953187 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
61953112 TTATCATTTA
* *
61953122 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
61953151 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
61953179 TTTACTCAA
1 TTT-CTCAA
61953188 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:61958957 original size:15 final size:15
Alignment explanation
Indices: 61958937--61959001 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
61958927 GTATCTTGGG
*
61958937 TTTCTTTGTTCTGGA
1 TTTCTTTATTCTGGA
*
61958952 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
61958967 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
61958982 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
61958996 TTTCTT
1 TTTCTT
61959002 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
14 10 0.24
15 30 0.71
16 2 0.05
ACGTcount: A:0.08, C:0.15, G:0.15, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:61958969 original size:30 final size:30
Alignment explanation
Indices: 61958933--61959001 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
61958923 TATCGTATCT
*
61958933 TGGGTTTCTTTGT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TGGATTTCTTTATTC
*
61958963 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
61958993 -GGTTTTCTT
1 TGGGTTTCTT
61959002 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.07, C:0.14, G:0.19, T:0.59
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:61965316 original size:16 final size:17
Alignment explanation
Indices: 61965290--61965321 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
61965280 AAATAAGAAA
61965290 TAATAATTATAATAATT
1 TAATAATTATAATAATT
61965307 TAATAA-TATAATAAT
1 TAATAATTATAATAAT
61965322 ATATATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATAATTATAATAATT
Found at i:61967137 original size:20 final size:20
Alignment explanation
Indices: 61967103--61967154 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
61967093 CCCATGGCCT
* *
61967103 GGCCCCACGGCCATGTCCCCA
1 GGCCACACGGGCATGT-CCCA
61967124 -GCCACACGGGCATGTCCCA
1 GGCCACACGGGCATGTCCCA
61967143 GGCCACACGGGC
1 GGCCACACGGGC
61967155 TTGTGCCCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.17, C:0.46, G:0.29, T:0.08
Consensus pattern (20 bp):
GGCCACACGGGCATGTCCCA
Found at i:61971896 original size:53 final size:55
Alignment explanation
Indices: 61971776--61971967 Score: 190
Period size: 53 Copynumber: 3.6 Consensus size: 55
61971766 AGAACAAAAT
* * *
61971776 CATGTAAGACCATGTCGAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTAC
* *
61971831 CATGTAAGACCATGCCAATG-CATGGCATTGGTGAGTT-C-ATAAGGC-AAGGCTAC
1 CATGTAAGACCATGTCAA-GACATGGCATTGGTAAGTTACTATAAGGCAAAGG-TAC
*
61971884 CATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--T-T-A---AAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGG-TAC
* * * *
61971933 CACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CATGTAAGACCATGTCAAGACATGGCATTGGTAAG
61971968 GTACCCGCGT
Statistics
Matches: 120, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
49 39 0.32
51 1 0.01
52 6 0.05
53 41 0.34
54 1 0.01
55 31 0.26
56 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (55 bp):
CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTAC
Found at i:61972180 original size:16 final size:16
Alignment explanation
Indices: 61972159--61972189 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61972149 ATAAATTTGA
61972159 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
61972175 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
61972190 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:61976111 original size:28 final size:28
Alignment explanation
Indices: 61976079--61976151 Score: 146
Period size: 28 Copynumber: 2.6 Consensus size: 28
61976069 AGATTGCTGT
61976079 GAAAGAAATGGACCAGTATGAGATTATA
1 GAAAGAAATGGACCAGTATGAGATTATA
61976107 GAAAGAAATGGACCAGTATGAGATTATA
1 GAAAGAAATGGACCAGTATGAGATTATA
61976135 GAAAGAAATGGACCAGT
1 GAAAGAAATGGACCAGT
61976152 GGCATATCGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.47, C:0.08, G:0.26, T:0.19
Consensus pattern (28 bp):
GAAAGAAATGGACCAGTATGAGATTATA
Found at i:61976856 original size:8 final size:8
Alignment explanation
Indices: 61976823--61976858 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
61976813 TAAATAAGAA
61976823 ATAATAATT
1 ATAATAA-T
61976832 ATAATAAT
1 ATAATAAT
*
61976840 TTAATAAT
1 ATAATAAT
61976848 ATAATAAT
1 ATAATAAT
61976856 ATA
1 ATA
61976859 TACGTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 18 0.72
9 7 0.28
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
ATAATAAT
Found at i:61978663 original size:20 final size:20
Alignment explanation
Indices: 61978634--61978680 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
61978624 GGCCTGGCCC
* *
61978634 CACGGCCATGTCCCCAGCCA
1 CACGGGCATGTCCCAAGCCA
61978654 CACGGGCATGTCCCAAGCCA
1 CACGGGCATGTCCCAAGCCA
61978674 CACGGGC
1 CACGGGC
61978681 GTGTGCCCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.45, G:0.26, T:0.09
Consensus pattern (20 bp):
CACGGGCATGTCCCAAGCCA
Found at i:61984615 original size:19 final size:19
Alignment explanation
Indices: 61984591--61984681 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
61984581 ATAATCTTCA
61984591 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
61984610 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
61984629 ATGATA--CAATATTAGAT
1 ATGATATGCAATCTTAGAT
61984646 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
61984664 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
61984682 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:61984661 original size:35 final size:36
Alignment explanation
Indices: 61984599--61984669 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
61984589 CAATGATATG
*
61984599 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATATTAGATATGATATGCAATCTTAGATATGATA
61984635 CAATATTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATATTAGATATGATATGCAATCTTAGATATGATA
61984670 TGCAATCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATATTAGATATGATATGCAATCTTAGATATGATA
Found at i:61984707 original size:22 final size:22
Alignment explanation
Indices: 61984591--61984704 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
61984581 ATAATCTTCA
61984591 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
61984610 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
* *
61984629 ATGATA--CAATATTAGAT---
1 ATGATATGCAATCTTAGAAGAT
61984646 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
61984664 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
61984686 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
61984705 GATTTAATTT
Statistics
Matches: 76, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
17 11 0.14
18 11 0.14
19 34 0.45
22 8 0.11
23 12 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:61984990 original size:17 final size:17
Alignment explanation
Indices: 61984968--61985004 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
61984958 CCATGTTTCC
61984968 TTAATTTTTT-ATATATT
1 TTAATTTTTTAATA-ATT
61984985 TTAATTTTTTAATAATT
1 TTAATTTTTTAATAATT
61985002 TTA
1 TTA
61985005 GTATCATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTAATTTTTTAATAATT
Found at i:61995312 original size:78 final size:77
Alignment explanation
Indices: 61995208--61995424 Score: 317
Period size: 78 Copynumber: 2.8 Consensus size: 77
61995198 CGAAGAAATA
** * * *
61995208 GATTTGGCATCTCCATATTCGACGGGGAGCAGATCGAAGACACAGCAGATCTGACTTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGAT-TGACCTTCATTGAA
*
61995273 GTAGATCCAAGAT
65 GCAGATCCAAGAT
* *
61995286 GATTTGGCATCTCTGTAATAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATT-GACCTTCATTGAA
61995351 GCAGATCCAAGAT
65 GCAGATCCAAGAT
* *
61995364 GATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATTTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGA-TTGACCTTCAT
61995425 GTGTTTACAT
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
77 1 0.01
78 122 0.98
79 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (77 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTGACCTTCATTGAAG
CAGATCCAAGAT
Found at i:61995502 original size:45 final size:45
Alignment explanation
Indices: 61995438--61995636 Score: 206
Period size: 45 Copynumber: 4.5 Consensus size: 45
61995428 TTTACATCGA
* * * * *
61995438 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
*
61995483 AGCAAATCGGAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
1 AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
** ** * *
61995528 AG-AAGATTAAAGA-AGTAGATTTGGCGTCTCTGTATTAGATGGGG
1 AGCAA-ATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
* *
61995572 AGCAGATCGAAGATAACAGATTTAGCGTCTCTGTATTAG-TGGGG
1 AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
* * * *
61995616 AACAGATCAAAGATAGCAGAT
1 AGCAAATCGAAGATAACAGAT
61995637 ATCCCCTTCC
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
44 60 0.47
45 69 0.53
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAAATCGAAGATAACAGATTTAGCATCTCTGTATTAGATGGGG
Found at i:61995563 original size:44 final size:45
Alignment explanation
Indices: 61995544--61995636 Score: 109
Period size: 44 Copynumber: 2.1 Consensus size: 45
61995534 TTAAAGAAGT
* * *
61995544 AGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAAC
1 AGATTTAGCATCTCTGTATTAGATGGGGAGAAGATCGAAGATAAC
* * *
61995589 AGATTTAGCGTCTCTGTATTAG-TGGGGA-ACAGATCAAAGATAGC
1 AGATTTAGCATCTCTGTATTAGATGGGGAGA-AGATCGAAGATAAC
61995633 AGAT
1 AGAT
61995637 ATCCCCTTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
44 22 0.51
45 21 0.49
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (45 bp):
AGATTTAGCATCTCTGTATTAGATGGGGAGAAGATCGAAGATAAC
Found at i:61995572 original size:89 final size:88
Alignment explanation
Indices: 61995455--61995616 Score: 270
Period size: 89 Copynumber: 1.8 Consensus size: 88
61995445 CCAAGATGAC
*
61995455 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTAGCATCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTAGCATCTCTGTATT
61995520 AGATGGGGAGAAGATTAAAGAAGT
66 AG-TGGGGAGAAGATTAAAGAAGT
* * * *
61995544 AGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAACAGATTTAGCGTCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTAGCATCTCTGTATT
61995609 AGTGGGGA
66 AGTGGGGA
61995617 ACAGATCAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
88 6 0.09
89 62 0.91
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (88 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTAGCATCTCTGTATT
AGTGGGGAGAAGATTAAAGAAGT
Found at i:61996021 original size:19 final size:19
Alignment explanation
Indices: 61995997--61996087 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
61995987 ATAATCTTCA
61995997 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
61996016 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
61996035 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
61996052 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
61996070 ATGACATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
61996088 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 37 0.54
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:61996068 original size:35 final size:37
Alignment explanation
Indices: 61996005--61996094 Score: 134
Period size: 35 Copynumber: 2.5 Consensus size: 37
61995995 CAATGATATG
61996005 CAATCTTAGATATGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
*
61996041 CAATCTTAGATATGAT-TGCAATCTTAGATATGACATG
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
61996078 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
61996095 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
35 19 0.38
36 19 0.38
37 12 0.24
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:61996402 original size:18 final size:17
Alignment explanation
Indices: 61996379--61996412 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
61996369 TTTCCCTAAT
*
61996379 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
61996397 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
61996413 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:61997190 original size:44 final size:44
Alignment explanation
Indices: 61997125--61997208 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
61997115 TTGCTATCTC
* *
61997125 AAAGTCCATGGTTGTACCATGGAAATTAAAGAAGAATTGACGAA
1 AAAGTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGAA
* * * *
61997169 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGAAATTAAAGAAGAATTGA
61997209 TGGTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 3 0.09
44 30 0.91
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGAA
Found at i:61997482 original size:55 final size:53
Alignment explanation
Indices: 61997362--61997499 Score: 159
Period size: 55 Copynumber: 2.5 Consensus size: 53
61997352 ATAAGGATAT
* *
61997362 TATGTAAGACCATGCCAAGGCATGGCACTGATAAGTTCTATAAGGCAAGGAAA
1 TATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAA
** * ***
61997415 TCATGTAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 T-ATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC-AAGGAAA
* *
61997471 TATGTATGACCATGCCAAGCCATGGCATT
1 TATGTAAGACCATGCCAAGACATGGCATT
61997500 AGTTAGTTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 31 0.44
55 33 0.47
56 5 0.07
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (53 bp):
TATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAA
Found at i:61997584 original size:47 final size:47
Alignment explanation
Indices: 61997515--61997630 Score: 169
Period size: 47 Copynumber: 2.5 Consensus size: 47
61997505 GTTCATAGGT
* *
61997515 AAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAC
* *
61997562 AAGGATACCATGTAAGACCATGTTTGGAACATATCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAC
* **
61997609 AAGGATATCACATAAGACCATG
1 AAGGATACCATGTAAGACCATG
61997631 CCAAGGCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGGTAAGAC
Found at i:61997667 original size:54 final size:54
Alignment explanation
Indices: 61997609--61997803 Score: 207
Period size: 55 Copynumber: 3.6 Consensus size: 54
61997599 TTGGTAAGAT
* * *
61997609 AAGGATATCACATAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATATCACATAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* ** * *
61997663 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATATCACATAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
61997718 AA--ATGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATATCACA--TAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
61997771 AAGGATACCACGTAAGACCATGTCAAGACATGG
1 AAGGATATCACATAAGACCATGCCAAGACATGG
61997804 AAATGGTAAG
Statistics
Matches: 113, Mismatches: 23, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
53 31 0.27
54 39 0.35
55 43 0.38
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATATCACATAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:61997734 original size:55 final size:53
Alignment explanation
Indices: 61997354--61997802 Score: 236
Period size: 54 Copynumber: 8.6 Consensus size: 53
61997344 GCACTAAGAT
** * * * * *
61997354 AAGGATATTATGTAAGACCATGCCAAGGCATGGCACTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATGAGTTC-ATAAGGC
* * * *
61997408 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATGAGTT-C-ATAAGGC
* * * * * *
61997463 AAAGG-T-CCTATGTATGACCATGCCAAGCCATGGCATT-AGTTAGTTCAT-AGGT
1 -AAGGATACC-ATGTAAGACCATGTCAAGACATGACATTGA-TGAGTTCATAAGGC
* *** * *
61997515 AAGGATACCATGTAAGGCCATGTTTGGAACATGGCATT--TG-G----TAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGACATTGATGAGTTCATAAGGC
*** **
61997562 AAGGATACCATGTAAGACCATGTTTGGAACAT-ATCATT--TG-G----TAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGA-CATTGATGAGTTCATAAGGC
* ** * * * * *
61997609 AAGGATATCACATAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATGAGTTC-ATAAGGC
* *
61997663 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATGAGTT-C-ATAAGGC
* * * * * *
61997718 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATGAGTTCATAAGGC
*
61997771 AAGGATACCACGTAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
61997803 GAAATGGTAA
Statistics
Matches: 314, Mismatches: 60, Indels: 43
0.75 0.14 0.10
Matches are distributed among these distances:
46 8 0.03
47 65 0.21
48 1 0.00
49 1 0.00
50 1 0.00
51 5 0.02
52 19 0.06
53 43 0.14
54 85 0.27
55 79 0.25
56 7 0.02
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATGAGTTCATAAGGC
Found at i:62007262 original size:18 final size:17
Alignment explanation
Indices: 62007218--62007263 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
62007208 GATTCTTAAT
62007218 AAGAATAA-AAATAAAA
1 AAGAATAAGAAATAAAA
62007234 AAGAA-AAGAAATAAAGA
1 AAGAATAAGAAATAAA-A
*
62007251 AATAATAAGAAAT
1 AAGAATAAGAAAT
62007264 CAAATAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 12 0.46
17 5 0.19
18 7 0.27
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (17 bp):
AAGAATAAGAAATAAAA
Found at i:62013727 original size:43 final size:43
Alignment explanation
Indices: 62013662--62013829 Score: 189
Period size: 43 Copynumber: 3.9 Consensus size: 43
62013652 AGCTCGTACA
* * * *
62013662 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
* * *
62013704 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCA-ATTAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACA-TAACG
* * *
62013747 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACA-ACACA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATA-ACG
* *
62013790 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATA
62013830 TCTGTAACCT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 7 0.07
43 97 0.92
44 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
Found at i:62016570 original size:9 final size:9
Alignment explanation
Indices: 62016558--62016614 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
62016548 TTTGATAAAC
62016558 ATGATATGT
1 ATGATATGT
*
62016567 ATGATATGCAC
1 ATGATATG--T
*
62016578 ATGACATGT
1 ATGATATGT
*
62016587 ATGATATGCAC
1 ATGATATG--T
62016598 ATGATATGT
1 ATGATATGT
62016607 ATGATATG
1 ATGATATG
62016615 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:62016581 original size:20 final size:20
Alignment explanation
Indices: 62016556--62016618 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
62016546 ATTTTGATAA
62016556 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
62016576 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
62016596 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62016616 ACA
1 ACA
62016619 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:62016742 original size:47 final size:47
Alignment explanation
Indices: 62016673--62016770 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
62016663 AGGAAGTGCA
62016673 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
62016720 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
62016768 AAA
1 AAA
62016771 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:62016787 original size:25 final size:24
Alignment explanation
Indices: 62016672--62016791 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
62016662 GAGGAAGTGC
62016672 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
62016696 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
62016720 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
62016743 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
62016768 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
62016792 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:62017019 original size:31 final size:31
Alignment explanation
Indices: 62016984--62017047 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
62016974 CGTTTACAGT
62016984 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
62017015 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
62017046 AA
1 AA
62017048 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:62024870 original size:18 final size:17
Alignment explanation
Indices: 62024836--62024878 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
62024826 AATCTTTAGT
*
62024836 CTAAAAATAACTAGAAA
1 CTAAAAATAAATAGAAA
*
62024853 CTAAAATATAAATTGAAA
1 CTAAAA-ATAAATAGAAA
*
62024871 ATAAAAAT
1 CTAAAAAT
62024879 TTAAGTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (17 bp):
CTAAAAATAAATAGAAA
Found at i:62028558 original size:27 final size:25
Alignment explanation
Indices: 62028493--62028562 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 25
62028483 CTATACATGT
*
62028493 ATGCTCACACGAGCTGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATGAGA
* * *
62028518 ATGCTCACATGAGCTGTGAAAATGGGC
1 ATGCTCACACGAGCTGTG--AATGAGA
*
62028545 CTGCTCACACGAGCTGTG
1 ATGCTCACACGAGCTGTG
62028563 GGGCGAAACG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 17 0.46
27 20 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATGAGA
Found at i:62038992 original size:34 final size:34
Alignment explanation
Indices: 62038949--62039020 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
62038939 AGAGACAGTC
*
62038949 CAGTATCAATGTGGG-CCTCAGCCC-TTAGCAGTTA
1 CAGTATCAATGTGGGCCCT-AGCCCATTA-CAGTGA
62038983 CAGTATCAATGTGGGCCCTAGCCCATTACAGTGA
1 CAGTATCAATGTGGGCCCTAGCCCATTACAGTGA
62039017 CAGT
1 CAGT
62039021 CCAGTATCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
34 29 0.83
35 6 0.17
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCCTAGCCCATTACAGTGA
Found at i:62058621 original size:16 final size:16
Alignment explanation
Indices: 62058597--62058627 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62058587 TTTCTTCACT
62058597 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
62058613 TACTTACTTACTTAA
1 TACTCACTTACTTAA
62058628 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:62058633 original size:20 final size:20
Alignment explanation
Indices: 62058594--62058633 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62058584 AAATTTCTTC
* *
62058594 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
62058614 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
62058634 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:62058947 original size:53 final size:54
Alignment explanation
Indices: 62058819--62059073 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 54
62058809 ACGCGGGTAC
* * *
62058819 CTTACCATTGCCATGACTTTG-CATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATG-CCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
62058868 CTTACCATTGCCATGTCTTGACATGGTCTTATATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
62058921 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * ** *
62058976 CTTATCAATGCCATGTCTTGACATGGTCTTACATAATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
62059029 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
62059074 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
48 3 0.02
49 33 0.20
50 1 0.01
52 2 0.01
53 48 0.29
54 10 0.06
55 69 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:62059018 original size:108 final size:110
Alignment explanation
Indices: 62058866--62059066 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
62058856 ATCCTTTTGA
* * **
62058866 AACTTACCATTGCCATGTCTTGACATGGTCTTATATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATAATATCCTTGCCTTA-GAAACCTCACCAA
62058929 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
62058974 AACTTATCAATGCCATGTCTTGACATGGTCTTACATAATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATAATATCCTTGCCTTAGAAACCTCACCAAT
*
62059039 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
62059067 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATAATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:62065620 original size:17 final size:16
Alignment explanation
Indices: 62065597--62065634 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
62065587 TTCTAAGCAT
62065597 TACTTTTATTGCAACA
1 TACTTTTATTGCAACA
62065613 TCACTTTTATTGCAACA
1 T-ACTTTTATTGCAACA
62065630 TACTT
1 TACTT
62065635 AAGTGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (16 bp):
TACTTTTATTGCAACA
Found at i:62074181 original size:115 final size:114
Alignment explanation
Indices: 62073970--62074314 Score: 555
Period size: 115 Copynumber: 3.0 Consensus size: 114
62073960 AACTTTAAGC
* *
62073970 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAAAAATCACCATGTTCAATTCTT
1 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTC-T
* * *
62074035 GAGAAAGTTGTAGAAAAACCTGCAAATGATCAACAACATAGAGGAATACG
65 CAGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
*
62074085 CTCGAAGTAAAGTGGTACTTGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCTA
1 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCT-
* **
62074150 CAGAAAGTTATAGAAAAACCTACAAACGATCAACAACATAGAGGAATAAA
65 CAGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
* *
62074200 CTCAAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTTAATTCTC
1 CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCTC
*
62074265 GAGAAAGTTGTAGGAAAACCTACAAACGATCAACAACATAGAGGAATACG
66 -AGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
62074315 TCGTAGTGGA
Statistics
Matches: 212, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
114 2 0.01
115 210 0.99
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (114 bp):
CTCGAAGTAAAGTGGTACTCGAGGAACTTTCGGGAGTGGTAGAATAATCACCAAGTTCAATTCTC
AGAAAGTTGTAGAAAAACCTACAAACGATCAACAACATAGAGGAATACG
Found at i:62076109 original size:15 final size:15
Alignment explanation
Indices: 62076091--62076122 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
62076081 TATTTTACTA
*
62076091 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
62076106 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
62076121 TT
1 TT
62076123 TGCATGCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:62079760 original size:30 final size:30
Alignment explanation
Indices: 62079726--62079786 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62079716 TTCCCGAGCC
62079726 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
62079756 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
62079786 T
1 T
62079787 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:62080567 original size:67 final size:64
Alignment explanation
Indices: 62080453--62080702 Score: 181
Period size: 67 Copynumber: 3.8 Consensus size: 64
62080443 ACAGATGGTA
* ** * * *
62080453 TGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC-AGACA-
62080516 TAT
62 TAT
* **
62080519 GTGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC-GGGATAT
1 -TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAGACATAT
* * * * * *
62080583 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 -TGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTAC-AGAC
*
62080648 AAAT
61 ATAT
* *
62080652 TG--GCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
62080703 CGAACTATAT
Statistics
Matches: 148, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 27 0.18
65 2 0.01
66 21 0.14
67 71 0.48
68 3 0.02
69 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAGACATAT
Found at i:62091630 original size:591 final size:590
Alignment explanation
Indices: 62090510--62091652 Score: 2027
Period size: 591 Copynumber: 1.9 Consensus size: 590
62090500 CACGTCCTAG
*
62090510 ACACACGCCCGTGTGTCTATCCATGTGGACTCTGTTGGGCTACTTTCCAAGCCTAGGTCACCCTT
1 ACACACGCCCGTGTGTCTATCCATGTGGACTCTGTTGGGCTACTTTCCAAGCCTAGGTCACCATT
* * *
62090575 CCCTACCTCTTATGCATAGAAATTTGCAAGTTTGAGAGAAAACATGATTTTACTCTTACACTTAT
66 CCCTACCTCTTATGCATAGAAATCTGCAAGTTTGAGAGAAAACATGATTTTACACTTACACATAT
* * *
62090640 AAATAATATTAATAAGACTCCCAGTGTGGAAACCTCATATCATTGGTTTCACACGAAAAGGCTAT
131 AAATAATATTAATAAGACTCCCAATGTGGAAACCTCATATCATTCGTGTCACACGAAAAGGCTAT
*
62090705 TTCCCATTAAGTATTCATGGGTTCTTATGTTATGTATTACATTCTAGAACTTGGCTCGTTTTTGA
196 TTCCCATTAAGTATTCATGGGTTCTTATGTTATGTATTACATTCAAGAACTTGGCTCGTTTTTGA
* * *
62090770 ACTCATTGCCACTTGTAGCATTCCATCATAATAGAGCTTGAACATGCAGATAAAGGCAGGTCATA
261 ACTCATTGCCAATTGTAGCATTCCATCATAATAGAGCATGAACATACAGATAAAGGCAGGTCATA
*
62090835 GCCTACTTTCAAATGTGCCATTTTCCATGGCCTTATACAAAAAGATGGGTACATCTTTACATGCC
326 GCCTACTTTCAAATGTGCCATTTTCCATGGCCTTACACAAAAAGATGGGTACATCTTTACATGCC
*
62090900 TTCATTTGGCAATTCAAATGACACATATGACAAAATACTCAAGACCCTATACATGCAATTAACAA
391 TTCATTTGGCAATTCAAATAACACATATGACAAAATACTCAAGACCCTATACATGCAATTAACAA
* *
62090965 AATAGTAGTGTCTTTATACCAAAGCTTGACCAGTTGATAGTGTGTTGACTCTCCAATTGTCTTCC
456 AATAGAAGTGTCTTTATACCAAAGCTTGACCAGTTGATAGTGTGTTGACTCTCCAATCGTCTTCC
62091030 AATCCTTATGAGTCCTCGAACTCTCAAAAACACGGTCACAGCACACGCCCGTGGGAGGAAATTGT
521 AATCCTTATGAGTCCTCGAACTCTCAAAAACACGGTCACAGCACACGCCCGTGGGAGGAAATTGT
62091095 GTGTC
586 GTGTC
*
62091100 ACACACGTCCGTGTGTCTATCCATGTGGACTCTGTTGGGCTA-TTGTCCAAGCCTAGGTCACCAT
1 ACACACGCCCGTGTGTCTATCCATGTGGACTCTGTTGGGCTACTT-TCCAAGCCTAGGTCACCAT
*
62091164 TCCCTACCTCTTATGCATAGAAATCTGCATGTTTGAGAGAAAACATGATTTTACACTTACACATA
65 TCCCTACCTCTTATGCATAGAAATCTGCAAGTTTGAGAGAAAACATGATTTTACACTTACACATA
* *
62091229 TAAATAATCTTAATAAGACTCCCAATGTGGAAACCTCATATCATTCGTGTCACACGAAAAGGTTA
130 TAAATAATATTAATAAGACTCCCAATGTGGAAACCTCATATCATTCGTGTCACACGAAAAGGCTA
*
62091294 TTTCCCATTTAGTATTCATGGGTTCTTATGTTATAGTATTACATTCAAGAACTTGGCTCGTTTTT
195 TTTCCCATTAAGTATTCATGGGTTCTTATGTTAT-GTATTACATTCAAGAACTTGGCTCGTTTTT
*
62091359 GAACTCATTGCCAATTGTAGCATTCCATCTTAATAGAGCATGAACATACAGATAAAGGCAGGTCA
259 GAACTCATTGCCAATTGTAGCATTCCATCATAATAGAGCATGAACATACAGATAAAGGCAGGTCA
*
62091424 TAGCCTACTTTCAAATGTGTCATTTTCCATGGCCTTACACAAAAAGATGGGTACATCTTTACATG
324 TAGCCTACTTTCAAATGTGCCATTTTCCATGGCCTTACACAAAAAGATGGGTACATCTTTACATG
* *
62091489 CCTTCGTTTGGCAATTCAAATAACACATATGACAAAATACTCAAGACCCTATACATGCCATTAAC
389 CCTTCATTTGGCAATTCAAATAACACATATGACAAAATACTCAAGACCCTATACATGCAATTAAC
*
62091554 AAAATAGAAGTGTCTTTATACCAAAGCTTGACCAGTTGATAGTGTGTTGACTCTCCAGTCGTCTT
454 AAAATAGAAGTGTCTTTATACCAAAGCTTGACCAGTTGATAGTGTGTTGACTCTCCAATCGTCTT
*
62091619 CCAATCCTTATGAGTCCTCGAACTCTGAAAAACA
519 CCAATCCTTATGAGTCCTCGAACTCTCAAAAACA
62091653 GGGAAAAGAG
Statistics
Matches: 525, Mismatches: 26, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
589 2 0.00
590 213 0.41
591 310 0.59
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (590 bp):
ACACACGCCCGTGTGTCTATCCATGTGGACTCTGTTGGGCTACTTTCCAAGCCTAGGTCACCATT
CCCTACCTCTTATGCATAGAAATCTGCAAGTTTGAGAGAAAACATGATTTTACACTTACACATAT
AAATAATATTAATAAGACTCCCAATGTGGAAACCTCATATCATTCGTGTCACACGAAAAGGCTAT
TTCCCATTAAGTATTCATGGGTTCTTATGTTATGTATTACATTCAAGAACTTGGCTCGTTTTTGA
ACTCATTGCCAATTGTAGCATTCCATCATAATAGAGCATGAACATACAGATAAAGGCAGGTCATA
GCCTACTTTCAAATGTGCCATTTTCCATGGCCTTACACAAAAAGATGGGTACATCTTTACATGCC
TTCATTTGGCAATTCAAATAACACATATGACAAAATACTCAAGACCCTATACATGCAATTAACAA
AATAGAAGTGTCTTTATACCAAAGCTTGACCAGTTGATAGTGTGTTGACTCTCCAATCGTCTTCC
AATCCTTATGAGTCCTCGAACTCTCAAAAACACGGTCACAGCACACGCCCGTGGGAGGAAATTGT
GTGTC
Found at i:62096471 original size:24 final size:23
Alignment explanation
Indices: 62096419--62096472 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
62096409 GAACTTGCTC
*
62096419 ATAATATTAATCATATAAATCAT
1 ATAATATTAATCATATAAAACAT
*
62096442 ATAATATTAAATCAATCTAAAACAT
1 ATAATATT-AATC-ATATAAAACAT
62096467 A-AATAT
1 ATAATAT
62096473 AGAATTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 8 0.30
24 9 0.33
25 10 0.37
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (23 bp):
ATAATATTAATCATATAAAACAT
Found at i:62101234 original size:5 final size:5
Alignment explanation
Indices: 62101219--62101338 Score: 77
Period size: 5 Copynumber: 22.8 Consensus size: 5
62101209 TATTACACAA
*
62101219 AAAATT AAAAT AAAAT AAAGT -AAAT AACTAAT AAAAT AAAAT AATTAAT
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AA--AAT AAAAT AAAAT AA--AAT
* * * *
62101268 -TAAT AAGAT ATAAT AAAA- AATAAA AAAAT AAAAT AAAAAT AAAAT AAAAAT
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT -AAAAT AAAAT -AAAAT
62101319 AAAAAT AAAGA- AAAAT AAAA
1 -AAAAT AAA-AT AAAAT AAAA
62101339 ATTGGGTTGT
Statistics
Matches: 93, Mismatches: 9, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
4 9 0.10
5 53 0.57
6 23 0.25
7 8 0.09
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:62101251 original size:21 final size:21
Alignment explanation
Indices: 62101227--62101338 Score: 95
Period size: 21 Copynumber: 5.3 Consensus size: 21
62101217 AAAAAATTAA
* *
62101227 AATAAAATAAAGTAAATAACT
1 AATAAAATAAAATAAATAAAT
* *
62101248 AATAAAATAAAATAATTAATT
1 AATAAAATAAAATAAATAAAT
* *
62101269 AATAAGATATAATAAA-AAAT
1 AATAAAATAAAATAAATAAAT
* *
62101289 AAAAAAATAAAATAAA-AATAA
1 AATAAAATAAAATAAATAA-AT
*
62101310 AATAAAAATAAAAATAAAGAAA-
1 AAT-AAAAT-AAAATAAATAAAT
62101332 AATAAAA
1 AATAAAA
62101339 ATTGGGTTGT
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
20 18 0.24
21 38 0.51
22 8 0.11
23 9 0.12
24 2 0.03
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (21 bp):
AATAAAATAAAATAAATAAAT
Found at i:62101300 original size:6 final size:6
Alignment explanation
Indices: 62101283--62101340 Score: 68
Period size: 6 Copynumber: 10.0 Consensus size: 6
62101273 AGATATAATA
* *
62101283 AAAAAT AAAAAA ATAAAAT AAAAAT -AAAAT AAAAAT AAAAAT --AAAG
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
62101329 AAAAAT AAAAAT
1 AAAAAT AAAAAT
62101341 TGGGTTGTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 3 0.07
5 5 0.11
6 31 0.70
7 5 0.11
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:62109904 original size:40 final size:40
Alignment explanation
Indices: 62109803--62110023 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
62109793 TATTCGAATA
* ** *
62109803 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCT-AGTGACT
* * * * *
62109844 ATATCAGGACTAAGATCCGAAGGCATTTGTG-TGAGTTACT
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCT-AGTGACT
* *
62109884 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGTGACT
** * *
62109924 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGTGACT
* * **
62109964 ATATCCGGGCTAAAACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGTGACT
*
62110003 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAAACCCGAAG
62110024 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
38 14 0.09
39 15 0.10
40 94 0.63
41 27 0.18
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGTGACT
Found at i:62112959 original size:54 final size:54
Alignment explanation
Indices: 62112884--62113039 Score: 226
Period size: 54 Copynumber: 2.9 Consensus size: 54
62112874 CATATCACGC
*
62112884 CGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACGTCACAT
1 CGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACATCACAT
* * *
62112938 CGATGCCATAGCCCAGTTATGGTCTTATACGAAAATCGCATGATCACATCACAT
1 CGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACATCACAT
* * *
62112992 TGATGCCATAGCGTAA-CTATGGTCTTATGCGAAAATCACAT-ATCACAT
1 CGATGCCATAGC-CAAGCTATGGTCTTATACGAAAATCACATGATCACAT
62113040 GTTGCCATGG
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
53 7 0.08
54 83 0.91
55 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (54 bp):
CGATGCCATAGCCAAGCTATGGTCTTATACGAAAATCACATGATCACATCACAT
Found at i:62119374 original size:40 final size:40
Alignment explanation
Indices: 62119319--62119666 Score: 588
Period size: 40 Copynumber: 8.7 Consensus size: 40
62119309 GAGCATTGGA
62119319 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62119359 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62119399 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62119439 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
62119479 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62119519 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
62119559 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62119599 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
62119639 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
62119667 AGGTGTTTGC
Statistics
Matches: 287, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 287 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:62127728 original size:40 final size:40
Alignment explanation
Indices: 62127673--62128020 Score: 588
Period size: 40 Copynumber: 8.7 Consensus size: 40
62127663 GAGCATTGGA
62127673 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62127713 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62127753 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62127793 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
62127833 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62127873 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
62127913 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62127953 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
62127993 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
62128021 AGGTGTTTGC
Statistics
Matches: 287, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 287 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:62140733 original size:27 final size:27
Alignment explanation
Indices: 62140703--62140811 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 27
62140693 ATAGTCATCA
* * *
62140703 TACCATAAAAGGGTAAAAGAATCATTT
1 TACCACAAAAGGGCAAAACAATCATTT
* *
62140730 TACCACATAAGGGCAAAACAGTCATTT
1 TACCACAAAAGGGCAAAACAATCATTT
* * * * *
62140757 TACCTCATAAGGGCAAAATAGTTATTT
1 TACCACAAAAGGGCAAAACAATCATTT
* *
62140784 TACCCCATAAA-GGCAAAATAATCATTT
1 TACCACA-AAAGGGCAAAACAATCATTT
62140811 T
1 T
62140812 GTCAATTTAG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
27 67 0.97
28 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (27 bp):
TACCACAAAAGGGCAAAACAATCATTT
Found at i:62148663 original size:48 final size:48
Alignment explanation
Indices: 62148611--62148741 Score: 158
Period size: 48 Copynumber: 2.7 Consensus size: 48
62148601 CTCTCACACT
* *
62148611 AAGTGCTCAA-ATCATGGCCCGAAGCCAACTCAAT-ATATCTCATACCCG
1 AAGTGCT-AATATCATGGCCCGAAGCCAAATCAATGA-AGCTCATACCCG
*
62148659 AAGTGCTAATATCATGGCCTGAAGCCAAATCAATGAAGCTCATACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGCTCATACCCG
* ** * *
62148707 AAGTGTTGTTATCATAGACCGAAGCCAAATCAATG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATG
62148742 TATCCCCTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
47 2 0.03
48 69 0.96
49 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGCTCATACCCG
Found at i:62155627 original size:48 final size:47
Alignment explanation
Indices: 62155565--62155692 Score: 136
Period size: 48 Copynumber: 2.7 Consensus size: 47
62155555 CTCGCACACT
* * * *
62155565 AAGTGCTCAA-ATCATGGCTCGAAGCCAACTCAATA-TATCTCGTACCTG
1 AAGTGCT-AATATCATGGC-CGAAGCCAAATCAA-AGAAGCCCGTACCTG
62155613 AAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGAAGCCCGTACCTG
1 AAGTGCTAATATCATGG-CCGAAGCCAAATCAAAGAAGCCCGTACCTG
**
62155661 AAGTG-TCGTATCATGGACCGAAGCCAAATCAA
1 AAGTGCTAATATCATGG-CCGAAGCCAAATCAA
62155693 CGTATCCCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
47 27 0.39
48 42 0.60
49 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (47 bp):
AAGTGCTAATATCATGGCCGAAGCCAAATCAAAGAAGCCCGTACCTG
Found at i:62157163 original size:18 final size:18
Alignment explanation
Indices: 62157116--62157156 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
62157106 AGATGGATTG
*
62157116 ATATGAT-ATATATATGT
1 ATATGATAAGATATATGT
62157133 ATATGATAAGATATATGT
1 ATATGATAAGATATATGT
62157151 ATATGA
1 ATATGA
62157157 AGTGATAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (18 bp):
ATATGATAAGATATATGT
Found at i:62162876 original size:40 final size:40
Alignment explanation
Indices: 62162810--62162885 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
62162800 TCAAGCACAA
* ** **
62162810 ATAAAACACAAAATTAAAAATTAAAAACTATTAAAAATCT
1 ATAAAACACAAAATGAAAAAGAAAAAAAAATTAAAAATCT
62162850 ATAAAA-ACAAAATGAAATAAGAAAAAAAAATTAAAA
1 ATAAAACACAAAATGAAA-AAGAAAAAAAAATTAAAA
62162886 TTTTCTATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 10 0.33
40 20 0.67
ACGTcount: A:0.71, C:0.07, G:0.03, T:0.20
Consensus pattern (40 bp):
ATAAAACACAAAATGAAAAAGAAAAAAAAATTAAAAATCT
Found at i:62170222 original size:30 final size:30
Alignment explanation
Indices: 62170188--62170247 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
62170178 ATGAAGATGA
*
62170188 AAGAAATATGGTTGAATTGGAACTCGAACT
1 AAGAAATATGGTTAAATTGGAACTCGAACT
62170218 AAGAAATATGGTTAAATTGGAACTCGAACT
1 AAGAAATATGGTTAAATTGGAACTCGAACT
62170248 GAAGGGAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.27
Consensus pattern (30 bp):
AAGAAATATGGTTAAATTGGAACTCGAACT
Found at i:62171904 original size:42 final size:42
Alignment explanation
Indices: 62171845--62171973 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 42
62171835 TTAGGGTTAC
*
62171845 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGGTA
* * * *
62171887 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGGTA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATTGGTA
* * ** **
62171930 CGAAATTACAAGTAAGACCATATCTAAGATATGGCATTGGTA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGGTA
62171972 TG
1 TG
62171974 GTACTGTGTG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 39 0.56
43 31 0.44
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGGTA
Found at i:62173025 original size:17 final size:17
Alignment explanation
Indices: 62173003--62173061 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
62172993 ATGCTTGGTG
62173003 AATGTGAATTGTTTGGA
1 AATGTGAATTGTTTGGA
*
62173020 AATGTG-ATT-TATGGCA
1 AATGTGAATTGTTTGG-A
* *
62173036 TGAATGTGAAATGTTTGGT
1 --AATGTGAATTGTTTGGA
62173055 AATGTGA
1 AATGTGA
62173062 TCTATTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 4 0.12
16 4 0.12
17 13 0.39
18 6 0.18
19 2 0.06
20 4 0.12
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.39
Consensus pattern (17 bp):
AATGTGAATTGTTTGGA
Found at i:62174909 original size:39 final size:40
Alignment explanation
Indices: 62174766--62174912 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
62174756 TGAAAAAAAA
* * *
62174766 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
62174806 TATAATCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
62174846 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
62174886 TAT-ACCGGGTTAAGTCCCGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
62174913 TGTACTGGTT
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 23 0.23
40 76 0.77
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:62181396 original size:40 final size:40
Alignment explanation
Indices: 62181350--62181512 Score: 220
Period size: 40 Copynumber: 4.1 Consensus size: 40
62181340 GGGATTTAGT
62181350 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
62181390 CGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
62181430 TGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCC
1 CGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * *
62181470 CGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
62181510 CGG
1 CGG
62181513 TTATCATCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
Found at i:62181484 original size:80 final size:80
Alignment explanation
Indices: 62181351--62181507 Score: 244
Period size: 80 Copynumber: 2.0 Consensus size: 80
62181341 GGATTTAGTC
* * *
62181351 GGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCC
1 GGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCC
*
62181416 TTCGGGTCTTAGCCT
66 TTCGGATCTTAGCCT
* *
62181431 GGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 GGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
62181495 CTTCGGATCTTAG
65 CTTCGGATCTTAG
62181508 TCCGGTTATC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
80 69 0.99
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
GGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCC
TTCGGATCTTAGCCT
Found at i:62189578 original size:40 final size:40
Alignment explanation
Indices: 62189511--62189687 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
62189501 ACCCAAGCAT
*
62189511 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
62189550 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
62189590 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
62189630 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
62189670 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
62189688 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:62194877 original size:30 final size:30
Alignment explanation
Indices: 62194840--62194917 Score: 115
Period size: 30 Copynumber: 2.6 Consensus size: 30
62194830 ATCAATATTC
*
62194840 ATATGGCCCATTAGGCCCAA-ATCACCTGT
1 ATATGGCCCATTAGGCCCAACATCACATGT
*
62194869 ATTATGGCCCATTAGGCCCAACATCACATTT
1 A-TATGGCCCATTAGGCCCAACATCACATGT
62194900 ATATGGCCCA-TAGGCCCA
1 ATATGGCCCATTAGGCCCA
62194918 GTCACATTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
29 9 0.20
30 28 0.62
31 8 0.18
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (30 bp):
ATATGGCCCATTAGGCCCAACATCACATGT
Found at i:62195188 original size:24 final size:24
Alignment explanation
Indices: 62195140--62195194 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
62195130 GTAGCCAAAC
* *
62195140 TTTCAACTTTTCGGCATTTCGGCT
1 TTTCGACTTTTCGGCATTTCAGCT
*
62195164 TTTCGACTTTTCGGCATTTTAGCT
1 TTTCGACTTTTCGGCATTTCAGCT
62195188 TTGTCGA
1 TT-TCGA
62195195 TACATAATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (24 bp):
TTTCGACTTTTCGGCATTTCAGCT
Found at i:62198644 original size:24 final size:23
Alignment explanation
Indices: 62198607--62198679 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 23
62198597 TATCAATATA
*
62198607 TCAGCTCGTAAGAGCTTACTAGT
1 TCAGCTCGTTAGAGCTTACTAGT
* *
62198630 CTCAGCTAGTTAGAGCTTACTGGT
1 -TCAGCTCGTTAGAGCTTACTAGT
*
62198654 TCCAGCTCGATAGAGCTTACTA-T
1 T-CAGCTCGTTAGAGCTTACTAGT
62198677 TCA
1 TCA
62198680 TCAACTCAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
22 2 0.05
23 3 0.07
24 37 0.88
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (23 bp):
TCAGCTCGTTAGAGCTTACTAGT
Found at i:62201699 original size:16 final size:16
Alignment explanation
Indices: 62201674--62201716 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
62201664 AATTAGTCGT
*
62201674 TAAA-AAATAATTTTG
1 TAAATAAATAATTTGG
*
62201689 TAAATAAATAAATTGG
1 TAAATAAATAATTTGG
62201705 TAAATAAATAAT
1 TAAATAAATAAT
62201717 AACAAACTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (16 bp):
TAAATAAATAATTTGG
Found at i:62201806 original size:16 final size:15
Alignment explanation
Indices: 62201780--62201813 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
62201770 AGGCTAATTA
62201780 TTTATTATTATTCTT
1 TTTATTATTATTCTT
62201795 TTTATCTATTATTCTT
1 TTTAT-TATTATTCTT
62201811 TTT
1 TTT
62201814 CCTTCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTATTATTCTT
Found at i:62296809 original size:40 final size:39
Alignment explanation
Indices: 62296747--62297001 Score: 372
Period size: 40 Copynumber: 6.5 Consensus size: 39
62296737 AAACCAAGTA
* * *
62296747 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
**
62296786 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
62296826 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
62296866 CCTTCGGGACTTAGCCC-GAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
62296904 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
* *
62296944 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
62296984 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
62297002 TTATCATCCG
Statistics
Matches: 203, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
38 36 0.18
39 18 0.09
40 149 0.73
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:62296981 original size:118 final size:119
Alignment explanation
Indices: 62296747--62297001 Score: 383
Period size: 118 Copynumber: 2.2 Consensus size: 119
62296737 AAACCAAGTA
* * * *
62296747 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
** *
62296812 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
62296866 CCTTCGGGACTTAGCCCGA-ATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAGCCCGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
*
62296928 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
62296984 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
62297002 TTATCATCCG
Statistics
Matches: 125, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
117 3 0.02
118 106 0.85
119 16 0.13
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:62306180 original size:39 final size:39
Alignment explanation
Indices: 62306126--62306257 Score: 176
Period size: 39 Copynumber: 3.4 Consensus size: 39
62306116 TGCATGGTAT
62306126 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* *
62306165 TGGAAATATATCCGGATTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * * * * *
62306204 TAGAAATATATTCGGACTTAAAGTCTGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
62306243 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
62306258 GCTAAGTCCC
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 2 0.02
39 79 0.98
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:62306283 original size:39 final size:39
Alignment explanation
Indices: 62306250--62306465 Score: 333
Period size: 39 Copynumber: 5.5 Consensus size: 39
62306240 TGCTGGAAAA
62306250 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * **
62306289 ATATCCGGGCTAAGTCCTGAAGGCATTCATGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
62306328 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
62306367 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
62306406 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
62306445 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
62306466 CATGCTTTGT
Statistics
Matches: 163, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 154 0.94
40 1 0.01
41 8 0.05
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:62306292 original size:78 final size:78
Alignment explanation
Indices: 62306224--62306455 Score: 308
Period size: 78 Copynumber: 3.0 Consensus size: 78
62306214 TTCGGACTTA
* * *
62306224 AAGT-CTGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 AAGTCCTGAAGGCATAAGTGCTGGAGATATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
62306287 TTATATCCGGGCT
66 TTATATCCGGGCT
* * *
62306300 AAGTCCTGAAGGCATTCA-TGCTGGTGCTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 AAGTCCTGAAGGCA-TAAGTGCTGGAGATATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
**
62306364 GCTATATCCGGGCT
65 ATTATATCCGGGCT
* ** * * *
62306378 AAGTCCCGAAGGCATTCGTGTTGGCGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 AAGTCCTGAAGGCATAAGTGCTGGAGATATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
62306443 TTATATCCGGGCT
66 TTATATCCGGGCT
62306456 TAAAGTCCCG
Statistics
Matches: 136, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
76 4 0.03
77 8 0.06
78 122 0.90
79 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (78 bp):
AAGTCCTGAAGGCATAAGTGCTGGAGATATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
TTATATCCGGGCT
Found at i:62332415 original size:29 final size:30
Alignment explanation
Indices: 62332358--62332415 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
62332348 TTAAAAATCG
* *
62332358 ATATTATAATAAATTTAGTTCTAACTTTAC
1 ATATTATAATAAATTTAATTATAACTTTAC
* *
62332388 ATATTAT-ATTAATTTAATTATAATTTTA
1 ATATTATAATAAATTTAATTATAACTTTA
62332416 AAAAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (30 bp):
ATATTATAATAAATTTAATTATAACTTTAC
Found at i:62332977 original size:21 final size:21
Alignment explanation
Indices: 62332951--62333006 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
62332941 AACAGCGGTG
*
62332951 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
62332972 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
62332993 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
62333007 AACAGCGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:62333857 original size:19 final size:18
Alignment explanation
Indices: 62333810--62333867 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
62333800 AAATAATATA
62333810 TAAATATATTATATATTTT
1 TAAATATATTATATA-TTT
* * *
62333829 TTATTTTATTATATATTT
1 TAAATATATTATATATTT
*
62333847 TAAATAATATTTATACATTT
1 TAAAT-ATA-TTATATATTT
62333867 T
1 T
62333868 TATATGTTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 6 0.20
19 14 0.47
20 10 0.33
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TAAATATATTATATATTT
Found at i:62333887 original size:40 final size:40
Alignment explanation
Indices: 62333812--62333887 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
62333802 ATAATATATA
* *
62333812 AATATATTATATATTTTTTATTTTATTATATATTTTAAAT
1 AATATATTATACATTTTTTATTTTATTATAAATTTTAAAT
62333852 AATAT-TTATACATTTTTATATGTTTATT-TAAATTTT
1 AATATATTATACATTTTT-TAT-TTTATTATAAATTTT
62333888 TTAAAATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
39 11 0.34
40 15 0.47
41 6 0.19
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (40 bp):
AATATATTATACATTTTTTATTTTATTATAAATTTTAAAT
Found at i:62334647 original size:18 final size:18
Alignment explanation
Indices: 62334624--62334660 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
62334614 TGGATCACTT
62334624 ATTAAGATAGGTTGATTG
1 ATTAAGATAGGTTGATTG
62334642 ATTAAGATAGGTTGATTG
1 ATTAAGATAGGTTGATTG
62334660 A
1 A
62334661 CCTTAACTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (18 bp):
ATTAAGATAGGTTGATTG
Found at i:62334771 original size:24 final size:24
Alignment explanation
Indices: 62334744--62334818 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
62334734 AATTTGACAA
62334744 TTAAGTCTATTTTGTTGTATTAAT
1 TTAAGTCTATTTTGTTGTATTAAT
* * *
62334768 TTAAAT-TAGTTTTAATT-TGA-CAA-
1 TTAAGTCTA-TTTT-GTTGT-ATTAAT
62334791 TTAAGTCTATTTTGTTGTATTAAT
1 TTAAGTCTATTTTGTTGTATTAAT
62334815 TTAA
1 TTAA
62334819 ATTTTATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 3 0.08
23 14 0.37
24 18 0.47
25 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.11, T:0.55
Consensus pattern (24 bp):
TTAAGTCTATTTTGTTGTATTAAT
Found at i:62334796 original size:47 final size:47
Alignment explanation
Indices: 62334727--62334821 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
62334717 GAGTTAAGAG
62334727 TAGTTTTAATTTGACAATTAAGTCTATTTTGTTGTATTAATTTAAAT
1 TAGTTTTAATTTGACAATTAAGTCTATTTTGTTGTATTAATTTAAAT
62334774 TAGTTTTAATTTGACAATTAAGTCTATTTTGTTGTATTAATTTAAAT
1 TAGTTTTAATTTGACAATTAAGTCTATTTTGTTGTATTAATTTAAAT
62334821 T
1 T
62334822 TTATCAAGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.54
Consensus pattern (47 bp):
TAGTTTTAATTTGACAATTAAGTCTATTTTGTTGTATTAATTTAAAT
Found at i:62336848 original size:17 final size:18
Alignment explanation
Indices: 62336813--62336850 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
62336803 TTTGAATAAT
62336813 AACAAGTGTAATATTTAA
1 AACAAGTGTAATATTTAA
62336831 AACAATGTGT-AT-TTTAA
1 AACAA-GTGTAATATTTAA
62336848 AAC
1 AAC
62336851 GATAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (18 bp):
AACAAGTGTAATATTTAA
Found at i:62340873 original size:39 final size:40
Alignment explanation
Indices: 62340792--62340902 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
62340782 GATTTAGCTC
* * *
62340792 CTCATTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAA
1 CTCATTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAA
*
62340832 CTCATTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAA
1 CTCATTCAATGCCTTCGGGACTTAACCCGGATTATATAAA
***
62340871 CTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 CTCATTC-AATGCCTTCGGGACTTAACCCGGA
62340903 ATTAGTATCT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 25 0.40
40 37 0.60
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
CTCATTCAATGCCTTCGGGACTTAACCCGGATTATATAAA
Found at i:62340891 original size:40 final size:39
Alignment explanation
Indices: 62340839--62340969 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
62340829 TAACTCATTC
* *
62340839 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
62340879 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
62340919 AAGGCCTTCGGGACTTAACCCAGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
62340959 AATACCTTCGG
1 AATGCCTTCGG
62340970 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.96
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:62340982 original size:80 final size:80
Alignment explanation
Indices: 62340842--62341014 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 80
62340832 CTCATTCAAT
* * * *
62340842 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCAGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
*
62340906 AGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
62340921 GGCCTTCGGGACTTAACCCAGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCAGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
62340984 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
62341002 GCCTTC-GGACTTA
1 GCCTTCGGGACTTA
62341015 GCCCGGACAG
Statistics
Matches: 81, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
79 14 0.17
80 56 0.69
81 10 0.12
82 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCAGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:62348697 original size:39 final size:40
Alignment explanation
Indices: 62348616--62348726 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
62348606 GATTTAGCTC
* * *
62348616 CTCATTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAA
1 CTCATTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAA
*
62348656 CTCATTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAA
1 CTCATTCAATGCCTTCGGGACTTAACCCGGATTATATAAA
***
62348695 CTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 CTCATTC-AATGCCTTCGGGACTTAACCCGGA
62348727 ATTAGTATCT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 25 0.40
40 37 0.60
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
CTCATTCAATGCCTTCGGGACTTAACCCGGATTATATAAA
Found at i:62348725 original size:79 final size:80
Alignment explanation
Indices: 62348626--62348793 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
62348616 CTCATTCAAG
* * * ** * *
62348626 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
62348689 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
62348705 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
62348770 AATAACTCGCACAAA
66 AATAACTCGCACAAA
*
62348785 TACCTTCGG
1 TGCCTTCGG
62348794 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
79 31 0.42
80 43 0.58
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:62348777 original size:80 final size:80
Alignment explanation
Indices: 62348666--62348839 Score: 214
Period size: 80 Copynumber: 2.2 Consensus size: 80
62348656 CTCATTCAAT
* * *
62348666 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
62348729 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
62348745 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
62348809 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
62348826 GCCTTCGGGACTTA
1 GCCTTCGGGACTTA
62348840 GCCGGACAGC
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
79 7 0.08
80 65 0.78
81 10 0.12
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:62348806 original size:40 final size:40
Alignment explanation
Indices: 62348663--62348793 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
62348653 TAACTCATTC
* *
62348663 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
62348703 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
62348743 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
62348783 AATACCTTCGG
1 AATGCCTTCGG
62348794 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:62352125 original size:27 final size:27
Alignment explanation
Indices: 62352095--62352272 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62352085 ATATTGAGTC
* * * *
62352095 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62352122 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62352149 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62352177 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62352204 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62352231 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62352258 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62352273 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62352234 original size:82 final size:81
Alignment explanation
Indices: 62352116--62352271 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62352106 TGCTATATAA
* *
62352116 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62352181 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62352198 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62352262 CACTTAGTGC
65 CACTTAGTGC
62352272 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62354792 original size:7 final size:7
Alignment explanation
Indices: 62354780--62354820 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
62354770 TTTCACTATT
62354780 TACCTTA
1 TACCTTA
62354787 TACCTTA
1 TACCTTA
62354794 TACCTTA
1 TACCTTA
62354801 TACCTTA
1 TACCTTA
62354808 TACCTTA
1 TACCTTA
62354815 TACCTT
1 TACCTT
62354821 GCCACCATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (7 bp):
TACCTTA
Found at i:62358077 original size:20 final size:20
Alignment explanation
Indices: 62358051--62358125 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 20
62358041 CTTGTACGGG
62358051 ATTTGCACTTCGGTGCCTCT
1 ATTTGCACTTCGGTGCCTCT
* *
62358071 GTTTGCACTGCGGTGCCTCT
1 ATTTGCACTTCGGTGCCTCT
62358091 ATTTGCACTTCGGTGCCTCT
1 ATTTGCACTTCGGTGCCTCT
* *
62358111 ATATACACTTCGGTG
1 ATTTGCACTTCGGTG
62358126 TCCTTGTTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.37
Consensus pattern (20 bp):
ATTTGCACTTCGGTGCCTCT
Found at i:62359035 original size:20 final size:20
Alignment explanation
Indices: 62358995--62359036 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
62358985 ATAATGACAT
* * *
62358995 GTATAGGATGTTTTGTTATG
1 GTATAGGATGATATGTAATG
62359015 GTATAGGATGATATGTAATG
1 GTATAGGATGATATGTAATG
62359035 GT
1 GT
62359037 GATTTGGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (20 bp):
GTATAGGATGATATGTAATG
Found at i:62368919 original size:23 final size:23
Alignment explanation
Indices: 62368876--62368919 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
62368866 CATCATAATA
*
62368876 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
62368899 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
62368920 CCAAACCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:62375216 original size:25 final size:25
Alignment explanation
Indices: 62375182--62375248 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
62375172 CCCATTTCAC
62375182 AGCTTGTGTGAGCATTTACAGTCAT
1 AGCTTGTGTGAGCATTTACAGTCAT
* * *
62375207 AGCTCGTGTGAGCATTTGCCGTCAT
1 AGCTTGTGTGAGCATTTACAGTCAT
*
62375232 AGCTTGTGTGAGAATTT
1 AGCTTGTGTGAGCATTT
62375249 TCTCTGTATC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (25 bp):
AGCTTGTGTGAGCATTTACAGTCAT
Done.