Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 183 of 311
Found at i:62822448 original size:96 final size:96
Alignment explanation
Indices: 62822279--62822458 Score: 297
Period size: 96 Copynumber: 1.9 Consensus size: 96
62822269 CGTGTTAAAA
*
62822279 GTGCATGTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCA
1 GTGCATGTGTAAGACCATGTCTGGGAAATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCA
*
62822344 CGTCTGGGACATGGCATCGATGATATTATAT
66 CGTATGGGACATGGCATCGATGATATTATAT
* * **
62822375 GTGCCTGTGTAAGACCATGTCTGGGAAATGGCGTCGGCGATGATATGTGTGCTAGTGTAAGACCA
1 GTGCATGTGTAAGACCATGTCTGGGAAATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCA
*
62822440 TGTATGGGACATGGCATCG
66 CGTATGGGACATGGCATCG
62822459 GCAATGGTAT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (96 bp):
GTGCATGTGTAAGACCATGTCTGGGAAATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCA
CGTATGGGACATGGCATCGATGATATTATAT
Found at i:62822460 original size:48 final size:48
Alignment explanation
Indices: 62822285--62822458 Score: 244
Period size: 48 Copynumber: 3.6 Consensus size: 48
62822275 AAAAGTGCAT
*
62822285 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCTA
* * *
62822333 GTGTAAGACCACGTCTGGGACATGGCATCGATGAT-ATTATATGTGCCT-
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGA-TATGTGTG-CTA
* * *
62822381 GTGTAAGACCATGTCTGGGAAATGGCGTCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCTA
*
62822429 GTGTAAGACCATGTATGGGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
62822459 GCAATGGTAT
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
47 3 0.03
48 103 0.94
49 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCTA
Found at i:62822482 original size:48 final size:48
Alignment explanation
Indices: 62822285--62822504 Score: 214
Period size: 48 Copynumber: 4.6 Consensus size: 48
62822275 AAAAGTGCAT
** * *
62822285 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATCTGTGCTA
* *** *
62822333 GTGTAAGACCACGTCTGGGACATGGCATCGATGAT-ATTATATGTGCCT-
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGA-TATCTGTG-CTA
* * * *
62822381 GTGTAAGACCATGTCTGGGAAATGGCGTCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATCTGTGCTA
* * *
62822429 GTGTAAGACCATGTATGGGACATGGCATCGGCAATGGTATCTG-GATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATCTGTG-CT-A
* *
62822478 -TGTAACACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
62822505 TGGTACTTTA
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
47 4 0.03
48 138 0.95
49 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATCTGTGCTA
Found at i:62822482 original size:96 final size:96
Alignment explanation
Indices: 62822286--62822504 Score: 269
Period size: 96 Copynumber: 2.3 Consensus size: 96
62822276 AAAGTGCATG
*
62822286 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCACGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCACGTATGG
** * * *
62822351 GACATGGCATCGATGATATTATATGTGCCTG
66 GACATGGCATCGACAATAGTATATGTGACTA
* * ** *
62822382 TGTAAGACCATGTCTGGGAAATGGCGTCGGCGATGATATGTGTGCTAGTGTAAGACCATGTATGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCACGTATGG
* * * *
62822447 GACATGGCATCGGCAATGGTATCTG-GATTCA
66 GACATGGCATCGACAATAGTATATGTGACT-A
* *
62822478 TGTAACACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
62822505 TGGTACTTTA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 2 0.02
96 101 0.98
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCTAGTGTAAGACCACGTATGG
GACATGGCATCGACAATAGTATATGTGACTA
Found at i:62839587 original size:70 final size:72
Alignment explanation
Indices: 62839473--62839623 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
62839463 GGGGAATCAT
* *
62839473 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
62839537 GATATCG
66 GATATCG
***
62839544 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
62839608 GATATCG
66 GATATCG
62839615 CACTTAGCA
1 CACTTAGCA
62839624 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 28 0.38
71 46 0.62
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (72 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
GATATCG
Found at i:62839727 original size:104 final size:103
Alignment explanation
Indices: 62839543--62839765 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
62839533 AATGGATATC
62839543 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
62839608 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
62839646 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
62839711 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
62839750 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
62839766 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:62840125 original size:29 final size:29
Alignment explanation
Indices: 62840092--62840155 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
62840082 TAATCCACCA
62840092 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
62840121 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
62840151 CCCAA
1 CCCAA
62840156 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:62840129 original size:30 final size:30
Alignment explanation
Indices: 62840099--62840155 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
62840089 CCACCCAACT
62840099 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
62840128 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
62840156 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:62847151 original size:72 final size:71
Alignment explanation
Indices: 62847012--62847164 Score: 245
Period size: 72 Copynumber: 2.1 Consensus size: 71
62847002 GGGGAATCAT
*
62847012 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAATATA-AATG
62847077 GATATCG
65 GATATCG
**
62847084 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAT-GGT
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAA-ATATAAAT
62847148 GGATATCG
64 GGATATCG
62847156 CACTTAGCA
1 CACTTAGCA
62847165 CCACCAATGA
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
72 63 0.83
73 9 0.12
74 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAATATAAATGG
ATATCG
Found at i:62847260 original size:102 final size:104
Alignment explanation
Indices: 62847083--62847304 Score: 360
Period size: 102 Copynumber: 2.2 Consensus size: 104
62847073 AATGGATATC
62847083 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
62847148 GGATATCGCACTTAGCACCACCAATGAA-CCGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAATCCGGGAATCA
62847186 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
62847250 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAATCCGGGAATCA
**
62847289 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
62847305 TTTATTTACA
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
102 70 0.63
103 41 0.37
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAATCCGGGAATCA
Found at i:62852298 original size:48 final size:48
Alignment explanation
Indices: 62852220--62852639 Score: 440
Period size: 48 Copynumber: 8.8 Consensus size: 48
62852210 ACAGTGCTAA
* * * *
62852220 ATGTGCCGGTGTAAGACCATCTCTGAGACATGGCATCGATGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
**
62852268 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGGGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * * *
62852316 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATTGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* *
62852364 GTGTGCCTA-CGTAAGACCATGTCTGGGACATGGCATC-AGCGATGATAT
1 ATGTGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATAT
* * *
62852412 CTGTGCCTA-TGTAAGACCATGTTTGGGACATGGCATCGATGATGATAT
1 ATGTGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * * *
62852460 GTGTGCCAGTGTAAGACCATGTTTGGGACATGGCAT-TAGCAATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATAT
* * * * *
62852508 ATGTGCCTGTGTATGACCATGTTTGGGACATGGCAT-TAGTGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATAT
* * *
62852556 GTGTGCCAGTATAAGACCATGTCTAGGACATGGCATC-AGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATAT
* * * * *
62852604 GTGGGTTCA-TGTAAGACTATGTCGGGGACATGGCAT
1 ATGTG-CCAGTGTAAGACCATGTCTGGGACATGGCAT
62852640 TCATACATTA
Statistics
Matches: 324, Mismatches: 41, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.01
48 319 0.98
49 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (48 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
Found at i:62852384 original size:96 final size:96
Alignment explanation
Indices: 62852220--62852603 Score: 556
Period size: 96 Copynumber: 4.0 Consensus size: 96
62852210 ACAGTGCTAA
* * * * *
62852220 ATGTGCCGGTGTAAGACCATCTCTGAGACATGGCATCGATGATGATATATGTGCCAGTGTAAGAC
1 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGATGATGATATGTGTGCCAGTGTAAGAC
* *
62852285 CATGTCTGGGACATGGCATCGGGGATGATAT
66 CATGTCTGGGACATGGCATCAGCGATGATAT
* ** *
62852316 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATTGGCGATGATATGTGTGCCTA-CGTAAGA
1 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGATGATGATATGTGTGCC-AGTGTAAGA
62852380 CCATGTCTGGGACATGGCATCAGCGATGATAT
65 CCATGTCTGGGACATGGCATCAGCGATGATAT
* *
62852412 CTGTGCCTATGTAAGACCATGTTTGGGACATGGCATCGATGATGATATGTGTGCCAGTGTAAGAC
1 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGATGATGATATGTGTGCCAGTGTAAGAC
* * *
62852477 CATGTTTGGGACATGGCATTAGCAATGATAT
66 CATGTCTGGGACATGGCATCAGCGATGATAT
* * *
62852508 ATGTGCCTGTGTATGACCATGTTTGGGACATGGCAT-TAGTGATGATATGTGTGCCAGTATAAGA
1 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGA-TGATGATATGTGTGCCAGTGTAAGA
*
62852572 CCATGTCTAGGACATGGCATCAGCGATGATAT
65 CCATGTCTGGGACATGGCATCAGCGATGATAT
62852604 GTGGGTTCAT
Statistics
Matches: 256, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
95 2 0.01
96 253 0.99
97 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGATGATGATATGTGTGCCAGTGTAAGAC
CATGTCTGGGACATGGCATCAGCGATGATAT
Found at i:62852481 original size:144 final size:144
Alignment explanation
Indices: 62852230--62852640 Score: 524
Period size: 144 Copynumber: 2.9 Consensus size: 144
62852220 ATGTGCCGGT
* *
62852230 GTAAGACCATCTCTGAGACATGGCATC-GATGATGATATATGTGCCAGTGTAAGACCATGTCTGG
1 GTAAGACCATGTCTGGGACATGGCATCAG-TGATGATATATGTGCCAGTGTAAGACCATGTCTGG
** * * * *
62852294 GACATGGCATCGGGGATGATATATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATTGGCGAT
65 GACATGGCATCGACGATGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATTAGCAAT
*
62852359 GATATGTGTGCCTAC
130 GATATATGTGCCTAC
* * *
62852374 GTAAGACCATGTCTGGGACATGGCATCAGCGATGATATCTGTGCCTA-TGTAAGACCATGTTTGG
1 GTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCC-AGTGTAAGACCATGTCTGG
*
62852438 GACATGGCATCGATGATGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATTAGCAAT
65 GACATGGCATCGACGATGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATTAGCAAT
**
62852503 GATATATGTGCCTGT
130 GATATATGTGCCTAC
* * * * * *
62852518 GTATGACCATGTTTGGGACATGGCATTAGTGATGATATGTGTGCCAGTATAAGACCATGTCTAGG
1 GTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCAGTGTAAGACCATGTCTGGG
* * * **
62852583 ACATGGCATC-AGCGATGATATGTGGGTTCA-TGTAAGACTATGTCGGGGACATGGCATT
66 ACATGGCATCGA-CGATGATATGTGTG-CCAGTGTAAGACCATGTTTGGGACATGGCATT
62852641 CATACATTAA
Statistics
Matches: 234, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
143 2 0.01
144 228 0.97
145 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (144 bp):
GTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGACGATGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATTAGCAATG
ATATATGTGCCTAC
Found at i:62855024 original size:20 final size:21
Alignment explanation
Indices: 62854982--62855024 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
62854972 ATTTTTATGA
*
62854982 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
62855003 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
62855023 TT
1 TT
62855025 TGTTCAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:62866429 original size:49 final size:49
Alignment explanation
Indices: 62866370--62866615 Score: 249
Period size: 49 Copynumber: 5.0 Consensus size: 49
62866360 GTAGACAAGG
* * *
62866370 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
62866419 TTATCCGGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
** * * * * *
62866469 CCATTTGATACACGTAGTAGCCTGCACCTAGTACTACACACGTGATCTAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* ** * * *
62866519 GTTATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAA
1 -TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * *
62866569 GTATCTAGTACACGTAGTACCCTACACTTAGTACTACACACGTGACC
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
62866616 TCACTATAGA
Statistics
Matches: 156, Mismatches: 38, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 77 0.49
50 45 0.29
51 34 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:62877739 original size:51 final size:50
Alignment explanation
Indices: 62877664--62877761 Score: 187
Period size: 51 Copynumber: 1.9 Consensus size: 50
62877654 ACTTGATCCA
62877664 TAGAAACCCTAAGTTATATTATTATCCATCTCGAGACTAACAACGTCCCG
1 TAGAAACCCTAAGTTATATTATTATCCATCTCGAGACTAACAACGTCCCG
62877714 TAGAAATCCCTAAGTTATATTATTATCCATCTCGAGACTAACAACGTC
1 TAGAAA-CCCTAAGTTATATTATTATCCATCTCGAGACTAACAACGTC
62877762 TAACCCTAGG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 6 0.13
51 41 0.87
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (50 bp):
TAGAAACCCTAAGTTATATTATTATCCATCTCGAGACTAACAACGTCCCG
Found at i:62882531 original size:55 final size:55
Alignment explanation
Indices: 62882472--62882663 Score: 136
Period size: 55 Copynumber: 3.5 Consensus size: 55
62882462 CAGTTGGTCA
*
62882472 GCACGGGTATGTCACACGCCCGTGTTAATTTGATAGGTTTGGCCACGATTTCCAG
1 GCACGGGTATGTCACACGCCCGTGTTAATTTGATAGGTTTGGCCACGGTTTCCAG
* * * * * ** ** * * *
62882527 GCACGGGTGTGTCGCACTCCCATTTTGTTTTGGCAGGTTTGACCATGGTTGCTC-G
1 GCACGGGTATGTCACACGCCCGTGTTAATTTGATAGGTTTGGCCACGGTTTC-CAG
* * * ** *
62882582 GTACGGG-AGTGCCACACGCTCGTGTTAATTTTGATAGGTTCAGCTACGGTTTCCAG
1 GCACGGGTA-TGTCACACGCCCGTGTTAA-TTTGATAGGTTTGGCCACGGTTTCCAG
** * *
62882638 GCACGGGCGTGTCACACACCGGTGTT
1 GCACGGGTATGTCACACGCCCGTGTT
62882664 GTTTTGGCAG
Statistics
Matches: 95, Mismatches: 37, Indels: 9
0.67 0.26 0.06
Matches are distributed among these distances:
55 58 0.61
56 37 0.39
ACGTcount: A:0.17, C:0.24, G:0.30, T:0.30
Consensus pattern (55 bp):
GCACGGGTATGTCACACGCCCGTGTTAATTTGATAGGTTTGGCCACGGTTTCCAG
Found at i:62885957 original size:8 final size:8
Alignment explanation
Indices: 62885941--62885970 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
62885931 TTGTTTTAAC
62885941 TAACTAAT
1 TAACTAAT
*
62885949 TAACCAAT
1 TAACTAAT
62885957 TAACTAAT
1 TAACTAAT
62885965 TAACTA
1 TAACTA
62885971 GAAGTACTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (8 bp):
TAACTAAT
Found at i:62890078 original size:21 final size:18
Alignment explanation
Indices: 62890052--62890096 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
62890042 TCTTAGTGAT
62890052 ATGGTTCATGATTGCTTGAGA
1 ATGGTTCATGA-T--TTGAGA
*
62890073 ATGGTTGATGATTTGAGA
1 ATGGTTCATGATTTGAGA
62890091 ATGGTT
1 ATGGTT
62890097 GTGCTTGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 12 0.52
20 1 0.04
21 10 0.43
ACGTcount: A:0.24, C:0.04, G:0.31, T:0.40
Consensus pattern (18 bp):
ATGGTTCATGATTTGAGA
Found at i:62892516 original size:13 final size:13
Alignment explanation
Indices: 62892490--62892527 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
62892480 TTGCTTTAGT
*
62892490 TTAG-TTAGTTAA
1 TTAGTTTAGTAAA
62892502 TTAGTTTAGTAAA
1 TTAGTTTAGTAAA
*
62892515 TTAGTTTAATAAA
1 TTAGTTTAGTAAA
62892528 CAACCACTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (13 bp):
TTAGTTTAGTAAA
Found at i:62895653 original size:46 final size:47
Alignment explanation
Indices: 62895545--62895961 Score: 314
Period size: 46 Copynumber: 8.8 Consensus size: 47
62895535 ACTACATTAT
* *
62895545 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAACATCGAGAC
* * *
62895593 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAACCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATCGAGAC
* * * *
62895639 GTA-ATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGGC
1 G-AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAACATCGAGAC
* * *
62895687 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAACCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATCGAGAC
* * * *
62895733 GTA-ATCCAGTCTAAGACATGTCTGGGACATGGCATCGACA-CGTATA-
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATCG-AGAC
* * * ** * *
62895779 GAGGTGTCAGTGTAAAACCATGTCTGGGACATGGCATCGGCA-CGAATATGT
1 GA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAACATCG-AGA--C
* * * * **
62895830 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAACATCGA-GAC
* * * ** *
62895879 AATAGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACGT-GATG--
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAACATCGA-GAC
62895925 GATGAGCCAGTGTAAGACATGTCTGGGACATGGCATC
1 GA-GAGCCAGTGTAAGACATGTCTGGGACATGGCATC
62895962 GGTATTATAC
Statistics
Matches: 298, Mismatches: 55, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.00
46 83 0.28
47 74 0.25
48 69 0.23
49 33 0.11
50 33 0.11
51 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATCGAGAC
Found at i:62895664 original size:94 final size:94
Alignment explanation
Indices: 62895550--62895772 Score: 421
Period size: 94 Copynumber: 2.4 Consensus size: 94
62895540 ATTATGAGAG
62895550 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTC
62895615 TGGGACATGCATCAACCTCGAGATGTAAT
66 TGGGACATGCATCAACCTCGAGATGTAAT
*
62895644 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGGCGAGAGCTAGTGTAAGACATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTC
62895709 TGGGACATGCATCAACCTCGAGATGTAAT
66 TGGGACATGCATCAACCTCGAGATGTAAT
*
62895738 CCAGTCTAAGA-CATGTCTGGGACATGGCATCGACA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
62895773 CGTATAGAGG
Statistics
Matches: 127, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
93 24 0.19
94 103 0.81
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (94 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTC
TGGGACATGCATCAACCTCGAGATGTAAT
Found at i:62895801 original size:94 final size:93
Alignment explanation
Indices: 62895550--62895863 Score: 404
Period size: 94 Copynumber: 3.3 Consensus size: 93
62895540 ATTATGAGAG
62895550 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT-AGACGAGAGCTAGTGTAAGACATGTC
62895615 TGGGACATGCATCAACCTCGAGATGTAAT
65 TGGGACATGCATCAACCTCGAGATGTAAT
*
62895644 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGGCGAGAGCTAGTGTAAGACATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT-AGACGAGAGCTAGTGTAAGACATGTC
62895709 TGGGACATGCATCAACCTCGAGATGTAAT
65 TGGGACATGCATCAACCTCGAGATGTAAT
* * *
62895738 CCAGTCTAAGA-CATGTCTGGGACATGGCATCGACACGTATAGA-G-GTG-TCAGTGTAAAACCA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACA--T-TAGACGAGAGCT-AGTGTAAGA-CA
** * * *
62895799 TGTCTGGGACATGGCATC-GGCACGAATATGTGAGAG
61 TGTCTGGGACAT-GCATCAACCTCG-AGATGT-A-AT
*
62895835 CTAGTGTAAGACCATGTCTGGGACATGGC
1 CCAGTGTAAGACCATGTCTGGGACATGGC
62895864 GTCAGCCTCG
Statistics
Matches: 198, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
92 1 0.01
93 34 0.17
94 121 0.61
95 13 0.07
96 2 0.01
97 10 0.05
98 17 0.09
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGACGAGAGCTAGTGTAAGACATGTCT
GGGACATGCATCAACCTCGAGATGTAAT
Found at i:62905467 original size:49 final size:49
Alignment explanation
Indices: 62905409--62905539 Score: 199
Period size: 49 Copynumber: 2.7 Consensus size: 49
62905399 CTGGTACGCA
* * *
62905409 TAGTAGCCTGCACATAGTACTACACATGCGGCCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAAACG
* * *
62905458 TAGTAGCCTGCACTTAATACTACACACGTGACCAATTATCCGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAAACG
*
62905507 TAGTAGCCTGCAGTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
62905540 TCACAATAGA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAAACG
Found at i:62907686 original size:15 final size:15
Alignment explanation
Indices: 62907664--62907726 Score: 74
Period size: 15 Copynumber: 4.1 Consensus size: 15
62907654 CAAGAAAATT
62907664 GAATAAAGAAATCCAA
1 GAATAAAGAAA-CCAA
*
62907680 G-ATAAAGAAACCCA
1 GAATAAAGAAACCAA
* *
62907694 GAATAAAGAAGCCCA
1 GAATAAAGAAACCAA
62907709 GAATAAAGAAACCCAA
1 GAATAAAGAAA-CCAA
62907725 GA
1 GA
62907727 TACGATACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 4 0.10
15 31 0.76
16 6 0.15
ACGTcount: A:0.59, C:0.17, G:0.16, T:0.08
Consensus pattern (15 bp):
GAATAAAGAAACCAA
Found at i:62907700 original size:30 final size:30
Alignment explanation
Indices: 62907664--62907723 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62907654 CAAGAAAATT
*
62907664 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
1 GAATAAAG-AAGCCAAGAATAAAGAAACCCA
*
62907694 GAATAAAGAAGCCCAGAATAAAGAAACCCA
1 GAATAAAGAAGCCAAGAATAAAGAAACCCA
62907724 AGATACGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.58, C:0.18, G:0.15, T:0.08
Consensus pattern (30 bp):
GAATAAAGAAGCCAAGAATAAAGAAACCCA
Found at i:62910647 original size:49 final size:50
Alignment explanation
Indices: 62910602--62910828 Score: 244
Period size: 49 Copynumber: 4.6 Consensus size: 50
62910592 CTGGTACGCA
* * *
62910602 TAGTAGCCTGTACATAGTACTACACATGCGA-CAAATTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAATTATCTGGTACATG
* * *
62910651 TAGTAGCCTGCACTTAGTAGTACACACGTGATC-AATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAATTATCTGGTACATG
* * * ** *
62910700 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAATTATCTGGTACATG
* * ***
62910750 TAGTAGCCTGCACTTAGTACTACACATGTGATCACAGTT-TTTAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCA-AATTATCT-GGTACATG
* *
62910801 TAATCGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
62910829 CGACCTCACA
Statistics
Matches: 149, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 72 0.48
50 46 0.31
51 31 0.21
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGATCAAATTATCTGGTACATG
Found at i:62910765 original size:99 final size:98
Alignment explanation
Indices: 62910602--62910783 Score: 265
Period size: 99 Copynumber: 1.8 Consensus size: 98
62910592 CTGGTACGCA
* * ** *
62910602 TAGTAGCCTGTACATAGTACTACACATGCGACAAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACAAACCATCTGATACATGTAGTAGCCTGCACTTA
*
62910667 GTAGTACACACGTGATCAATTATCCGGTACATG
66 GTACTACACACGTGATCAATTATCCGGTACATG
* * *
62910700 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CAAACCATCTGATACATGTAGTAGCCTGCACTT
*
62910765 AGTACTACACATGTGATCA
65 AGTACTACACACGTGATCA
62910784 CAGTTTTTAG
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
98 27 0.37
99 46 0.63
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (98 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACAAACCATCTGATACATGTAGTAGCCTGCACTTA
GTACTACACACGTGATCAATTATCCGGTACATG
Found at i:62912996 original size:15 final size:15
Alignment explanation
Indices: 62912978--62913016 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
62912968 TCTAAGATAG
62912978 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
*
62912993 AGAAACCCAGAGTAA
1 AGAAACCCAGAATAA
62913008 AGAAACCCA
1 AGAAACCCA
62913017 AGATACGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.23, G:0.15, T:0.05
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:62915034 original size:42 final size:43
Alignment explanation
Indices: 62914929--62915067 Score: 147
Period size: 43 Copynumber: 3.2 Consensus size: 43
62914919 ATGTGTTATT
* * *
62914929 ATGTAAGACCAC-GTCTGGGACATTGGCATTGATTTGTGATTTAT
1 ATGTAAGACC-CTGTCTGGGACATTGGCATTGATATATGATTT-C
* * * *
62914973 ATGTAAGACCATGTATGGGATATTGGCATCG-TATATGATTTC
1 ATGTAAGACCCTGTCTGGGACATTGGCATTGATATATGATTTC
* * * *
62915015 GTGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGATTAC
1 ATGTAAGACCCTGTCTGGGACATTGGCATTGATATATGATTTC
62915058 ATGTAAGACC
1 ATGTAAGACC
62915068 ACATCTAGGA
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 25 0.32
43 26 0.34
44 26 0.34
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
ATGTAAGACCCTGTCTGGGACATTGGCATTGATATATGATTTC
Found at i:62920435 original size:23 final size:23
Alignment explanation
Indices: 62920409--62920465 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
62920399 CTTTATAGTG
62920409 TATTTTATGATGCCTATGTGGCA
1 TATTTTATGATGCCTATGTGGCA
* * * * *
62920432 TATTCTATAAAGCTTTTGTGGCA
1 TATTTTATGATGCCTATGTGGCA
62920455 TATTTTATGAT
1 TATTTTATGAT
62920466 TCCTGTATGG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.47
Consensus pattern (23 bp):
TATTTTATGATGCCTATGTGGCA
Found at i:62920461 original size:46 final size:46
Alignment explanation
Indices: 62920409--62920497 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
62920399 CTTTATAGTG
* *
62920409 TATTTTATGATGCCTATGTGGCATATTCTATAAAGCTTTTGTGGCA
1 TATTTTATGATGCCTATATGGCATATTCTATAAAGCCTTTGTGGCA
* * * *
62920455 TATTTTATGATTCCTGTATGGTATATTCTGTAAAGCCTTTGTG
1 TATTTTATGATGCCTATATGGCATATTCTATAAAGCCTTTGTG
62920498 AATGCATGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.46
Consensus pattern (46 bp):
TATTTTATGATGCCTATATGGCATATTCTATAAAGCCTTTGTGGCA
Found at i:62920981 original size:23 final size:23
Alignment explanation
Indices: 62920955--62921012 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
62920945 TATAGTGTAT
62920955 TCTATGATGCCTATGTGGCATAC
1 TCTATGATGCCTATGTGGCATAC
* * * * *
62920978 TCTATAAAGCTTTTGTGGCATAT
1 TCTATGATGCCTATGTGGCATAC
*
62921001 TTTATGATGCCT
1 TCTATGATGCCT
62921013 GTATGGTATA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (23 bp):
TCTATGATGCCTATGTGGCATAC
Found at i:62920984 original size:543 final size:543
Alignment explanation
Indices: 62919956--62921040 Score: 2053
Period size: 543 Copynumber: 2.0 Consensus size: 543
62919946 TTATTGATGG
62919956 ATGCATGTATATATGAAGTATCGTAAGGGCTTTGCATGTTTACAAATGAGATATATGAGTTGTTG
1 ATGCATGTATATATGAAGTATCGTAAGGGCTTTGCATGTTTACAAATGAGATATATGAGTTGTTG
*
62920021 CATGAATAAGATGATGTGTGACATGTACGCATGTGAAATCATGTATGGAAGAGTTTGAATTTTTA
66 CATGAATAAGATGATGTGTGACATGTACGCATGTGAAATCATGTATGGAAGAGTATGAATTTTTA
*
62920086 AGGAGTGTGTGAATGATTCTGGGTAAGTGTGTTCTTTGTTAAATGAGTAAAACAATCATTTATAA
131 AAGAGTGTGTGAATGATTCTGGGTAAGTGTGTTCTTTGTTAAATGAGTAAAACAATCATTTATAA
* *
62920151 TACATGTGATAGGAAAGTACATTGCTAACCGGACTGGCAAATCACGACATGTAGATATGTGTAAT
196 TACATATGATAGGAAAGTACATTGCTAACCAGACTGGCAAATCACGACATGTAGATATGTGTAAT
*
62920216 ACCCTATGGTAGAGATCCATGGCATCATATGACAATAAAAATACTCATGTGTTGCCTGCGGTGAG
261 ACCCTATGGTAGAGACCCATGGCATCATATGACAATAAAAATACTCATGTGTTGCCTGCGGTGAG
* * *
62920281 ATGTAAACCAGACTGGTAGATCATGAAATGAAAATATGTACATGGCTATTTGGGAGAAACCTATG
326 ATGTAAACCAAACTAGTAGATCATGAAATGAAAATATGTACATGACTATTTGGGAGAAACCTATG
62920346 GCACCCTCTGAGATAGTCCTCTAGGACAGTATACACGTAATGTTCTGTAAAGCCTTTATAGTGTA
391 GCACCCTCTGAGATAGTCCTCTAGGACAGTATACACGTAATGTTCTGTAAAGCCTTTATAGTGTA
* * *
62920411 TTTTATGATGCCTATGTGGCATATTCTATAAAGCTTTTGTGGCATATTTTATGATTCCTGTATGG
456 TTCTATGATGCCTATGTGGCATACTCTATAAAGCTTTTGTGGCATATTTTATGATGCCTGTATGG
62920476 TATATTCTGTAAAGCCTTTGTGA
521 TATATTCTGTAAAGCCTTTGTGA
62920499 ATGCATGTATATATGAAGTATCGTAAGGGCTTTGCATGTTTACAAATGAGATATATGAGTTGTTG
1 ATGCATGTATATATGAAGTATCGTAAGGGCTTTGCATGTTTACAAATGAGATATATGAGTTGTTG
62920564 CATGAATAAGATGATGTGTGACATGTACGCATGTGAAATCATGTATGGAAGAGTATGAATTTTTA
66 CATGAATAAGATGATGTGTGACATGTACGCATGTGAAATCATGTATGGAAGAGTATGAATTTTTA
62920629 AAGAGTGTGTGAATGATTCTGGGTAAGTGTGTTCTTTGTTAAATGAGTAAAACAATCATTTATAA
131 AAGAGTGTGTGAATGATTCTGGGTAAGTGTGTTCTTTGTTAAATGAGTAAAACAATCATTTATAA
62920694 TACATATGATAGGAAAGTACATTGCTAACCAGACTGGCAAATCACGACATGTAGATATGTGTAAT
196 TACATATGATAGGAAAGTACATTGCTAACCAGACTGGCAAATCACGACATGTAGATATGTGTAAT
*
62920759 ACCCTATGGTAGAGACCCATGGCATCATATGACAATGAAAATACTCATGTGTTGCCTGCGGTGAG
261 ACCCTATGGTAGAGACCCATGGCATCATATGACAATAAAAATACTCATGTGTTGCCTGCGGTGAG
62920824 ATGTAAACCAAACTAGTAGATCATGAAATGAAAATATGTACATGACTATTTGGGAGAAACCTATG
326 ATGTAAACCAAACTAGTAGATCATGAAATGAAAATATGTACATGACTATTTGGGAGAAACCTATG
*
62920889 GCACCCTCTGAGATAGTCCTCTAGGATAGTATACACGTAATGTTCTGTAAAGCCTTTATAGTGTA
391 GCACCCTCTGAGATAGTCCTCTAGGACAGTATACACGTAATGTTCTGTAAAGCCTTTATAGTGTA
62920954 TTCTATGATGCCTATGTGGCATACTCTATAAAGCTTTTGTGGCATATTTTATGATGCCTGTATGG
456 TTCTATGATGCCTATGTGGCATACTCTATAAAGCTTTTGTGGCATATTTTATGATGCCTGTATGG
62921019 TATATTCTGTAAAGCCTTTGTG
521 TATATTCTGTAAAGCCTTTGTG
62921041 GTGTATTCTG
Statistics
Matches: 529, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
543 529 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (543 bp):
ATGCATGTATATATGAAGTATCGTAAGGGCTTTGCATGTTTACAAATGAGATATATGAGTTGTTG
CATGAATAAGATGATGTGTGACATGTACGCATGTGAAATCATGTATGGAAGAGTATGAATTTTTA
AAGAGTGTGTGAATGATTCTGGGTAAGTGTGTTCTTTGTTAAATGAGTAAAACAATCATTTATAA
TACATATGATAGGAAAGTACATTGCTAACCAGACTGGCAAATCACGACATGTAGATATGTGTAAT
ACCCTATGGTAGAGACCCATGGCATCATATGACAATAAAAATACTCATGTGTTGCCTGCGGTGAG
ATGTAAACCAAACTAGTAGATCATGAAATGAAAATATGTACATGACTATTTGGGAGAAACCTATG
GCACCCTCTGAGATAGTCCTCTAGGACAGTATACACGTAATGTTCTGTAAAGCCTTTATAGTGTA
TTCTATGATGCCTATGTGGCATACTCTATAAAGCTTTTGTGGCATATTTTATGATGCCTGTATGG
TATATTCTGTAAAGCCTTTGTGA
Found at i:62921009 original size:46 final size:46
Alignment explanation
Indices: 62920952--62921041 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
62920942 CTTTATAGTG
* *
62920952 TATTCTATGATGCCTATGTGGCATACTCTATAAAGCTTTTGTGGCA
1 TATTCTATGATGCCTATATGGCATACTCTATAAAGCCTTTGTGGCA
* * * * *
62920998 TATTTTATGATGCCTGTATGGTATATTCTGTAAAGCCTTTGTGG
1 TATTCTATGATGCCTATATGGCATACTCTATAAAGCCTTTGTGG
62921042 TGTATTCTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.42
Consensus pattern (46 bp):
TATTCTATGATGCCTATATGGCATACTCTATAAAGCCTTTGTGGCA
Found at i:62922771 original size:20 final size:20
Alignment explanation
Indices: 62922746--62922784 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
62922736 AATTTATACA
62922746 GAGGCACCGGAA-TGTAAACG
1 GAGGCACC-GAAGTGTAAACG
62922766 GAGGCACCGAAGTGTAAAC
1 GAGGCACCGAAGTGTAAAC
62922785 TCGTACAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.36, C:0.21, G:0.33, T:0.10
Consensus pattern (20 bp):
GAGGCACCGAAGTGTAAACG
Found at i:62924708 original size:21 final size:21
Alignment explanation
Indices: 62924682--62924724 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
62924672 TAAAAGACTC
62924682 AATGCACACATTTTATTAGGT
1 AATGCACACATTTTATTAGGT
62924703 AATGCACACATTTTATTAGGT
1 AATGCACACATTTTATTAGGT
62924724 A
1 A
62924725 TAAGTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (21 bp):
AATGCACACATTTTATTAGGT
Found at i:62927244 original size:17 final size:17
Alignment explanation
Indices: 62927224--62927257 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
62927214 AAAGAAAATG
*
62927224 CTTTAGAATACATCATA
1 CTTTAGAATACAGCATA
*
62927241 CTTTCGAATACAGCATA
1 CTTTAGAATACAGCATA
62927258 TGACATTTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (17 bp):
CTTTAGAATACAGCATA
Found at i:62934455 original size:26 final size:26
Alignment explanation
Indices: 62934404--62934481 Score: 111
Period size: 26 Copynumber: 2.9 Consensus size: 26
62934394 TACCAAATTA
* *
62934404 CCCCTAAAGGGTAAAATGACTCTTTTG
1 CCCCTCAAGGGT-AAATGACTATTTTG
62934431 CCCCTCAAGGGTAAATGACTATTTTG
1 CCCCTCAAGGGTAAATGACTATTTTG
*
62934457 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTCAAGGGTAAATGACT-ATTT
62934482 GTCTGTGATT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 32 0.68
27 15 0.32
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CCCCTCAAGGGTAAATGACTATTTTG
Found at i:62934810 original size:32 final size:33
Alignment explanation
Indices: 62934758--62934860 Score: 122
Period size: 32 Copynumber: 3.2 Consensus size: 33
62934748 TCATATGGGT
* * *
62934758 TTGATATTGAAATGGGCTAGGCCCAACTGATAC
1 TTGATTTTGATATGGGCTAGGCCCAATTGATAC
62934791 TTG-TTTTGATATGGGCTAGGCCCAATTGATA-
1 TTGATTTTGATATGGGCTAGGCCCAATTGATAC
* *
62934822 TTGATTCTGAGT-TGGGCTAGGCCGAATTGATAC
1 TTGATTTTGA-TATGGGCTAGGCCCAATTGATAC
62934855 TGTGAT
1 T-TGAT
62934861 GGGTTGAGAC
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
31 3 0.05
32 49 0.80
33 5 0.08
34 4 0.07
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (33 bp):
TTGATTTTGATATGGGCTAGGCCCAATTGATAC
Found at i:62943209 original size:53 final size:53
Alignment explanation
Indices: 62943109--62943265 Score: 131
Period size: 53 Copynumber: 2.9 Consensus size: 53
62943099 TTCCTTTTTA
* * **
62943109 AACTTACCATTTCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATG
1 AACTAACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* *
62943162 AACTAACCATTGCCATGGT-TTGGCATGGTCTTACATAGG-ATCTTTGCCTTATAG
1 AACTAACCATTGCCAT-GTCTTGACATGGTCTTACAT-GGTATCCTTGCCTTAT-G
** * * * * * *
62943216 TAGTTTATCAATGCCATGTTTTGACAT-GTCTTACATGATTTCCTTGCCTT
1 -AACTAACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT
62943266 GTAAAACTTA
Statistics
Matches: 83, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
53 41 0.49
54 25 0.30
55 17 0.20
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (53 bp):
AACTAACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:62945178 original size:33 final size:33
Alignment explanation
Indices: 62945135--62945201 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
62945125 TTACCCATGT
*
62945135 TCATACAAGTCCATATATTTCATTTATATCACA
1 TCATACAAGTCCATACATTTCATTTATATCACA
* *
62945168 TCATAGAAGTCCATACATTTCATTTATTTCACA
1 TCATACAAGTCCATACATTTCATTTATATCACA
62945201 T
1 T
62945202 TTTAGTCCCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.40
Consensus pattern (33 bp):
TCATACAAGTCCATACATTTCATTTATATCACA
Found at i:62946106 original size:23 final size:23
Alignment explanation
Indices: 62946080--62946138 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
62946070 AGGGAATTAC
*
62946080 AGAATAAGCCATAAAGGCATCAT
1 AGAATAAGCCACAAAGGCATCAT
*
62946103 AGAATATGCCACAAAGGCATCAT
1 AGAATAAGCCACAAAGGCATCAT
*
62946126 AGAATACGCCACA
1 AGAATAAGCCACA
62946139 GAGGGTGCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (23 bp):
AGAATAAGCCACAAAGGCATCAT
Found at i:62948270 original size:27 final size:27
Alignment explanation
Indices: 62948239--62948300 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
62948229 TAGTTTACCA
*
62948239 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAACTACCCCCGATTTACAG
*** * *
62948266 AATTACCGTTCTACCCTCGATTTATAG
1 AATTACCAAACTACCCCCGATTTACAG
62948293 AATTACCA
1 AATTACCA
62948301 TTTTACCCTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAACTACCCCCGATTTACAG
Found at i:62948307 original size:27 final size:27
Alignment explanation
Indices: 62948250--62948352 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
62948240 ATTACCAAAG
* *
62948250 TACCCCCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCGTTT
* *
62948277 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
62948304 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
62948331 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
62948353 TAAAATACCC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:62948361 original size:27 final size:27
Alignment explanation
Indices: 62948331--62948716 Score: 120
Period size: 27 Copynumber: 14.3 Consensus size: 27
62948321 ATTACCGTTT
**
62948331 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
62948358 TACCCCTTG-TTTGTAAAATTACTAAAA
1 TA-CCCTTGATTTGTAAAATTACTAAAA
* * *
62948385 TACACCCTAATTTGTAAAATTACTGAAA
1 TAC-CCTTGATTTGTAAAATTACTAAAA
* ** * * *
62948413 TACCCTCGACCTGTAAAAAATACCAAAG
1 TACCCTTGATTTGT-AAAATTACTAAAA
* * * ***
62948441 TACCCTCGATTTATAGAATTACT-TTT
1 TACCCTTGATTTGTAAAATTACTAAAA
** ** * ****
62948467 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTTGATTTGTAAAATTACTAAAA
* ** * ***
62948494 TACCCCTGATTTACAAAATTACCATTT
1 TACCCTTGATTTGTAAAATTACTAAAA
* * *
62948521 TACCCTCGA-TTGTGAAATTACTGAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
** * *
62948547 TACTCC-T-ATAGGGTAGAATTACCAAAA
1 TAC-CCTTGAT-TTGTAAAATTACTAAAA
* * * *
62948574 CACCCCT-AGTTTGTAAACTTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACTAAAA
* * * **
62948601 TACCATTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
** *
62948628 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
* **
62948655 TACCCCTGATTTACAAAATTAC-AGAAA
1 TACCCTTGATTTGTAAAATTACTA-AAA
* * * *
62948682 TACCCTTGATTTTTAGATTTACCAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
*
62948709 CACCCTTG
1 TACCCTTG
62948717 TAGGATGAAA
Statistics
Matches: 269, Mismatches: 77, Indels: 26
0.72 0.21 0.07
Matches are distributed among these distances:
25 1 0.00
26 37 0.14
27 183 0.68
28 48 0.18
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACTAAAA
Found at i:62948362 original size:54 final size:54
Alignment explanation
Indices: 62948232--62948363 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
62948222 AATACTTTAG
* * *
62948232 TTTACCAAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTCTACCCTCGA
1 TTTACAAAATTACCAAAATACCCCCAATTTACAGAATTACCGTTCTACCCTCGA
* * *** * * * *
62948286 TTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACCAAAATACCCCCAATTTACAGAATTACCGTTCTACCCTCGA
*
62948340 TTTACAAAATTACTAAAATACCCC
1 TTTACAAAATTACCAAAATACCCC
62948364 TTGTTTGTAA
Statistics
Matches: 60, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCCCAATTTACAGAATTACCGTTCTACCCTCGA
Found at i:62948392 original size:28 final size:27
Alignment explanation
Indices: 62948345--62948417 Score: 110
Period size: 28 Copynumber: 2.7 Consensus size: 27
62948335 CTTGATTTAC
**
62948345 AAAATTACTAAAATACCCCTTGTTTGT
1 AAAATTACTAAAATACCCCTAATTTGT
62948372 AAAATTACTAAAATACACCCTAATTTGT
1 AAAATTACTAAAATAC-CCCTAATTTGT
*
62948400 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
62948418 TCGACCTGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
27 18 0.43
28 24 0.57
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTAATTTGT
Found at i:62948674 original size:54 final size:54
Alignment explanation
Indices: 62948583--62948687 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
62948573 ACACCCCTAG
* * * *** *
62948583 TTTGTAAACTTACCAAAATACCATTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
*
62948637 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCT
62948688 TGATTTTTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
Found at i:62948777 original size:27 final size:27
Alignment explanation
Indices: 62948734--62948807 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
62948724 AAATGACTAA
*
62948734 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
62948761 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
62948788 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
62948808 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:62949542 original size:20 final size:20
Alignment explanation
Indices: 62949517--62949603 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
62949507 GATATGATAT
*
62949517 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
62949537 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
62949557 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
62949577 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
62949597 ACATGAT
1 ACATGAT
62949604 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:62949731 original size:52 final size:51
Alignment explanation
Indices: 62949653--62949788 Score: 224
Period size: 52 Copynumber: 2.7 Consensus size: 51
62949643 GAGGAAGTGC
62949653 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
62949705 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
62949756 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
62949789 AGGCCTCCAA
Statistics
Matches: 82, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 24 0.29
52 36 0.44
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:62949750 original size:25 final size:26
Alignment explanation
Indices: 62949653--62949788 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
62949643 GAGGAAGTGC
62949653 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
62949679 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62949705 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
62949731 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62949756 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
62949779 AAAAGAGGCT
1 AAAAG-GGCT
62949789 AGGCCTCCAA
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 29 0.29
26 58 0.59
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62949968 original size:42 final size:42
Alignment explanation
Indices: 62949921--62950012 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
62949911 TAGTCTCCCC
* ** *
62949921 AAATGGGCTTGCATACATTCAATGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCAATGACATTACATATGATATTG
* *
62949963 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCAATGACATTACATATGATATTG
62950005 AAATGGGC
1 AAATGGGC
62950013 CTATTACAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCAATGACATTACATATGATATTG
Found at i:62950061 original size:31 final size:31
Alignment explanation
Indices: 62950023--62950101 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
62950013 CTATTACAGT
62950023 AAAGGCTTCGGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCTAGTGAAATGATTTATGA
* *
62950054 AAAGGCTTCGGCCGAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGAAATGATTTATGA
62950085 AAAGGCTTCGGCCTAGT
1 AAAGGCTTCGGCCTAGT
62950102 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGAAATGATTTATGA
Found at i:62965615 original size:24 final size:24
Alignment explanation
Indices: 62965571--62965616 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
62965561 ATAAGTTGAG
**
62965571 AAGAATTTATTTTGATTATAAGTT
1 AAGAATTTATTTTGAGGATAAGTT
62965595 AAGAATTT-TTCTTGAGGATAAG
1 AAGAATTTATT-TTGAGGATAAG
62965617 CAAATGCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.43
Consensus pattern (24 bp):
AAGAATTTATTTTGAGGATAAGTT
Found at i:62977120 original size:39 final size:40
Alignment explanation
Indices: 62976874--62977097 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
62976864 TATTCGAATG
* *
62976874 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
62976915 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
62976955 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
62976995 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
62977035 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
62977074 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62977098 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 93 0.59
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:62985284 original size:39 final size:40
Alignment explanation
Indices: 62985038--62985261 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
62985028 TATTCGAATG
* *
62985038 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
62985079 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
62985119 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
62985159 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
62985199 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
62985238 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62985262 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 93 0.59
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:62995503 original size:26 final size:28
Alignment explanation
Indices: 62995473--62995534 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 28
62995463 TAAGATTTAA
*
62995473 TAAAAATTATTAAT-AATTCAAT-GAAT
1 TAAAAATTATTAATCAATTCAATAAAAT
* *
62995499 TAAAAA-AATTAATCAATTGAATAAAAT
1 TAAAAATTATTAATCAATTCAATAAAAT
62995526 TAAAAATTA
1 TAAAAATTA
62995535 AGAAAAAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 6 0.21
26 13 0.45
27 9 0.31
28 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (28 bp):
TAAAAATTATTAATCAATTCAATAAAAT
Found at i:62996439 original size:47 final size:47
Alignment explanation
Indices: 62996370--62996464 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
62996360 TTTTTAACTA
62996370 AAAACATTTATTCTAGAAGCCTTTTGAAAATATTTACAAAAAAAGGC
1 AAAACATTTATTCTAGAAGCCTTTTGAAAATATTTACAAAAAAAGGC
62996417 AAAACATTTATTCTAGAAGCCTTTTGAAAATATTTACAAAAAAAGGC
1 AAAACATTTATTCTAGAAGCCTTTTGAAAATATTTACAAAAAAAGGC
62996464 A
1 A
62996465 TCTAGTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (47 bp):
AAAACATTTATTCTAGAAGCCTTTTGAAAATATTTACAAAAAAAGGC
Found at i:62998378 original size:25 final size:25
Alignment explanation
Indices: 62998350--62998415 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
62998340 AATTAAAATT
* * *
62998350 AGAATTAGAATTAGAATTAGGTGAC
1 AGAATTAGAATCAGAATCAGGTAAC
*
62998375 AGAATTAGAATCAGTATCAGGTAAC
1 AGAATTAGAATCAGAATCAGGTAAC
*
62998400 ATAATTAG-ATCAGAAT
1 AGAATTAGAATCAGAAT
62998416 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
24 7 0.20
25 28 0.80
ACGTcount: A:0.45, C:0.08, G:0.20, T:0.27
Consensus pattern (25 bp):
AGAATTAGAATCAGAATCAGGTAAC
Found at i:62998380 original size:19 final size:19
Alignment explanation
Indices: 62998318--62998385 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
62998308 AAATGAGAAT
* *
62998318 CAGAATCAGAATCAGGTGA
1 CAGAATTAGAATTAGGTGA
* *
62998337 CAGAATTAAAATTA-G-AA
1 CAGAATTAGAATTAGGTGA
*
62998354 TTAGAATTAGAATTAGGTGA
1 -CAGAATTAGAATTAGGTGA
62998374 CAGAATTAGAAT
1 CAGAATTAGAAT
62998386 CAGTATCAGG
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
17 1 0.03
18 13 0.34
19 23 0.61
20 1 0.03
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.25
Consensus pattern (19 bp):
CAGAATTAGAATTAGGTGA
Found at i:62998380 original size:37 final size:37
Alignment explanation
Indices: 62998301--62998381 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
62998291 TATCAAAACT
*
62998301 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATTAAAATGAGAATCAGAATCAGAATCAGGTGAC
* * * *
62998338 AGAATTAAAATTAGAATTAGAATTAGAATTAGGTGAC
1 AGAATTAAAATGAGAATCAGAATCAGAATCAGGTGAC
62998375 AGAATTA
1 AGAATTA
62998382 GAATCAGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.23
Consensus pattern (37 bp):
AGAATTAAAATGAGAATCAGAATCAGAATCAGGTGAC
Found at i:62998385 original size:6 final size:6
Alignment explanation
Indices: 62998338--62998369 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
62998328 ATCAGGTGAC
*
62998338 AGAATT AAAATT AGAATT AGAATT AGAATT AG
1 AGAATT AGAATT AGAATT AGAATT AGAATT AG
62998370 GTGACAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (6 bp):
AGAATT
Found at i:62998562 original size:26 final size:26
Alignment explanation
Indices: 62998533--62998615 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
62998523 AGCATGGCTG
*
62998533 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
62998559 CCAGATACATATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
62998586 CCAGAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
62998613 CCA
1 CCA
62998616 AAAATAGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:62998630 original size:27 final size:27
Alignment explanation
Indices: 62998567--62998640 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
62998557 CACCAGATAC
* *
62998567 ATATATTGTGGCAGAGCCACCAGAATAG
1 ATATA-TGTGGCAAAGCCACCAAAATAG
* *
62998595 ATATTTGTGGCATAGCCACCAAAAATAG
1 ATATATGTGGCAAAGCCACC-AAAATAG
62998623 ATA-ATGTGGCAAAGCCAC
1 ATATATGTGGCAAAGCCAC
62998641 TTAACAGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
27 27 0.68
28 13 0.32
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.22
Consensus pattern (27 bp):
ATATATGTGGCAAAGCCACCAAAATAG
Found at i:62998827 original size:22 final size:22
Alignment explanation
Indices: 62998799--62998858 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
62998789 GAAAATACGT
*
62998799 TTGGCACACAGCCATA-GTCAGG
1 TTGGCACAAAGCCATATGT-AGG
* *
62998821 TTGGCACAGAGTCATATGTAGG
1 TTGGCACAAAGCCATATGTAGG
*
62998843 TTGGCGCAAAGCCATA
1 TTGGCACAAAGCCATA
62998859 ATCAAAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 30 0.94
23 2 0.06
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATATGTAGG
Found at i:62999303 original size:27 final size:27
Alignment explanation
Indices: 62999240--62999382 Score: 205
Period size: 27 Copynumber: 5.3 Consensus size: 27
62999230 GGGGCAAAAT
* * *
62999240 GGTAATTTTACCCCACAAAGGGTATCTC
1 GGTAATTCTACCCTAC-AAGGGTATTTC
* *
62999268 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
62999295 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62999322 TGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
62999349 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
62999376 GGTAATT
1 GGTAATT
62999383 TTGTAAATCG
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 89 0.87
28 13 0.13
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:62999396 original size:27 final size:27
Alignment explanation
Indices: 62999312--62999653 Score: 178
Period size: 27 Copynumber: 12.7 Consensus size: 27
62999302 CTACCCTACA
* ** *
62999312 AGGGTATTTCTGTAATTTTAC-CCTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* ** *
62999339 AGGGTATTTCGGTAATTCTAC-CCTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
**
62999366 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** * * **
62999393 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
62999420 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
** *
62999447 AGGGTATTTCAATAATTTTACAAGTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
62999474 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
62999500 AGGGGCATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
62999527 AGGGGTATTTTGGTAATTTCACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
62999554 AGGGGTATTTTGGTAATTTTACAAA-CA
1 A-GGGTATTTCGGTAATTTTACAAATCG
*** *
62999581 AGGGGTATTTTAATAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
** * *
62999608 AGGGGTATTTTAGTAATTTTTCTAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
62999636 ATGGTATTTTGGTAATTT
1 AGGGTATTTCGGTAATTT
62999654 GGTAAACTAA
Statistics
Matches: 264, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.02
27 257 0.97
28 3 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:62999517 original size:54 final size:54
Alignment explanation
Indices: 62999459--62999653 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 54
62999449 GGTATTTCAA
* * * *
62999459 TAATTTTACAAGTCGA-GGGTATTTCAGTAATTTCACAAATTAGGGGCATTTTGG
1 TAATTTTACAA-ACGAGGGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGG
* * *
62999513 TAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACGAGGGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGG
* * * *
62999567 TAATTTTACAAACAAGGGGTATTTTAATAATTTTACAAACTAGGGGTATTTTAG
1 TAATTTTACAAACGAGGGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGG
* * * *
62999621 TAATTTTTCTAATCGA-TGGTATTTTGGTAATTT
1 TAATTTTAC-AAACGAGGGGTATTTTAGTAATTT
62999654 GGTAAACTAA
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.02
54 114 0.95
55 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
TAATTTTACAAACGAGGGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGG
Found at i:62999533 original size:81 final size:80
Alignment explanation
Indices: 62999427--62999653 Score: 249
Period size: 81 Copynumber: 2.8 Consensus size: 80
62999417 TCGAGGGTAC
* * * * **
62999427 TTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAAGTCGAGGGTATTTCAGTAATT
1 TTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTACAA-TCGAGGGTATTTTGGTAATT
**
62999491 TCACAAATTAGGGGCAT
64 TCACAAACAAGGGGCAT
* * * *
62999508 TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAATCGA-GGGTATTTTGGTAATTT
* *
62999573 TACAAACAAGGGGTAT
65 CACAAACAAGGGGCAT
** * *
62999589 TTTAATAATTTTACAAACTAGGGGTATTTTAGTAATTTTTCTAATCGATGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTAC-AATCGAGGGTATTTTGGTAATTT
62999654 GGTAAACTAA
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.02
81 111 0.92
82 8 0.07
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
TTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAATCGAGGGTATTTTGGTAATTTC
ACAAACAAGGGGCAT
Found at i:62999662 original size:54 final size:54
Alignment explanation
Indices: 62999421--62999653 Score: 211
Period size: 54 Copynumber: 4.3 Consensus size: 54
62999411 TGTAAATCGA
* * * * * * * *
62999421 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAAGTCGA-
1 GGGTATTTTGGTAATTTCACAAACTAG-GGGTATTTTAGTAATTTTACAA-ACAAG
** * * * *
62999475 GGGTATTTCAGTAATTTCACAAATTAGGGGCATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTTTACAAACAAG
* *
62999529 GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACAAG
1 GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTTTACAAACAAG
** * * * *
62999583 GGGTATTTTAATAATTTTACAAACTAGGGGTATTTTAGTAATTTTTCTAATCGA-
1 GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTTTAC-AAACAAG
*
62999637 TGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
62999654 GGTAAACTAA
Statistics
Matches: 147, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.01
54 137 0.93
55 8 0.05
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTTTACAAACAAG
Found at i:63018606 original size:17 final size:18
Alignment explanation
Indices: 63018584--63018617 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63018574 TTTCAGGCTT
63018584 TGTGGGC-CACACGGGCG
1 TGTGGGCTCACACGGGCG
*
63018601 TGTGGGCTCACATGGGC
1 TGTGGGCTCACACGGGC
63018618 CCGTAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
TGTGGGCTCACACGGGCG
Found at i:63019666 original size:13 final size:13
Alignment explanation
Indices: 63019648--63019685 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
63019638 AAGCACGATT
63019648 CACACGGGCGTGG
1 CACACGGGCGTGG
*
63019661 CACACGAGCGTGG
1 CACACGGGCGTGG
*
63019674 CACATGGGCGTG
1 CACACGGGCGTG
63019686 TCCCTGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.42, T:0.11
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:63030108 original size:47 final size:46
Alignment explanation
Indices: 63029951--63030311 Score: 227
Period size: 47 Copynumber: 7.7 Consensus size: 46
63029941 GATTTGTGCT
* * * * *
63029951 CCAGTGTAAGACGTGTCTGGGACATGCTTCGGCCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATAG
* * * **
63029997 CCAGTGTAAGACCACGTCTGGGGCATGGCATCGG-CAT-CTAGGCGAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATACTA--TGATAG
* * *
63030045 CTAGTTTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATAG
* * **
63030091 CCAGTGTAAGACCATGTCTGGGACATGGCACCGACACA-AAGATGAGT-G
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CATACTATGA-TAG
*
63030139 CCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-AGAGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ACTA-TGATAG
** * * * *
63030186 CCAGTGTAAGATGTGTCTGGGACACGCATCGGCTAAGAGT-TG-T-G
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-CATACTATGATAG
* ** *** *
63030230 CTAGTGTAAGACATGTCTGGGACATGCATCAACACGCGCATATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-CATAC-TATGATAG
*
63030278 CCAATGTAAGACCATGTCTGGGACATGGCATCGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
63030312 TAATATATCC
Statistics
Matches: 240, Mismatches: 51, Indels: 44
0.72 0.15 0.13
Matches are distributed among these distances:
44 28 0.12
45 3 0.01
46 42 0.17
47 91 0.38
48 54 0.22
49 17 0.07
50 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATAG
Found at i:63030118 original size:94 final size:93
Alignment explanation
Indices: 63029953--63030311 Score: 354
Period size: 94 Copynumber: 3.8 Consensus size: 93
63029943 TTTGTGCTCC
* * * * *
63029953 AGTGTAAGACGTGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCACGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
63030018 GGCATGGCATCGGCATCTAGGCGAGGGCT
66 GACATGGCATCGGCATCAAGG-GAGTGCT
* * *
63030047 AGTTTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
63030112 GACATGGCACCGACA-CAAAGATGAGTGCC
66 GACATGGCATCGGCATC-AAG-GGAGTGCT
* * **
63030141 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAC-A-GAGATAGCCAGTGTAAGA-TGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ACTATGAG--AGCCAGTGTAAGACCATGTC
* **
63030203 TGGGACA-CGCATCGGC-T-AAGAGTTGTGCT
63 TGGGACATGGCATCGGCATCAAG-GGAGTGCT
* * * *
63030232 AGTGTAAGACATGTCTGGGACATGCATCAACACGCGCATATGAGAGCCAATGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CACAC-TATGAGAGCCAGTGTAAGACCATGTCT
63030297 GGGACATGGCATCGG
64 GGGACATGGCATCGG
63030312 TAATATATCC
Statistics
Matches: 216, Mismatches: 37, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
91 38 0.18
92 14 0.06
93 21 0.10
94 128 0.59
95 15 0.07
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGGGAGTGCT
Found at i:63037149 original size:39 final size:39
Alignment explanation
Indices: 63037072--63037176 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 39
63037062 TAGCTCCTCG
* * *
63037072 TTCAAGTGCCTTCGGGACATAGCCCGGTTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGTTATATAAACTCA
* *
63037112 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGG-TTATATAAACTCA
**
63037151 CACGAATGCCTTCGGGACTTAACCCG
1 TTC-AATGCCTTCGGGACTTAACCCG
63037177 AAATTAGTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.45
40 31 0.55
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (39 bp):
TTCAATGCCTTCGGGACTTAACCCGGTTATATAAACTCA
Found at i:63037258 original size:40 final size:40
Alignment explanation
Indices: 63037115--63037298 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
63037105 TAACTCATTC
* *
63037115 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * *
63037155 AATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
63037195 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
63037235 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
63037276 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63037299 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 8 0.07
40 101 0.84
41 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:63037282 original size:80 final size:80
Alignment explanation
Indices: 63037118--63037298 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
63037108 CTCATTCAAT
* * *
63037118 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGAAATTA
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGAAATTA
*
63037183 GTATCTCGCACAAAG
66 GTATCTAGCACAAAG
** *
63037198 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCG-GAT
1 GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGAAAT
63037260 ATAGTCA-CTTAGCACAAA-
64 -TAGT-ATC-TAGCACAAAG
*
63037278 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
63037299 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 9 0.10
80 70 0.80
81 9 0.10
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGAAATTA
GTATCTAGCACAAAG
Found at i:63043995 original size:39 final size:40
Alignment explanation
Indices: 63043918--63044064 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
63043908 TAGCTCCTCG
* * *
63043918 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
63043958 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
63043997 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
63044037 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
63044065 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:63044075 original size:80 final size:80
Alignment explanation
Indices: 63043964--63044144 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
63043954 CTCATTCAAT
* * *
63043964 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
63044027 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
63044043 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
63044107 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
63044124 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
63044145 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:63044104 original size:40 final size:40
Alignment explanation
Indices: 63043961--63044144 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
63043951 TAACTCATTC
* *
63043961 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
63044001 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
63044041 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
63044081 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
63044122 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63044145 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:63051489 original size:24 final size:24
Alignment explanation
Indices: 63051407--63051492 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
63051397 AAGAAATTTC
* **
63051407 AGCACTATGTGTGCGAGGTTATGC
1 AGCACTATGTGTGCGAGATTATAT
* * * * * *
63051431 GGTACTATGTGTGCAAAAACTACAT
1 AGCACTATGTGTGC-GAGATTATAT
*
63051456 GGCACTATGTGTGCGAGATTATAT
1 AGCACTATGTGTGCGAGATTATAT
63051480 AGCACTATGTGTG
1 AGCACTATGTGTG
63051493 TGAGGAAACA
Statistics
Matches: 46, Mismatches: 15, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
24 30 0.65
25 16 0.35
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGATTATAT
Found at i:63051508 original size:24 final size:24
Alignment explanation
Indices: 63051452--63051519 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
63051442 TGCAAAAACT
* *
63051452 ACATGGCACTATGTGTGCGAGATT
1 ACATGGCACTATGTGTGTGAGATA
* *
63051476 ATATAGCACTATGTGTGTGAGGA-A
1 ACATGGCACTATGTGTGTGA-GATA
63051500 ACATGGCACTATGTGTGTGA
1 ACATGGCACTATGTGTGTGA
63051520 ATGAGTAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.29
Consensus pattern (24 bp):
ACATGGCACTATGTGTGTGAGATA
Found at i:63063273 original size:24 final size:24
Alignment explanation
Indices: 63063210--63063323 Score: 112
Period size: 23 Copynumber: 4.8 Consensus size: 24
63063200 GGACTCACCA
* *
63063210 CAGCTCATATGAGCTTATTGATATAT
1 CAGCTCATATGAGCTTACT-AT-TTT
* *
63063236 CAGCTCGTAAGAGCTTACTATTTT
1 CAGCTCATATGAGCTTACTATTTT
*
63063260 TAGCTCAT-TGGAGCTTACTA-TTT
1 CAGCTCATAT-GAGCTTACTATTTT
63063283 CAGCTCATATGAGCTTACTA--TT
1 CAGCTCATATGAGCTTACTATTTT
63063305 CAGCTCA-ATAGAGCTTACT
1 CAGCTCATAT-GAGCTTACT
63063324 GTTTAGCTCG
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
21 2 0.03
22 18 0.23
23 20 0.26
24 19 0.25
25 2 0.03
26 16 0.21
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (24 bp):
CAGCTCATATGAGCTTACTATTTT
Found at i:63063296 original size:23 final size:23
Alignment explanation
Indices: 63063210--63063342 Score: 123
Period size: 22 Copynumber: 5.7 Consensus size: 23
63063200 GGACTCACCA
*
63063210 CAGCTCATATGAGCTTATTGATATAT
1 CAGCTCATATGAGCTTACT-AT-T-T
* *
63063236 CAGCTCGTAAGAGCTTACTATTTT
1 CAGCTCATATGAGCTTACTA-TTT
*
63063260 TAGCTCAT-TGGAGCTTACTATTT
1 CAGCTCATAT-GAGCTTACTATTT
63063283 CAGCTCATATGAGCTTACTA-TT
1 CAGCTCATATGAGCTTACTATTT
*
63063305 CAGCTCA-ATAGAGCTTACTGTTT
1 CAGCTCATAT-GAGCTTACTATTT
63063328 -AGCTCGATA-GAGCTT
1 CAGCTC-ATATGAGCTT
63063343 GCCGTTTGAG
Statistics
Matches: 92, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
21 2 0.02
22 29 0.32
23 23 0.25
24 19 0.21
25 2 0.02
26 17 0.18
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (23 bp):
CAGCTCATATGAGCTTACTATTT
Found at i:63063349 original size:22 final size:23
Alignment explanation
Indices: 63063306--63063367 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
63063296 CTTACTATTC
*
63063306 AGCTCAATAGAGCTTACTGTTT-
1 AGCTCAATAGAGCTTACCGTTTG
* *
63063328 AGCTCGATAGAGCTTGCCGTTTG
1 AGCTCAATAGAGCTTACCGTTTG
* *
63063351 AGCTTATTAGAGCTTAC
1 AGCTCAATAGAGCTTAC
63063368 TATTCATCAG
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 19 0.59
23 13 0.41
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (23 bp):
AGCTCAATAGAGCTTACCGTTTG
Found at i:63065023 original size:92 final size:93
Alignment explanation
Indices: 63064923--63065168 Score: 363
Period size: 92 Copynumber: 2.7 Consensus size: 93
63064913 ATCAAATAGT
*
63064923 GGTACGTAGCGTAGCTAACATACATGCGGTATAGTGCAATGCAGTAATCTGCTATACCA-ATACG
1 GGTACGTAGCGTAGCTAACGTACATGCGGTATAGTGCAATGCAGTAATCTGCTATACCAGATACG
63064987 TTGCAGTAAAACTACCAATTCAGTCAAA
66 TTGCAGTAAAACTACCAATTCAGTCAAA
* * *
63065015 GGTACGTAGTGTTGCTAACGTACATGCGGTATAGTGCAATGCAGTAATCTGCTATA-CAGATAGG
1 GGTACGTAGCGTAGCTAACGTACATGCGGTATAGTGCAATGCAGTAATCTGCTATACCAGATACG
* * *
63065079 TTGCAGTAAAACTGCCAGTTTAGTCAAA
66 TTGCAGTAAAACTACCAATTCAGTCAAA
* * ** *
63065107 GGTACGTAGCGTAGCTAACGTACATGCAGTACAGTGCAATGTGGTAATCCGCTATACC-GATA
1 GGTACGTAGCGTAGCTAACGTACATGCGGTATAGTGCAATGCAGTAATCTGCTATACCAGATA
63065169 TCGGTAAAGT
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
91 2 0.01
92 135 0.98
93 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (93 bp):
GGTACGTAGCGTAGCTAACGTACATGCGGTATAGTGCAATGCAGTAATCTGCTATACCAGATACG
TTGCAGTAAAACTACCAATTCAGTCAAA
Found at i:63066528 original size:22 final size:22
Alignment explanation
Indices: 63066500--63066546 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
63066490 AAACACACAG
63066500 TAAGTACAAAATTCTACATTTC
1 TAAGTACAAAATTCTACATTTC
63066522 TAAGTACAAAATTCTACATTTC
1 TAAGTACAAAATTCTACATTTC
63066544 TAA
1 TAA
63066547 CATTACAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.36
Consensus pattern (22 bp):
TAAGTACAAAATTCTACATTTC
Found at i:63069791 original size:41 final size:43
Alignment explanation
Indices: 63069720--63069815 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 43
63069710 ACACATATCG
* *
63069720 TACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCT
1 TACATGTAATCAAATATCGATGCCACTGTCCCAAACAGGGTCT
* *
63069763 TACATG-AATCAAATA-CGATGTCGA-TGTCCCAAACATGGTCT
1 TACATGTAATCAAATATCGATG-CCACTGTCCCAAACAGGGTCT
*
63069804 TACACGTAATCA
1 TACATGTAATCA
63069816 CATGTTAATG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 25 0.54
42 15 0.33
43 6 0.13
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
TACATGTAATCAAATATCGATGCCACTGTCCCAAACAGGGTCT
Found at i:63071282 original size:92 final size:92
Alignment explanation
Indices: 63071101--63071275 Score: 287
Period size: 92 Copynumber: 1.9 Consensus size: 92
63071091 CAGCTATACC
* * * *
63071101 GATAGGTTGCAGTAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAGCTAACGTACATGCGATA
1 GATAGGTTGCAGTAAAACTACCAATTCAATCAAAGATACATAGCGTAGCTAACGTACATGCGATA
*
63071166 CAGTGCAATGTGGTAATCCACTATAGT
66 CAGTGCAATGCGGTAATCCACTATAGT
* *
63071193 GATAGGTTGCAGTAAAACTACCAATTCAATCAAAGATACATAGCGTAGCTAACGTACATGTGGTA
1 GATAGGTTGCAGTAAAACTACCAATTCAATCAAAGATACATAGCGTAGCTAACGTACATGCGATA
63071258 CAGTGCAATGCGGTAATC
66 CAGTGCAATGCGGTAATC
63071276 TGCTATACCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (92 bp):
GATAGGTTGCAGTAAAACTACCAATTCAATCAAAGATACATAGCGTAGCTAACGTACATGCGATA
CAGTGCAATGCGGTAATCCACTATAGT
Found at i:63071809 original size:21 final size:21
Alignment explanation
Indices: 63071764--63071809 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
63071754 GAAGGGTAGT
* *
63071764 ACACGGCCGTGTGACAGAGGC
1 ACACGCCCGTGTGAAAGAGGC
* *
63071785 ACACGCCCGTGTGAAATAGGG
1 ACACGCCCGTGTGAAAGAGGC
63071806 ACAC
1 ACAC
63071810 AGTCGTGTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.11
Consensus pattern (21 bp):
ACACGCCCGTGTGAAAGAGGC
Found at i:63080941 original size:47 final size:47
Alignment explanation
Indices: 63080866--63081128 Score: 191
Period size: 46 Copynumber: 5.6 Consensus size: 47
63080856 GTAAGGTGCT
* * *
63080866 GATGCCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTC-AAGTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAAGCC
* * *
63080913 GATGCTATGTCCCAGACATGGTCGTACACTGACTATCATCTCGTAGCC
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAAGCC
* * *
63080961 GATGCATGTCCCAAACAT-GTCTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTAT-CATCTCGAAGCC
* * * ** * * **
63081007 AATGCATGCCCCAGACAT-GTCTTACACTAGCCCTCGTCT-TAATGTT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA-GCC
* * * **
63081053 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCAT-CTCGAAGCC
*
63081101 GATGCAAGTCCCAGACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
63081129 AGCTCACACA
Statistics
Matches: 172, Mismatches: 35, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
45 2 0.01
46 70 0.41
47 70 0.41
48 29 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAAGCC
Found at i:63081115 original size:94 final size:92
Alignment explanation
Indices: 63080961--63081131 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
63080951 TCTCGTAGCC
* * *
63080961 GATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGCCAATGCATGCCCCAGACATG
1 GATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAGGCCAATGCAAGCCCCAGACATG
63081026 TCTTACACTAGCCCTCGTCTTAATGTT
66 TCTTACACTAGCCCTCGTCTTAATGTT
* * *
63081053 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCAAGTCCCAGA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCAAGCCCCAGA
63081116 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
63081132 TCACACACGA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 49 0.71
95 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAGGCCAATGCAAGCCCCAGACATG
TCTTACACTAGCCCTCGTCTTAATGTT
Found at i:63088536 original size:47 final size:48
Alignment explanation
Indices: 63088463--63088634 Score: 144
Period size: 46 Copynumber: 3.7 Consensus size: 48
63088453 AGGGTAAGGT
* *
63088463 GCCGATGCCATG-TCCTAGACACGGTCTTACACTGGCTCA-TATCTC-AA
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCT-ATTATCTCGAA
* * * *
63088510 GTCGATGCCATGTTCCATACATGGTCTTACACTGACTATTATCTCGTA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTATTATCTCGAA
* * *
63088558 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTAT-TATCTCGAA
* ** *
63088604 GCTGATG-CATGCCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACT
63088635 AGCCCTCGTC
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 48 0.45
47 47 0.44
48 10 0.09
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTATTATCTCGAA
Found at i:63088600 original size:46 final size:46
Alignment explanation
Indices: 63088463--63088728 Score: 159
Period size: 47 Copynumber: 5.7 Consensus size: 46
63088453 AGGGTAAGGT
* * * * *
63088463 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTC-AA
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCGTA
* * * * *
63088510 GTCGATGCCATGTTCCATACATGGTCTTACACTGAC-TATTATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGTA
*
63088558 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTA
* * * * * *
63088603 GGCTGATGCATGCCCCAGACATGTCTTACACTAGCCCT-CGTCTCAATA
1 -GCCGATGCATGTCCCAGACATGTCTTACACT-GGCTTACATCTC-GTA
** * * * *
63088651 -CCGACACCATATCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGTA
*
63088698 GCCGATGCACGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
63088729 AGCTGACACA
Statistics
Matches: 169, Mismatches: 37, Indels: 27
0.73 0.16 0.12
Matches are distributed among these distances:
45 1 0.01
46 65 0.38
47 77 0.46
48 25 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTA
Found at i:63088625 original size:93 final size:94
Alignment explanation
Indices: 63088463--63088634 Score: 215
Period size: 93 Copynumber: 1.8 Consensus size: 94
63088453 AGGGTAAGGT
* * * * ** *
63088463 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTTCCAT
1 GCCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCACATCTCAAGGCGATGCCATGCCCCAG
63088528 ACATGGTCTTACACTGACTATTATCTCGTA
66 ACAT-GTCTTACACTGACTATTATCTCGTA
* * *
63088558 GCCGATG-CATGTCCCAAACA-TGTCTTACACTGGCTTACATCTCGAGGCTGATG-CATGCCCCA
1 GCCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCACATCTCAAGGC-GATGCCATGCCCCA
63088620 GACATGTCTTACACT
65 GACATGTCTTACACT
63088635 AGCCCTCGTC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
92 10 0.15
93 34 0.52
94 15 0.23
95 7 0.11
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCACATCTCAAGGCGATGCCATGCCCCAG
ACATGTCTTACACTGACTATTATCTCGTA
Found at i:63099882 original size:46 final size:46
Alignment explanation
Indices: 63099760--63099884 Score: 214
Period size: 46 Copynumber: 2.7 Consensus size: 46
63099750 GGTTGAGCAT
* * *
63099760 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
63099806 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
63099852 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63099885 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:63100926 original size:162 final size:162
Alignment explanation
Indices: 63100650--63100976 Score: 582
Period size: 162 Copynumber: 2.0 Consensus size: 162
63100640 TGAGTCTATT
* *
63100650 TTCATTTGGATTGAACAAAATAGGCATAAAAATTATATTTTATGAGATATTTAAACTTTTGTGAA
1 TTCATGTGCATTGAACAAAATAGGCATAAAAATTATATTTTATGAGATATTTAAACTTTTGTGAA
* *
63100715 ATAGGGCCAGAGTGATTTCTGGATCCCCTGTTCTGACTTCAAAAATTCATAATAAATTTTAAAAA
66 ACAGGGCCAGAGTGATTTCTGGATCCCCTATTCTGACTTCAAAAATTCATAATAAATTTTAAAAA
*
63100780 AATAATTATAAGTTTTTATTTATATGTGAAGA
131 AATAATTAGAAGTTTTTATTTATATGTGAAGA
* *
63100812 TTCATGTGCATTGAACAAAATAGGTATATAAATTATATTTTATGAGATATTTAAACTTTTGTGAA
1 TTCATGTGCATTGAACAAAATAGGCATAAAAATTATATTTTATGAGATATTTAAACTTTTGTGAA
*
63100877 ACAGGGCCAGAGTGATTTCTGGATCCCCTATTCTGACTTTAAAAATTCATAATAAATTTTAAAAA
66 ACAGGGCCAGAGTGATTTCTGGATCCCCTATTCTGACTTCAAAAATTCATAATAAATTTTAAAAA
63100942 AATAATTAGAAGTTTTTATTTATATGTGAAGA
131 AATAATTAGAAGTTTTTATTTATATGTGAAGA
63100974 TTC
1 TTC
63100977 CTTATTGAGT
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
162 157 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (162 bp):
TTCATGTGCATTGAACAAAATAGGCATAAAAATTATATTTTATGAGATATTTAAACTTTTGTGAA
ACAGGGCCAGAGTGATTTCTGGATCCCCTATTCTGACTTCAAAAATTCATAATAAATTTTAAAAA
AATAATTAGAAGTTTTTATTTATATGTGAAGA
Found at i:63103298 original size:27 final size:27
Alignment explanation
Indices: 63103267--63103444 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63103257 TAAATTGTAC
*
63103267 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
63103294 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
63103320 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
63103348 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
63103375 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
63103403 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
63103430 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63103445 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:63103328 original size:54 final size:55
Alignment explanation
Indices: 63103267--63103444 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
63103257 TAAATTGTAC
* **
63103267 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
63103322 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
63103375 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
63103430 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63103445 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:63111046 original size:27 final size:27
Alignment explanation
Indices: 63111016--63111191 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
63111006 AAATTGTACA
*
63111016 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
63111043 GCACTAAGTGTGGCGAAATGAATATGAT
1 GCACTAAGTGT-GCGAATTGACTATGTT
* **
63111071 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
63111098 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
** * *
63111125 GCACTAAGTGTGCGGTTTGATTATGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
63111152 GCACTAAGTGTGCGAGTTGATTAT-AT
1 GCACTAAGTGTGCGAATTGACTATGTT
*
63111178 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
63111192 GACTTAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 13 0.10
27 91 0.72
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:63111156 original size:54 final size:54
Alignment explanation
Indices: 63111015--63111191 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
63111005 TAAATTGTAC
* **
63111015 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT-GCGAGTTGAATATGT
* * ** *
63111069 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
* * * *
63111124 AGCACTAAGTGTGCGGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
*
63111178 -GCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63111192 GACTTAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 13 0.12
54 57 0.54
55 35 0.33
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:63118348 original size:45 final size:48
Alignment explanation
Indices: 63118297--63118421 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 48
63118287 ATGGTTGAGC
63118297 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGAGATG-GAACTAG
* *
63118343 -TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGAGATGGAACTA-G
63118388 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
63118422 TAGGGCGGGT
Statistics
Matches: 68, Mismatches: 2, Indels: 14
0.81 0.02 0.17
Matches are distributed among these distances:
42 4 0.06
43 6 0.09
45 29 0.43
47 28 0.41
49 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGAGATGGAACTAG
Found at i:63120360 original size:14 final size:13
Alignment explanation
Indices: 63120333--63120357 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63120323 TTTTTAATTT
63120333 AAAATGTTTTTTA
1 AAAATGTTTTTTA
63120346 AAAATGTTTTTT
1 AAAATGTTTTTT
63120358 TAAGCGAGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
AAAATGTTTTTTA
Found at i:63123366 original size:20 final size:19
Alignment explanation
Indices: 63123306--63123378 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
63123296 TACATAATAA
*
63123306 ATAATTAATAATAAAATGAT
1 ATAA-TAATAATAAAAAGAT
* *
63123326 ATAGTAA-AATAAAAATAAT
1 ATAATAATAATAAAAA-GAT
63123345 ATAATGAATAATAAAAAGAT
1 ATAAT-AATAATAAAAAGAT
63123365 ATAATATATAATAA
1 ATAATA-ATAATAA
63123379 TTTTTACATA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 7 0.16
19 10 0.23
20 19 0.43
21 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAATAATAATAAAAAGAT
Found at i:63123442 original size:23 final size:26
Alignment explanation
Indices: 63123412--63123484 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 26
63123402 GATAGTAAAG
* *
63123412 ATAAATAATATATAAAGTATTTAATAA
1 ATAAATTATATA-AAAATATTTAATAA
63123439 ATAAATTATATAAAAATATTTAA-AA
1 ATAAATTATATAAAAATATTTAATAA
*
63123464 GGACTAAATTAAATAAAAATA
1 --A-TAAATTATATAAAAATA
63123485 AAGCTCTAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
25 2 0.05
26 10 0.25
27 12 0.30
28 16 0.40
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (26 bp):
ATAAATTATATAAAAATATTTAATAA
Found at i:63125170 original size:230 final size:233
Alignment explanation
Indices: 63124745--63125448 Score: 618
Period size: 230 Copynumber: 3.0 Consensus size: 233
63124735 TAACACGTAA
* *
63124745 TATATTAATCATTATCATATATTATCGTTTATTATTCTAGTTGAAATATGCTCTGAGTCCTTATA
1 TATATTAATCATTATCATATATTATCGTTTATTATACTAGTTGAAATATGCTCTAAGTCCTTATA
* *
63124810 CTTTTCCTACATGTGAAAGTTAACCCTCCTACTATAATATATAACATTATATCATATCATATAGT
66 ATTTTCCTACATGTGAAAGTTAACCCTCCTACTATAATATAT-A-ATTAGATCATATCATATAGT
* * * * *
63124875 GTATAATATATTAATATTTATATGTATGCATCAATGATTAATCATTATAATATCATATAATACTA
129 ATATAATATATTAATACTTATATATATGCATCAATGATCAAACATTATAATATCATATAATACTA
*
63124940 TATCTTTTATTATATTCTATAATATAATAGTACTGCATTG
194 TATCTTTTATTATAGTCTATAATATAATAGTACTGCATTG
* *
63124980 TATATTAATTATTATCATATA-TATTGTTTATGATTATACTAGTTGAAATATGCTCTAAGTCCTT
1 TATATTAATCATTATCATATATTATCG-TT-T-ATTATACTAGTTGAAATATGCTCTAAGTCCTT
* * * * * * *
63125044 ATAATTTTCGTACATTTGAAAGTTAGCCTTCGT-CT-T-ATA-AT-GTTAGATCATATCAT-TAT
63 ATAATTTTCCTACATGTGAAAGTTAACCCTCCTACTATAATATATAATTAGATCATATCATATAG
* *
63125103 TATATAATATATTAATAGCTTATATATATGCATCAATGATCAAACATTATAATATTATCTAATAC
128 TATATAATATATTAATA-CTTATATATATGCATCAATGATCAAACATTATAATATCATATAATAC
* * * **
63125168 TATATCTTTTATTCTAGTCTATAATATAATAATAGTTATATATAG
192 TATATCTTTTATTATAGTCTATAATATAATAGTA-CTGCAT-T-G
* * * *
63125213 TAGGAGTATAGTATAT-ATTATTTACTATATAATGTTGTTTATTATTATTCTAGTTGAAATATGT
1 T---A-TAT--TA-ATCATTA--T-C-ATATATTATCGTTTATTA-TA--CTAGTTGAAATATGC
* * * ** * * * * * * *
63125277 TTTAAGT-TTCTATACTTTTTATACATTTTAAAGTTAATCCTCTTCCTATATTATATAATGCTAT
52 TCTAAGTCCT-TATAATTTTCCTACATGTGAAAGTTAACCCTCCTACTATAATATATAAT--TAG
* * * * * * *
63125341 ATCATATCATTTAATATGTAATATATTAATAGTT-TATATTTGCATCAATAATTAAACATTATAA
114 ATCATATCATATAGTATATAATATATTAATACTTATATATATGCATCAATGATCAAACATTATAA
* * * * *
63125405 TACCATGTAATATTATATATTTTATTATAATCTATAATATAATA
179 TATCATATAATACTATATCTTTTATTATAGTCTATAATATAATA
63125449 TAGTTATATA
Statistics
Matches: 384, Mismatches: 54, Indels: 47
0.79 0.11 0.10
Matches are distributed among these distances:
229 18 0.05
230 85 0.22
231 3 0.01
232 1 0.00
233 4 0.01
234 7 0.02
235 23 0.06
236 4 0.01
237 60 0.16
239 6 0.02
240 2 0.01
241 5 0.01
242 4 0.01
243 8 0.02
244 50 0.13
245 2 0.01
246 1 0.00
247 2 0.01
248 2 0.01
249 1 0.00
250 64 0.17
251 14 0.04
252 18 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.46
Consensus pattern (233 bp):
TATATTAATCATTATCATATATTATCGTTTATTATACTAGTTGAAATATGCTCTAAGTCCTTATA
ATTTTCCTACATGTGAAAGTTAACCCTCCTACTATAATATATAATTAGATCATATCATATAGTAT
ATAATATATTAATACTTATATATATGCATCAATGATCAAACATTATAATATCATATAATACTATA
TCTTTTATTATAGTCTATAATATAATAGTACTGCATTG
Found at i:63126855 original size:40 final size:40
Alignment explanation
Indices: 63126800--63126880 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
63126790 CTACTTGGGC
*
63126800 ATTATAACGTAATTAATTCAAAATATTTAATCATTTTAAA
1 ATTATAACGTAATTAATTCAAAATATTTAATCATTCTAAA
63126840 ATTATAACGTAATTAATTCAAAATATTTAATCATTCTAAA
1 ATTATAACGTAATTAATTCAAAATATTTAATCATTCTAAA
63126880 A
1 A
63126881 ATATTTTCAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (40 bp):
ATTATAACGTAATTAATTCAAAATATTTAATCATTCTAAA
Found at i:63134092 original size:49 final size:50
Alignment explanation
Indices: 63134020--63134264 Score: 320
Period size: 49 Copynumber: 4.9 Consensus size: 50
63134010 GCTATTGTGA
63134020 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAGATAATT
* * * *
63134069 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-TGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAGATAA--TT
* * **
63134120 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAGATAATT
63134169 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAA-ATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAGATAATT
* * * *
63134219 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-AGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAGATA
63134265 GCTCCGGCTA
Statistics
Matches: 170, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 83 0.49
50 44 0.26
51 42 0.25
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAGATAATT
Found at i:63134156 original size:28 final size:28
Alignment explanation
Indices: 63134124--63134207 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
63134114 AACTTTGATC
63134124 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
63134152 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
63134174 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
63134202 ACGTGT
1 ACGTGT
63134208 ACCAAATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:63134210 original size:101 final size:98
Alignment explanation
Indices: 63134022--63134251 Score: 327
Period size: 100 Copynumber: 2.3 Consensus size: 98
63134012 TATTGTGAGG
63134022 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATAATTGGTCACATGTGTAGTACT
* **
63134087 AAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
66 AAGTGCAGGCTACTACGCGTACCAAATAA--TTGA
** *
63134122 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAAGATAATT-GGTCACATGTGTAGTA
* *
63134186 CTAAGTGCAGGCTACTACGTGTACCAAATAATTGG
64 CTAAGTGCAGGCTACTACGCGTACCAAATAATTGA
* *
63134221 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
63134252 TGCGTACCAG
Statistics
Matches: 118, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
99 32 0.27
100 43 0.36
101 43 0.36
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAAATAATTGA
Found at i:63135985 original size:49 final size:49
Alignment explanation
Indices: 63135913--63136106 Score: 298
Period size: 49 Copynumber: 3.9 Consensus size: 49
63135903 GCTATTGTGA
*
63135913 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* **
63135962 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
63136011 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
63136061 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
63136107 GCTTTGGCTA
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
49 86 0.67
50 43 0.33
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:63136083 original size:99 final size:99
Alignment explanation
Indices: 63135912--63136105 Score: 343
Period size: 99 Copynumber: 2.0 Consensus size: 99
63135902 AGCTATTGTG
63135912 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGT
*
63135977 ACTAAGTGCAGGCTACTACGCGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGCGTACCAGATGGTT
* * *
63136011 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGT
*
63136076 ACTAAGTGCAGGCTACTATGCGTACCAGAT
66 ACTAAGTGCAGGCTACTACGCGTACCAGAT
63136106 AGCTTTGGCT
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 90 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (99 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTACGCGTACCAGATGGTT
Found at i:63142655 original size:40 final size:40
Alignment explanation
Indices: 63142591--63142824 Score: 253
Period size: 40 Copynumber: 5.9 Consensus size: 40
63142581 TCTTCGGAAT
* * *
63142591 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * *
63142630 TTAGCCTGGAT-ATATCAACTCGCACAAATGCCTTC-GGTT
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
63142669 TTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
63142708 TTAACCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * * * *
63142748 CTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
63142788 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGG
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGG
63142825 ATAACATTCA
Statistics
Matches: 160, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
38 21 0.13
39 26 0.16
40 110 0.69
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63145981 original size:225 final size:227
Alignment explanation
Indices: 63145578--63146043 Score: 593
Period size: 225 Copynumber: 2.1 Consensus size: 227
63145568 ATATCATATC
* * * * * *
63145578 ATATATATAATATATTAATAGCTTATATTTATGCATTAATGATTAAACATTATAATATTATGTAA
1 ATATATATAATATATTAATAGCTTATATATATGCATAAATAATTAAAAATTATAATATCATATAA
* * * * *
63145643 TATTATATATTTTATTATAATTGATAATATAATAATAGTTATATATAATAGTAGTACATTATATA
66 TACTAAATATTTTATTACAATTGATAATACAATAATAATTATATATAATAGTAGTACATTATATA
* * *
63145708 TTACATATTATTATATATTATTGTTTATTATTATACTAGTTGAAATATGCTTTAAGTCCTTATAC
131 TTACATATTATTATATATTATTATTTATTATTATACTAGGTGAAATATGCTTGAAGTCCTTATAC
63145773 TTTTCGTACATTTGAAAATTAGCTCTTTTGCT
196 TTTTCGTACATTTGAAAATTAGCTCTTTTGCT
*
63145805 ATATCATATCATATATTAATAG-TT-TATATATGCATAAATAATTAAAAATTATAA-ATCATATA
1 ATAT-ATATAATATATTAATAGCTTATATATATGCATAAATAATTAAAAATTATAATATCATATA
* *
63145867 ATACTAAATCTTTTATTACAATCT-ATATTACAATAATAATTATATATAATAGTAGTACATTATA
65 ATACTAAATATTTTATTACAAT-TGATAATACAATAATAATTATATATAATAGTAGTACATTATA
* * * * *
63145931 TATTGCTTATTGTTATATATTATTATTTATTATTGTACTAGGTGAAATATGCTTGAAGT-CTCTG
129 TATTACATATTATTATATATTATTATTTATTATTATACTAGGTGAAATATGCTTGAAGTCCT-TA
* * * ** *
63145995 TAGTTTTCATACAGTT-AAAAGTTAGCTCTCCTACT
193 TACTTTTCGTACATTTGAAAA-TTAGCTCTTTTGCT
63146030 ATATTATATAATAT
1 ATA-TATATAATAT
63146044 TATTGTATTA
Statistics
Matches: 205, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
224 6 0.03
225 149 0.73
226 28 0.14
227 6 0.03
228 16 0.08
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.46
Consensus pattern (227 bp):
ATATATATAATATATTAATAGCTTATATATATGCATAAATAATTAAAAATTATAATATCATATAA
TACTAAATATTTTATTACAATTGATAATACAATAATAATTATATATAATAGTAGTACATTATATA
TTACATATTATTATATATTATTATTTATTATTATACTAGGTGAAATATGCTTGAAGTCCTTATAC
TTTTCGTACATTTGAAAATTAGCTCTTTTGCT
Found at i:63146192 original size:5 final size:5
Alignment explanation
Indices: 63146182--63146294 Score: 192
Period size: 5 Copynumber: 22.4 Consensus size: 5
63146172 TTAGTAATAG
63146182 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
*
63146232 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT- TAATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
63146281 GTATATA TTATA TT
1 -T-TATA TTATA TT
63146295 TTTATTTTAT
Statistics
Matches: 103, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
4 3 0.03
5 95 0.92
6 2 0.02
7 3 0.03
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:63146489 original size:16 final size:17
Alignment explanation
Indices: 63146468--63146500 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63146458 ATAATTATAG
63146468 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
63146484 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
63146501 TTAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:63149872 original size:27 final size:27
Alignment explanation
Indices: 63149842--63150044 Score: 216
Period size: 27 Copynumber: 7.6 Consensus size: 27
63149832 AATCGATAAT
*
63149842 ATGACTATTTTACCCTTATGGGGTAAA
1 ATGACTATTTTGCCCTTATGGGGTAAA
* *
63149869 ATGACTGTTTTGCCCTTATAGGGTAAA
1 ATGACTATTTTGCCCTTATGGGGTAAA
**
63149896 ATGACTATTTACCCCTTATGGGGT--A
1 ATGACTATTTTGCCCTTATGGGGTAAA
* * *
63149921 ATGATTGTTTTGCCCTTATAGGGTAAA
1 ATGACTATTTTGCCCTTATGGGGTAAA
* *
63149948 ATGACTGTTTTGCCCTTATGTGGTAAA
1 ATGACTATTTTGCCCTTATGGGGTAAA
* *
63149975 ATGACTATTTTG--CTTGATGTGGTAAG
1 ATGACTATTTTGCCCTT-ATGGGGTAAA
** *
63150001 ATGACTATTTTGCCCTTATATGGTAAG
1 ATGACTATTTTGCCCTTATGGGGTAAA
* *
63150028 ATGATTGTTTTGCCCTT
1 ATGACTATTTTGCCCTT
63150045 TTGTGATGTA
Statistics
Matches: 151, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 23 0.15
26 21 0.14
27 104 0.69
28 3 0.02
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (27 bp):
ATGACTATTTTGCCCTTATGGGGTAAA
Found at i:63149945 original size:79 final size:80
Alignment explanation
Indices: 63149842--63150049 Score: 262
Period size: 79 Copynumber: 2.6 Consensus size: 80
63149832 AATCGATAAT
* *
63149842 ATGACTATTTTACCCTTATGGGGTAAAATGACTGTTTTGCCCTTATAG-GGTAAAATGACTATTT
1 ATGACTATTTTGCCCTTATAGGGTAAAATGACTGTTTTGCCCTTAT-GTGGTAAAATGACTATTT
63149906 ACCCCTT-ATGGGGT-A-
65 --CCCTTGATGGGGTAAG
* * *
63149921 ATGATTGTTTTGCCCTTATAGGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTT
1 ATGACTATTTTGCCCTTATAGGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTC
* *
63149986 GCTTGATGTGGTAAG
66 CCTTGATGGGGTAAG
* * * *
63150001 ATGACTATTTTGCCCTTATATGGTAAGATGATTGTTTTGCCCTTTTGTG
1 ATGACTATTTTGCCCTTATAGGGTAAAATGACTGTTTTGCCCTTATGTG
63150050 ATGTATGTTT
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
77 3 0.03
78 7 0.06
79 59 0.53
80 43 0.38
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.41
Consensus pattern (80 bp):
ATGACTATTTTGCCCTTATAGGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTC
CCTTGATGGGGTAAG
Done.