Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 185 of 311
Found at i:63652602 original size:82 final size:84
Alignment explanation
Indices: 63652454--63652684 Score: 317
Period size: 84 Copynumber: 2.8 Consensus size: 84
63652444 TGTATCAGTG
63652454 AAATTCAGGCTTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCA
1 AAATT-AGGC-TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCA
* **
63652519 GGC-TT-TGTGCTGGTGTATT
64 GGCTTTATATGCCAGTGTATT
*
63652538 AAATTAGGCTTATTGCCTAGCAGGCTTTATACCGGTGTATTATATCAGGCTTATTGCCTAGCAGG
1 AAATTAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCAGG
63652603 CTTTATATGCCAGTGTATT
66 CTTTATATGCCAGTGTATT
* * * * *
63652622 ATATCAGGCTTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT-TATGCCTAGCA
1 AAATTAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATC-AGGCTTAT-TGCCTAGCA
63652685 AATTTTATGT
Statistics
Matches: 133, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
82 56 0.42
83 8 0.06
84 69 0.52
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (84 bp):
AAATTAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCAGG
CTTTATATGCCAGTGTATT
Found at i:63652628 original size:125 final size:124
Alignment explanation
Indices: 63652458--63652684 Score: 350
Period size: 125 Copynumber: 1.8 Consensus size: 124
63652448 TCAGTGAAAT
* *
63652458 TCAGGCTTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
1 TCAGGCTTTATTGCCTAGCAGGCTTTATACCAGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
* * *
63652523 TTGTGCTGGTGTATTAAATTAGGC-TTATTGCCTAGCAGGCTTTATACCGGTGTATTATA
66 CTGTGCCGGTGTATTAAACTAGGCTTTA-TGCCTAGCAGGCTTTATACCGGTGTATTATA
*
63652582 TCAGGC-TTATTGCCTAGCAGGCTTTATATGCCAGTGTATTATATCAGGCTTATTGCCTAGTAGG
1 TCAGGCTTTATTGCCTAGCAGGCTTTATA--CCAGTGTATTATATCAGGCTTATTGCCTAGCAGG
*
63652646 CTCTGTGCCGGTGTATTATACTAGGCTTTATGCCTAGCA
64 CTCTGTGCCGGTGTATTAAACTAGGCTTTATGCCTAGCA
63652685 AATTTTATGT
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
123 21 0.23
124 6 0.06
125 63 0.68
126 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (124 bp):
TCAGGCTTTATTGCCTAGCAGGCTTTATACCAGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
CTGTGCCGGTGTATTAAACTAGGCTTTATGCCTAGCAGGCTTTATACCGGTGTATTATA
Found at i:63653868 original size:6 final size:6
Alignment explanation
Indices: 63653838--63653943 Score: 92
Period size: 6 Copynumber: 17.3 Consensus size: 6
63653828 AAGAAACATT
* *
63653838 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
63653885 GTGACAAA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
63653936 ATTAGA AT
1 ATCAGA AT
63653944 ATGAATGCAA
Statistics
Matches: 81, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.05
6 69 0.85
7 6 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:63653900 original size:37 final size:37
Alignment explanation
Indices: 63653852--63653943 Score: 139
Period size: 37 Copynumber: 2.5 Consensus size: 37
63653842 GAACTAGAAT
* *
63653852 CAAAATGAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
63653889 CAAAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
63653926 CAGAATCAGAATTAGAAT
1 CAAAATCAGAATCAGAAT
63653944 ATGAATGCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (37 bp):
CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:63654970 original size:27 final size:27
Alignment explanation
Indices: 63654838--63654972 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
63654828 GGGGCAAAAT
* * *
63654838 AGTAATTTTACCCCAC-GAGGGTATCTC
1 AGTAATTCTACCCTACAG-GGGTATTTC
*
63654865 GGTAATTCTACCCTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
*
63654892 AGTAATTCTACCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
63654919 AATAATCCTACCCTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
63654946 AGTAATTCTATCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
63654973 GAAAATTTTA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 93 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
AGTAATTCTACCCTACAGGGGTATTTC
Found at i:63654970 original size:54 final size:54
Alignment explanation
Indices: 63654867--63654972 Score: 194
Period size: 54 Copynumber: 2.0 Consensus size: 54
63654857 GGTATCTCGG
*
63654867 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAA
1 TAATCCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAA
*
63654921 TAATCCTACCCTACAGGGGTATTTCAGTAATTCTATCTTACAGGGGTATTTC
1 TAATCCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTC
63654973 GAAAATTTTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (54 bp):
TAATCCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAA
Found at i:63655006 original size:54 final size:54
Alignment explanation
Indices: 63654878--63654998 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 54
63654868 AATTCTACCC
* **
63654878 TACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATCCTACCC
1 TACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATCCTACAA
* * **
63654932 TACAGGGGTATTTCAGTAATTCTATCTTACAGGGGTATTTCGAA-AATTTTACAA
1 TACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTC-AATAATCCTACAA
63654986 -ATCAAGGGTATTT
1 TA-CAAGGGTATTT
63654999 TGGTAATTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
53 1 0.02
54 56 0.95
55 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (54 bp):
TACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATCCTACAA
Found at i:63655023 original size:27 final size:27
Alignment explanation
Indices: 63654976--63655088 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
63654966 GTATTTCGAA
63654976 AATTTTACAAATCAAGGGTATTTTGGT
1 AATTTTACAAATCAAGGGTATTTTGGT
*
63655003 AATTTTACAAA-CCAGGAGTATTTTGGT
1 AATTTTACAAATCAAGG-GTATTTTGGT
* * *
63655030 AATTTTGCTAATTGAA-GGTATTTTGGT
1 AATTTTAC-AAATCAAGGGTATTTTGGT
* * *
63655057 AATTTTGCTAATCGAA-GGTATTTTGAT
1 AATTTTACAAATC-AAGGGTATTTTGGT
63655084 AATTT
1 AATTT
63655089 GGTAAACTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.08
27 63 0.86
28 3 0.04
29 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
AATTTTACAAATCAAGGGTATTTTGGT
Found at i:63661680 original size:41 final size:41
Alignment explanation
Indices: 63661635--63661935 Score: 439
Period size: 41 Copynumber: 7.3 Consensus size: 41
63661625 TATTCGGACT
*
63661635 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
63661676 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
63661717 TTATTGCCTAGTAGGGTTTGTGCCGGTG-ATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
63661757 TTATTGCCTAGCAAGCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
63661798 TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
63661839 TTAATT-CCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TT-ATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
63661882 TTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
63661923 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
63661936 AATTTTATGT
Statistics
Matches: 237, Mismatches: 16, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
40 38 0.16
41 158 0.67
42 9 0.04
43 32 0.14
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:63661775 original size:81 final size:82
Alignment explanation
Indices: 63661635--63661936 Score: 432
Period size: 81 Copynumber: 3.7 Consensus size: 82
63661625 TATTCGGACT
* *
63661635 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
63661700 GGTGTATTATATCAGGC
66 GGTGTATTATATCAGGC
* * *
63661717 TTATTGCCTAGTAGGGTTTGTGCCGGTG-ATTAAATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
*
63661781 GGTGTATTAAATCAGGC
66 GGTGTATTATATCAGGC
* * *
63661798 TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTAATT-CCTAGCAGGCTTTATAT
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTT-ATTGCCTAGCAAGC-TT-TGT
63661862 GCCGGTGTATTATATCAGGC
63 GCCGGTGTATTATATCAGGC
* *
63661882 TTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT-TATGCCTAGCAA
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCAA
63661937 ATTTTATGTG
Statistics
Matches: 196, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
81 75 0.38
82 48 0.24
83 7 0.04
84 66 0.34
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (82 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
GGTGTATTATATCAGGC
Found at i:63664043 original size:53 final size:54
Alignment explanation
Indices: 63663954--63664169 Score: 213
Period size: 55 Copynumber: 4.0 Consensus size: 54
63663944 TATGTGGCAT
* * * *
63663954 CCTTTTGAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
63664008 CCTTATG-AACTCACCAATGCCATGCCTTGTCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTG
* * * * * *
63664061 TCTTATAGAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCATTA
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * ** *
63664116 CCTT-TGAAATCTAACCAATTGTCAAACCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63664170 AAGCCTATTG
Statistics
Matches: 130, Mismatches: 26, Indels: 11
0.78 0.16 0.07
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 14 0.11
55 67 0.52
56 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:63664106 original size:108 final size:110
Alignment explanation
Indices: 63663960--63664162 Score: 277
Period size: 108 Copynumber: 1.9 Consensus size: 110
63663950 GCATCCTTTT
* * * * *
63663960 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTT-TGAAATCTAACC
** *
63664023 AA-TGCCATGCCTTGTCATGGTCTTACATGGGACCTTTGTCTTATA
65 AATTGCCAAACCTTGGCATGGTCTTACATGGGACCTTTGTCTTATA
* *
63664068 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCATTACCTTTGAAATCTAACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTTGAAATCTAACCA
*
63664133 ATTGTCAAACCTTGGCATGGTCTTACATGG
66 ATTGCCAAACCTTGGCATGGTCTTACATGG
63664163 TATCCTTAAG
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 2 0.02
108 48 0.59
109 7 0.09
110 24 0.30
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTTGAAATCTAACCA
ATTGCCAAACCTTGGCATGGTCTTACATGGGACCTTTGTCTTATA
Found at i:63666678 original size:37 final size:37
Alignment explanation
Indices: 63666628--63666701 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
63666618 AAATGAAAGG
63666628 TTTCGGAATAACCAAAACACAACATCGAAACGAATAC
1 TTTCGGAATAACCAAAACACAACATCGAAACGAATAC
*
63666665 TTTCGGAATAACCAAAACACAACATCGAAATGAATAC
1 TTTCGGAATAACCAAAACACAACATCGAAACGAATAC
63666702 CAGGTAAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.49, C:0.23, G:0.11, T:0.18
Consensus pattern (37 bp):
TTTCGGAATAACCAAAACACAACATCGAAACGAATAC
Found at i:63669787 original size:46 final size:46
Alignment explanation
Indices: 63669719--63669888 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
63669709 TGTAACCCGC
* *
63669719 CCATAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
63669765 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * * *
63669815 CTC-T---CGAACTCGGACTCAACTTAATGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
63669858 CCATAAGTGAACTCGTACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
63669889 TTTGGATGCC
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
46 55 0.56
47 25 0.25
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:63669835 original size:93 final size:93
Alignment explanation
Indices: 63669727--63669898 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
63669717 GCCCATAAGT
* * *
63669727 GAACTCGGAATCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63669792 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * * *
63669820 GAACTCGGACTCAACTTAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGTACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
63669885 CGAGTTTGGATGCC
66 CGAGCTCGGATGCC
63669899 CAAATATCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:63680562 original size:44 final size:44
Alignment explanation
Indices: 63680495--63680584 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
63680485 CCATTCAAGG
63680495 ACGCATCACTGTAAATCACAAACTCCTTACCTGGTTCTGGTTGT
1 ACGCATCACTGTAAATCACAAACTCCTTACCTGGTTCTGGTTGT
*
63680539 ACGCATCACTGTAAATCATAAACTCCTTACCTGGTTCTGGTTGT
1 ACGCATCACTGTAAATCACAAACTCCTTACCTGGTTCTGGTTGT
63680583 AC
1 AC
63680585 TAACACAGGA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32
Consensus pattern (44 bp):
ACGCATCACTGTAAATCACAAACTCCTTACCTGGTTCTGGTTGT
Found at i:63685798 original size:25 final size:25
Alignment explanation
Indices: 63685770--63685848 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
63685760 CGAATGGCCA
63685770 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
63685795 ATGTG-TTAAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
63685817 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
63685842 GTGTGAT
1 ATGTGAT
63685849 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 14
0.62 0.15 0.23
Matches are distributed among these distances:
22 6 0.16
23 10 0.26
24 10 0.26
25 12 0.32
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:63685813 original size:47 final size:47
Alignment explanation
Indices: 63685744--63685867 Score: 212
Period size: 47 Copynumber: 2.6 Consensus size: 47
63685734 TTTTATGTGT
*
63685744 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
63685791 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
63685838 ATATGTGTGATAAGGCCGAATGGCTAATGT
1 ATATATGTGATAAGGCCGAATGGCCAATGT
63685868 AAAACATGTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:63685908 original size:48 final size:48
Alignment explanation
Indices: 63685838--63685973 Score: 209
Period size: 48 Copynumber: 2.8 Consensus size: 48
63685828 GTGAACATGC
* * * *
63685838 ATATGTGTGATAAGGCCGAATGGCTAATGTAAAACATGTATGAGATATGT
1 ATATGTG-G-TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
*
63685888 ATATGTGGTAAAGCCGAATGGCTAGTGCGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
63685936 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
63685974 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 72 0.90
49 1 0.01
50 7 0.09
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
Found at i:63686265 original size:37 final size:37
Alignment explanation
Indices: 63686120--63686264 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
63686110 GGAAATATAT
63686120 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63686157 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63686194 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
63686231 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
63686265 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63687937 original size:40 final size:40
Alignment explanation
Indices: 63687534--63687925 Score: 595
Period size: 40 Copynumber: 9.8 Consensus size: 40
63687524 GAGAATTGAG
*
63687534 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687574 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687614 AGTGATATATCCGGCCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687654 AGTGATATATCCAGGCTAAGTCCCGAAGGGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687694 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687734 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687774 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63687814 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
63687854 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
63687894 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
63687926 ATCATGCTGG
Statistics
Matches: 326, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 326 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:63692207 original size:25 final size:25
Alignment explanation
Indices: 63692179--63692257 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
63692169 CGAATGGCCA
63692179 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
63692204 ATGTG-TTAAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
63692226 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
63692251 GTGTGAT
1 ATGTGAT
63692258 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 14
0.62 0.15 0.23
Matches are distributed among these distances:
22 6 0.16
23 10 0.26
24 10 0.26
25 12 0.32
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:63692222 original size:47 final size:47
Alignment explanation
Indices: 63692153--63692278 Score: 207
Period size: 47 Copynumber: 2.7 Consensus size: 47
63692143 TTTTATGTGT
* *
63692153 ATATATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
63692200 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
63692247 ATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
63692279 AACATGTATG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:63692319 original size:48 final size:48
Alignment explanation
Indices: 63692247--63692382 Score: 200
Period size: 48 Copynumber: 2.8 Consensus size: 48
63692237 GTGAACATGC
* * *
63692247 ATATGTGTGATAAGGCCGAATGGCTAATGTGAAACATGTATGAGATATGT
1 ATATGTG-G-TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
* *
63692297 ATATGTGGTAAAGCCAAATGGCTAGTGCGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
*
63692345 ATATGTGGTAAAGCCGAATGGCTAGTGTAAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
63692383 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 70 0.90
49 1 0.01
50 7 0.09
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
Found at i:63692674 original size:37 final size:37
Alignment explanation
Indices: 63692529--63692673 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
63692519 GGAAATATAT
*
63692529 TCCGGGTAAGACCCGATGACTACGAGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63692566 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
63692603 TCCCGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
63692640 TCCGGGTAAGACCCGATAACTTCGTGTAGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
63692674 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63695672 original size:55 final size:53
Alignment explanation
Indices: 63695534--63695743 Score: 176
Period size: 55 Copynumber: 3.9 Consensus size: 53
63695524 GTATCCTTTT
* * * * *
63695534 GAAACTTACCATTGCCATGTCTCGACATGGTCTAACATGGTATCCTTGCCTTAT
1 GAAACTTACCAATGCCATGT-TTGACATGGTCTTACATGGGATCCTTGCCTTAA
* *
63695588 G-AACTCACCAATGCCATGCCTTTG-CATGGTCTTATATGGGA-CCTTTGCCTTAAA
1 GAAACTTACCAATGCCATG--TTTGACATGGTCTTACATGGGATCC-TTGCCTT-AA
* **
63695642 GAAACTTATCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTT-A
1 GAAACTTACCAATGCCATGT-TTGACATGGTCTTACATGGGATCCTTGCCTTAA
* * * * *
63695695 GAAACCTAACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 GAAA-CTTACCAA-TGCCATG-TTTGACATGGTCTTACATGGGATCCTT
63695744 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 18, Indels: 21
0.77 0.11 0.13
Matches are distributed among these distances:
52 2 0.02
53 42 0.33
54 14 0.11
55 67 0.53
56 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (53 bp):
GAAACTTACCAATGCCATGTTTGACATGGTCTTACATGGGATCCTTGCCTTAA
Found at i:63695686 original size:108 final size:110
Alignment explanation
Indices: 63695534--63695736 Score: 286
Period size: 108 Copynumber: 1.9 Consensus size: 110
63695524 GTATCCTTTT
* * * *
63695534 GAAACTTACCATTGCCATGTCTCGACATGGTCTAACATGGTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTATCGACATGGTCTAACATGATATCCTTGCCTTA-GAAACCTAACC
* *
63695597 AA-TGCCATGCCTTTGCATGGTCTTATATGGGACCTTTGCCTTAAA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAAA
* * *
63695642 GAAACTTATCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTAACCA
1 GAAACTTACCAATGCCATGTATCGACATGGTCTAACATGATATCCTTGCCTTAGAAACCTAACCA
*
63695707 ATTGTCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
63695737 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 7 0.09
110 25 0.30
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTATCGACATGGTCTAACATGATATCCTTGCCTTAGAAACCTAACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAAA
Found at i:63709420 original size:30 final size:30
Alignment explanation
Indices: 63709384--63709440 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
63709374 CCGAGCCTAG
*
63709384 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATGCAAAAGTTTAA
* *
63709414 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
63709441 CATATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAA
Found at i:63711499 original size:43 final size:43
Alignment explanation
Indices: 63711404--63711510 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
63711394 CCAATATGAG
* * ** *
63711404 ATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGAG
1 ATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATAAAA
* *
63711447 ATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT-TAAACA
1 ATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATAAA-A
* *
63711490 ATTATGTGTAAGACCTTGTCT
1 ATTACGTGTAAGACCATGTCT
63711511 AGGACAGTGG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.04
43 51 0.96
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATAAAA
Found at i:63714613 original size:24 final size:24
Alignment explanation
Indices: 63714561--63714719 Score: 115
Period size: 24 Copynumber: 6.5 Consensus size: 24
63714551 AATGACATTG
* *
63714561 GCACTAAGTGTGCGGATTTTGAATG
1 GCACTATGTGTGCGGA-TTTGAATA
*
63714586 GCACTATGTGTGCGGAATTGAATA
1 GCACTATGTGTGCGGATTTGAATA
*
63714610 GCACTATGTGTGCTGATTTGAAT-
1 GCACTATGTGTGCGGATTTGAATA
* * * * *
63714633 GTCAATACGAGTGTGTGGATTTCTAA-G
1 G-CACTA--TGTGTGCGGATTT-GAATA
* ** * *
63714660 GCACTATGTGTGCGGGTGAGCATG
1 GCACTATGTGTGCGGATTTGAATA
*
63714684 GCACTAAGTGTGCGGATTTGAATA
1 GCACTATGTGTGCGGATTTGAATA
*
63714708 GCATTATGTGTG
1 GCACTATGTGTG
63714720 TGAAATCGAT
Statistics
Matches: 102, Mismatches: 26, Indels: 13
0.72 0.18 0.09
Matches are distributed among these distances:
23 2 0.02
24 68 0.67
25 15 0.15
26 14 0.14
27 3 0.03
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGGATTTGAATA
Found at i:63714721 original size:74 final size:74
Alignment explanation
Indices: 63714567--63714706 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 74
63714557 ATTGGCACTA
* * *
63714567 AGTGTGCGGATTTTGAATGGCACTATGTGTGCGGAATTGAATAGCACTATGTGTGCTGATTTGAA
1 AGTGTGCGGATTTTGAATGGCACTATGTGTGCGG-AGTGAATAGCACTAAGTGTGCGGATTTGAA
63714632 TGTCAATACG
65 TGTCAATACG
* *
63714642 AGTGTGTGGATTTCT-AA-GGCACTATGTGTGCGG-GTGAGCATGGCACTAAGTGTGCGGATTTG
1 AGTGTGCGGATTT-TGAATGGCACTATGTGTGCGGAGTGA--ATAGCACTAAGTGTGCGGATTTG
63714704 AAT
63 AAT
63714707 AGCATTATGT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
72 3 0.05
74 39 0.68
75 14 0.25
76 1 0.02
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (74 bp):
AGTGTGCGGATTTTGAATGGCACTATGTGTGCGGAGTGAATAGCACTAAGTGTGCGGATTTGAAT
GTCAATACG
Found at i:63726573 original size:93 final size:93
Alignment explanation
Indices: 63726460--63726631 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63726450 CGCCCATAAG
* *
63726460 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63726525 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
63726553 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63726618 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63726632 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:63726628 original size:46 final size:46
Alignment explanation
Indices: 63726453--63726628 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
63726443 TGTAACCCGC
* * *
63726453 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
63726499 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
63726549 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63726592 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
63726629 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63734059 original size:46 final size:46
Alignment explanation
Indices: 63733992--63734163 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
63733982 TGTAACCCGC
*
63733992 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
63734038 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
63734088 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
63734131 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
63734164 TGGATGCTCA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:63734158 original size:93 final size:93
Alignment explanation
Indices: 63733999--63734170 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63733989 CGCCCATAAG
* *
63733999 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63734064 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
63734092 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
63734157 ACGAGTTTGGATGC
66 ACGAGTTCGGATGC
63734171 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:63736811 original size:41 final size:41
Alignment explanation
Indices: 63736755--63736844 Score: 153
Period size: 41 Copynumber: 2.2 Consensus size: 41
63736745 CTCGTTTTTG
* *
63736755 AGCTATCAGTCAGGACGTAGCTATAGAGTGCTGCTCAAACA
1 AGCTGTCAGTCAGGACGTAGCTACAGAGTGCTGCTCAAACA
*
63736796 AGCTGTCAGTCAGGACGTAGCTACAGAGTGCTGCTCACACA
1 AGCTGTCAGTCAGGACGTAGCTACAGAGTGCTGCTCAAACA
63736837 AGCTGTCA
1 AGCTGTCA
63736845 CTCATAGGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (41 bp):
AGCTGTCAGTCAGGACGTAGCTACAGAGTGCTGCTCAAACA
Found at i:63750452 original size:16 final size:14
Alignment explanation
Indices: 63750414--63750445 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
63750404 TGAAATGTGT
*
63750414 AAGACCATGGTTGA
1 AAGACCATGATTGA
63750428 AAGACCATGATTGA
1 AAGACCATGATTGA
63750442 AAGA
1 AAGA
63750446 TACCATGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (14 bp):
AAGACCATGATTGA
Found at i:63750461 original size:60 final size:60
Alignment explanation
Indices: 63750368--63750491 Score: 223
Period size: 60 Copynumber: 2.1 Consensus size: 60
63750358 TGAAATGCGT
*
63750368 AAGACCATAGTTGAAAGATTCCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGA
1 AAGACCATAGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGA
63750428 AAGACCAT-GATTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGA
1 AAGACCATAG-TTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGA
63750488 AAGA
1 AAGA
63750492 TACCATGGCA
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
59 1 0.02
60 61 0.98
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (60 bp):
AAGACCATAGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGA
Found at i:63750481 original size:30 final size:30
Alignment explanation
Indices: 63750388--63750483 Score: 85
Period size: 30 Copynumber: 3.2 Consensus size: 30
63750378 TTGAAAGATT
63750388 CCATGGCAACATGATATGAAATGTGTAAGA
1 CCATGGCAACATGATATGAAATGTGTAAGA
* * *
63750418 CCATGGTTGAA-A-GACCATG--AT-TGAAAGATA
1 CCATGG--CAACATGA-TATGAAATGTGTAAG--A
63750448 CCATGGCAACATGATATGAAATGTGTAAGA
1 CCATGGCAACATGATATGAAATGTGTAAGA
63750478 CCATGG
1 CCATGG
63750484 TTGAAAGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 20
0.66 0.08 0.26
Matches are distributed among these distances:
28 7 0.14
29 6 0.12
30 24 0.48
31 6 0.12
32 7 0.14
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (30 bp):
CCATGGCAACATGATATGAAATGTGTAAGA
Found at i:63750495 original size:46 final size:46
Alignment explanation
Indices: 63750428--63750736 Score: 404
Period size: 46 Copynumber: 6.7 Consensus size: 46
63750418 CCATGGTTGA
* * **
63750428 AAGACCATGATTGAAAGATACCATGGCAACATGATATGAAATGTGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
* *
63750474 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
* ** *
63750520 AAGACCATGGTTGAAATATACCATGGCAACATGACGGGAAATGAAA
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
* * *
63750566 AAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAACGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
* * *
63750612 AAGACCATGGTTGAAAGATACCATGGCAACTTGACATGAAAAGGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
*
63750658 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAAT
** * * *
63750704 AAGACCATAATTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
63750737 TCAAAGATAA
Statistics
Matches: 230, Mismatches: 32, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 1 0.00
46 229 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
Found at i:63750679 original size:138 final size:138
Alignment explanation
Indices: 63750427--63750736 Score: 458
Period size: 138 Copynumber: 2.2 Consensus size: 138
63750417 ACCATGGTTG
* * **
63750427 AAAGACCATGATTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 AAAGACCATGATTGAAAGATACCATGGCAACATGACATGAAACGAATAAGACCATGGTTGAAAGA
* *
63750492 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAATATACCATGGCAACATGACGG
66 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
63750557 GAAATGAA
131 AAAATGAA
* * *
63750565 AAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAACGAATAAGACCATGGTTGAAAGA
1 AAAGACCATGATTGAAAGATACCATGGCAACATGACATGAAACGAATAAGACCATGGTTGAAAGA
* *
63750630 TACCATGGCAACTTGACATGAAAAGGATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
66 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
63750695 AAAATGAG
131 AAAATGAA
* * * * *
63750703 TAAGACCATAATTGAAAGACACTATGGCATCATG
1 AAAGACCATGATTGAAAGATACCATGGCAACATG
63750737 TCAAAGATAA
Statistics
Matches: 152, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 152 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.19
Consensus pattern (138 bp):
AAAGACCATGATTGAAAGATACCATGGCAACATGACATGAAACGAATAAGACCATGGTTGAAAGA
TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
AAAATGAA
Found at i:63753036 original size:27 final size:27
Alignment explanation
Indices: 63753020--63753284 Score: 320
Period size: 27 Copynumber: 9.8 Consensus size: 27
63753010 CGACTTGTAA
63753020 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
63753047 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
**
63753074 AATTACTATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
63753101 AATTACCGTTTTACCCTC-AGTTTATAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
**
63753128 AATTACTTTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* * ** *
63753155 AATTACCGTTTTACCATTGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
* *
63753182 AATTATCGTTTTACCCTTGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
63753209 AATTACTGGTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTACAG
* *
63753236 AATTATCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
63753263 AATTACCGTTTTACCCTTGATT
1 AATTACCGTTTTACCCTCGATT
63753285 GTGAAATTAC
Statistics
Matches: 200, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.01
27 194 0.97
28 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.42
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:63753078 original size:54 final size:54
Alignment explanation
Indices: 63753020--63753279 Score: 353
Period size: 54 Copynumber: 4.8 Consensus size: 54
63753010 CGACTTGTAA
63753020 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** *
63753074 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAG
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * * *
63753128 AATTACTTTTTTACCCTCGATTTACAGAATTACCGTTTTACCATTGATTTGTA-A-
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACC-CTCAGTT-TACAG
* * * * *
63753182 AATTATCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
63753236 AATTATCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
63753280 TGATTGTGAA
Statistics
Matches: 182, Mismatches: 20, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
52 2 0.01
53 5 0.03
54 168 0.92
55 5 0.03
56 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:63753319 original size:27 final size:27
Alignment explanation
Indices: 63753296--63753401 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
63753286 TGAAATTACT
* *
63753296 GAAATACCCCTATAGGATAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* *
63753323 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
63753350 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * *
63753377 GAGATACCCTTGTGGGGTAAAATTA
1 GAAATACCCCTGTAGGGTAGAATTA
63753402 CCATTTTGCC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTATC
Found at i:63753372 original size:54 final size:53
Alignment explanation
Indices: 63753296--63753399 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
63753286 TGAAATTACT
*
63753296 GAAATACCCCTATAGGATAGAATTATCGAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGGTA-AAATATC
* * * *
63753350 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAAT
1 GAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAAT
63753400 TACCATTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (53 bp):
GAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAATATC
Found at i:63753640 original size:27 final size:26
Alignment explanation
Indices: 63753602--63753684 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
63753592 CGGAGGAAGC
* *
63753602 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
63753629 GTTCTGGTGGCTCTGCCACAATATTT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
63753655 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
63753682 GTT
1 GTT
63753685 GACCGATCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:63753804 original size:22 final size:22
Alignment explanation
Indices: 63753779--63753830 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
63753769 TTAATGGATC
63753779 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
63753801 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
63753823 CGTGCCAA
1 TGTGCCAA
63753831 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:63754017 original size:27 final size:27
Alignment explanation
Indices: 63753995--63754068 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
63753985 TAGGTGGGTT
*
63753995 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
63754022 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
63754049 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
63754069 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:63754195 original size:6 final size:6
Alignment explanation
Indices: 63754186--63754317 Score: 112
Period size: 6 Copynumber: 21.8 Consensus size: 6
63754176 TTGCATTCAC
* * *
63754186 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTTTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
63754235 -TTACTA ATACTG ATTCTG ATTCTG GTTCTG -TTACTA ATAT-TG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
63754283 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
63754318 TATTTTGGTT
Statistics
Matches: 102, Mismatches: 13, Indels: 22
0.74 0.09 0.16
Matches are distributed among these distances:
5 8 0.08
6 86 0.84
7 6 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:63754338 original size:30 final size:30
Alignment explanation
Indices: 63754186--63754317 Score: 194
Period size: 30 Copynumber: 4.4 Consensus size: 30
63754176 TTGCATTCAC
*
63754186 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* *
63754217 ATTTTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
63754247 ATTCTGATTCTGGTTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
63754277 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
63754307 ATTCTGATTCT
1 ATTCTGATTCT
63754318 TATTTTGGTT
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
29 1 0.01
30 70 0.77
31 20 0.22
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:63757180 original size:93 final size:93
Alignment explanation
Indices: 63757067--63757238 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63757057 CGCCCATAAG
* *
63757067 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63757132 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
63757160 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63757225 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63757239 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:63757235 original size:46 final size:46
Alignment explanation
Indices: 63757060--63757235 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
63757050 TGTAACCCGC
* * *
63757060 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
63757106 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
63757156 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63757199 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
63757236 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63759967 original size:26 final size:26
Alignment explanation
Indices: 63759905--63759970 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
63759895 CAAAACACAC
*
63759905 AAAAATAAAAATTCAAAAACTATTAA
1 AAAAATAAAAATTCAAAAACAATTAA
* *
63759931 AAACATCAAAATTACAAAAA-AATTAA
1 AAAAATAAAAATT-CAAAAACAATTAA
63759957 AAAAATTAAAAATT
1 AAAAA-TAAAAATT
63759971 TTCCTATGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.23
Consensus pattern (26 bp):
AAAAATAAAAATTCAAAAACAATTAA
Found at i:63760575 original size:20 final size:20
Alignment explanation
Indices: 63760545--63760636 Score: 114
Period size: 20 Copynumber: 4.7 Consensus size: 20
63760535 ATACCCATGG
*
63760545 TTGTA-ACAAGCTGCCAGTA
1 TTGTAGACAAGCTACCAGTA
* *
63760564 TTGTGGACAAGCCACCAGTA
1 TTGTAGACAAGCTACCAGTA
* *
63760584 TTGCAAACAAGCTACCAGTA
1 TTGTAGACAAGCTACCAGTA
*
63760604 TTGTAGACAAGCCACCAGTA
1 TTGTAGACAAGCTACCAGTA
*
63760624 TTGTAGAAAAGCT
1 TTGTAGACAAGCT
63760637 GTCAGTATAA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
19 4 0.07
20 56 0.93
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.23
Consensus pattern (20 bp):
TTGTAGACAAGCTACCAGTA
Found at i:63760604 original size:40 final size:41
Alignment explanation
Indices: 63760549--63760719 Score: 188
Period size: 40 Copynumber: 4.2 Consensus size: 41
63760539 CCATGGTTGT
63760549 AACAAGCTGCCAGTAT-TGTGGACAAGCCACCAGTATTGCA
1 AACAAGCTGCCAGTATATGTGGACAAGCCACCAGTATTGCA
* * *
63760589 AACAAGCTACCAGTAT-TGTAGACAAGCCACCAGTATTGTA
1 AACAAGCTGCCAGTATATGTGGACAAGCCACCAGTATTGCA
* * * * *
63760629 GAA-AAGCTGTCAGTATAAGTGGACAAACCACTAGTGTTGCA
1 -AACAAGCTGCCAGTATATGTGGACAAGCCACCAGTATTGCA
* * * *
63760670 GACAAGCTGCCAGTATATGTGGAC-AGTCACCAATGTTGCA
1 AACAAGCTGCCAGTATATGTGGACAAGCCACCAGTATTGCA
*
63760710 AATAAGCTGC
1 AACAAGCTGC
63760720 TAATACTTCC
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
40 69 0.64
41 39 0.36
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (41 bp):
AACAAGCTGCCAGTATATGTGGACAAGCCACCAGTATTGCA
Found at i:63760717 original size:81 final size:80
Alignment explanation
Indices: 63760552--63760719 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 80
63760542 TGGTTGTAAC
* *
63760552 AAGCTGCCAGTATTGTGGACAAGCCACCAGTATTGCAAACAAGCTACCAGTATTGTAGACAAGCC
1 AAGCTGCCAGTATAGTGGACAAACCACCAGTATTGCAAACAAGCTACCAGTATTGTAGACAAGCC
* *
63760617 ACCAGTATTGTAGAA
66 ACCAATATTGCAGAA
* * * * * *
63760632 AAGCTGTCAGTATAAGTGGACAAACCACTAGTGTTGCAGACAAGCTGCCAGTATATGTGGAC-AG
1 AAGCTGCCAGTAT-AGTGGACAAACCACCAGTATTGCAAACAAGCTACCAGTAT-TGTAGACAAG
* *
63760696 TCACCAATGTTGCA-AA
64 CCACCAATATTGCAGAA
63760712 TAAGCTGC
1 -AAGCTGC
63760720 TAATACTTCC
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
80 14 0.19
81 52 0.72
82 6 0.08
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (80 bp):
AAGCTGCCAGTATAGTGGACAAACCACCAGTATTGCAAACAAGCTACCAGTATTGTAGACAAGCC
ACCAATATTGCAGAA
Found at i:63762114 original size:22 final size:25
Alignment explanation
Indices: 63762089--63762138 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 25
63762079 CAAGGTGAGT
63762089 GAAAAGAGG-AGAAAATA-AGGA-A
1 GAAAAGAGGAAGAAAATAGAGGATA
*
63762111 GAAAGGAGGAAGAAAATAGAGGATA
1 GAAAAGAGGAAGAAAATAGAGGATA
63762136 GAA
1 GAA
63762139 TCTTTGTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 8 0.33
23 8 0.33
24 4 0.17
25 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.34, T:0.06
Consensus pattern (25 bp):
GAAAAGAGGAAGAAAATAGAGGATA
Found at i:63763515 original size:44 final size:42
Alignment explanation
Indices: 63763465--63763562 Score: 124
Period size: 44 Copynumber: 2.3 Consensus size: 42
63763455 TTATGTGTTA
* * * *
63763465 TCGTGTATGACCACATCTGGGACATTGGCATCGATTTGTGATTT
1 TCGTGTAAGACCACATCTGAGACATTGGCATCG-TATATGA-TT
**
63763509 TCGTGTAAGACCATGTCTGAGACATTGGCATCGTATATGATT
1 TCGTGTAAGACCACATCTGAGACATTGGCATCGTATATGATT
63763551 TCGTGTAAGACC
1 TCGTGTAAGACC
63763563 TTGTCTGGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 14 0.29
43 5 0.10
44 29 0.60
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGAGACATTGGCATCGTATATGATT
Found at i:63763568 original size:42 final size:43
Alignment explanation
Indices: 63763480--63763620 Score: 142
Period size: 43 Copynumber: 3.3 Consensus size: 43
63763470 TATGACCACA
* * * *
63763480 TCTGGGACATTGGCATCGATTTGTGATTTTCGTGTAAGACCATG
1 TCTGAGACATTGGCATCGATATATGA-TTTCGTGTAAGACCTTG
63763524 TCTGAGACATTGGCATCG-TATATGATTTCGTGTAAGACCTTG
1 TCTGAGACATTGGCATCGATATATGATTTCGTGTAAGACCTTG
* * * * * * * *
63763566 TCTGGGATAGTGGCTTTGATATTTGATTACATGTAAGACCTTG
1 TCTGAGACATTGGCATCGATATATGATTTCGTGTAAGACCTTG
63763609 TCT-AGGACATTG
1 TCTGA-GACATTG
63763621 CGTTGTACGA
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 29 0.36
43 34 0.43
44 17 0.21
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.37
Consensus pattern (43 bp):
TCTGAGACATTGGCATCGATATATGATTTCGTGTAAGACCTTG
Found at i:63763593 original size:43 final size:42
Alignment explanation
Indices: 63763480--63763611 Score: 120
Period size: 42 Copynumber: 3.1 Consensus size: 42
63763470 TATGACCACA
* * * * *
63763480 TCTGGGACATTGGCATCGATTTGTGATTTTCGTGTAAGACCATG
1 TCTGAGACAGTGGCATCG-TATATGA-TTTCGTGTAAGACCTTG
*
63763524 TCTGAGACATTGGCATCGTATATGATTTCGTGTAAGACCTTG
1 TCTGAGACAGTGGCATCGTATATGATTTCGTGTAAGACCTTG
* * * * * * *
63763566 TCTGGGATAGTGGCTTTGATATTTGATTACATGTAAGACCTTG
1 TCTGAGACAGTGGCATCG-TATATGATTTCGTGTAAGACCTTG
63763609 TCT
1 TCT
63763612 AGGACATTGC
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
42 29 0.39
43 29 0.39
44 17 0.23
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (42 bp):
TCTGAGACAGTGGCATCGTATATGATTTCGTGTAAGACCTTG
Found at i:63765377 original size:13 final size:14
Alignment explanation
Indices: 63765359--63765397 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
63765349 TATTTAAAAA
63765359 TTATTTTGTGTG-T
1 TTATTTTGTGTGAT
63765372 TTATTTTGTGTGAAT
1 TTATTTTGTGTG-AT
63765387 TTATATTTGTG
1 TTAT-TTTGTG
63765398 AAATTTTCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.52
15 5 0.22
16 6 0.26
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (14 bp):
TTATTTTGTGTGAT
Found at i:63765559 original size:30 final size:30
Alignment explanation
Indices: 63765525--63765584 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
63765515 ATGTGGGGTG
63765525 TTTATAACGCAATTATACCCTTGGATGTTT
1 TTTATAACGCAATTATACCCTTGGATGTTT
*
63765555 TTTATAATGCAATTATACCCTTGGATGTTT
1 TTTATAACGCAATTATACCCTTGGATGTTT
63765585 GGATGGACAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (30 bp):
TTTATAACGCAATTATACCCTTGGATGTTT
Found at i:63766803 original size:23 final size:23
Alignment explanation
Indices: 63766773--63766819 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
63766763 GTGTAAAACG
63766773 AGCCATATGTCAGGTATGAATTA
1 AGCCATATGTCAGGTATGAATTA
63766796 AGCCATATGTCAGGTATGAATTA
1 AGCCATATGTCAGGTATGAATTA
63766819 A
1 A
63766820 CTTGATACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (23 bp):
AGCCATATGTCAGGTATGAATTA
Found at i:63773729 original size:42 final size:42
Alignment explanation
Indices: 63773664--63773790 Score: 146
Period size: 43 Copynumber: 3.0 Consensus size: 42
63773654 CATCAACTGG
63773664 TGATTTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATA
1 TGATTT-CGTGTAAGACCATGTCTGAGACATTGGCATCGTATA
* * * * *
63773707 TGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCTTCGATATT
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCG-TATA
* * * * *
63773750 TGACTACATGTAAGACCACGTCTGAGACATTGGCATTGTAT
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTAT
63773791 GAGCTTACGA
Statistics
Matches: 69, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTATA
Found at i:63775661 original size:27 final size:26
Alignment explanation
Indices: 63775613--63775664 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63775603 GCGAGGCTGC
*
63775613 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63775639 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63775665 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63794568 original size:27 final size:26
Alignment explanation
Indices: 63794520--63794571 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63794510 GCGAGGCTGC
*
63794520 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63794546 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63794572 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63800550 original size:47 final size:46
Alignment explanation
Indices: 63800433--63800607 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
63800423 TACAAGTGAT
* * *
63800433 ATGTGTGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCC--AC
1 ATGTGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACCTGAC
* *
63800476 ATAGTGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTGAG
1 AT-GTG--AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACCTGAC
* * *
63800525 ATGTGAGCTAGTGTCAGACCATGTCTAGGACATGGCATC-AGCTTGAC
1 ATGTGAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGA-CCTGAC
* * *
63800572 ATGTG-TC-AGTGTAAGACCTGTCTGGGACACGGCATC
1 ATGTGAGCTAGTGTAAGACATGTCTGGGACATGGCATC
63800608 AACACAAATG
Statistics
Matches: 109, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 2 0.02
44 20 0.18
45 8 0.07
46 37 0.34
47 36 0.33
48 3 0.03
49 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (46 bp):
ATGTGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACCTGAC
Found at i:63805129 original size:44 final size:43
Alignment explanation
Indices: 63805075--63805157 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 43
63805065 ATTATTATAT
*
63805075 AAATTAAATAAAAGAA-ATA-AAAGATGGAAAAGAAATAGAATTGA
1 AAATGAAATAAAAGAAGA-AGAAA-ATGG-AAAGAAATAGAATTGA
*
63805119 AAATGAAATAAAGGAAGAAGAAAATGGAAAGAAATAGAA
1 AAATGAAATAAAAGAAGAAGAAAATGGAAAGAAATAGAA
63805158 AAAGGGAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
43 12 0.34
44 19 0.54
45 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.14
Consensus pattern (43 bp):
AAATGAAATAAAAGAAGAAGAAAATGGAAAGAAATAGAATTGA
Found at i:63811244 original size:42 final size:41
Alignment explanation
Indices: 63811136--63811292 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 41
63811126 TGATATATGA
* * *
63811136 TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTT
1 TGATTTCGTGTAAGACCATGTCTGGGAC-ATGACATCGTA-TT
* *
63811178 ATGATTTACGTGTAAGACTATGTCTGGGACATCGACATTGTATT
1 -TGATTT-CGTGTAAGACCATGTCTGGGACAT-GACATCGTATT
*
63811222 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGACATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACA-TGACATCG-TATT
* * * *
63811265 TGATTACATGTAACACCATGTTTGGGAC
1 TGATTTCGTGTAAGACCATGTCTGGGAC
63811293 GTTGGCATTG
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.28
43 41 0.43
44 27 0.28
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATGACATCGTATT
Found at i:63820720 original size:40 final size:39
Alignment explanation
Indices: 63820623--63820833 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
63820613 TCTTCGGAAT
* * *
63820623 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
* * * *
63820661 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
63820701 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
63820741 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * *
63820781 TTAACCCGGATAAAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
63820821 TTAGCCCGGATAT
1 TTAGCCCGGATAT
63820834 CATTCAAATG
Statistics
Matches: 152, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 5 0.03
39 23 0.15
40 120 0.79
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:63823671 original size:93 final size:93
Alignment explanation
Indices: 63823512--63823683 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63823502 GGATGGTTGA
* *
63823512 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
63823577 TGAGTCCGAGTTCGTGAAACGTAACTAG
66 TGAGTCCGAGTTCGTGAAACGTAACTAG
* * *
63823605 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
63823670 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63823684 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAACGTAACTAG
Found at i:63823688 original size:46 final size:46
Alignment explanation
Indices: 63823516--63823690 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
63823506 GGTTGAGCAT
* * *
63823516 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* **
63823562 CCGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AAC---GC
*
63823607 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
63823655 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63823691 GCGGGTTATA
Statistics
Matches: 107, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
41 4 0.04
42 2 0.02
44 1 0.01
45 1 0.01
46 62 0.58
47 26 0.24
48 2 0.02
49 1 0.01
51 4 0.04
52 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:63825288 original size:43 final size:43
Alignment explanation
Indices: 63825192--63825356 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
63825182 TAGGATTTTT
* * * * *
63825192 GATATATGATTT-CATGTAAGACCACGTCGGGGACGTTGGCATT
1 GATATTTGATTTACATGTAAGACCAAGTCTGGGAC-ATGGCATC
* * *
63825235 GACT-TATGATTTACGTGTAAGACCAAGCCTGGGACATCGGCATC
1 GA-TATTTGATTTACATGTAAGACCAAGTCTGGGACAT-GGCATC
** *
63825279 G-TATTTGATTT-CATGTAAGACCTTGTGTGGGACAGTGGCATC
1 GATATTTGATTTACATGTAAGACCAAGTCTGGGACA-TGGCATC
*
63825321 GATATTTGA-TTACATGTAAGACCACGTCTGGGACAT
1 GATATTTGATTTACATGTAAGACCAAGTCTGGGACAT
63825357 TGGCGTACAA
Statistics
Matches: 100, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
42 29 0.29
43 46 0.46
44 25 0.25
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GATATTTGATTTACATGTAAGACCAAGTCTGGGACATGGCATC
Found at i:63844085 original size:49 final size:49
Alignment explanation
Indices: 63844013--63844112 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
63844003 CCGAGTCAGG
63844013 TATGGGGTGTTACAATGAATGTGTCAAAATTAATTAGTTAAAGTGTTGT
1 TATGGGGTGTTACAATGAATGTGTCAAAATTAATTAGTTAAAGTGTTGT
63844062 TATGGGGTGTTACAATGAATGTGTCAAAATTAATTAGTTAAAGTGTTGT
1 TATGGGGTGTTACAATGAATGTGTCAAAATTAATTAGTTAAAGTGTTGT
63844111 TA
1 TA
63844113 AAAATTAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (49 bp):
TATGGGGTGTTACAATGAATGTGTCAAAATTAATTAGTTAAAGTGTTGT
Found at i:63844152 original size:30 final size:26
Alignment explanation
Indices: 63844087--63844139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
63844077 TGAATGTGTC
*
63844087 AAAATTAATTAGTTAAAGTGTTGTTA
1 AAAATTAATTAGCTAAAGTGTTGTTA
63844113 AAAATTAATTAGCTAAAGTGTTGTTA
1 AAAATTAATTAGCTAAAGTGTTGTTA
63844139 A
1 A
63844140 TTATGAGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.02, G:0.15, T:0.40
Consensus pattern (26 bp):
AAAATTAATTAGCTAAAGTGTTGTTA
Found at i:63847377 original size:65 final size:66
Alignment explanation
Indices: 63847250--63847377 Score: 161
Period size: 65 Copynumber: 1.9 Consensus size: 66
63847240 TACTATGTGT
* * * *
63847250 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAA
63847315 GG
65 GG
* * *
63847317 ACACCATGTAGACAAGA-AGCTATGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
63847378 TTCACCATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 23 0.43
66 11 0.21
67 19 0.36
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAG
G
Found at i:63850235 original size:51 final size:51
Alignment explanation
Indices: 63850172--63850271 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 51
63850162 CTACCACATA
*
63850172 ACATGTAACACAT-TACTAATGAACTC-GTACCTCTCAACGAGCTCGGATGTT
1 ACATGTAACACATCCAC-AATGAACTCAG-ACCTCTCAACGAGCTCGGATGTT
*
63850223 ACATG-AATCACATCCACCATGAACTCAGACCTCTCAACGAGCTCGGATG
1 ACATGTAA-CACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATG
63850272 CCACATATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
50 2 0.05
51 39 0.89
52 3 0.07
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (51 bp):
ACATGTAACACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATGTT
Found at i:63855189 original size:32 final size:32
Alignment explanation
Indices: 63855153--63855218 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
63855143 TGGAAGAAAT
*
63855153 AGTAAACTCATTTTTGTATAATGGTATGTATA
1 AGTAAAATCATTTTTGTATAATGGTATGTATA
63855185 AGTAAAATCATTTTTGTATAATGGTATGTATA
1 AGTAAAATCATTTTTGTATAATGGTATGTATA
63855217 AG
1 AG
63855219 CTAACTTGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (32 bp):
AGTAAAATCATTTTTGTATAATGGTATGTATA
Found at i:63857645 original size:17 final size:18
Alignment explanation
Indices: 63857615--63857648 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63857605 TCACTTTACC
63857615 TTCTTTTCTTTTTCTTTT
1 TTCTTTTCTTTTTCTTTT
63857633 TTCTTTT-TTTTTCTTT
1 TTCTTTTCTTTTTCTTT
63857649 AAGAGTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (18 bp):
TTCTTTTCTTTTTCTTTT
Found at i:63862087 original size:41 final size:41
Alignment explanation
Indices: 63862037--63862121 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
63862027 ATTTCAATTG
63862037 AGAACATTAAAGAATTAGGATAATTAATGATTCTTATTTCC
1 AGAACATTAAAGAATTAGGATAATTAATGATTCTTATTTCC
*
63862078 AGAACATTAAAGAATTAGGCTAATTAATGATTCTTATTTCC
1 AGAACATTAAAGAATTAGGATAATTAATGATTCTTATTTCC
63862119 AGA
1 AGA
63862122 TTTTCTCTCC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (41 bp):
AGAACATTAAAGAATTAGGATAATTAATGATTCTTATTTCC
Found at i:63874691 original size:4 final size:4
Alignment explanation
Indices: 63874682--63874721 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
63874672 CATCATGCAT
63874682 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
63874722 TCAAGCAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:63881388 original size:16 final size:16
Alignment explanation
Indices: 63881367--63881421 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
63881357 TTTCTAATCA
63881367 ATGCATGTGTTATGAT
1 ATGCATGTGTTATGAT
* *
63881383 ATGCATAATCTTA-GAT
1 ATGCAT-GTGTTATGAT
*
63881399 ATG-ATTTTGTTATGAT
1 ATGCA-TGTGTTATGAT
63881415 ATGCATG
1 ATGCATG
63881422 AACTTGGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
15 5 0.17
16 20 0.67
17 5 0.17
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (16 bp):
ATGCATGTGTTATGAT
Found at i:63886367 original size:48 final size:48
Alignment explanation
Indices: 63886270--63886580 Score: 409
Period size: 48 Copynumber: 6.6 Consensus size: 48
63886260 ATGTGTAACC
* * *
63886270 GTGTAAGACCATATCTGGGACATGGCATCGGCAT-GTGA--T--CCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
* * *
63886313 -TATAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
63886360 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
* * *
63886408 GTGTAAGACCATGTCTGAGACATAGCATCGGCATCGTTATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
* * * * *
63886456 GTGTAAGACCATGTCTAGGACATCGCATTGACATTGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
* * *
63886504 ATGTAAGACCATGTTTGGGACATGGCATTGGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
* *
63886552 GTGTAAGACCATTTCTGGGACATGTCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
63886581 AACATGAGGC
Statistics
Matches: 232, Mismatches: 30, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
42 30 0.13
43 3 0.01
45 1 0.00
47 2 0.01
48 196 0.84
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
Found at i:63900647 original size:40 final size:40
Alignment explanation
Indices: 63900587--63900807 Score: 225
Period size: 40 Copynumber: 5.5 Consensus size: 40
63900577 CATTTGAATG
*
63900587 ATATCCGGGCTAAG-TCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGATT
* * * *
63900627 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGATT
* * * *
63900667 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGATT
* * * * *
63900707 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGATT
* * * *
63900747 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGATT
63900787 ATATCC-GGCTAA-ATTCCGAAG
1 ATATCCGGGCTAAGA-TCCGAAG
63900808 AAACTTGGGT
Statistics
Matches: 144, Mismatches: 33, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.10
40 126 0.88
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGATT
Found at i:63900724 original size:80 final size:80
Alignment explanation
Indices: 63900591--63900807 Score: 330
Period size: 80 Copynumber: 2.7 Consensus size: 80
63900581 TGAATGATAT
*
63900591 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
* *
63900656 TGCGAGTTGCTATAC
66 TGCGAGTTACTAAAC
*
63900671 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
*
63900736 TGCGAGTTACTAAAT
66 TGCGAGTTACTAAAC
* * * *
63900751 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGG-CTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGA-TCCGAAG
63900808 AAACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
78 1 0.01
79 11 0.09
80 114 0.90
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAAC
Found at i:63914713 original size:13 final size:13
Alignment explanation
Indices: 63914691--63914726 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
63914681 GGTCAGCCCA
63914691 TGGGCATGTGATC
1 TGGGCATGTGATC
*
63914704 TGGGCGTGTGATC
1 TGGGCATGTGATC
*
63914717 TGGCCATGTG
1 TGGGCATGTG
63914727 TCCCCTGCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.17, G:0.42, T:0.31
Consensus pattern (13 bp):
TGGGCATGTGATC
Found at i:63917242 original size:27 final size:26
Alignment explanation
Indices: 63917211--63917262 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
63917201 AAATGGTGAC
*
63917211 CGAAATACCCTCATAGGGTAAAATGAT
1 CGAAATACCCT-ATAAGGTAAAATGAT
*
63917238 CGAAATACCCTGTAAGGTAAAATGA
1 CGAAATACCCTATAAGGTAAAATGA
63917263 CTTGGGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.21
Consensus pattern (26 bp):
CGAAATACCCTATAAGGTAAAATGAT
Found at i:63917324 original size:81 final size:81
Alignment explanation
Indices: 63917183--63917425 Score: 391
Period size: 81 Copynumber: 3.0 Consensus size: 81
63917173 TTAGGCTGTT
63917183 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCTCATAGGGTAAAATGA-TCGAAATACC
1 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCTCATAGGGTAAAATGACT-GAAATACC
63917247 CTGTAAGGTAAAATGAC
65 CTGTAAGGTAAAATGAC
* *
63917264 TTGGGCCATGTTAGGCCGAAATGGTAACTGAAATACCCTCATAGGGTAAAATGACTGAAATACCC
1 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCC
*
63917329 TGTAGGGTAAAATGAC
66 TGTAAGGTAAAATGAC
* * * *
63917345 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCCCATAGGGCAAAATGACCGAAATACCT
1 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCC
63917410 TGT-AGTGTAAAATGAC
66 TGTAAG-GTAAAATGAC
63917426 CAAAATACCC
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
80 1 0.01
81 148 0.99
82 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (81 bp):
TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCC
TGTAAGGTAAAATGAC
Found at i:63917341 original size:26 final size:27
Alignment explanation
Indices: 63917290--63917507 Score: 108
Period size: 27 Copynumber: 8.1 Consensus size: 27
63917280 CGAAATGGTA
63917290 ACTGAAATACCCTCATAGGGTAAAATG
1 ACTGAAATACCCTCATAGGGTAAAATG
*
63917317 ACTGAAATACCCT-GTAGGGTAAAATG
1 ACTGAAATACCCTCATAGGGTAAAATG
** * ** *
63917343 ACTTG---GGCCATGTTAGGCCG-AAATGGTG
1 AC-TGAAATACCCTCATAGG--GTAAA--ATG
* * *
63917371 ACCGAAATACCCCCATAGGGCAAAATG
1 ACTGAAATACCCTCATAGGGTAAAATG
* ** *
63917398 ACCGAAATA-CCTTGTAGTGTAAAATG
1 ACTGAAATACCCTCATAGGGTAAAATG
** *
63917424 ACCAAAATACCCCCATAGGGTAAAATG
1 ACTGAAATACCCTCATAGGGTAAAATG
* * * *
63917451 ACTG-TATGACCCCCGTAAGGTAAAATG
1 ACTGAAAT-ACCCTCATAGGGTAAAATG
* * * *
63917478 ACTGTATTACCCTTATAAGGTAAAATG
1 ACTGAAATACCCTCATAGGGTAAAATG
63917505 ACT
1 ACT
63917508 AATTTGCCTT
Statistics
Matches: 144, Mismatches: 34, Indels: 26
0.71 0.17 0.13
Matches are distributed among these distances:
24 3 0.02
25 4 0.03
26 39 0.27
27 83 0.58
28 6 0.04
29 3 0.02
30 6 0.04
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (27 bp):
ACTGAAATACCCTCATAGGGTAAAATG
Found at i:63919824 original size:47 final size:45
Alignment explanation
Indices: 63919682--63919842 Score: 137
Period size: 46 Copynumber: 3.5 Consensus size: 45
63919672 GATGAGTGCT
* * * * * *
63919682 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTAAACT
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTCGAGATGTGAGCC
* * * *
63919728 AGTGTAAGACATGTATGGGACATGCGTCGACTACGAAATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACT-CGAGATG-TGAGCC
* *
63919774 AGTGTAAGACCATGTCTGGGACATGACTTCGACTTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGACTCGAGATGTGAGCC
*
63919821 AGTGTAA-ATCGTGTCTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
63919843 CGGCATCGGC
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
45 3 0.03
46 55 0.58
47 30 0.32
48 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTCGAGATGTGAGCC
Found at i:63922791 original size:46 final size:46
Alignment explanation
Indices: 63922741--63922886 Score: 240
Period size: 46 Copynumber: 3.2 Consensus size: 46
63922731 TCATCTTATA
63922741 GCCGATGCATGTCTCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCTCAGACATGTCTTACACTAGCTTACGTCTCGAG
63922787 GCCGATGCATGTCTCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCTCAGACATGTCTTACACTAGCTTACGTCTCGAG
* * * *
63922833 GCCGATGCATGTCCCATACATGTCTTACACTAGCACT-CGTCTCGAT
1 GCCGATGCATGTCTCAGACATGTCTTACACTAGC-TTACGTCTCGAG
63922879 GCCGATGC
1 GCCGATGC
63922887 CGTGTCGAAG
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
46 94 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCTCAGACATGTCTTACACTAGCTTACGTCTCGAG
Found at i:63932031 original size:55 final size:55
Alignment explanation
Indices: 63931910--63932035 Score: 148
Period size: 55 Copynumber: 2.3 Consensus size: 55
63931900 TGCAAGCCCC
** * **
63931910 ACGCCCGTGTTAATTTAACAGGTTCGACCACGAGTGTTCCACGTGGGCGTGTCGA
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGAGTCTTCCACACGGGCGTGTCGA
* *
63931965 ACGCCCGTGTTGTTTTAACATGTTCGCCCACG-GTTCTTCCACACGGGCGTGTC-A
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGAG-TCTTCCACACGGGCGTGTCGA
*
63932019 CATGCCCGTGTTGTTTT
1 -ACGCCCGTGTTGTTTT
63932036 GGTAGGCTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
54 2 0.03
55 59 0.97
ACGTcount: A:0.16, C:0.28, G:0.26, T:0.30
Consensus pattern (55 bp):
ACGCCCGTGTTGTTTTAACAGGTTCGACCACGAGTCTTCCACACGGGCGTGTCGA
Found at i:63939007 original size:46 final size:46
Alignment explanation
Indices: 63938920--63939041 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 46
63938910 CATCTTATAA
* * * *
63938920 CCGATACATGTCCCAAACATGTGTTACACTAACTTATGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGAGG
*
63938966 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC-T-CGTCTCGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTA--ACTTACGTCTCGAGG
* *
63939012 CTGATGCTGTGTCCCAGACATGGTCTTACA
1 CCGATGC-ATGTCCCAGACAT-GTCTTACA
63939042 TTGGCTCTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 42 0.65
47 13 0.20
48 10 0.15
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGAGG
Found at i:63944534 original size:27 final size:27
Alignment explanation
Indices: 63944499--63944636 Score: 161
Period size: 27 Copynumber: 5.1 Consensus size: 27
63944489 GCCGAAATGG
63944499 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* * *
63944526 TGACTGAAAT-TCCCCATAGGGTAAAT
1 TGACCGAAATACCCCCATAGGGTAAAA
* * *
63944552 TGACCAAAATACCCTCATAAGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
63944579 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* * * ** *
63944606 TGATCGTATTACCCCTGTAAGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
63944633 TGAC
1 TGAC
63944637 TGTATTACCC
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 22 0.24
27 69 0.76
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.21
Consensus pattern (27 bp):
TGACCGAAATACCCCCATAGGGTAAAA
Found at i:63944641 original size:27 final size:27
Alignment explanation
Indices: 63944569--63944668 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
63944559 AATACCCTCA
* * * **
63944569 TAAGGTAAAATGACCGAAATACCCCCA
1 TAAGGTAAAATGACTGTATTACCCCTG
*
63944596 TAGGGTAAAATGA-TCGTATTACCCCTG
1 TAAGGTAAAATGACT-GTATTACCCCTG
*
63944623 TAAGGTAAAATGACTGTATTACCCTTG
1 TAAGGTAAAATGACTGTATTACCCCTG
63944650 TAAGGTAAAATGACT-TATT
1 TAAGGTAAAATGACTGTATT
63944669 TGCCCTACGA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
26 4 0.06
27 58 0.92
28 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (27 bp):
TAAGGTAAAATGACTGTATTACCCCTG
Found at i:63945999 original size:45 final size:45
Alignment explanation
Indices: 63945950--63946046 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 45
63945940 CTCACTTCCG
* * *
63945950 TCATGATGCCATAGCGTCTTT-AAGTTACGGTCTTACTCATTTGAA
1 TCATGATGCCATAACATCTTTCAA-CTACGGTCTTACTCATTTGAA
* * **
63945995 TCATGATGTCATAACATCTTTCAACTATGGTCTTACTTGTTTGAA
1 TCATGATGCCATAACATCTTTCAACTACGGTCTTACTCATTTGAA
63946040 TCATGAT
1 TCATGAT
63946047 TAACCTACTC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 42 0.95
46 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (45 bp):
TCATGATGCCATAACATCTTTCAACTACGGTCTTACTCATTTGAA
Found at i:63946424 original size:20 final size:19
Alignment explanation
Indices: 63946399--63946446 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
63946389 CACATATTTG
* *
63946399 ACCTTTTATCAATATTTTAT
1 ACCTTTTATCAAAACTTT-T
63946419 ACC-TTTACTCAAAACTTTT
1 ACCTTTTA-TCAAAACTTTT
63946438 ACCTTTTAT
1 ACCTTTTAT
63946447 ATAATTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (19 bp):
ACCTTTTATCAAAACTTTT
Found at i:63949395 original size:54 final size:54
Alignment explanation
Indices: 63949336--63949501 Score: 226
Period size: 54 Copynumber: 3.1 Consensus size: 54
63949326 AGCATGGCTG
* ** *
63949336 CCAGAACAGACA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
63949390 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * * * * *
63949444 CTAGAGCAGATATATGTGGCAGAGCCACCAGATCAAATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
63949498 CCAG
1 CCAG
63949502 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 83 0.83
55 17 0.17
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:63949398 original size:27 final size:26
Alignment explanation
Indices: 63949336--63949501 Score: 179
Period size: 27 Copynumber: 6.2 Consensus size: 26
63949326 AGCATGGCTG
* ** *
63949336 CCAGAACAGACAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
63949362 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
63949390 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
63949417 CCAGATCAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
* *
63949444 CTAGAGCAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
63949471 CCAGATCAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
63949498 CCAG
1 CCAG
63949502 GACGCTTCCT
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
26 7 0.06
27 98 0.80
28 18 0.15
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:63951115 original size:26 final size:26
Alignment explanation
Indices: 63951084--63951165 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
63951074 TGAAATGCCC
*
63951084 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
63951110 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63951136 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63951162 ATCA
1 ATCA
63951166 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63955932 original size:40 final size:40
Alignment explanation
Indices: 63955858--63956078 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
63955848 AAACCAAGTA
** * *
63955858 CCTTCGGGGTTTAGCCGGA-TATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATTATAG-TAACTCGCACAAATG
*
63955897 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
* *
63955937 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
*
63955977 CCTTCGGGACTTAGCCCGGA-TAT-GATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCC-GATTATAG-TAACTCGCACAAATG
* * *
63956017 CCTTCGGG-CTTAGCCCGGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
* *
63956056 CCTTTGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGATTAT
63956079 CATCCGAATA
Statistics
Matches: 159, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 51 0.32
40 107 0.67
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
Found at i:63964026 original size:30 final size:32
Alignment explanation
Indices: 63963960--63964055 Score: 88
Period size: 34 Copynumber: 2.8 Consensus size: 32
63963950 GGATATAGCT
*
63963960 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 ACTCGCACAAATGCCTTCGGGACTTA------TTATAG
63963998 -C-CGCACAAATGCCTTCGGGACTTATTATAG
1 ACTCGCACAAATGCCTTCGGGACTTATTATAG
*
63964028 TAACTCGCACAAATGCCTTCTGGACTTA
1 --ACTCGCACAAATGCCTTCGGGACTTA
63964056 GCCCGGATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
30 6 0.12
33 1 0.02
34 22 0.42
36 22 0.42
37 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (32 bp):
ACTCGCACAAATGCCTTCGGGACTTATTATAG
Found at i:63964085 original size:40 final size:39
Alignment explanation
Indices: 63964026--63964140 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 39
63964016 GACTTATTAT
63964026 AGTAACTCGCACAAATGCCTTCTGGACTTAGCCCGGATATG
1 AGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGA-ATG
* * *
63964067 A-TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGAATT
1 AGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAATG
* *
63964105 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 AGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGG
63964141 TTATCATCCG
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
38 3 0.05
39 30 0.46
40 31 0.48
41 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
AGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAATG
Found at i:63964117 original size:39 final size:40
Alignment explanation
Indices: 63964025--63964140 Score: 155
Period size: 39 Copynumber: 2.9 Consensus size: 40
63964015 GGACTTATTA
*
63964025 TAGTAACTCGCACAAATGCCTTCTGGACTTAGCCCGGATAT
1 TAGTAACTCGCACAAATGCCTTC-GGGCTTAGCCCGGATAT
* *
63964066 GA-TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGA-AT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATAT
* *
63964104 TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
63964141 TTATCATCCG
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
38 3 0.05
39 33 0.50
40 29 0.44
41 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATAT
Found at i:63964132 original size:79 final size:70
Alignment explanation
Indices: 63963967--63964144 Score: 196
Period size: 79 Copynumber: 2.4 Consensus size: 70
63963957 GCTACTCGCT
* **
63963967 CAAATGCCTTCGGGACTTAGCCCGGTTATAGCCGCACAAATGCCTTCGGGACTTATTATAGTAAC
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAACCGCACAAATGCCTTCGGGACTTAGAATAGTAAC
*
63964032 TCGCA
66 TAGCA
* *
63964037 CAAATGCCTTCTGGACTTAGCCCGGATATGATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-T-T-ATAAC-CGCACAAATGCCTTCGGGACTTA-----G
*
63964101 AATTAGTCACTAGCA
57 AA-TAGTAACTAGCA
63964116 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63964145 CATCCGAATA
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
70 24 0.27
71 1 0.01
72 1 0.01
73 8 0.09
74 17 0.19
76 2 0.02
77 1 0.01
78 2 0.02
79 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (70 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAACCGCACAAATGCCTTCGGGACTTAGAATAGTAAC
TAGCA
Found at i:63967192 original size:27 final size:26
Alignment explanation
Indices: 63967155--63967320 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 26
63967145 AGCATGGCTG
* *
63967155 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
63967181 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
63967209 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
63967236 CCAGATCAGATAATCATGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
63967263 CCAGAGCAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
63967290 CCAGATCAGATATTTATGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
63967317 CCAG
1 CCAG
63967321 GACGCTTCCT
Statistics
Matches: 125, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
26 7 0.06
27 99 0.79
28 19 0.15
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:63967214 original size:54 final size:54
Alignment explanation
Indices: 63967155--63967320 Score: 253
Period size: 54 Copynumber: 3.1 Consensus size: 54
63967145 AGCATGGCTG
* * *
63967155 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
63967209 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
* * * *
63967263 CCAGAGCAGATATATGTGGCAGAGCCACCAGATCAGATATTTATGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
63967317 CCAG
1 CCAG
63967321 GACGCTTCCT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 86 0.83
55 18 0.17
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:63967290 original size:81 final size:81
Alignment explanation
Indices: 63967155--63967320 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
63967145 AGCATGGCTG
* *
63967155 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAGAACAGAT
1 CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAACAGAT
*
63967220 ATATGTGGCAGAGCCA
66 ATATATGGCAGAGCCA
* * * *
63967236 CCAGATCAGATAATCATGGCAGAGCCACCAGA-GCAGATATAT-GTGGCAGAGCCACCAGATCAG
1 CCAGAACAGATAAT-ATGACAGAGCCACCAGATACAGATA-ATCGTGGCAGAGCCACCAGAACAG
* *
63967299 ATATTTATGGCATAGCCA
64 ATATATATGGCAGAGCCA
63967317 CCAG
1 CCAG
63967321 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 58 0.78
82 16 0.22
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (81 bp):
CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAACAGAT
ATATATGGCAGAGCCA
Found at i:63969009 original size:26 final size:26
Alignment explanation
Indices: 63968902--63969007 Score: 185
Period size: 26 Copynumber: 4.1 Consensus size: 26
63968892 TGAAATGTCC
63968902 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63968928 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
63968954 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63968980 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63969006 AT
1 AT
63969008 TAATTTGTAC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63969529 original size:5 final size:5
Alignment explanation
Indices: 63969519--63969551 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
63969509 CTATGTGTTC
63969519 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
63969552 TTACAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:63973956 original size:5 final size:5
Alignment explanation
Indices: 63973946--63973973 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
63973936 CTGTGTGTTC
63973946 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
63973974 TCATAGTGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:63981531 original size:102 final size:103
Alignment explanation
Indices: 63981333--63981596 Score: 408
Period size: 102 Copynumber: 2.6 Consensus size: 103
63981323 TAACCGTTAT
* *
63981333 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
**
63981398 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTACATTTCAAAGATA
63981436 TGGTGGATATCGCACTTAGCACCACCAATGAATC-GGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
63981499 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATA
* * * **
63981538 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
63981597 TTTATATACA
Statistics
Matches: 149, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
101 28 0.19
102 66 0.44
103 55 0.37
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTACATTTCAAAGATA
Found at i:63988972 original size:26 final size:26
Alignment explanation
Indices: 63988942--63988993 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
63988932 CACCAATGAA
*
63988942 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
63988968 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
63988994 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:63989047 original size:103 final size:102
Alignment explanation
Indices: 63988809--63989071 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 102
63988799 TAACCGTTAT
63988809 TGGTGGATC-CGCACTTAGCACCA-CCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCACGCACTTAGCACCACCCA-TGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
63988872 GAATCAGCACATAGCAACCCCCTTTTATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
*
63988910 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATCA-CGCACTTAGCACCACCCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
63988973 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
* * **
63989013 TGGTGGATCACGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCCATGAATCGGGGAATCAGCACTTAGCAACCCCT
63989072 TTTATATACA
Statistics
Matches: 149, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
101 36 0.24
102 46 0.31
103 66 0.44
104 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (102 bp):
TGGTGGATCACGCACTTAGCACCACCCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
Found at i:63989433 original size:29 final size:29
Alignment explanation
Indices: 63989400--63989463 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
63989390 TAATCCACCA
63989400 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
63989429 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
63989459 CCCAA
1 CCCAA
63989464 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:63989437 original size:30 final size:30
Alignment explanation
Indices: 63989407--63989463 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63989397 CCACCCAACT
63989407 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
63989436 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
63989464 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:63990578 original size:58 final size:58
Alignment explanation
Indices: 63990499--63990672 Score: 194
Period size: 58 Copynumber: 3.0 Consensus size: 58
63990489 CAAATAGGAT
*
63990499 TATTAGTTTGCGAGTTATTTTGAGCTTAAGGAAAATTTCTAAAATCAATCA-TTGGGAA
1 TATTAGTTTGCGAGTTATTTTGAGCTTAAGGAAAATTTCTAAAATCAAT-AGCTGGGAA
* * *
63990557 TATTAGTTTGTGAGTTGTTTTG-GACTTTAAGG-AAATCGTCTAAAATCAATAGCTGGGAA
1 TATTAGTTTGCGAGTTATTTTGAG-C-TTAAGGAAAAT-TTCTAAAATCAATAGCTGGGAA
** * * *
63990616 TATTAGTTCACGAGCTATTTTGAGCTTAA-GAAGATTTTCTAAAATCAATAACTGGGA
1 TATTAGTTTGCGAGTTATTTTGAGCTTAAGGAA-AATTTCTAAAATCAATAGCTGGGA
63990673 GTTTTTAACT
Statistics
Matches: 97, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
57 2 0.02
58 50 0.52
59 44 0.45
60 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (58 bp):
TATTAGTTTGCGAGTTATTTTGAGCTTAAGGAAAATTTCTAAAATCAATAGCTGGGAA
Found at i:63990886 original size:70 final size:70
Alignment explanation
Indices: 63990737--63991767 Score: 425
Period size: 70 Copynumber: 14.7 Consensus size: 70
63990727 AGAAAGATAG
* * *
63990737 CTGGGAGCTTTTAACTCTTGCTAACTATTTGGGGGGCTGCGG-CCTTAAACCTGTGAGCCTTAAT
1 CTGGGAGCTTTTAACTCTTGCTAACTATTT-AGGGGCTGCGGTACTT-TACCTGTGAGCCTTAAT
*
63990801 AATGATA-
64 -ATGACAT
* * * * * *
63990808 CTGAGAGCTTTTAACTCTCGTTAACTATTTGGGGGCT-CTGGTACTTCACTTGTGAGCCTTAATA
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGC-GGTACTTTACCTGTGAGCCTTAATA
63990872 TGACAT
65 TGACAT
* * * *
63990878 TTGGGAGCTTTGAACTCTTGCTAACTATTTAGGGGTTGCGGTACTTTACCTGTAAGCCTTAATAT
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATAT
*
63990943 TACAT
66 GACAT
* * * * *
63990948 CTGGGAGCTTTGAACTTTTGCTAACTATTTAAGGGTTGCGATACTTTACCTGTGAGCCTTAATA-
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATAT
*
63991012 GTACAA
66 G-ACAT
* * * * * * **
63991018 CTAGAAGCTTTTAACTCTCGCTAACTATTTAGGGGTTGGGGTACTTTACCTGCGAGTGTTAATAT
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATAT
* ***
63991083 TATGG
66 GACAT
* ** * * * * * * * **
63991088 ATAAGAGCTTTGAAATCTTGCTAACTGTTTAGGGGCTACGGTA-TTGAACTTGTGAG-CTTGAGG
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTT-TACCTGTGAGCCTTAATA
* * *
63991151 TTATAG
65 TGACAT
* * * * * * * **
63991157 CTAGGAGC-TTCAGGC-CTCGCTAACTATTCT-GGAGGTTGCGGTATTTTACTTACGAGCCTTAA
1 CTGGGAGCTTTTA-ACTCTTGCTAACTATT-TAGG-GGCTGCGGTACTTTACCTGTGAGCCTTAA
* * *
63991219 CATTACAA
63 TATGACAT
* * * * * * **
63991227 CTAGGG-GCTTTGAACTCTCGCTAACTATTTGGGAGGTTGTGGTA-TTGAACCTACGAGCCTTAA
1 CT-GGGAGCTTTTAACTCTTGCTAACTATTTAGG-GGCTGCGGTACTT-TACCTGTGAGCCTTAA
63991290 TAATGACAGT
63 T-ATGACA-T
* ** * * * * * ** *
63991300 -TGAGAGCTTTTAACTCTCACTAATTGTTTGGGGGGCTGTGGTA-TTGAACCTACGAGCCTTAAC
1 CTGGGAGCTTTTAACTCTTGCTAACTATTT-AGGGGCTGCGGTACTT-TACCTGTGAGCCTTAAT
*
63991363 ATTACAT
64 ATGACAT
* * ** * * * **
63991370 TTGGGAGC-TTTAGCTCTCACTAACTGTTTCGGAGGCTGCGGTATTTTACCTACGAGCCTT-ATA
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGG-GGCTGCGGTACTTTACCTGTGAGCCTTAATA
*
63991433 TTACAAT
65 TGAC-AT
* * * ** * * * *
63991440 -TGAGAGCTTTAAACTCTTGCTAACTATTTGGGGGCTATGATA-TTAAACT-TACAAGCCTTAAC
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTTTACCTGT--GAGCCTTAA-
* *
63991502 AATGACAG
63 TATGACAT
* * * * * * *
63991510 CTGAGAGCTTTTAACTCTCGCTAACTGTTTGGTGGGCTGCGGTA-TTAAACCTGCGAGTCTTAAT
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAG-GGGCTGCGGTACTT-TACCTGTGAGCCTTAAT
*
63991574 AATGA-GT
64 -ATGACAT
* * * * * * *
63991581 -TGGGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTACAGTACTTTACCTATTAGCCTTAATC
1 CTGGGAGCTTTTAACTCTTGCTAACTATTT-AGGGGCTGCGGTACTTTACCTGTGAGCCTTAATA
* * *
63991645 TAATAG
65 TGACAT
* * * * * * * * *
63991651 ATGAGAGCTTTGAACTCTCGCTAACCATTT-GAAGGCTACGGTTCTTTACCTGTAAGCCTTAATA
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAG-GGGCTGCGGTACTTTACCTGTGAGCCTTAATA
* *
63991715 TTACAG
65 TGACAT
*** * ** * *
63991721 CTAAAAGCTTTAAACTCTCACTAACTGTTTAGGGGCTGCAGTA-TTTA
1 CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTTTA
63991768 ACATACTAGC
Statistics
Matches: 755, Mismatches: 164, Indels: 84
0.75 0.16 0.08
Matches are distributed among these distances:
68 21 0.03
69 72 0.10
70 427 0.57
71 153 0.20
72 75 0.10
73 7 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (70 bp):
CTGGGAGCTTTTAACTCTTGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATAT
GACAT
Found at i:63991517 original size:211 final size:213
Alignment explanation
Indices: 63991187--63991781 Score: 546
Period size: 211 Copynumber: 2.8 Consensus size: 213
63991177 TAACTATTCT
* * * *
63991187 GGAGGTTGCGGTATTTTACTTACGAGCCTTAACATTACAACTAGGGGCTTTGAACTCTCGCTAAC
1 GGAGGCTGCGGTATTTTACCTACGAGCCTTAACATTACAACTAGGAGCTTTAAACTCTCGCTAAC
* * * * * * *
63991252 TATTTGGGAGGTTGTGGTATTGAACCTACGAGCCTTAATAATGACAGTTGAGAGCTTTTAACTCT
66 TATTTGGGAGGCTATGATATTAAACCTACAAGCCTTAACAATGACAGCTGAGAGCTTTTAACTCT
* * *
63991317 CACTAATTGTTTGGGGGGCTGTGGTATTGAACCTACGAGCCTTAACATTACATTTGGGAGCTTTA
131 CACTAACTGTTTGGGGGGCTGCGGTATTAAACCTACGAGCCTTAACATTACATTTGGGAGCTTTA
63991382 GCTCTCACTAACTGTTTC
196 GCTCTCACTAACTGTTTC
* * *
63991400 GGAGGCTGCGGTATTTTACCTACGAGCCTT-ATATTACAA-TTGAGAGCTTTAAACTCTTGCTAA
1 GGAGGCTGCGGTATTTTACCTACGAGCCTTAACATTACAACTAG-GAGCTTTAAACTCTCGCTAA
*
63991463 CTATTTGGG-GGCTATGATATTAAACTTACAAGCCTTAACAATGACAGCTGAGAGCTTTTAACTC
65 CTATTTGGGAGGCTATGATATTAAACCTACAAGCCTTAACAATGACAGCTGAGAGCTTTTAACTC
* * * * * * * *
63991527 TCGCTAACTGTTTGGTGGGCTGCGGTATTAAACCTGCGAGTCTTAATAAT-GAGTTGGGAGCTTT
130 TCACTAACTGTTTGGGGGGCTGCGGTATTAAACCTACGAGCCTTAACATTACATTTGGGAGC-TT
* * * *
63991591 TAACTCTCGCTAACTATTTG
194 TAGCTCTCACTAACTGTTTC
* * * * ** * * *
63991611 GGGGGCTACAGTACTTTACCTATTAGCCTTAATCTAATA-GA-T-GAGAGCTTTGAACTCTCGCT
1 GGAGGCTGCGGTATTTTACCTACGAGCCTTAA-C-ATTACAACTAG-GAGCTTTAAACTCTCGCT
* * * * ** ** * * * * *
63991673 AACCATTT-GAAGGCTACGGT-TCTTTACCTGTAAGCCTTAA-TATTACAGCTAAAAGCTTTAAA
63 AACTATTTGGGAGGCTATGATAT-TAAACCTACAAGCCTTAACAATGACAGCTGAGAGCTTTTAA
* * * * *
63991735 CTCTCACTAACTGTTT-AGGGGCTGCAGTATTTAACATACTAGCCTTA
127 CTCTCACTAACTGTTTGGGGGGCTGCGGTATTAAACCTACGAGCCTTA
63991782 GAAATAATCT
Statistics
Matches: 311, Mismatches: 64, Indels: 17
0.79 0.16 0.04
Matches are distributed among these distances:
210 32 0.10
211 166 0.53
212 80 0.26
213 30 0.10
214 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (213 bp):
GGAGGCTGCGGTATTTTACCTACGAGCCTTAACATTACAACTAGGAGCTTTAAACTCTCGCTAAC
TATTTGGGAGGCTATGATATTAAACCTACAAGCCTTAACAATGACAGCTGAGAGCTTTTAACTCT
CACTAACTGTTTGGGGGGCTGCGGTATTAAACCTACGAGCCTTAACATTACATTTGGGAGCTTTA
GCTCTCACTAACTGTTTC
Found at i:63991656 original size:141 final size:137
Alignment explanation
Indices: 63991233--63991675 Score: 399
Period size: 141 Copynumber: 3.1 Consensus size: 137
63991223 ACAACTAGGG
* * * *
63991233 GCTTTGAACTCTCGCTAACTATTTGGGAGGTTGTGGTATTGAACCTACGAGCCTTAATAATGACA
1 GCTTTGAACTCTCGCTAACTGTTTGGG-GGCTGCGGTATTAAACCTACGAGCCTTAATAATG--A
* * * ** * *
63991298 GTTGAGAGCTTTTAACTCTCACTAATTGTTTGGGGGGCTGTGGTATTGAACCTACGAGCCTTAAC
63 GTTGAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCT-AAGTATTAAACCTACAAGCCTTAAC
* * *
63991363 ATTACATTTGGGA
127 AATAGA--TGAGA
* * * ** * * *
63991376 GCTTT-AGCTCTCACTAACTGTTTCGGAGGCTGCGGTATTTTACCTACGAGCCTT-ATATTACAA
1 GCTTTGAACTCTCGCTAACTGTTT-GGGGGCTGCGGTATTAAACCTACGAGCCTTAATAAT-GAG
* * * *
63991439 TTGAGAGCTTTAAACTCTTGCTAACTATTT-GGGGGCTATGATATTAAACTTACAAGCCTTAACA
64 TTGAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTAAG-TATTAAACCTACAAGCCTTAACA
*
63991503 ATGACAGCTGAGA
128 AT---AGATGAGA
* * *
63991516 GCTTTTAACTCTCGCTAACTGTTTGGTGGGCTGCGGTATTAAACCTGCGAGTCTTAATAATGAGT
1 GCTTTGAACTCTCGCTAACTGTTTGG-GGGCTGCGGTATTAAACCTACGAGCCTTAATAATGAGT
* * **
63991581 TGGGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTACAGTACTT-TACCTATTAGCCTTAATC
65 TGAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTA-AGTA-TTAAACCTACAAGCCTTAA-C
63991645 TAATAGATGAGA
127 -AATAGATGAGA
63991657 GCTTTGAACTCTCGCTAAC
1 GCTTTGAACTCTCGCTAAC
63991676 CATTTGAAGG
Statistics
Matches: 241, Mismatches: 45, Indels: 30
0.76 0.14 0.09
Matches are distributed among these distances:
138 1 0.00
139 28 0.12
140 37 0.15
141 96 0.40
142 65 0.27
143 11 0.05
144 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (137 bp):
GCTTTGAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTACGAGCCTTAATAATGAGTT
GAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTAAGTATTAAACCTACAAGCCTTAACAATA
GATGAGA
Done.