Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 186 of 311
Found at i:63994319 original size:79 final size:81
Alignment explanation
Indices: 63994176--63994358 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
63994166 TACTCGTTCA
* *
63994176 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGA
* *
63994240 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
*
63994256 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCCG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CG
* *
63994317 GATATGGTCACTTAGCAC
64 GATATAGTAACTTAGCAC
*
63994335 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63994359 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 5 0.06
79 57 0.63
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGA
TATAGTAACTTAGCAC
Found at i:63994358 original size:40 final size:40
Alignment explanation
Indices: 63994155--63994358 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
63994145 CGGAATTTAA
** *
63994155 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63994195 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63994235 TCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63994274 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
63994314 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63994354 CCGGA
1 CCGGA
63994359 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63997156 original size:25 final size:25
Alignment explanation
Indices: 63997102--63997169 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
63997092 GCGATAAACA
* * *
63997102 GTAAGCTCCTCCGAGCTGAATATTG
1 GTAAGCTCATACGAGCTGAATATCG
*
63997127 ATAAGCTCATACGAGCTGCAA-ATCG
1 GTAAGCTCATACGAGCTG-AATATCG
*
63997152 GTAAGCTCATATGAGCTG
1 GTAAGCTCATACGAGCTG
63997170 TGGTGAGTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 34 0.94
26 2 0.06
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAATATCG
Found at i:64005108 original size:43 final size:43
Alignment explanation
Indices: 64005035--64005190 Score: 204
Period size: 43 Copynumber: 3.6 Consensus size: 43
64005025 GAAGCACCGT
* * * *
64005035 TAAAGAACGTGACCTTTAATGGTGCTTTTCACACAGATGCCGC
1 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
* ** * *
64005078 TGAAGAATGTGACCTTTAGTGGCGCCTTTCACACAAATGCCAC
1 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
*
64005121 TAAAGAACATGACCTTTAGTGGCACTTTTCACACAAATGCCGC
1 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
* *
64005164 TAAATAACATGACCTTTAGTTGCGCTT
1 TAAAGAACATGACCTTTAGTGGCGCTT
64005191 CTACAAAAAC
Statistics
Matches: 97, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
Found at i:64006036 original size:13 final size:14
Alignment explanation
Indices: 64006010--64006038 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
64006000 ACTAACGACA
64006010 AATTAAACCATTAT
1 AATTAAACCATTAT
64006024 AATTAAA-CATTAT
1 AATTAAACCATTAT
64006037 AA
1 AA
64006039 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:64009642 original size:30 final size:31
Alignment explanation
Indices: 64009562--64009644 Score: 98
Period size: 30 Copynumber: 2.7 Consensus size: 31
64009552 TCAATCTCAA
*
64009562 CATAT-ACTAGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
64009592 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* **
64009622 CATATCATTGGGTTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
64009645 ACTGTAAAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 24 0.53
31 21 0.47
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:64009935 original size:26 final size:25
Alignment explanation
Indices: 64009865--64009935 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
64009855 CTCTTTTAAT
*
64009865 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
64009890 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
64009915 AATTAGGGCAAAAGCCCTTTT
1 AACTAGGGC-AAAGCCCTTTT
64009936 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 29 0.73
26 11 0.28
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:64017568 original size:30 final size:31
Alignment explanation
Indices: 64017490--64017572 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 31
64017480 TCAATCTCAA
*
64017490 CATAT-ACTAGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
64017520 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
64017550 CATATCATTGGGCGGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
64017573 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 25 0.54
31 21 0.46
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:64017818 original size:24 final size:24
Alignment explanation
Indices: 64017785--64017863 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 24
64017775 GGCCTAGCCT
*
64017785 CTTTTAAT-AACTGGGGCAAAACC
1 CTTTTGATAAACTGGGGCAAAACC
*
64017808 CGTTTTGATAAACTGGGGCAAAGCC
1 C-TTTTGATAAACTGGGGCAAAACC
* *
64017833 CTTTTCGGTAAACTAGGGCAAAATCC
1 CTTTT-GATAAACTGGGGCAAAA-CC
64017859 CTTTT
1 CTTTT
64017864 ACACTTCCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.02
24 10 0.21
25 29 0.62
26 7 0.15
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
CTTTTGATAAACTGGGGCAAAACC
Found at i:64017821 original size:25 final size:25
Alignment explanation
Indices: 64017793--64017863 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
64017783 CTCTTTTAAT
64017793 AACTGGGGCAAAACCCGTTTT-GATA
1 AACTGGGGCAAAACCC-TTTTCGATA
* *
64017818 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGATA
*
64017843 AACTAGGGCAAAATCCCTTTT
1 AACTGGGGCAAAA-CCCTTTT
64017864 ACACTTCCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.10
25 29 0.73
26 7 0.17
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAACCCTTTTCGATA
Found at i:64021227 original size:9 final size:9
Alignment explanation
Indices: 64021215--64021278 Score: 55
Period size: 9 Copynumber: 7.6 Consensus size: 9
64021205 TGACATATAT
64021215 TTATGTAAG
1 TTATGTAAG
*
64021224 TTATAT-A-
1 TTATGTAAG
*
64021231 TT-TTTAAG
1 TTATGTAAG
64021239 TTATGTAAG
1 TTATGTAAG
* *
64021248 TTATAT-AT
1 TTATGTAAG
*
64021256 TTATCTAAG
1 TTATGTAAG
64021265 TTATGTAAG
1 TTATGTAAG
64021274 TTATG
1 TTATG
64021279 ATATGATATA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
6 2 0.05
7 3 0.07
8 9 0.21
9 29 0.67
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.52
Consensus pattern (9 bp):
TTATGTAAG
Found at i:64021238 original size:15 final size:17
Alignment explanation
Indices: 64021209--64021242 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
64021199 ATGATATGAC
64021209 ATATATTTATGTAAGTT
1 ATATATTTATGTAAGTT
64021226 ATATATTT-T-TAAGTT
1 ATATATTTATGTAAGTT
64021241 AT
1 AT
64021243 GTAAGTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
ATATATTTATGTAAGTT
Found at i:64021254 original size:26 final size:26
Alignment explanation
Indices: 64021215--64021282 Score: 113
Period size: 24 Copynumber: 2.7 Consensus size: 26
64021205 TGACATATAT
64021215 TTATGTAAGTTATATATTT-T-TAAG
1 TTATGTAAGTTATATATTTATCTAAG
64021239 TTATGTAAGTTATATATTTATCTAAG
1 TTATGTAAGTTATATATTTATCTAAG
64021265 TTATGTAAGTTATGATAT
1 TTATGTAAGTTAT-ATAT
64021283 GATATATATT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
24 19 0.46
25 1 0.02
26 17 0.41
27 4 0.10
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (26 bp):
TTATGTAAGTTATATATTTATCTAAG
Found at i:64022627 original size:33 final size:33
Alignment explanation
Indices: 64022587--64022655 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
64022577 ATATATAAGG
64022587 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
1 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
64022620 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
1 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
64022653 TTA
1 TTA
64022656 AGACTAGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (33 bp):
TTATTAGTTATCATTAGACGTATCGTTTTTCTA
Found at i:64024624 original size:15 final size:14
Alignment explanation
Indices: 64024600--64024641 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
64024590 TGAAATTTAT
*
64024600 TTTTAGGGTTTAAA
1 TTTTAAGGTTTAAA
64024614 GTTTTAAGGTTT-AA
1 -TTTTAAGGTTTAAA
64024628 TATTTAAGGTTTAA
1 T-TTTAAGGTTTAA
64024642 TGGATTAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 1 0.04
14 12 0.50
15 11 0.46
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (14 bp):
TTTTAAGGTTTAAA
Found at i:64024635 original size:14 final size:14
Alignment explanation
Indices: 64024616--64024642 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64024606 GGTTTAAAGT
64024616 TTTAAGGTTTAATA
1 TTTAAGGTTTAATA
64024630 TTTAAGGTTTAAT
1 TTTAAGGTTTAAT
64024643 GGATTAAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (14 bp):
TTTAAGGTTTAATA
Found at i:64024671 original size:22 final size:23
Alignment explanation
Indices: 64024646--64024700 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
64024636 GTTTAATGGA
*
64024646 TTAAGGGTTTAGTGTC-TATAGT
1 TTAAGGGTTTAGTGGCATATAGT
* *
64024668 TTAAGGTTTTA-TGGCATATGGT
1 TTAAGGGTTTAGTGGCATATAGT
64024690 TT-AGGGTTTAG
1 TTAAGGGTTTAG
64024701 GGTTTAGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.22, C:0.04, G:0.29, T:0.45
Consensus pattern (23 bp):
TTAAGGGTTTAGTGGCATATAGT
Found at i:64024697 original size:7 final size:7
Alignment explanation
Indices: 64024687--64024729 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
64024677 TATGGCATAT
64024687 GGTTTAG
1 GGTTTAG
64024694 GGTTTAG
1 GGTTTAG
64024701 GGTTTAG
1 GGTTTAG
* *
64024708 AG-TTAT
1 GGTTTAG
64024714 GGTTTAG
1 GGTTTAG
64024721 GGTTTAG
1 GGTTTAG
64024728 GG
1 GG
64024730 ATAAACAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 4 0.13
7 27 0.87
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:64025427 original size:31 final size:33
Alignment explanation
Indices: 64025370--64025433 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
64025360 TTTGGGTCAC
* *
64025370 AACCCATAACAGAATCAATTGGGCCT-AGCCCA
1 AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
64025402 AACCAATAACAGAA-CAAGTGGGCCTAAGCCCA
1 AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
64025434 TTACAGTGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 10 0.34
32 19 0.66
ACGTcount: A:0.41, C:0.30, G:0.17, T:0.12
Consensus pattern (33 bp):
AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
Found at i:64025668 original size:32 final size:32
Alignment explanation
Indices: 64025632--64025734 Score: 75
Period size: 32 Copynumber: 3.2 Consensus size: 32
64025622 ATGCAGCTCT
64025632 AAGCCTTCAGTAGCAGTATTATAATTGGCACA
1 AAGCCTTCAGTAGCAGTATTATAATTGGCACA
* * * **
64025664 AAGCCATT-GGTAACTGTATTATGTTTGGCACA
1 AAGCC-TTCAGTAGCAGTATTATAATTGGCACA
* * * * *
64025696 TAGCCATCAG-CGACAGTAATATAATAGGCACA
1 AAGCCTTCAGTAG-CAGTATTATAATTGGCACA
*
64025728 TAGCCTT
1 AAGCCTT
64025735 GGGTAAATAT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
31 1 0.02
32 49 0.94
33 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (32 bp):
AAGCCTTCAGTAGCAGTATTATAATTGGCACA
Found at i:64026244 original size:27 final size:27
Alignment explanation
Indices: 64026214--64026356 Score: 110
Period size: 27 Copynumber: 5.3 Consensus size: 27
64026204 CAAAACAGTC
* * *
64026214 ATTTTACCCTACAGGGGCATTTTGGTA
1 ATTTTACACTACAAGGGTATTTTGGTA
*
64026241 ATTTTACACTATAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTTGGTA
* * **
64026268 ATATTACACTACAAGGGTATTTAGAAA
1 ATTTTACACTACAAGGGTATTTTGGTA
* * **
64026295 AATTTACA-AATCGGGGGTATTTTGGTA
1 ATTTTACACTA-CAAGGGTATTTTGGTA
* * * *
64026322 ATTTTACAAT-CTGAGGGTATTTCGATA
1 ATTTTACACTAC-AAGGGTATTTTGGTA
64026349 ATTTTACA
1 ATTTTACA
64026357 AATCAGGAGT
Statistics
Matches: 91, Mismatches: 22, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
26 2 0.02
27 89 0.98
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTTGGTA
Found at i:64026339 original size:54 final size:54
Alignment explanation
Indices: 64026255--64026384 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 54
64026245 TACACTATAA
* * *
64026255 GGGTATTTTGGTAATATTACACTACAAGGGTATTTAGAAAAATTTACAAATCGG
1 GGGTATTTTGGTAATTTTACAATACAAGGGTATTTAGAAAAATTTACAAATCAG
* * * *
64026309 GGGTATTTTGGTAATTTTACAAT-CTGAGGGTATTTCGATAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAATAC-AAGGGTATTTAGAAAAATTTACAAATCAG
* ***
64026363 GAGTATTTCAATAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
64026385 ATCAGGAGCT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 63 0.98
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAATACAAGGGTATTTAGAAAAATTTACAAATCAG
Found at i:64026357 original size:27 final size:27
Alignment explanation
Indices: 64026281--64026387 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
64026271 TTACACTACA
* * *
64026281 AGGGTATTTAGAAAAATTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
64026308 GGGGTATTTTGGTAATTTTAC-AATCTG
1 AGGGTATTTCGATAATTTTACAAATC-G
64026335 AGGGTATTTCGATAATTTTACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
*
64026361 AGGAGTATTTCAATAATTTTACAAATC
1 AGG-GTATTTCGATAATTTTACAAATC
64026388 AGGAGCTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.10
27 57 0.84
28 4 0.06
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:64026369 original size:81 final size:81
Alignment explanation
Indices: 64026227--64026387 Score: 184
Period size: 81 Copynumber: 2.0 Consensus size: 81
64026217 TTACCCTACA
* * * *
64026227 GGGGCATTTTGGTAATTTTACACTATAAGGGTATTTTGGTAATATTACACTACAAGGGTATTT-A
1 GGGGCATTTTGGTAATTTTACAATATAAGGGTATTTCGATAATATTACAATACAAGGGTATTTCA
64026291 GAAAAATTTACAAATCG
66 -AAAAATTTACAAATCG
* * * *
64026308 GGGGTATTTTGGTAATTTTACAATCTGAGGGTATTTCGATAATTTTACAA-ATC-AGGAGTATTT
1 GGGGCATTTTGGTAATTTTACAATATAAGGGTATTTCGATAATATTACAATA-CAAGG-GTATTT
* *
64026371 CAATAATTTTACAAATC
64 CAAAAAATTTACAAATC
64026388 AGGAGCTTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
80 4 0.06
81 62 0.93
82 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (81 bp):
GGGGCATTTTGGTAATTTTACAATATAAGGGTATTTCGATAATATTACAATACAAGGGTATTTCA
AAAAATTTACAAATCG
Found at i:64029242 original size:41 final size:42
Alignment explanation
Indices: 64029180--64029378 Score: 201
Period size: 41 Copynumber: 4.8 Consensus size: 42
64029170 ATTCGTCGTG
* *
64029180 TTTGGA-TAAAAAATGCCACTATAGCTCAACCTTTT-GCTGCA
1 TTTGGACT-AAAAATGCCACTATTGCTCAACCTTTTAGCGGCA
* * * **
64029221 TTTGGACTAAAAACGCTACTATTGCTC-AGCTTTTAGCGGTG
1 TTTGGACTAAAAATGCCACTATTGCTCAACCTTTTAGCGGCA
* * ** *
64029262 TTTGAACAAAAAATGCCACTATTGCT-AAATTTTTAGTGGCA
1 TTTGGACTAAAAATGCCACTATTGCTCAACCTTTTAGCGGCA
**
64029303 TTTGGACTAAAAATGCCACTATTGCTCAA-CTTTTAGCGGTG
1 TTTGGACTAAAAATGCCACTATTGCTCAACCTTTTAGCGGCA
* * *
64029344 TTTGGTCTAAAAACGCCACTATTGCTCAACATTTT
1 TTTGGACTAAAAATGCCACTATTGCTCAACCTTTT
64029379 GCAACATTTT
Statistics
Matches: 128, Mismatches: 25, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
40 6 0.05
41 115 0.90
42 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (42 bp):
TTTGGACTAAAAATGCCACTATTGCTCAACCTTTTAGCGGCA
Found at i:64029314 original size:82 final size:82
Alignment explanation
Indices: 64029177--64029378 Score: 264
Period size: 82 Copynumber: 2.5 Consensus size: 82
64029167 CATATTCGTC
* * ** *
64029177 GTGTTTGGATAAAAAATGCCACTATAGCTCAACCTTTTGCTGCATTTGGACTAAAAACGCTACTA
1 GTGTTTGGACAAAAAATGCCACTATTGCTCAAATTTTTGCTGCATTTGGACTAAAAACGCCACTA
*
64029242 TTGCTCAGCTTTTAGCG
66 TTGCTCAACTTTTAGCG
* *
64029259 GTGTTTGAACAAAAAATGCCACTATTGCT-AAATTTTTAG-TGGCATTTGGACTAAAAATGCCAC
1 GTGTTTGGACAAAAAATGCCACTATTGCTCAAATTTTT-GCT-GCATTTGGACTAAAAACGCCAC
64029322 TATTGCTCAACTTTTAGCG
64 TATTGCTCAACTTTTAGCG
* * *
64029341 GTGTTTGGTCTAAAAACGCCACTATTGCTCAACATTTT
1 GTGTTTGGACAAAAAATGCCACTATTGCTCAA-ATTTT
64029379 GCAACATTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
81 7 0.07
82 90 0.87
83 2 0.02
84 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (82 bp):
GTGTTTGGACAAAAAATGCCACTATTGCTCAAATTTTTGCTGCATTTGGACTAAAAACGCCACTA
TTGCTCAACTTTTAGCG
Found at i:64037353 original size:44 final size:42
Alignment explanation
Indices: 64037276--64037375 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 42
64037266 CGATATGTGT
* * *
64037276 TTTCGTGTAAGACCACATCTCAGACGTTGGCATCGAT-TTATGA
1 TTTCATGTAAGACCACATCTCAGACATTAGCATC-ATATT-TGA
** *
64037319 TTTACATGTAAGACCATGTCTGAGACATTAGCATCATATTTGA
1 TTT-CATGTAAGACCACATCTCAGACATTAGCATCATATTTGA
*
64037362 TTTCGTGTAAGACC
1 TTTCATGTAAGACC
64037376 CTATTTGCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 10 0.21
43 11 0.23
44 27 0.56
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (42 bp):
TTTCATGTAAGACCACATCTCAGACATTAGCATCATATTTGA
Found at i:64037401 original size:43 final size:44
Alignment explanation
Indices: 64037281--64037413 Score: 132
Period size: 42 Copynumber: 3.1 Consensus size: 44
64037271 TGTGTTTTCG
* *
64037281 TGTAAGACCACATCTCAGAC-GTTGGCATCGAT-TTATGATTTACA
1 TGTAAGACCATATCTGAGACAG-TGGCATCGATATT-TGATTTACA
* * * *
64037325 TGTAAGACCATGTCTGAGACATTAGCATC-ATATTTGATTT-CG
1 TGTAAGACCATATCTGAGACAGTGGCATCGATATTTGATTTACA
* * *
64037367 TGTAAGACCCTATTTGCGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATATCTGAGACAGTGGCATCGATATTTGATTTACA
64037410 TGTA
1 TGTA
64037414 TGGCCACGTC
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
42 26 0.36
43 21 0.29
44 25 0.35
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (44 bp):
TGTAAGACCATATCTGAGACAGTGGCATCGATATTTGATTTACA
Found at i:64037436 original size:43 final size:43
Alignment explanation
Indices: 64037281--64037437 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
64037271 TGTGTTTTCG
* *
64037281 TGTAAGACCACATCTCAGACGTTGGCATCGAT-TTATGATTTACA
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATATT-TGA-TTACA
* * * * *
64037325 TGTAAGACCATGTCTGAGACATTAGCATC-ATATTTGATTTCG
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
* * *
64037367 TGTAAGACC-CTATTTGCGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGAGAC-GTTGGCATCGATATTTGATTACA
* * *
64037410 TGTATGGCCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGAGACGTTGGCAT
64037438 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 20, Indels: 13
0.73 0.17 0.11
Matches are distributed among these distances:
42 25 0.29
43 35 0.40
44 27 0.31
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
Found at i:64041591 original size:53 final size:53
Alignment explanation
Indices: 64041418--64041618 Score: 173
Period size: 53 Copynumber: 3.8 Consensus size: 53
64041408 ATTAGGGTTT
* * * * *
64041418 AAGGATACTAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACA-AAGG-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG--TT-CATAAGGC
* * * *
64041472 AAGGA-ATTCATGTAAGACCATGTCAAGACATGGCATTGAT-AG---ATAAGGC
1 AAGGATA-CCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
** * * *
64041521 AAATATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
64041574 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
64041619 TAAAAAGGAT
Statistics
Matches: 117, Mismatches: 22, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 31 0.26
50 2 0.02
53 48 0.41
54 31 0.26
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:64045577 original size:17 final size:17
Alignment explanation
Indices: 64045555--64045590 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
64045545 CGAAGACAAG
64045555 AAAACCAAACTTGTTGA
1 AAAACCAAACTTGTTGA
64045572 AAAACCAAACTTGTTGA
1 AAAACCAAACTTGTTGA
64045589 AA
1 AA
64045591 TCTAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (17 bp):
AAAACCAAACTTGTTGA
Found at i:64046243 original size:23 final size:23
Alignment explanation
Indices: 64046216--64046279 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 23
64046206 ATTAACTTAA
64046216 ATAATATTAATATTATTATATTG
1 ATAATATTAATATTATTATATTG
* * * *
64046239 ATAATAATT-TTTTTATTATTTTT
1 ATAAT-ATTAATATTATTATATTG
* *
64046262 AAAATATTAAAATTATTA
1 ATAATATTAATATTATTA
64046280 AAATATTAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
22 3 0.10
23 25 0.81
24 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
ATAATATTAATATTATTATATTG
Found at i:64046278 original size:9 final size:8
Alignment explanation
Indices: 64046260--64046292 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
64046250 TTTATTATTT
64046260 TTAAAATA
1 TTAAAATA
64046268 TTAAAATTA
1 TTAAAA-TA
64046277 TTAAAATA
1 TTAAAATA
64046285 TTAAAATA
1 TTAAAATA
64046293 AAATATTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TTAAAATA
Found at i:64049990 original size:20 final size:20
Alignment explanation
Indices: 64049965--64050012 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
64049955 TGTGGGACAT
64049965 GGGCGTGTCCCCATGCACAC
1 GGGCGTGTCCCCATGCACAC
64049985 GGGCGTGTCCCCATGCACAC
1 GGGCGTGTCCCCATGCACAC
64050005 GGGCGTGT
1 GGGCGTGT
64050013 GCATAGCCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.35, G:0.35, T:0.17
Consensus pattern (20 bp):
GGGCGTGTCCCCATGCACAC
Found at i:64058024 original size:40 final size:40
Alignment explanation
Indices: 64057980--64058168 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
64057970 GCTACTTGCT
*
64057980 CAAATGCCTTCGGGACTGAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
64058020 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64058060 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
64058100 CAAATGCCTTAGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
64058140 CAAATGCCTTCGGGACTTAGCCCGATTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
64058169 CATCCGAATA
Statistics
Matches: 139, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:64066921 original size:15 final size:13
Alignment explanation
Indices: 64066888--64066920 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
64066878 CGTACAGGGG
64066888 ACACACAGCTGGA
1 ACACACAGCTGGA
64066901 ACACACAGCTGGA
1 ACACACAGCTGGA
64066914 ACACACA
1 ACACACA
64066921 CCCATAGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.42, C:0.33, G:0.18, T:0.06
Consensus pattern (13 bp):
ACACACAGCTGGA
Found at i:64067905 original size:46 final size:46
Alignment explanation
Indices: 64067781--64067910 Score: 136
Period size: 48 Copynumber: 2.8 Consensus size: 46
64067771 ACCTCTCGTA
* * * * *
64067781 GCCGATGTATGTCCCAGACATGTTTTACACTAGCACTCGTTTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAAT
* * * **
64067827 GCCAATGCTATATCCCAAACATGGTCTTACACTAGCTCTCATAAT-GTT
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-ATCAAT
64067875 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
64067911 ACACAAGTGA
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
46 21 0.31
47 22 0.32
48 24 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAAT
Found at i:64069250 original size:17 final size:18
Alignment explanation
Indices: 64069218--64069252 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
64069208 AGTTGTAAAA
64069218 AAAGGGTAGAAAAATGTG
1 AAAGGGTAGAAAAATGTG
*
64069236 AAAGGG-AGGAAAATGTG
1 AAAGGGTAGAAAAATGTG
64069253 GGCTGTTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.49, C:0.00, G:0.37, T:0.14
Consensus pattern (18 bp):
AAAGGGTAGAAAAATGTG
Found at i:64081982 original size:42 final size:43
Alignment explanation
Indices: 64081935--64082044 Score: 111
Period size: 42 Copynumber: 2.6 Consensus size: 43
64081925 GGATTTTCAG
* * *
64081935 TATGTGCTCTCATGTAATACCACGTCTAGG-ACATTGGC-TCGA
1 TATGTGATCTCATGTAAGACCACGTCT-GGTACAGTGGCATCGA
* * *
64081977 TATGTGTTCTTATGTAAGACC-CTGTCTGGTACAGTGGCATTGA
1 TATGTGATCTCATGTAAGACCAC-GTCTGGTACAGTGGCATCGA
64082020 TATGTGAT-TACATGTAAGACCACGT
1 TATGTGATCT-CATGTAAGACCACGT
64082045 TTGAGACGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.05
42 30 0.54
43 22 0.39
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (43 bp):
TATGTGATCTCATGTAAGACCACGTCTGGTACAGTGGCATCGA
Found at i:64086317 original size:69 final size:68
Alignment explanation
Indices: 64086238--64086375 Score: 231
Period size: 69 Copynumber: 2.0 Consensus size: 68
64086228 AACTTTCATG
** * *
64086238 TCAACTATATATATAACAAAATATTCAATAAAAGATCATTGGAATGCAATCTCATTGCCTAATTT
1 TCAACTATATATATAACAAAATATTCAATAAAAGATCATCAGAATACAATCTCATTACCTAATTT
64086303 AGA
66 AGA
64086306 TCAAGCTATATATATAACAAAATATTCAATAAAAGATCATCAGAATACAATCTCATTACCTAATT
1 TCAA-CTATATATATAACAAAATATTCAATAAAAGATCATCAGAATACAATCTCATTACCTAATT
64086371 TAGA
65 TAGA
64086375 T
1 T
64086376 TATACGAAAC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 4 0.06
69 61 0.94
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (68 bp):
TCAACTATATATATAACAAAATATTCAATAAAAGATCATCAGAATACAATCTCATTACCTAATTT
AGA
Found at i:64095013 original size:30 final size:30
Alignment explanation
Indices: 64094979--64095041 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
64094969 ACTTATTTTA
64094979 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
64095009 TTGTTAATTTTGTTTTTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
64095039 TTG
1 TTG
64095042 CTTGTCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:64095113 original size:12 final size:12
Alignment explanation
Indices: 64095092--64095125 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64095082 TATATATTTT
*
64095092 AAAATTATATAA
1 AAAATAATATAA
64095104 AAAATAATATAA
1 AAAATAATATAA
*
64095116 AAATTAATAT
1 AAAATAATAT
64095126 GGGCGGGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:64095724 original size:30 final size:30
Alignment explanation
Indices: 64095690--64095752 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
64095680 ACTTATTTTA
64095690 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
64095720 TTGTTAATTTTGTTTTTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
64095750 TTG
1 TTG
64095753 CTTGTCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:64095824 original size:12 final size:12
Alignment explanation
Indices: 64095803--64095836 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64095793 TATATATTTT
*
64095803 AAAATTATATAA
1 AAAATAATATAA
64095815 AAAATAATATAA
1 AAAATAATATAA
*
64095827 AAATTAATAT
1 AAAATAATAT
64095837 GGGCGGGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:64096014 original size:711 final size:711
Alignment explanation
Indices: 64094652--64096076 Score: 2841
Period size: 711 Copynumber: 2.0 Consensus size: 711
64094642 GGGTCGGGTC
64094652 ACTTGGCCCGGCCCGAAATATGGGAGGGTTTAGGCAAAAATATAGAGTGTCTCGACCCAAAATGT
1 ACTTGGCCCGGCCCGAAATATGGGAGGGTTTAGGCAAAAATATAGAGTGTCTCGACCCAAAATGT
*
64094717 GGGAGGGTTTGGGCAAAAATATAGGCTCGAAAAATTGGATTGGACAAAAAAATAAGGCCCGTTTA
66 GGGAGGGTTTGGGCAAAAATATAGGCTCGAAAAATAGGATTGGACAAAAAAATAAGGCCCGTTTA
64094782 AAAACTGGCCGGACCCAGGATAAGGCATTTTTGGCCTAAGCCTGGCCCGACCCAACTCTAATTCA
131 AAAACTGGCCGGACCCAGGATAAGGCATTTTTGGCCTAAGCCTGGCCCGACCCAACTCTAATTCA
64094847 CTAAAGGACAAAAAAACTCTACTGTTTTTAATATTATTTTCTTGTTGTTTTCTCCCTATTTTGCT
196 CTAAAGGACAAAAAAACTCTACTGTTTTTAATATTATTTTCTTGTTGTTTTCTCCCTATTTTGCT
64094912 ATCATTTTACTATTATGTTGCTACTATTTTGTTGTTATTGTTTGGATATTGTATAAAACTTATTT
261 ATCATTTTACTATTATGTTGCTACTATTTTGTTGTTATTGTTTGGATATTGTATAAAACTTATTT
64094977 TATTGTTAATTTTGTTATTATTTTAAAGACATTTGTTAATTTTGTTTTTATTTTAGAGACATTTG
326 TATTGTTAATTTTGTTATTATTTTAAAGACATTTGTTAATTTTGTTTTTATTTTAGAGACATTTG
64095042 CTTGTCAAATTGCATCTATCTTAGTATTTTTTATGTATTATATATATTTTAAAATTATATAAAAA
391 CTTGTCAAATTGCATCTATCTTAGTATTTTTTATGTATTATATATATTTTAAAATTATATAAAAA
64095107 ATAATATAAAAATTAATATGGGCGGGTTAAGTTGGGCTCGGGTTTTAGTATTTTTATCCTGGTCG
456 ATAATATAAAAATTAATATGGGCGGGTTAAGTTGGGCTCGGGTTTTAGTATTTTTATCCTGGTCG
64095172 AGCTTGGGCAAAATTTTAAGTTTTGGGCCGAGCTGAGCCCGAGCCTAGCAAACAGACCTGAATTT
521 AGCTTGGGCAAAATTTTAAGTTTTGGGCCGAGCTGAGCCCGAGCCTAGCAAACAGACCTGAATTT
64095237 TTAGTTGAGCCTAGCTTGAATCCGGCCAGGCCCGACCCATGCACACCTCTACCCATGTCTCAGGC
586 TTAGTTGAGCCTAGCTTGAATCCGGCCAGGCCCGACCCATGCACACCTCTACCCATGTCTCAGGC
64095302 CGTGAGGACATTTGAAGTAGGGGCACATAGCTGTGTCTCAGCTCATGTTTCTTCCCGTGTA
651 CGTGAGGACATTTGAAGTAGGGGCACATAGCTGTGTCTCAGCTCATGTTTCTTCCCGTGTA
64095363 ACTTGGCCCGGCCCGAAATATGGGAGGGTTTAGGCAAAAATATAGAGTGTCTCGACCCAAAATGT
1 ACTTGGCCCGGCCCGAAATATGGGAGGGTTTAGGCAAAAATATAGAGTGTCTCGACCCAAAATGT
64095428 GGGAGGGTTTGGGCAAAAATATAGGCTCGAAAAATAGGATTGGACAAAAAAATAAGGCCCGTTTA
66 GGGAGGGTTTGGGCAAAAATATAGGCTCGAAAAATAGGATTGGACAAAAAAATAAGGCCCGTTTA
64095493 AAAACTGGCCGGACCCAGGATAAGGCATTTTTGGCCTAAGCCTGGCCCGACCCAACTCTAATTCA
131 AAAACTGGCCGGACCCAGGATAAGGCATTTTTGGCCTAAGCCTGGCCCGACCCAACTCTAATTCA
64095558 CTAAAGGACAAAAAAACTCTACTGTTTTTAATATTATTTTCTTGTTGTTTTCTCCCTATTTTGCT
196 CTAAAGGACAAAAAAACTCTACTGTTTTTAATATTATTTTCTTGTTGTTTTCTCCCTATTTTGCT
64095623 ATCATTTTACTATTATGTTGCTACTATTTTGTTGTTATTGTTTGGATATTGTATAAAACTTATTT
261 ATCATTTTACTATTATGTTGCTACTATTTTGTTGTTATTGTTTGGATATTGTATAAAACTTATTT
64095688 TATTGTTAATTTTGTTATTATTTTAAAGACATTTGTTAATTTTGTTTTTATTTTAGAGACATTTG
326 TATTGTTAATTTTGTTATTATTTTAAAGACATTTGTTAATTTTGTTTTTATTTTAGAGACATTTG
64095753 CTTGTCAAATTGCATCTATCTTAGTATTTTTTATGTATTATATATATTTTAAAATTATATAAAAA
391 CTTGTCAAATTGCATCTATCTTAGTATTTTTTATGTATTATATATATTTTAAAATTATATAAAAA
64095818 ATAATATAAAAATTAATATGGGCGGGTTAAGTTGGGCTCGGGTTTTAGTATTTTTATCCTGGTCG
456 ATAATATAAAAATTAATATGGGCGGGTTAAGTTGGGCTCGGGTTTTAGTATTTTTATCCTGGTCG
64095883 AGCTTGGGCAAAATTTTAAGTTTTGGGCCGAGCTGAGCCCGAGCCTAGCAAACAGACCTGAATTT
521 AGCTTGGGCAAAATTTTAAGTTTTGGGCCGAGCTGAGCCCGAGCCTAGCAAACAGACCTGAATTT
64095948 TTAGTTGAGCCTAGCTTGAATCCGGCCAGGCCCGACCCATGCACACCTCTACCCATGTCTCAGGC
586 TTAGTTGAGCCTAGCTTGAATCCGGCCAGGCCCGACCCATGCACACCTCTACCCATGTCTCAGGC
64096013 CGTGAGGACATTTGAAGTAGGGGCACATAGCTGTGTCTCAGCTCATGTTTCTTCCCGTGTA
651 CGTGAGGACATTTGAAGTAGGGGCACATAGCTGTGTCTCAGCTCATGTTTCTTCCCGTGTA
64096074 ACT
1 ACT
64096077 CTCTAACTTG
Statistics
Matches: 713, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
711 713 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (711 bp):
ACTTGGCCCGGCCCGAAATATGGGAGGGTTTAGGCAAAAATATAGAGTGTCTCGACCCAAAATGT
GGGAGGGTTTGGGCAAAAATATAGGCTCGAAAAATAGGATTGGACAAAAAAATAAGGCCCGTTTA
AAAACTGGCCGGACCCAGGATAAGGCATTTTTGGCCTAAGCCTGGCCCGACCCAACTCTAATTCA
CTAAAGGACAAAAAAACTCTACTGTTTTTAATATTATTTTCTTGTTGTTTTCTCCCTATTTTGCT
ATCATTTTACTATTATGTTGCTACTATTTTGTTGTTATTGTTTGGATATTGTATAAAACTTATTT
TATTGTTAATTTTGTTATTATTTTAAAGACATTTGTTAATTTTGTTTTTATTTTAGAGACATTTG
CTTGTCAAATTGCATCTATCTTAGTATTTTTTATGTATTATATATATTTTAAAATTATATAAAAA
ATAATATAAAAATTAATATGGGCGGGTTAAGTTGGGCTCGGGTTTTAGTATTTTTATCCTGGTCG
AGCTTGGGCAAAATTTTAAGTTTTGGGCCGAGCTGAGCCCGAGCCTAGCAAACAGACCTGAATTT
TTAGTTGAGCCTAGCTTGAATCCGGCCAGGCCCGACCCATGCACACCTCTACCCATGTCTCAGGC
CGTGAGGACATTTGAAGTAGGGGCACATAGCTGTGTCTCAGCTCATGTTTCTTCCCGTGTA
Found at i:64101369 original size:21 final size:21
Alignment explanation
Indices: 64101319--64101370 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
64101309 TGTAGGGTTC
* *
64101319 ACACACTCGTGTGGTCAAGGG
1 ACACACCCGTGTGATCAAGGG
**
64101340 ACATGCCCGTGTGATCATA-GG
1 ACACACCCGTGTGATCA-AGGG
64101361 ACACACCCGT
1 ACACACCCGT
64101371 ATTACAGGCC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (21 bp):
ACACACCCGTGTGATCAAGGG
Found at i:64102374 original size:12 final size:13
Alignment explanation
Indices: 64102357--64102394 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
64102347 ATCCTGGAAT
64102357 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
64102369 ATTAAGAACACATA
1 ATTAAGAACA-AGA
64102383 ATTAAGAACAAG
1 ATTAAGAACAAG
64102395 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:64105910 original size:93 final size:93
Alignment explanation
Indices: 64105798--64105969 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
64105788 CGCCCATAAG
*
64105798 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAACCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAACCATAAGTGAACTCGGACTCAACTC
64105862 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
64105891 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAACCATAAGTGAACTCGGACTCAACTCA
64105956 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
64105970 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAACCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:64105964 original size:46 final size:46
Alignment explanation
Indices: 64105791--64105966 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
64105781 TGTAACCCGC
* * *
64105791 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
64105837 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
64105887 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
64105930 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
64105967 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64124542 original size:21 final size:23
Alignment explanation
Indices: 64124509--64124551 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
64124499 TCCAGGTCAC
*
64124509 AATTACTACAATCGAGG-TGTAT
1 AATTACTACAATCAAGGATGTAT
*
64124531 AATT-CTATAATCAAGGATGTA
1 AATTACTACAATCAAGGATGTA
64124552 CATACTCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.33
Consensus pattern (23 bp):
AATTACTACAATCAAGGATGTAT
Found at i:64129044 original size:64 final size:63
Alignment explanation
Indices: 64128965--64129136 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 63
64128955 AGACATTATG
* *
64128965 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGGCAAGAGAGCTAC-AGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTACACCATGTAGACAAGAGAGCTACGA-GATAT
* * * *
64129029 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAAGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTG---TACACCATGTAGACAAGAGAGCTACGAGAT
64129094 AT
62 AT
* * *
64129096 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTGTACACCATGT
64129137 GTAGAAGAGA
Statistics
Matches: 89, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
63 8 0.09
64 27 0.30
66 22 0.25
67 31 0.35
68 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAT
Found at i:64132872 original size:12 final size:12
Alignment explanation
Indices: 64132855--64132879 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64132845 ACAACATATA
64132855 TTCAGAAAAATC
1 TTCAGAAAAATC
64132867 TTCAGAAAAATC
1 TTCAGAAAAATC
64132879 T
1 T
64132880 GGTATCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (12 bp):
TTCAGAAAAATC
Found at i:64135945 original size:20 final size:20
Alignment explanation
Indices: 64135916--64135960 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
64135906 AGCACATGTA
*
64135916 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
* *
64135936 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTTAGAACTT
64135956 TTCAT
1 TTCAT
64135961 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:64139161 original size:24 final size:24
Alignment explanation
Indices: 64139134--64139179 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
64139124 TTGTTTTGGC
64139134 TTTT-CTTCTCCCAATTAAACTCAG
1 TTTTACTT-TCCCAATTAAACTCAG
*
64139158 TTTTACTTTCCCACTTAAACTC
1 TTTTACTTTCCCAATTAAACTC
64139180 TGATTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.43
Consensus pattern (24 bp):
TTTTACTTTCCCAATTAAACTCAG
Found at i:64143615 original size:14 final size:14
Alignment explanation
Indices: 64143596--64143622 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64143586 TTCATGAAAT
64143596 ATATACTATCAAAG
1 ATATACTATCAAAG
64143610 ATATACTATCAAA
1 ATATACTATCAAA
64143623 CAAGTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.30
Consensus pattern (14 bp):
ATATACTATCAAAG
Found at i:64148546 original size:47 final size:45
Alignment explanation
Indices: 64148448--64148611 Score: 170
Period size: 46 Copynumber: 3.5 Consensus size: 45
64148438 GTTCTGATGC
* * *
64148448 CATGTCCCAGACATGGTCTTACATTGGCTCAT-ATCTCAAGTCGAAG
1 CATGTCCCAGACAT-GTCTTACACTGGCT-ATCGTCTCAAGCCGAAG
* * *
64148494 CCATGTCCCAGACATGGTCTTACACTGACTATCGTTTCATAGCCGACG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTATCGTCTCA-AGCCGAAG
* * *
64148542 CATGTTCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTAT-CGTCTC-AAGCCGAAG
64148588 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
64148612 AGCACTCATC
Statistics
Matches: 101, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 49 0.49
47 45 0.45
48 6 0.06
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCGTCTCAAGCCGAAG
Found at i:64148634 original size:46 final size:46
Alignment explanation
Indices: 64148443--64148662 Score: 159
Period size: 47 Copynumber: 4.7 Consensus size: 46
64148433 GTAAGGTTCT
* *
64148443 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTCAAGT--C
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCAC-TATCTCAA-TACC
*
64148490 GAAGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCGTTTC-ATAGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCACTATC---TCAATA-CC
* * * * **
64148538 GACGCATGTTCCAGACAT-GTCTTACACTGGCTTAC-GTCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGC--ACTATCTCAATACC
* *
64148584 GATGCATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCAATACT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCACT-ATCTCAATACC
* *
64148630 GATGCTGTGTCCCAGACATGGTCTCACACTGGC
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGC
64148663 TTACACAAGT
Statistics
Matches: 139, Mismatches: 19, Indels: 29
0.74 0.10 0.16
Matches are distributed among these distances:
44 6 0.04
45 2 0.01
46 55 0.40
47 57 0.41
48 15 0.11
49 2 0.01
50 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCACTATCTCAATACC
Found at i:64158014 original size:22 final size:20
Alignment explanation
Indices: 64157972--64158011 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
64157962 AAGAAAAGAA
*
64157972 AAAATGAGAATAAATATTTG
1 AAAATGAGAATAAAGATTTG
*
64157992 AAAATGTGAATAATAGATTT
1 AAAATGAGAATAA-AGATTT
64158012 TGATATGGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.33
Consensus pattern (20 bp):
AAAATGAGAATAAAGATTTG
Found at i:64162308 original size:20 final size:21
Alignment explanation
Indices: 64162277--64162330 Score: 76
Period size: 20 Copynumber: 2.6 Consensus size: 21
64162267 CCACTTCGCC
*
64162277 AATCAGTACAACAGAGTATGA
1 AATCAGTACAACAGAATATGA
64162298 AATCA-TACAACAGAATATGA
1 AATCAGTACAACAGAATATGA
64162318 AATC-GTACTAACA
1 AATCAGTAC-AACA
64162331 CATTGTATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 21 0.70
21 9 0.30
ACGTcount: A:0.50, C:0.17, G:0.13, T:0.20
Consensus pattern (21 bp):
AATCAGTACAACAGAATATGA
Found at i:64165231 original size:30 final size:30
Alignment explanation
Indices: 64165197--64165259 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
64165187 GTATCAGGGG
* * *
64165197 ACACACGGTTGTGTTACTTGACCGTGTGTC
1 ACACACGGCTGTGTTACCTGACCGTATGTC
* *
64165227 ACACATGGCTGTGTTACCTGGCCGTATGTC
1 ACACACGGCTGTGTTACCTGACCGTATGTC
64165257 ACA
1 ACA
64165260 TCCGATTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.30
Consensus pattern (30 bp):
ACACACGGCTGTGTTACCTGACCGTATGTC
Found at i:64171168 original size:23 final size:23
Alignment explanation
Indices: 64171140--64171195 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
64171130 CCATATGTTT
64171140 GGTATGAATTGGTAAGGTTTATG
1 GGTATGAATTGGTAAGGTTTATG
64171163 GGTATGAATTGGTAAGGTTTATG
1 GGTATGAATTGGTAAGGTTTATG
64171186 GGTATGAATT
1 GGTATGAATT
64171196 TTGGTGACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (23 bp):
GGTATGAATTGGTAAGGTTTATG
Found at i:64177503 original size:8 final size:8
Alignment explanation
Indices: 64177481--64177514 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
64177471 GTACAAGCAA
64177481 ATTTTGTG
1 ATTTTGTG
64177489 TATTTTGTG
1 -ATTTTGTG
64177498 ATTTTGTG
1 ATTTTGTG
64177506 ATTTTGTG
1 ATTTTGTG
64177514 A
1 A
64177515 ATTAGGGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:64178915 original size:30 final size:29
Alignment explanation
Indices: 64178871--64178928 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
64178861 CCCTATTTTT
* *
64178871 GGCATGGCCTAGCACACGGCCTGGACACG
1 GGCATGGCATAGCACACGGCCTAGACACG
*
64178900 GGCATGTGCATAGCACACGGGCTAGACAC
1 GGCATG-GCATAGCACACGGCCTAGACAC
64178929 ATGGGCGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.24, C:0.31, G:0.33, T:0.12
Consensus pattern (29 bp):
GGCATGGCATAGCACACGGCCTAGACACG
Found at i:64179394 original size:30 final size:30
Alignment explanation
Indices: 64179360--64179431 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
64179350 CATGTTCTAA
*
64179360 GGCCGTGCCTCTCACACGATCGAGACACAC
1 GGCCGTGTCTCTCACACGATCGAGACACAC
*
64179390 GGCCGTGTCTCTCACACGATCGAGGCACAC
1 GGCCGTGTCTCTCACACGATCGAGACACAC
64179420 GGCCGTGTCTCT
1 GGCCGTGTCTCT
64179432 ACCCGTGTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.18, C:0.38, G:0.26, T:0.18
Consensus pattern (30 bp):
GGCCGTGTCTCTCACACGATCGAGACACAC
Found at i:64180439 original size:48 final size:50
Alignment explanation
Indices: 64180366--64180504 Score: 160
Period size: 50 Copynumber: 2.8 Consensus size: 50
64180356 CTTAGTAAGG
* * * *
64180366 TGCCAATGCCATATCACAGATATGGTTTTACTTGGGAT-TAC-AACT-T-GA
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCT-CTAA-TGTCGA
* *
64180414 TGCCAATGCCATCTCCCAGACATGGTCTTACATGGGATCTCTTATGTCGA
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTCTAATGTCGA
* *
64180464 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTC
64180505 ATATCAACGC
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
48 35 0.44
49 3 0.04
50 41 0.52
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTCTAATGTCGA
Found at i:64183488 original size:28 final size:27
Alignment explanation
Indices: 64183405--64183491 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
64183395 AGCATGACTG
* **
64183405 CCAG-AACAGATATTGTGACAGAGTTA
1 CCAGAAACAGATATTGTGGCAGAGCCA
*
64183431 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
64183458 CCAGAAACAGATATTTGTGGGAGAGCGA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
64183486 CCAGAA
1 CCAGAA
64183492 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
26 4 0.08
27 30 0.58
28 18 0.35
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.18
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:64192991 original size:30 final size:30
Alignment explanation
Indices: 64192956--64193016 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
64192946 TCCTTAACTC
64192956 AAAC-TTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
64192986 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
64193016 A
1 A
64193017 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:64193795 original size:38 final size:38
Alignment explanation
Indices: 64193753--64193829 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
64193743 ACTTAATCGG
64193753 AATAAATTTTTTGATTTCGAATTCGTGGTTTTAAAACT
1 AATAAATTTTTTGATTTCGAATTCGTGGTTTTAAAACT
*
64193791 AATAAATTTTTTGATTTTGAATTCGTGGTTTTAAAACT
1 AATAAATTTTTTGATTTCGAATTCGTGGTTTTAAAACT
64193829 A
1 A
64193830 TCGTTCTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (38 bp):
AATAAATTTTTTGATTTCGAATTCGTGGTTTTAAAACT
Found at i:64203264 original size:24 final size:25
Alignment explanation
Indices: 64203230--64203307 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 25
64203220 TACGACATTG
*
64203230 TGCTAAATGAAATAAGACCATGGCA
1 TGCTAAGTGAAATAAGACCATGGCA
*
64203255 T-CTAAGTGAAATAAGTCCATGGCAA
1 TGCTAAGTGAAATAAGACCATGGC-A
64203280 TGTGCTAAGTGAAATAA-ATCCATGGCA
1 --TGCTAAGTGAAATAAGA-CCATGGCA
64203307 T
1 T
64203308 TATGCTAAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
24 20 0.44
25 3 0.07
27 2 0.04
28 20 0.44
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24
Consensus pattern (25 bp):
TGCTAAGTGAAATAAGACCATGGCA
Found at i:64203288 original size:28 final size:28
Alignment explanation
Indices: 64203228--64203319 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
64203218 GATACGACAT
* *
64203228 TGTGCTAAATGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
64203255 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
* *
64203280 TGTGCTAAGTGAAATAAATCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
64203308 TATGCTAAGTGA
1 TGTGCTAAGTGA
64203320 GAAATTTCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
24 20 0.36
25 2 0.04
27 1 0.02
28 33 0.59
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:64205495 original size:29 final size:29
Alignment explanation
Indices: 64205453--64205512 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
64205443 ACCTATTAGG
64205453 ATAAAAAATTTGATTACTTTAGGACTTTA
1 ATAAAAAATTTGATTACTTTAGGACTTTA
64205482 ATAAAAAATTTGATTACTTTAGGACTTTA
1 ATAAAAAATTTGATTACTTTAGGACTTTA
64205511 AT
1 AT
64205513 GTCCATTGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.42
Consensus pattern (29 bp):
ATAAAAAATTTGATTACTTTAGGACTTTA
Found at i:64206848 original size:5 final size:5
Alignment explanation
Indices: 64206838--64206872 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
64206828 TATCTCCTTT
*
64206838 TTTTC TTTTC TTTTC TTTTC TTTTTT TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTT
64206873 TTCTATTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (5 bp):
TTTTC
Found at i:64206862 original size:11 final size:11
Alignment explanation
Indices: 64206837--64206873 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
64206827 GTATCTCCTT
64206837 TTTTTCTTTTC
1 TTTTTCTTTTC
64206848 -TTTTCTTTTC
1 TTTTTCTTTTC
*
64206858 TTTTTTTTTTC
1 TTTTTCTTTTC
64206869 TTTTT
1 TTTTT
64206874 TCTATTGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:64207735 original size:17 final size:17
Alignment explanation
Indices: 64207713--64207751 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
64207703 TTATCGTCAG
64207713 AAAAAAAAATTA-AAAA
1 AAAAAAAAATTACAAAA
*
64207729 TAAAAAAGAATTACAAAA
1 -AAAAAAAAATTACAAAA
64207747 AAAAA
1 AAAAA
64207752 TTAGAAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (17 bp):
AAAAAAAAATTACAAAA
Found at i:64207772 original size:8 final size:8
Alignment explanation
Indices: 64207748--64207820 Score: 58
Period size: 8 Copynumber: 8.4 Consensus size: 8
64207738 ATTACAAAAA
*
64207748 AAAATTAG
1 AAAATTAT
64207756 AAAACTTAT
1 AAAA-TTAT
64207765 AAAATTATTTT
1 AAAATTA---T
64207776 AAAATTAT
1 AAAATTAT
64207784 AAAATTATT
1 AAAATTA-T
64207793 AAAATTATTT
1 AAAATTA--T
*
64207803 AAAAATAT
1 AAAATTAT
64207811 AAAA-TAT
1 AAAATTAT
64207818 AAA
1 AAA
64207821 TTTTTAATAA
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
7 6 0.11
8 20 0.35
9 15 0.26
10 8 0.14
11 8 0.14
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (8 bp):
AAAATTAT
Found at i:64207778 original size:11 final size:9
Alignment explanation
Indices: 64207764--64207881 Score: 57
Period size: 10 Copynumber: 12.8 Consensus size: 9
64207754 AGAAAACTTA
64207764 TAAAATTATTT
1 TAAAATTA--T
64207775 TAAAATTA-
1 TAAAATTAT
64207783 TAAAATTAT
1 TAAAATTAT
64207792 TAAAATTATT
1 TAAAATTA-T
*
64207802 TAAAAATA-
1 TAAAATTAT
64207810 TAAAA-TA-
1 TAAAATTAT
* *
64207817 TAAATTTTTAA
1 TAAA--ATTAT
*
64207828 TAAAATTTAC
1 TAAAA-TTAT
*
64207838 TAAAATATTT
1 TAAAAT-TAT
*
64207848 TAAAAATAT
1 TAAAATTAT
64207857 TAGAAATT-T
1 TA-AAATTAT
* *
64207866 TAATATTTT
1 TAAAATTAT
64207875 TAAAATT
1 TAAAATT
64207882 TTATAAATCA
Statistics
Matches: 86, Mismatches: 11, Indels: 22
0.72 0.09 0.18
Matches are distributed among these distances:
7 6 0.07
8 17 0.20
9 23 0.27
10 28 0.33
11 12 0.14
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (9 bp):
TAAAATTAT
Found at i:64207803 original size:27 final size:27
Alignment explanation
Indices: 64207748--64207820 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
64207738 ATTACAAAAA
*
64207748 AAAATTAGAAAACTTATAAAATTATTTT
1 AAAATTATAAAA-TTATAAAATTATTTT
64207776 AAAATTATAAAATTATTAAAATTA-TTT
1 AAAATTATAAAATTA-TAAAATTATTTT
*
64207803 AAAAATATAAAA-TATAAA
1 AAAATTATAAAATTATAAA
64207821 TTTTTAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
25 4 0.10
26 2 0.05
27 17 0.40
28 19 0.45
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (27 bp):
AAAATTATAAAATTATAAAATTATTTT
Found at i:64207806 original size:19 final size:17
Alignment explanation
Indices: 64207756--64207800 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
64207746 AAAAAATTAG
64207756 AAAACTTATAAAATTATTTT
1 AAAA-TTATAAAATTA--TT
64207776 AAAATTATAAAATTATT
1 AAAATTATAAAATTATT
64207793 AAAATTAT
1 AAAATTAT
64207801 TTAAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.40
19 11 0.44
20 4 0.16
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATTATAAAATTATT
Found at i:64208121 original size:28 final size:28
Alignment explanation
Indices: 64208080--64208138 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
64208070 AGTAAATATG
64208080 ATTTATAAATTTTTTAAATAATATTAAA
1 ATTTATAAATTTTTTAAATAATATTAAA
* * **
64208108 ATTTCTAATTTTTTTAAATTTTATTAAA
1 ATTTATAAATTTTTTAAATAATATTAAA
64208136 ATT
1 ATT
64208139 GTTATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (28 bp):
ATTTATAAATTTTTTAAATAATATTAAA
Found at i:64208205 original size:11 final size:10
Alignment explanation
Indices: 64208180--64208238 Score: 50
Period size: 11 Copynumber: 5.8 Consensus size: 10
64208170 TATTTTTTTA
*
64208180 TTTTTAAA-A
1 TTTTTAAATT
64208189 TTTTTAGAATT
1 TTTTTA-AATT
*
64208200 TTTTTAAATAC
1 TTTTTAAAT-T
*
64208211 TTTTTATA-T
1 TTTTTAAATT
64208220 TTTTTATAATT
1 TTTTTA-AATT
64208231 TTTTTAAA
1 TTTTTAAA
64208239 GAATTTTAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
9 12 0.30
10 8 0.20
11 20 0.50
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:64208224 original size:31 final size:31
Alignment explanation
Indices: 64208180--64208238 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
64208170 TATTTTTTTA
64208180 TTTTTAAAATTTTTAGAATTTTTTTAAATAC
1 TTTTTAAAATTTTTAGAATTTTTTTAAATAC
* * *
64208211 TTTTTATATTTTTTATAATTTTTTTAAA
1 TTTTTAAAATTTTTAGAATTTTTTTAAA
64208239 GAATTTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (31 bp):
TTTTTAAAATTTTTAGAATTTTTTTAAATAC
Found at i:64210700 original size:43 final size:41
Alignment explanation
Indices: 64210645--64210777 Score: 135
Period size: 43 Copynumber: 3.1 Consensus size: 41
64210635 ATATCGTACA
**
64210645 ATGCCAAC-GTCCCAGACGTAGTCTTACGTGCAATCACATATCG
1 ATGCC-ACTGTCCCAGACG-AGTCTTACACG-AATCACATATCG
* *
64210688 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCAAATAT-G
1 ATGCCACTGTCCCAGAC-GAGTCTTACACGAATCACATATCG
* * *
64210729 ATGCCAATGTACCAGACAAGGTCTTACACGTAATCACATATCG
1 ATGCCACTGTCCCAGACGA-GTCTTACACG-AATCACATATCG
64210772 ATGCCA
1 ATGCCA
64210778 ACATCCTAGA
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
41 26 0.34
42 20 0.26
43 29 0.38
44 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (41 bp):
ATGCCACTGTCCCAGACGAGTCTTACACGAATCACATATCG
Found at i:64210744 original size:41 final size:43
Alignment explanation
Indices: 64210676--64210778 Score: 156
Period size: 41 Copynumber: 2.4 Consensus size: 43
64210666 TCTTACGTGC
* * *
64210676 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACG-
1 AATCACATATCGATGCCAATGTACCAGACAAGGTCTTACACGT
*
64210718 AATCAAATAT-GATGCCAATGTACCAGACAAGGTCTTACACGT
1 AATCACATATCGATGCCAATGTACCAGACAAGGTCTTACACGT
64210760 AATCACATATCGATGCCAA
1 AATCACATATCGATGCCAA
64210779 CATCCTAGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
41 28 0.52
42 18 0.33
43 8 0.15
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTACCAGACAAGGTCTTACACGT
Found at i:64220929 original size:12 final size:12
Alignment explanation
Indices: 64220899--64220932 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64220889 ATAAAAATGT
*
64220899 ATTTAAATTTAA
1 ATTTAATTTTAA
*
64220911 AATTAATTTTAA
1 ATTTAATTTTAA
64220923 ATTTAATTTT
1 ATTTAATTTT
64220933 TGGTACAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTAATTTTAA
Found at i:64222581 original size:10 final size:10
Alignment explanation
Indices: 64222566--64222594 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
64222556 ATTAGGCTTT
64222566 ATATATATAC
1 ATATATATAC
64222576 ATATATATAC
1 ATATATATAC
64222586 ATATATATA
1 ATATATATA
64222595 ATTTCTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:64224101 original size:55 final size:55
Alignment explanation
Indices: 64224035--64224144 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
64224025 GGATTTTACA
64224035 ACTGTGCAAACCAAAACAAAAAACACCAAGGATTTGTTTATGTAGTTCAGTTTTC
1 ACTGTGCAAACCAAAACAAAAAACACCAAGGATTTGTTTATGTAGTTCAGTTTTC
*
64224090 ACTGTGCAAACCAAAACAAAGAACACCAAGGATTTGTTTATGTAGTTCAGTTTTC
1 ACTGTGCAAACCAAAACAAAAAACACCAAGGATTTGTTTATGTAGTTCAGTTTTC
64224145 CTACGTCTGC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.29
Consensus pattern (55 bp):
ACTGTGCAAACCAAAACAAAAAACACCAAGGATTTGTTTATGTAGTTCAGTTTTC
Found at i:64228620 original size:28 final size:27
Alignment explanation
Indices: 64228557--64228708 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
64228547 ATATTAAGTC
* * *
64228557 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
64228584 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
64228612 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
64228639 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
64228667 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
64228694 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64228709 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:64228641 original size:55 final size:55
Alignment explanation
Indices: 64228557--64228708 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
64228547 ATATTAAGTC
* * *
64228557 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
64228612 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
64228667 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
64228709 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:64237086 original size:42 final size:43
Alignment explanation
Indices: 64236986--64237100 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
64236976 CTGAGACATT
* * * *
64236986 GTGTAAGACCGTATCTGGGACATAGGCCTCGATTGAGATTTAC
1 GTGTAAGACCATGTCTAGGACATAGGCATCGATTGAGATTTAC
* * *
64237029 GTATAAGACCATGTCTAGGACATCGGCATCGTATT-TGATTT-C
1 GTGTAAGACCATGTCTAGGACATAGGCATCG-ATTGAGATTTAC
* *
64237071 GTGTAAGACCCTGTCTAGGACAAAGGCATC
1 GTGTAAGACCATGTCTAGGACATAGGCATC
64237101 AATATTGCAT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 27 0.45
43 30 0.50
44 3 0.05
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACATAGGCATCGATTGAGATTTAC
Found at i:64240293 original size:29 final size:28
Alignment explanation
Indices: 64240257--64240334 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
64240247 TCATGAGATT
64240257 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
64240287 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
64240314 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
64240335 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:64240608 original size:173 final size:174
Alignment explanation
Indices: 64240287--64240613 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
64240277 AAATTGTACA
* *
64240287 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
64240352 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
64240417 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
64240461 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
64240526 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
64240590 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
64240614 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:64250848 original size:148 final size:143
Alignment explanation
Indices: 64250504--64251113 Score: 793
Period size: 148 Copynumber: 4.2 Consensus size: 143
64250494 AACATTTCAA
* * *
64250504 CTCATATTGCGAGAGGTGAAGTTGAGGCCTCAGGGCCAC-CGAAGGTATTTT--AATTTCTGTTC
1 CTCATATTGCGAGAGGTG-AGTTGA-GCCTCA-GGTCACGCTAAGGTATTTTCAAATTTCTGTTT
64250566 TCAATTTACGTTGTTCAAGAAATC-ACTCATATTGCGAGAGGTGGGTTGAAACCTTTTAATTTCT
63 TCAATTTACGTTGTTCAAGAAATCAACTCATATTGCGAGAGGTGGGTTGAAACCTTTTAATTTCT
64250630 AGCTTTTTCAAAATC-G
128 A-CTTTTTCAAAATCAG
* *
64250646 CTCCATATTGCGAGGAGATGAGTTGAAGCCTCAGGTCAACGCTGAGGTATTTTC-AATTTCTGTT
1 CT-CATATTGCGA-GAGGTGAGTTG-AGCCTCAGGTC-ACGCTAAGGTATTTTCAAATTTCTGTT
*
64250710 TTCAATTTACCATTGTTCCAAG-AATCAACTCATATTGC-AGAGGGTGGGTTTG-AACCTTTTAA
62 TTCAATTTA-CGTTGTT-CAAGAAATCAACTCATATTGCGAGA-GGTGGG-TTGAAACCTTTTAA
64250772 TTTCCTAACTTTTTCAAAATCAG
123 TTT-CT-ACTTTTTCAAAATCAG
64250795 CTCATATTGCGAGAGGTGAGTTTTTGAGCCTCAGGTCACGCTAAGGTATTTTCAAATTTCTGTTT
1 CTCATATTGCGAGAGGTGAG---TTGAGCCTCAGGTCACGCTAAGGTATTTTCAAATTTCTGTTT
*
64250860 TCAATTTACGTTG-TCAAGAAATCAACTCCATATTGCGCAGAAGTGGGTTG-AACCTTTTAATAT
63 TCAATTTACGTTGTTCAAGAAATCAACT-CATATTGCG-AGAGGTGGGTTGAAACCTTTTAAT-T
64250923 TCCTACTTTTTCAAAATCAG
125 T-CTACTTTTTCAAAATCAG
* *
64250943 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGA-GTATTTTCAAATTTCCTGTTTTC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAAATTT-CTGTTTTC
*
64251007 -A-TTATGTTGTTCAAG-AATCAACTCATAATTGCGAGAGGTGGGTTGAAACCTTTTAATTTCTA
65 AATTTACGTTGTTCAAGAAATCAACTCAT-ATTGCGAGAGGTGGGTTGAAACCTTTTAATTTCTA
64251069 CTTTTTCAAAATCAAG
129 CTTTTTCAAAATC-AG
*
64251085 CTCATATTGCGAGATGTGAGTT-AGCCTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCA
64251114 AGTTCAACAT
Statistics
Matches: 425, Mismatches: 15, Indels: 57
0.86 0.03 0.11
Matches are distributed among these distances:
141 23 0.05
142 44 0.10
143 55 0.13
144 36 0.08
145 46 0.11
146 17 0.04
147 50 0.12
148 104 0.24
149 44 0.10
150 6 0.01
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (143 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAAATTTCTGTTTTCA
ATTTACGTTGTTCAAGAAATCAACTCATATTGCGAGAGGTGGGTTGAAACCTTTTAATTTCTACT
TTTTCAAAATCAG
Found at i:64251250 original size:70 final size:69
Alignment explanation
Indices: 64251158--64251304 Score: 192
Period size: 76 Copynumber: 2.0 Consensus size: 69
64251148 CTTTCAAAAA
64251158 AAAATTCAAACTCATATTGCGAG-AATGA-TGAGCCTCAAGACACGTTGAGGTAATTTCCAATTT
1 AAAATTCAAACTCATATTGCGAGAAATGATTGAGCCTCAA-ACACGTTGAGGTAATTT-CAA-TT
64251221 TCTGTTTC
63 TCTG-TTC
64251229 AAAATTC-AACTCATATTGCGAGAAAAAAAATGATTGAGCCTCAAACACGTTGAGGTAATTTCAA
1 AAAATTCAAACTCATATTGCGAG-----AAATGATTGAGCCTCAAACACGTTGAGGTAATTTCAA
64251293 TTTCTGTTC
61 TTTCTGTTC
64251302 AAA
1 AAA
64251305 TGAGTTTGAG
Statistics
Matches: 69, Mismatches: 0, Indels: 12
0.85 0.00 0.15
Matches are distributed among these distances:
70 15 0.22
71 7 0.10
73 6 0.09
74 6 0.09
75 3 0.04
76 22 0.32
77 10 0.14
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (69 bp):
AAAATTCAAACTCATATTGCGAGAAATGATTGAGCCTCAAACACGTTGAGGTAATTTCAATTTCT
GTTC
Found at i:64251485 original size:83 final size:76
Alignment explanation
Indices: 64251302--64251600 Score: 272
Period size: 74 Copynumber: 3.8 Consensus size: 76
64251292 ATTTCTGTTC
* * * *
64251302 AAATGAGTTTGAGCCCTCAAGACCACGGCTGAGGTAATTTCA-ATTTCTG-TTTTC--AAAATTT
1 AAATGAG-TTGAG-CCTCAAGA-CA-TGCTGAGGTATTTTCACATTTCTGTTTTTCAAAAAAATC
64251363 AACTCATATTGCGAG
62 AACTCATATTGCGAG
* ** *
64251378 AAAATTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTTTCATTTGTGTTTTTTTCAAACAACAA
1 -AAA-TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCACATTTCTG--TTTTTC--A-AA-AA
*
64251443 AATCAACTCATATTGGTGAG
58 AATCAACTCATATT-GCGAG
64251463 AAATGAGTTGAGCCTCAAGACATGC-GAGGT-TTTTCACATTTCTGTTTTTCAAAAAAATCAACT
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCACATTTCTGTTTTTCAAAAAAATCAACT
64251526 CATATTGCGAG
66 CATATTGCGAG
** * * * *
64251537 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA-ATTTCCTG-TTGTCAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCACATTT-CTGTTTTTC-AAAAAAATCAA
64251600 C
64 C
64251601 ACCGGGTATT
Statistics
Matches: 186, Mismatches: 20, Indels: 33
0.78 0.08 0.14
Matches are distributed among these distances:
74 37 0.20
75 37 0.20
76 30 0.16
77 9 0.05
78 8 0.04
79 6 0.03
81 11 0.06
82 5 0.03
83 22 0.12
84 17 0.09
85 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (76 bp):
AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCACATTTCTGTTTTTCAAAAAAATCAACT
CATATTGCGAG
Found at i:64251567 original size:75 final size:75
Alignment explanation
Indices: 64251302--64251600 Score: 270
Period size: 75 Copynumber: 3.8 Consensus size: 75
64251292 ATTTCTGTTC
* *
64251302 AAATGAGTTTGAGCCCTCAAGACCACGGCTGAGGTAATTTCAATTTCTGTTTTC---AAAATTTA
1 AAATGAG-TTGAG-CCTCAAGA-CAC-GCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAAATCA
64251364 ACTCATATTGCGAG
62 ACTCATATTGCGAG
* * * *
64251378 AAAATTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTTTC-ATTTGTGTTTTTTTCAAACAACA
1 -AAA-TGAGTTGAGCCTCAAGACACGCTGAGGTA--ATTTCAATTTCTG---TTTTC-AA-AA-A
*
64251442 AAATCAACTCATATTGGTGAG
56 AAATCAACTCATATT-GCGAG
* *
64251463 AAATGAGTTGAGCCTCAAGACATGC-GAGGT-TTTTCACATTTCTGTTTTTC-AAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA-ATTTCTG-TTTTCAAAAAAAATCAAC
64251525 TCATATTGCGAG
64 TCATATTGCGAG
** * *
64251537 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCCTGTTGTCAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT-CTGTTTTCAAAAAAAATCAAC
64251601 ACCGGGTATT
Statistics
Matches: 187, Mismatches: 16, Indels: 39
0.77 0.07 0.16
Matches are distributed among these distances:
74 34 0.18
75 37 0.20
76 34 0.18
77 9 0.05
78 8 0.04
79 11 0.06
81 6 0.03
82 5 0.03
83 22 0.12
84 17 0.09
85 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAAATCAACTC
ATATTGCGAG
Found at i:64252149 original size:30 final size:29
Alignment explanation
Indices: 64252094--64252152 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
64252084 CAACTCATAT
64252094 GCGAGAGGTGAGTTGAGCTTTTTAATTTC
1 GCGAGAGGTGAGTTGAGCTTTTTAATTTC
*
64252123 GCGAGAGTTGAGTTGAGAAC-TTTTAATTTC
1 GCGAGAGGTGAGTTGAG--CTTTTTAATTTC
64252153 TGTTTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 16 0.59
30 10 0.37
31 1 0.04
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (29 bp):
GCGAGAGGTGAGTTGAGCTTTTTAATTTC
Found at i:64257640 original size:38 final size:38
Alignment explanation
Indices: 64257589--64257900 Score: 220
Period size: 38 Copynumber: 7.6 Consensus size: 38
64257579 ACCACATTTC
*
64257589 ATATCCACTTAGCACCACATTACATGTTTAAACGTGGT
1 ATATCCACTTAGCACCACGTTACATGTTTAAACGTGGT
* *
64257627 ATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAATCATGGC
1 ATATCCACTTAGCACCACGTTACATG--T---T-TA---AA-CGTGGT
* *
64257674 ATATCCACTTAGGACCACGTTACATGTTTAACCGTGGT
1 ATATCCACTTAGCACCACGTTACATGTTTAAACGTGGT
*
64257712 ATATCCACTTA-CACCACGTTA-ATGAATCAATATATGTAACCGTGGC
1 ATATCCACTTAGCACCACGTTACATG--T---T-TA---AA-CGTGGT
*
64257758 ATATCCACTTAGCACCACGTTACATGTTTAACCGTGGT
1 ATATCCACTTAGCACCACGTTACATGTTTAAACGTGGT
* *
64257796 ATAT-CACTTAGCACCACATTA-ATGAATCAATATATGTAACCGTGGC
1 ATATCCACTTAGCACCACGTTACATG--T---T-TA---AA-CGTGGT
* *
64257842 ATATCCACTTAGCACCACGTTACATGTATAACCGTGGT
1 ATATCCACTTAGCACCACGTTACATGTTTAAACGTGGT
64257880 ATATCCACTTAGCACCACGTT
1 ATATCCACTTAGCACCACGTT
64257901 TTTTCATTCC
Statistics
Matches: 220, Mismatches: 19, Indels: 70
0.71 0.06 0.23
Matches are distributed among these distances:
36 6 0.03
37 28 0.13
38 73 0.33
39 4 0.02
41 2 0.01
42 11 0.05
43 4 0.02
45 2 0.01
46 30 0.14
47 51 0.23
48 9 0.04
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (38 bp):
ATATCCACTTAGCACCACGTTACATGTTTAAACGTGGT
Found at i:64257775 original size:84 final size:85
Alignment explanation
Indices: 64257588--64257900 Score: 549
Period size: 84 Copynumber: 3.7 Consensus size: 85
64257578 CACCACATTT
* *
64257588 CATATCCACTTAGCACCACATTACATGTTTAAACGTGGTATATCCACTTAGCACCACGTTAATGA
1 CATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
* *
64257653 ATCAATATATGTAATCATGG
66 ATCAATATATGTAACCGTGG
*
64257673 CATATCCACTTAGGACCACGTTACATGTTTAACCGTGGTATATCCACTTA-CACCACGTTAATGA
1 CATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
64257737 ATCAATATATGTAACCGTGG
66 ATCAATATATGTAACCGTGG
*
64257757 CATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATAT-CACTTAGCACCACATTAATGA
1 CATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
64257821 ATCAATATATGTAACCGTGG
66 ATCAATATATGTAACCGTGG
*
64257841 CATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 CATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
64257901 TTTTCATTCC
Statistics
Matches: 217, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
83 6 0.03
84 149 0.69
85 62 0.29
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
CATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
ATCAATATATGTAACCGTGG
Found at i:64259491 original size:11 final size:11
Alignment explanation
Indices: 64259475--64259501 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
64259465 TTCACTTTAC
64259475 AACTTTACAGA
1 AACTTTACAGA
64259486 AACTTTACAGA
1 AACTTTACAGA
64259497 AACTT
1 AACTT
64259502 AATCTGTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (11 bp):
AACTTTACAGA
Found at i:64260630 original size:15 final size:15
Alignment explanation
Indices: 64260607--64260648 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
64260597 AGAACCCAGA
64260607 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
64260622 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
64260637 ATAAGGAAATCC
1 ATAAGGAAATCC
64260649 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:64262076 original size:27 final size:27
Alignment explanation
Indices: 64262046--64262186 Score: 175
Period size: 27 Copynumber: 5.3 Consensus size: 27
64262036 GTGACGAAGT
64262046 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
64262073 CACCAGA-A-AGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
64262099 CACTAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
64262126 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
64262153 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
64262180 CACCAGA
1 CACCAGA
64262187 ACGCTTCCTC
Statistics
Matches: 99, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
25 6 0.06
26 20 0.20
27 69 0.70
28 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:64262152 original size:54 final size:54
Alignment explanation
Indices: 64262046--64262185 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
64262036 GTGACGAAGT
*
64262046 CACCAGATACAGAT-ATTGTGGCAGAGCCACCA-GAAAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGAAAGATATATGTGGCAGAGC
* *
64262099 CACTAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAAAGATATATGTGGCAGAGC
64262153 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
64262186 AACGCTTCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
52 5 0.06
53 24 0.30
54 52 0.64
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGAAAGATATATGTGGCAGAGC
Found at i:64262591 original size:8 final size:8
Alignment explanation
Indices: 64262575--64262604 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
64262565 CTCAAAATAC
64262575 CGGCTTTT
1 CGGCTTTT
*
64262583 CGGCATTT
1 CGGCTTTT
64262591 CGGCTTTT
1 CGGCTTTT
64262599 CGGCTT
1 CGGCTT
64262605 GTGACGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:64266965 original size:38 final size:41
Alignment explanation
Indices: 64266922--64267423 Score: 332
Period size: 38 Copynumber: 11.7 Consensus size: 41
64266912 TTAACATGTA
* *
64266922 TAACCGTGGCATATCCACTTAGCACCATGTTAC-AT-T-TT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
*
64266960 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
** * *
64267007 TAACCGTGACATATCCATTTAGCACCACGTTAC---ATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
* * * *
64267045 TAACCATGGTATATCCACATAGCAACACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
* *
64267092 TAACCGTGGCATATCCACTTAGCACCACGTTAC---ATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
* *
64267130 TAGCCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
*
64267177 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA---AT--ATAT-T
* *
64267224 GTAATCGTGGTATATCCACTTAGCACCACGTTAC-ATGTA--
1 -TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
*
64267263 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
**
64267310 TAACCGTGACATATCCACTTAGCACCACGTTACATGTATCAATATGT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA---AT--ATAT-T
* * *
64267357 GTAATCGTGGTATATCCACTTAGCACCACGTT---ATATGTA
1 -TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
*
64267396 TAACCGTGGTAAATCCACTTAGCACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
64267424 ATTTTTTCAT
Statistics
Matches: 370, Mismatches: 44, Indels: 100
0.72 0.09 0.19
Matches are distributed among these distances:
38 137 0.37
39 4 0.01
40 3 0.01
41 10 0.03
42 8 0.02
43 4 0.01
44 14 0.04
45 6 0.02
46 13 0.04
47 112 0.30
48 59 0.16
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (41 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
Found at i:64267068 original size:85 final size:85
Alignment explanation
Indices: 64266922--64267423 Score: 572
Period size: 85 Copynumber: 5.8 Consensus size: 85
64266912 TTAACATGTA
* *
64266922 TAACCGTGGCATATCCACTTAGCACCATGTTACATTTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
64266987 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * * *
64267007 TAACCGTGACATATCCATTTAGCACCACGTTACATGTTTAACCATGGTATATCCACATAGCAACA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
64267072 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
64267092 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAGCCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
64267157 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
64267177 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATG--------T-T-TAACCGTGGTATATCCA
*
64267242 CTTAGCACCACG-T--T--A-C-ATGTA--
56 CTTAGCACCACGTTAATGAATCAATATATG
* * **
64267263 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGACATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-TAACCGTGGTATATCCAC
* *
64267328 TTAGCACCACGTTACATGTATCAATATGTG
57 TTAGCACCACGTTA-ATGAATCAATATATG
* * * * *
64267358 TAATCGTGGTATATCCACTTAGCACCACGTTATATGTATAACCGTGGTAAATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
64267423 C
66 C
64267424 ATTTTTTCAT
Statistics
Matches: 359, Mismatches: 31, Indels: 53
0.81 0.07 0.12
Matches are distributed among these distances:
85 222 0.62
86 54 0.15
87 1 0.00
88 7 0.02
89 3 0.01
90 2 0.01
91 2 0.01
92 4 0.01
93 6 0.02
94 3 0.01
95 55 0.15
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:64267239 original size:48 final size:48
Alignment explanation
Indices: 64267133--64267396 Score: 354
Period size: 48 Copynumber: 5.8 Consensus size: 48
64267123 ACATGTTTAG
*
64267133 CCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
* *
64267180 CCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
*
64267228 TCGTGGTATATCCACTTAGCACCACGTTACATG--------TA--TAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
*
64267266 CCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
** *
64267313 CCGTGACATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
* *
64267361 TCGTGGTATATCCACTTAGCACCACGTTATATGTAT
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTAT
64267397 AACCGTGGTA
Statistics
Matches: 190, Mismatches: 15, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
37 3 0.02
38 31 0.16
40 1 0.01
45 2 0.01
47 58 0.31
48 95 0.50
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (48 bp):
CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
Found at i:64267282 original size:133 final size:133
Alignment explanation
Indices: 64267045--64267423 Score: 634
Period size: 133 Copynumber: 2.9 Consensus size: 133
64267035 GTTACATGTT
* * * * * * * *
64267045 TAACCATGGTATATCCACATAGCAACACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
* *
64267109 CTTAGCACCACGTTACATGTTTAGCCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATAT
66 CTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATAT
64267174 ATG
131 ATG
64267177 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
64267242 CTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATAT
66 CTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATAT
64267307 ATG
131 ATG
*
64267310 TAACCGTGACATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
* *
64267375 CTTAGCACCACGTTATATGTATAACCGTGGTAAATCCACTTAGCACCAC
66 CTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCAC
64267424 ATTTTTTCAT
Statistics
Matches: 233, Mismatches: 13, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
132 28 0.12
133 205 0.88
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (133 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
CTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATAT
ATG
Found at i:64270140 original size:15 final size:15
Alignment explanation
Indices: 64270122--64270163 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
64270112 GAAGCCCAGA
64270122 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
64270137 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
64270152 ATAAGGAAATCC
1 ATAAAGAAATCC
64270164 CATTTATAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.17
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:64272920 original size:47 final size:44
Alignment explanation
Indices: 64272828--64273062 Score: 182
Period size: 38 Copynumber: 5.6 Consensus size: 44
64272818 TTAACATGTA
* * *
64272828 TAACCGTGGCATATCCACTTAGCACCAC-GT--T-A-CAT-TTT
1 TAACCGTGGTATATCCACTTAGCACCACATTAATAATCATATTG
*
64272866 TAACCGTGGTATATCCACTTAGTACCACATTAATAAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACATTAAT-AATC-ATAT-TG
* *
64272913 TAACCGTGGCATATCCACTTAGCACCACA-T--T-A-CATGTT-
1 TAACCGTGGTATATCCACTTAGCACCACATTAATAATCATATTG
* *
64272951 TAACCATGGTATATCCACTTAGCACCATATTAATTAATCGATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACATTAA-TAATC-ATAT-TG
* * **
64272998 TAATCGTGGTATATCCACTTAGCACCACGTT-A-AAT-GGA---
1 TAACCGTGGTATATCCACTTAGCACCACATTAATAATCATATTG
64273036 TAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGTATATCCACTTAGCACCA
64273063 TGTTTTTTCA
Statistics
Matches: 161, Mismatches: 18, Indels: 36
0.75 0.08 0.17
Matches are distributed among these distances:
38 78 0.48
39 3 0.02
40 3 0.02
41 2 0.01
42 3 0.02
43 2 0.01
44 6 0.04
45 5 0.03
46 4 0.02
47 55 0.34
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
TAACCGTGGTATATCCACTTAGCACCACATTAATAATCATATTG
Found at i:64273063 original size:85 final size:85
Alignment explanation
Indices: 64272823--64273063 Score: 356
Period size: 85 Copynumber: 2.8 Consensus size: 85
64272813 TCAAGTTAAC
* *
64272823 ATGTATAACCGTGGCATATCCACTTAGCACCACGTTACATTTTTAACCGTGGTATATCCACTTAG
1 ATGTGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAG
* *
64272888 TACCACATTAATAAATCAAT
66 CACCATATTAATAAATCAAT
* * *
64272908 ATATGTAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAG
1 ATGTGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAG
* *
64272973 CACCATATTAATTAATCGAT
66 CACCATATTAATAAATCAAT
* * * **
64272993 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAAATGGATAACCGTGGTATATCCACTTAG
1 ATGTGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAG
64273058 CACCAT
66 CACCAT
64273064 GTTTTTTCAT
Statistics
Matches: 139, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 139 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (85 bp):
ATGTGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAG
CACCATATTAATAAATCAAT
Found at i:64278520 original size:35 final size:36
Alignment explanation
Indices: 64278481--64278553 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 36
64278471 ATAATATAAA
64278481 GCATAAG-TATA-AA-ATCAATCAAAACCATAAGCTTG
1 GCATAAGCTATACAACATC-ATCAAAACCATAAG-TTG
*
64278516 GCATAAGCCTATACAACATCATCAAAATCATAAGTTG
1 GCATAAG-CTATACAACATCATCAAAACCATAAGTTG
64278553 G
1 G
64278554 TACTCTTGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 7 0.21
37 8 0.24
38 15 0.45
39 3 0.09
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.23
Consensus pattern (36 bp):
GCATAAGCTATACAACATCATCAAAACCATAAGTTG
Found at i:64279455 original size:21 final size:21
Alignment explanation
Indices: 64279413--64279456 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
64279403 TTTTGATGTC
*
64279413 TAATGGTAGATTATACAATTT
1 TAATGGTAGATTAAACAATTT
*
64279434 TAATGTTAGA-TAAACAACTTT
1 TAATGGTAGATTAAACAA-TTT
64279455 TA
1 TA
64279457 CTAGGTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (21 bp):
TAATGGTAGATTAAACAATTT
Found at i:64280105 original size:43 final size:42
Alignment explanation
Indices: 64280003--64280110 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 42
64279993 TGAGATTACG
**
64280003 TGTAAGACTATATCTGGGATATGGCATCGATATGAAACTTTG
1 TGTAAGACTATATCTGGGATATGGCATCGATATGAAACTTCA
* * * * *
64280045 TGTAAGACCATAGCTGGGCTATTGGCATTGATATGAGA-TCTCA
1 TGTAAGACTATATCTGGGATA-TGGCATCGATATGAAACT-TCA
* *
64280088 TGTAGGACTATATCTGGGGTATG
1 TGTAAGACTATATCTGGGATATG
64280111 ACACTGGTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 21 0.40
43 32 0.60
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACTATATCTGGGATATGGCATCGATATGAAACTTCA
Found at i:64286439 original size:13 final size:13
Alignment explanation
Indices: 64286418--64286449 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
64286408 TTCAATATGT
*
64286418 CACACGGCCAAGG
1 CACATGGCCAAGG
64286431 CACATGGCCAAGG
1 CACATGGCCAAGG
64286444 CACATG
1 CACATG
64286450 CCCGTGTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.34, G:0.28, T:0.06
Consensus pattern (13 bp):
CACATGGCCAAGG
Found at i:64296357 original size:21 final size:21
Alignment explanation
Indices: 64296333--64296376 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
64296323 TCTATTTTCT
64296333 TGAT-ATAATTGGCTATATG-CA
1 TGATAATAA-TGGCTA-ATGTCA
64296354 TGATAATAATGGCTAATGTCA
1 TGATAATAATGGCTAATGTCA
64296375 TG
1 TG
64296377 TTTTCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.14
21 14 0.67
22 4 0.19
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (21 bp):
TGATAATAATGGCTAATGTCA
Found at i:64297045 original size:46 final size:46
Alignment explanation
Indices: 64296985--64297106 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 46
64296975 ATAGCCGATG
*
64296985 CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCAAGGCCACTG-
1 CATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAGGCCACTGC
* * * * * *
64297031 TATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAATGCCATTGC
1 CATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCAAGGCCACTGC
64297078 CATGTCCC-GAACATGGTCTTACACTGGCT
1 CATGTCCCAG-ACAT-GTCTTACACTGGCT
64297107 CTCAGAATGT
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
46 38 0.61
47 12 0.19
48 12 0.19
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAGGCCACTGC
Found at i:64304671 original size:46 final size:48
Alignment explanation
Indices: 64304491--64304757 Score: 164
Period size: 46 Copynumber: 5.7 Consensus size: 48
64304481 GTAAGTTACC
* * *
64304491 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCG-TGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACT--CATCT-CGAGGCT
* * * *
64304541 GACGCCATGTCCCAGACATGGTCTTATACT-G-ACACATCTCGTAGGC-
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCATCTCG-AGGCT
* * * * *
64304587 GATG-CATCTCCCAGACAT-GTCTTACACTGGC-TTACGTCTCGAGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACT-CATCTCGAGGCT
* ** *
64304633 GATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTCTTAATG-T
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCATCTCGAGGCT
* * * * * * *
64304678 CGTTGCCATGTCCCGAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 -GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCAT-CTCGAGGCT
*
64304727 GATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGC
64304758 TCACGCAAGT
Statistics
Matches: 171, Mismatches: 34, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
44 9 0.05
45 21 0.12
46 63 0.37
47 28 0.16
48 21 0.12
49 2 0.01
50 27 0.16
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCATCTCGAGGCT
Found at i:64307735 original size:39 final size:38
Alignment explanation
Indices: 64307708--64307866 Score: 210
Period size: 39 Copynumber: 4.1 Consensus size: 38
64307698 TGTCCAGCAC
* * *
64307708 ATAGCCTGCGGACCTAAAGTCTGGATATTATTCTCGCAT
1 ATAGCCTACGGACCTGAAGTCCGGATA-TATTCTCGCAT
* * *
64307747 ACAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTACGGACCTGAAGTCCGGATAT-ATTCTCGCAT
* *
64307786 ATATCCTACGGACCTGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTACGGACCTGAAGTCCGGATAT-ATTCTCGCAT
64307825 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTACGGACCTGAAGTCCGGATAT-ATTCTCGCAT
64307864 ATA
1 ATA
64307867 TATATTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 107 0.99
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (38 bp):
ATAGCCTACGGACCTGAAGTCCGGATATATTCTCGCAT
Found at i:64307806 original size:78 final size:78
Alignment explanation
Indices: 64307716--64307867 Score: 241
Period size: 78 Copynumber: 1.9 Consensus size: 78
64307706 ACATAGCCTG
* * *
64307716 CGGACCTAAAGTCTGGATATTATTCTCGCATACAGCCTGCGGACATGAAGTCCGGATATAATTCT
1 CGGACCTAAAGTCCGGATATAATTCTCGCATACAGCCTACGGACATGAAGTCCGGATATAATTCT
64307781 CGCATATATCCTA
66 CGCATATATCCTA
* * * *
64307794 CGGACCTGAAGTCCGGATATAATTCTCGCTTATAGCCTACGGACCTGAAGTCCGGATATAATTCT
1 CGGACCTAAAGTCCGGATATAATTCTCGCATACAGCCTACGGACATGAAGTCCGGATATAATTCT
64307859 CGCATATAT
66 CGCATATAT
64307868 ATATTTACAT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 67 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (78 bp):
CGGACCTAAAGTCCGGATATAATTCTCGCATACAGCCTACGGACATGAAGTCCGGATATAATTCT
CGCATATATCCTA
Found at i:64317474 original size:25 final size:24
Alignment explanation
Indices: 64317445--64317517 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 24
64317435 AAGTATGCAA
64317445 TCGGCCTAAACATAGACATGCATGT
1 TCGGCCT-AACATAGACATGCATGT
* *
64317470 TCGGCC--ACA-CGA-ATG---GA
1 TCGGCCTAACATAGACATGCATGT
64317487 TCGGCCTCAACATAGACATGCATGT
1 TCGGCCT-AACATAGACATGCATGT
64317512 TCGGCC
1 TCGGCC
64317518 ACACGAATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
17 7 0.19
20 6 0.17
21 4 0.11
22 6 0.17
25 13 0.36
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (24 bp):
TCGGCCTAACATAGACATGCATGT
Done.