Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 188 of 311
Found at i:64678184 original size:10 final size:10
Alignment explanation
Indices: 64678116--64678194 Score: 52
Period size: 10 Copynumber: 7.4 Consensus size: 10
64678106 GAACTTCTAG
*
64678116 AAAATCATAA
1 AAAATTATAA
*
64678126 AAAAATATAGA
1 AAAATTATA-A
*
64678137 AAATTATTTTAA
1 AAA--ATTATAA
*
64678149 AAAATTAGTTAT
1 AAAATTA--TAA
64678161 AAAATTATAGA
1 AAAATTATA-A
64678172 AAAATTAT-A
1 AAAATTATAA
*
64678181 AAAATTCTAA
1 AAAATTATAA
64678191 AAAA
1 AAAA
64678195 AAAAATACTA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
9 8 0.15
10 17 0.31
11 12 0.22
12 13 0.24
13 4 0.07
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (10 bp):
AAAATTATAA
Found at i:64681205 original size:14 final size:14
Alignment explanation
Indices: 64681182--64681214 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
64681172 ATTGTGTATT
*
64681182 TAAA-AATTAAAAG
1 TAAATAATTAAAAA
64681195 TAAATAATTAAAAA
1 TAAATAATTAAAAA
64681209 TAAATA
1 TAAATA
64681215 GAGTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
TAAATAATTAAAAA
Found at i:64682212 original size:12 final size:12
Alignment explanation
Indices: 64682197--64682222 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64682187 CGAGTTTTGA
64682197 TTCTTTAATTCT
1 TTCTTTAATTCT
64682209 TTCTTTAATTCT
1 TTCTTTAATTCT
64682221 TT
1 TT
64682223 AATTTAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (12 bp):
TTCTTTAATTCT
Found at i:64691238 original size:27 final size:27
Alignment explanation
Indices: 64691200--64691280 Score: 153
Period size: 27 Copynumber: 3.0 Consensus size: 27
64691190 CTTAACCAAC
64691200 TCGTGAAGAGTTATGGTCAAAATGAAA
1 TCGTGAAGAGTTATGGTCAAAATGAAA
64691227 TCGTGAAGAGTTATGGTCAAAATGAAA
1 TCGTGAAGAGTTATGGTCAAAATGAAA
*
64691254 TCGTGAAGAGTTATGATCAAAATGAAA
1 TCGTGAAGAGTTATGGTCAAAATGAAA
64691281 GGGGATGTTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.26
Consensus pattern (27 bp):
TCGTGAAGAGTTATGGTCAAAATGAAA
Found at i:64693740 original size:16 final size:16
Alignment explanation
Indices: 64693719--64693752 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
64693709 TATAGCATTA
64693719 TATTTTATGTTAATTG
1 TATTTTATGTTAATTG
64693735 TATTTTATGTTAATTG
1 TATTTTATGTTAATTG
64693751 TA
1 TA
64693753 CACTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (16 bp):
TATTTTATGTTAATTG
Found at i:64694293 original size:20 final size:22
Alignment explanation
Indices: 64694270--64694310 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
64694260 AATTAAGAAA
64694270 ATATA-TCAAAAA-TTTAAAAT
1 ATATATTCAAAAATTTTAAAAT
*
64694290 ATATATTTAAAAATTTTAAAA
1 ATATATTCAAAAATTTTAAAA
64694311 AATAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATATTCAAAAATTTTAAAAT
Found at i:64695012 original size:21 final size:22
Alignment explanation
Indices: 64694956--64695012 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 22
64694946 CTTGAATGTC
64694956 AAGTCTTGAAACTTCAACCTAT
1 AAGTCTTGAAACTTCAACCTAT
*
64694978 AAGT-TTTAATACTT-AACCTAT
1 AAGTCTTGAA-ACTTCAACCTAT
*
64694999 AAGTCTTGAGACTT
1 AAGTCTTGAAACTT
64695013 GGCTTGCTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.37
Consensus pattern (22 bp):
AAGTCTTGAAACTTCAACCTAT
Found at i:64695204 original size:12 final size:12
Alignment explanation
Indices: 64695187--64695212 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64695177 ATTCATACTC
64695187 ATGTTTAAATCA
1 ATGTTTAAATCA
64695199 ATGTTTAAATCA
1 ATGTTTAAATCA
64695211 AT
1 AT
64695213 TGAGGAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (12 bp):
ATGTTTAAATCA
Found at i:64697582 original size:44 final size:44
Alignment explanation
Indices: 64697514--64697690 Score: 137
Period size: 44 Copynumber: 4.0 Consensus size: 44
64697504 TTAACTTGAG
* * * *
64697514 AAAACGAGAAACACCATGGTTGAAAGATA-TCATGGCATTATACC
1 AAAATGAGAAAGACCATAGTTGAAAGATACT-ATGGCATTAAACC
*
64697558 AAAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAACT
1 AAAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAACC
* * * * * * *
64697602 GAATTG-GATAAGACCTTAGTTGAAAGATACTACGACACTT-TACTGA
1 AAAATGAGA-AAGACCATAGTTGAAAGATACTATGGCA-TTAAAC--C
* *
64697648 AAAATGA-ACAAAACCATAGTTGAAAAGATACTATGACATTAAA
1 AAAATGAGA-AAGACCATAGTTG-AAAGATACTATGGCATTAAA
64697691 TGTGATTGAA
Statistics
Matches: 106, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
43 2 0.02
44 68 0.64
45 3 0.03
46 18 0.17
47 15 0.14
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (44 bp):
AAAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAACC
Found at i:64697706 original size:46 final size:44
Alignment explanation
Indices: 64697570--64697730 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 44
64697560 AATGAGAAAG
* * * *
64697570 ACCATAGTTGAAAGATACTATGGCATTAAACTGAATTGGAT-AAG
1 ACCATAGTTGAAAGATACTACGACATTAAA-TGAATTGAATCAAA
* * * *
64697614 ACCTTAGTTGAAAGATACTACGACACTTTACTGAAAAATGAA-CAAA
1 ACCATAGTTGAAAGATACTACGACA-TTAAATG--AATTGAATCAAA
* *
64697660 ACCATAGTTGAAAAGATACTATGACATTAAATGTGATTGAATCAAA
1 ACCATAGTTG-AAAGATACTACGACATTAAATG-AATTGAATCAAA
*
64697706 ACCATAGTTAAAAGATACTACGACA
1 ACCATAGTTGAAAGATACTACGACA
64697731 CCACTTTGGG
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
44 24 0.26
45 22 0.23
46 34 0.36
47 14 0.15
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (44 bp):
ACCATAGTTGAAAGATACTACGACATTAAATGAATTGAATCAAA
Found at i:64700409 original size:27 final size:27
Alignment explanation
Indices: 64700378--64700528 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 27
64700368 TAAATTGTAC
*
64700378 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
64700405 TGCACTAAGTGTGCGAAATAAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64700431 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
64700459 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
64700487 AGCACTAAGTGTGAGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64700514 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64700529 GACTCAATAT
Statistics
Matches: 98, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
27 77 0.79
28 21 0.21
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64700439 original size:54 final size:55
Alignment explanation
Indices: 64700378--64700528 Score: 162
Period size: 55 Copynumber: 2.8 Consensus size: 55
64700368 TAAATTGTAC
* *
64700378 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATAAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGAATAAATATGT
* ** ** *
64700431 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTAACTATGT
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGAATAAATATGT
* * * * *
64700487 AGCACTAAGTGTGAGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
64700529 GACTCAATAT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 40 0.50
56 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGAATAAATATGT
Found at i:64704279 original size:16 final size:15
Alignment explanation
Indices: 64704244--64704286 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
64704234 AATGAATCAG
64704244 CAAAAG-CGAAAATGC
1 CAAAAGCCG-AAATGC
*
64704259 CAAAAGCTGAAATGC
1 CAAAAGCCGAAATGC
64704274 CGAAAAGCCGAAA
1 C-AAAAGCCGAAA
64704287 GTTGGGCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (15 bp):
CAAAAGCCGAAATGC
Found at i:64704565 original size:29 final size:29
Alignment explanation
Indices: 64704500--64704608 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 29
64704490 GCATGAGTAT
* * *
64704500 AATATGATTTGGGCCTAATGGGCAATATA-
1 AATATGAATTGGGCCTAGTGGGCCATA-AG
**
64704529 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATAAG
* **
64704558 AATATGAATTAGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATAAG
*
64704587 AATAAG-ATTGGGCCTAGTGGGC
1 AATATGAATTGGGCCTAGTGGGC
64704609 TATATGCATG
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
28 15 0.23
29 50 0.77
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATAAG
Found at i:64713393 original size:17 final size:18
Alignment explanation
Indices: 64713360--64713394 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
64713350 TTTTAAGAAG
64713360 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
64713378 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
64713395 TTCAATGTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:64716363 original size:48 final size:48
Alignment explanation
Indices: 64716299--64716533 Score: 247
Period size: 48 Copynumber: 4.9 Consensus size: 48
64716289 GGTTATGTGT
* * *
64716299 GAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGA
* * * ***
64716347 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCAATAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGA
* * ** * * *
64716394 CAAGCCAGTGTAAGACCATGTTTGAAACATGGTATCGGTATTGTTATGT
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGA
* * * *
64716443 GAGCCAGTGTAAGACCATGTCTGGGACATGACATCGACACTGATGTATGG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-T-TATGA
*
64716493 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
64716534 TTACCCTTTT
Statistics
Matches: 149, Mismatches: 34, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
47 1 0.01
48 104 0.70
49 1 0.01
50 43 0.29
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGA
Found at i:64720558 original size:46 final size:45
Alignment explanation
Indices: 64720491--64720660 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
64720481 TGTAACCCGC
64720491 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGC-TTCGCAT
* * *
64720537 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG--GCTTCGCAT
* *** *
64720583 ACATTTCTCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGG-C-TTCGCAT
* *
64720630 CCATAAGTGAACTCGAACTCAACTTAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
64720661 TTCGGATGCC
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 65 0.64
47 32 0.32
48 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCTTCGCAT
Found at i:64720611 original size:93 final size:93
Alignment explanation
Indices: 64720499--64720670 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
64720489 GCCCATAAGT
* *
64720499 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
64720563 ACGAGCTCAGATGCCTAGTTACATTTCTC
65 ACGAGCTCAGATGCCTAGTTACATTTCTC
* *
64720592 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
* *
64720657 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
64720671 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATTTCTC
Found at i:64723100 original size:25 final size:25
Alignment explanation
Indices: 64723072--64723132 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
64723062 TTCAGTTCGT
64723072 ATGAGCTTACCCATACTCAACTCGC
1 ATGAGCTTACCCATACTCAACTCGC
* * * * *
64723097 ATGAGCTTATCGATATTCAGCTCGG
1 ATGAGCTTACCCATACTCAACTCGC
*
64723122 AGGAGCTTACC
1 ATGAGCTTACC
64723133 ATTATTCAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (25 bp):
ATGAGCTTACCCATACTCAACTCGC
Found at i:64725250 original size:40 final size:40
Alignment explanation
Indices: 64725204--64725367 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
64725194 CGGGATTTAA
*
64725204 CCGGATATAACAACTCATACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGC
* *
64725244 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGC
*** * *
64725284 CCGGATATAATTGCT-AGCATAAATGCCTTCGGGTCATAGC
1 CCGGATATAACAACTCA-CACAAATGCCTTCGGGTCTTAGC
* * * * *
64725324 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGC
64725364 CCGG
1 CCGG
64725368 TTATCATCCG
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGC
Found at i:64736283 original size:9 final size:9
Alignment explanation
Indices: 64736269--64736319 Score: 59
Period size: 9 Copynumber: 5.4 Consensus size: 9
64736259 CATTCTTTAA
64736269 ACATAACAT
1 ACATAACAT
64736278 ACATAACAT
1 ACATAACAT
64736287 ACAT-ACATT
1 ACATAACA-T
64736296 AAACATAACAT
1 --ACATAACAT
*
64736307 ACATAATAT
1 ACATAACAT
64736316 ACAT
1 ACAT
64736320 TCATAAATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
8 3 0.08
9 26 0.70
11 5 0.14
12 3 0.08
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (9 bp):
ACATAACAT
Found at i:64736308 original size:16 final size:16
Alignment explanation
Indices: 64736250--64736310 Score: 83
Period size: 16 Copynumber: 4.0 Consensus size: 16
64736240 TAAACAATGC
* *
64736250 TAAACATAACATTCTT
1 TAAACATAACATACAT
64736266 TAAACATAACATACA-
1 TAAACATAACATACAT
64736281 T-AACAT-ACATACAT
1 TAAACATAACATACAT
64736295 TAAACATAACATACAT
1 TAAACATAACATACAT
64736311 AATATACATT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
13 7 0.17
14 6 0.15
15 6 0.15
16 21 0.52
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.28
Consensus pattern (16 bp):
TAAACATAACATACAT
Found at i:64736337 original size:29 final size:30
Alignment explanation
Indices: 64736276--64736357 Score: 87
Period size: 32 Copynumber: 2.7 Consensus size: 30
64736266 TAAACATAAC
* *
64736276 ATACATAACATACATACATTAAACAT--AAC
1 ATACATAATATACATACA-TAAACATAAAAT
* *
64736305 ATACATAATATACATTCATAAATAGTAAAAT
1 ATACATAATATACATACATAAACA-TAAAAT
64736336 ACTACATAATATACATACATAA
1 A-TACATAATATACATACATAA
64736358 TAGACATGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 5 0.11
29 17 0.39
31 3 0.07
32 19 0.43
ACGTcount: A:0.55, C:0.16, G:0.01, T:0.28
Consensus pattern (30 bp):
ATACATAATATACATACATAAACATAAAAT
Found at i:64736391 original size:46 final size:47
Alignment explanation
Indices: 64736303--64736405 Score: 133
Period size: 46 Copynumber: 2.2 Consensus size: 47
64736293 ATTAAACATA
*
64736303 ACATACATAATATACATTCATAAATAGTAAAATACTACATAATA-T-
1 ACATACATAATAGACATTCATAAATAGTAAAATACTACATAATAGTC
*
64736348 ACATACATAATAGACATGTTCATAACA-A-TAATATACTACATAATAGTC
1 ACATACATAATAGACA--TTCATAA-ATAGTAAAATACTACATAATAGTC
64736396 ACATACATAA
1 ACATACATAA
64736406 CAGTAAAATA
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
45 15 0.29
46 16 0.31
47 9 0.18
48 11 0.22
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (47 bp):
ACATACATAATAGACATTCATAAATAGTAAAATACTACATAATAGTC
Found at i:64736392 original size:33 final size:32
Alignment explanation
Indices: 64736341--64736439 Score: 103
Period size: 33 Copynumber: 3.0 Consensus size: 32
64736331 AAAATACTAC
64736341 ATAATATACATACATAATAGACATGTTCATAACA
1 ATAATATAC-TACATAATAGACATG-TCATAACA
*
64736375 ATAATATACTACATAATAGTCACAT-ACATAACA
1 ATAATATACTACATAATAG--ACATGTCATAACA
* * * *
64736408 GTAAAATACTACATAACATACATG-CATAACA
1 ATAATATACTACATAATAGACATGTCATAACA
64736439 A
1 A
64736440 ACATATTCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
31 11 0.20
33 32 0.57
34 9 0.16
35 4 0.07
ACGTcount: A:0.52, C:0.17, G:0.05, T:0.26
Consensus pattern (32 bp):
ATAATATACTACATAATAGACATGTCATAACA
Found at i:64736415 original size:79 final size:79
Alignment explanation
Indices: 64736306--64736532 Score: 264
Period size: 79 Copynumber: 2.9 Consensus size: 79
64736296 AAACATAACA
* * * * * *
64736306 TACATAATA-T-ACATTCATAAATAGTAAAATACTACATAATATACATACATAATAGACATGTTC
1 TACATAATAGTCACATACAT-AACAGTAAAATACTACATAACATACATACATAACAAACATATTC
64736369 ATAACAATAATATAC
65 ATAACAATAATATAC
*
64736384 TACATAATAGTCACATACATAACAGTAAAATACTACATAACATACATGCATAACAAACATATTCA
1 TACATAATAGTCACATACATAACAGTAAAATACTACATAACATACATACATAACAAACATATTCA
* *
64736449 TAATAGTAATATAC
66 TAACAATAATATAC
* * * * * *
64736463 GACATAACT-GTCACATACATAACCGTAATATACCACATAACAAACATACATAACAATA-ATATA
1 TACATAA-TAGTCACATACATAACAGTAAAATACTACATAACATACATACATAACAA-ACATATT
64736526 CATAACA
64 CATAACA
64736533 TACATACATA
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 9 0.07
79 110 0.86
80 9 0.07
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.26
Consensus pattern (79 bp):
TACATAATAGTCACATACATAACAGTAAAATACTACATAACATACATACATAACAAACATATTCA
TAACAATAATATAC
Found at i:64736517 original size:9 final size:9
Alignment explanation
Indices: 64736505--64736585 Score: 60
Period size: 9 Copynumber: 8.6 Consensus size: 9
64736495 CCACATAACA
64736505 AACATACAT
1 AACATACAT
64736514 AACAATA-AT
1 AAC-ATACAT
64736523 ATACATAACAT
1 A-ACAT-ACAT
64736534 -ACATACAT
1 AACATACAT
64736542 AACATACAT
1 AACATACAT
*
64736551 AATA-ACAAT
1 AACATAC-AT
64736560 ATACATAACAGT
1 A-ACAT-ACA-T
*
64736572 AATATACAT
1 AACATACAT
64736581 AACAT
1 AACAT
64736586 GCTTTGGTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
8 6 0.10
9 31 0.53
10 11 0.19
11 6 0.10
12 4 0.07
ACGTcount: A:0.57, C:0.17, G:0.01, T:0.25
Consensus pattern (9 bp):
AACATACAT
Found at i:64736528 original size:15 final size:14
Alignment explanation
Indices: 64736497--64736585 Score: 91
Period size: 13 Copynumber: 6.6 Consensus size: 14
64736487 GTAATATACC
*
64736497 ACATAACA-AACAT
1 ACATAACATAATAT
64736510 ACATAACAATAATAT
1 ACATAAC-ATAATAT
*
64736525 ACATAACAT-ACAT
1 ACATAACATAATAT
*
64736538 ACATAACAT-ACAT
1 ACATAACATAATAT
64736551 A-ATAAC--AATAT
1 ACATAACATAATAT
64736562 ACATAACAGTAATAT
1 ACATAACA-TAATAT
64736577 ACATAACAT
1 ACATAACAT
64736586 GCTTTGGTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
11 4 0.06
12 10 0.15
13 24 0.36
14 4 0.06
15 24 0.36
ACGTcount: A:0.57, C:0.18, G:0.01, T:0.24
Consensus pattern (14 bp):
ACATAACATAATAT
Found at i:64736538 original size:37 final size:37
Alignment explanation
Indices: 64736497--64736585 Score: 117
Period size: 37 Copynumber: 2.4 Consensus size: 37
64736487 GTAATATACC
*
64736497 ACATAACA-AACATACATAACAATAATATACATAACAT
1 ACAT-ACATAACATACATAACAACAATATACATAACAT
*
64736534 ACATACATAACATACATAATAACAATATACATAACAGT
1 ACATACATAACATACATAACAACAATATACATAACA-T
*
64736572 AATATACATAACAT
1 -ACATACATAACAT
64736586 GCTTTGGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
36 3 0.07
37 30 0.65
38 1 0.02
39 12 0.26
ACGTcount: A:0.57, C:0.18, G:0.01, T:0.24
Consensus pattern (37 bp):
ACATACATAACATACATAACAACAATATACATAACAT
Found at i:64736735 original size:30 final size:30
Alignment explanation
Indices: 64736701--64736758 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
64736691 AAAACAAATT
*
64736701 TTGAAGTAAAATATAATACAAATAAAAAAA
1 TTGAAGTAAAATATAATACAAACAAAAAAA
* *
64736731 TTGAAGTTAGATATAATACAAACAAAAA
1 TTGAAGTAAAATATAATACAAACAAAAA
64736759 CAAAAATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.24
Consensus pattern (30 bp):
TTGAAGTAAAATATAATACAAACAAAAAAA
Found at i:64736870 original size:54 final size:56
Alignment explanation
Indices: 64736781--64736891 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 56
64736771 AATATCAAAC
* *
64736781 TAGAAAAATTTGTTTTCCCAAACTCTAAACCAGAAAACTGAATGTT-CTAAAAAAA
1 TAGAAAAATTTGTTTTCCCAAACTCTAAACCAGAAAACAGAATGTTCCCAAAAAAA
* *
64736836 TAGAAAAA-TTG-TTTCCCTAAAC-CATATACTAGAAAACAGAATGTTCCCAAAAAAA
1 TAGAAAAATTTGTTTTCCC-AAACTC-TAAACCAGAAAACAGAATGTTCCCAAAAAAA
64736891 T
1 T
64736892 TGTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
53 7 0.14
54 25 0.51
55 17 0.35
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (56 bp):
TAGAAAAATTTGTTTTCCCAAACTCTAAACCAGAAAACAGAATGTTCCCAAAAAAA
Found at i:64743221 original size:55 final size:55
Alignment explanation
Indices: 64743110--64743234 Score: 146
Period size: 55 Copynumber: 2.3 Consensus size: 55
64743100 GACATGGCCG
* * * *
64743110 TGGTCGAGCCTGCTAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAGAACCA
1 TGGTCGAACCTGTTAAAACAACACGGGAGTGCGACACGCCCGTGTGCAAGAACCA
* * * *
64743165 TGGGT-GAACCTGTTAAAACAGCACGGGAGTGTGACACGCCCGTGT-CTAGCACCCA
1 T-GGTCGAACCTGTTAAAACAACACGGGAGTGCGACACGCCCGTGTGCAAG-AACCA
64743220 TGGTCGAACCTGTTA
1 TGGTCGAACCTGTTA
64743235 GATTGACACG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
54 5 0.08
55 51 0.86
56 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.30, T:0.18
Consensus pattern (55 bp):
TGGTCGAACCTGTTAAAACAACACGGGAGTGCGACACGCCCGTGTGCAAGAACCA
Found at i:64756904 original size:20 final size:20
Alignment explanation
Indices: 64756863--64756907 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
64756853 AGCACATGTA
* *
64756863 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
64756883 TTCATCAAAATTTT-CAACTT
1 TTCAT-AAAATTTTACAACTT
64756903 TTCAT
1 TTCAT
64756908 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:64762746 original size:32 final size:32
Alignment explanation
Indices: 64762700--64762773 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
64762690 CATGTAACCG
*
64762700 AATGGTTATTAGGAGTTAAGTTGAGATAGTGA
1 AATGGTTATGAGGAGTTAAGTTGAGATAGTGA
64762732 AATGGTTATGAGGAGTTAAGTTGAGATAGTGA
1 AATGGTTATGAGGAGTTAAGTTGAGATAGTGA
64762764 AATGGTTATG
1 AATGGTTATG
64762774 TGTTCTTGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (32 bp):
AATGGTTATGAGGAGTTAAGTTGAGATAGTGA
Found at i:64762962 original size:38 final size:38
Alignment explanation
Indices: 64762920--64763110 Score: 220
Period size: 38 Copynumber: 5.0 Consensus size: 38
64762910 AGCACTCGAT
* *
64762920 ATATATCCGGGTTAAGTCTCGCATGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * *
64762958 ATATATCCGGGTTAAGTCCCTCAAGCTTCGTGCTAGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* *
64762996 ATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * * *
64763034 ACATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * * * *
64763072 TTATATCCGAGCTTAAAGTCTCGCAGGCTTTGTACTGGT
1 ATATATCCG-GGTT-AAGTCCCGCAGGCTTCGTGCTGGT
64763111 GACTGGATTC
Statistics
Matches: 132, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
38 108 0.82
39 3 0.02
40 21 0.16
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (38 bp):
ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
Found at i:64768653 original size:26 final size:26
Alignment explanation
Indices: 64768593--64768654 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
64768583 ACATTTGACA
** *
64768593 AATAATTTGGGTACTATTATTTTACT
1 AATAATTTTTGTACTATTAGTTTACT
64768619 AATAATTTTTGTACTATTAGTTTACT
1 AATAATTTTTGTACTATTAGTTTACT
*
64768645 AATATTTTTT
1 AATAATTTTT
64768655 TTTAGTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (26 bp):
AATAATTTTTGTACTATTAGTTTACT
Found at i:64777095 original size:29 final size:29
Alignment explanation
Indices: 64777061--64777156 Score: 72
Period size: 29 Copynumber: 3.2 Consensus size: 29
64777051 TTATGCTTGT
64777061 TGTGGTCGTTTGATGGATGTGTGATGAGA
1 TGTGGTCGTTTGATGGATGTGTGATGAGA
* * * * *
64777090 TGTGGT--TAAT-ATGCAAATGTGTTTATGCTTGT
1 TGTGGTCGT-TTGATG--GATGTG-TGATG--AGA
64777122 TGTGGTCGTTTGATGGATGTGTGATGAGA
1 TGTGGTCGTTTGATGGATGTGTGATGAGA
64777151 TGTGGT
1 TGTGGT
64777157 TAACATGCTA
Statistics
Matches: 48, Mismatches: 10, Indels: 18
0.63 0.13 0.24
Matches are distributed among these distances:
27 4 0.08
28 1 0.02
29 18 0.38
30 4 0.08
31 4 0.08
32 12 0.25
33 1 0.02
34 4 0.08
ACGTcount: A:0.18, C:0.04, G:0.36, T:0.42
Consensus pattern (29 bp):
TGTGGTCGTTTGATGGATGTGTGATGAGA
Found at i:64777133 original size:61 final size:61
Alignment explanation
Indices: 64777038--64777164 Score: 245
Period size: 61 Copynumber: 2.1 Consensus size: 61
64777028 ATTATGCACG
64777038 TATGCAAATGTGTTTATGCTTGTTGTGGTCGTTTGATGGATGTGTGATGAGATGTGGTTAA
1 TATGCAAATGTGTTTATGCTTGTTGTGGTCGTTTGATGGATGTGTGATGAGATGTGGTTAA
64777099 TATGCAAATGTGTTTATGCTTGTTGTGGTCGTTTGATGGATGTGTGATGAGATGTGGTTAA
1 TATGCAAATGTGTTTATGCTTGTTGTGGTCGTTTGATGGATGTGTGATGAGATGTGGTTAA
*
64777160 CATGC
1 TATGC
64777165 TAAAGATATG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.20, C:0.06, G:0.32, T:0.42
Consensus pattern (61 bp):
TATGCAAATGTGTTTATGCTTGTTGTGGTCGTTTGATGGATGTGTGATGAGATGTGGTTAA
Found at i:64777142 original size:32 final size:32
Alignment explanation
Indices: 64777045--64777143 Score: 84
Period size: 32 Copynumber: 3.2 Consensus size: 32
64777035 ACGTATGCAA
64777045 ATGTGTTTATGCTTGTTGTGGTCGTTTGATGG
1 ATGTGTTTATGCTTGTTGTGGTCGTTTGATGG
* * * * *
64777077 ATGTG-TGATG--AGATGTGGT--TAAT-ATGCAA
1 ATGTGTTTATGCTTGTTGTGGTCGT-TTGATG--G
64777106 ATGTGTTTATGCTTGTTGTGGTCGTTTGATGG
1 ATGTGTTTATGCTTGTTGTGGTCGTTTGATGG
64777138 ATGTGT
1 ATGTGT
64777144 GATGAGATGT
Statistics
Matches: 48, Mismatches: 10, Indels: 18
0.63 0.13 0.24
Matches are distributed among these distances:
27 4 0.08
28 1 0.02
29 12 0.25
30 4 0.08
31 4 0.08
32 18 0.38
33 1 0.02
34 4 0.08
ACGTcount: A:0.16, C:0.05, G:0.33, T:0.45
Consensus pattern (32 bp):
ATGTGTTTATGCTTGTTGTGGTCGTTTGATGG
Found at i:64779922 original size:46 final size:46
Alignment explanation
Indices: 64779723--64780039 Score: 197
Period size: 46 Copynumber: 6.7 Consensus size: 46
64779713 AGGGTATAAT
*
64779723 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTTC-A-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
* * * * * *
64779770 GTCGATGCCATGTCCTAGACATTGTGTTACACT-GACCCTCACTTATCCG-T
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTCA--TCT-CGAG
* * *
64779820 GTCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCAT-GTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATC-TCG-AG
* *
64779866 GCTGATGCATGTTCCAGACATGTCTTACACTAGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * * *
64779912 GCCGATGCATGTCCCAGACATGTCTTACATTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * * *
64779958 GCCGATTCCATATCCCAGAAATGGTCTTACACT-GACTCTCATAAT-GTG
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTAG-CTCTCAT-CTCGAG
*
64780006 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
64780040 ACACATATCA
Statistics
Matches: 214, Mismatches: 34, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 66 0.31
47 63 0.29
48 24 0.11
49 4 0.02
50 30 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:64785276 original size:26 final size:26
Alignment explanation
Indices: 64785246--64785296 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
64785236 AATTGTAGTT
64785246 AAATGTTA-AATATATATGCTGTTATG
1 AAATGTTAGAATATATAT-CTGTTATG
*
64785272 AAATGTTAGAATTTATATCTGTTAT
1 AAATGTTAGAATATATATCTGTTAT
64785297 AGCTGAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (26 bp):
AAATGTTAGAATATATATCTGTTATG
Found at i:64795804 original size:24 final size:24
Alignment explanation
Indices: 64795753--64795872 Score: 197
Period size: 24 Copynumber: 5.0 Consensus size: 24
64795743 ACTTTATCAT
*
64795753 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
64795778 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64795802 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64795826 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64795850 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64795873 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
24 79 0.87
25 12 0.13
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64795945 original size:9 final size:9
Alignment explanation
Indices: 64795931--64796003 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
64795921 ACATCATGTG
64795931 CATATCATA
1 CATATCATA
*
64795940 CATATCATGTG
1 CATATCA--TA
64795951 CATATCATA
1 CATATCATA
*
64795960 CATATCATGTG
1 CATATCA--TA
64795971 CATATCATA
1 CATATCATA
* *
64795980 CATGTCATGTG
1 CATATCA--TA
64795991 CATATCATA
1 CATATCATA
64796000 CATA
1 CATA
64796004 CCATGTTTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:64795948 original size:20 final size:20
Alignment explanation
Indices: 64795923--64796009 Score: 156
Period size: 20 Copynumber: 4.3 Consensus size: 20
64795913 TTATGAATAC
64795923 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
64795943 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
64795963 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64795983 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64796003 ACCATGT
1 ATCATGT
64796010 TTATCAGAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:64795954 original size:11 final size:11
Alignment explanation
Indices: 64795923--64795998 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
64795913 TTATGAATAC
64795923 ATCATGTGCAT
1 ATCATGTGCAT
*
64795934 ATCA--TACAT
1 ATCATGTGCAT
64795943 ATCATGTGCAT
1 ATCATGTGCAT
*
64795954 ATCA--TACAT
1 ATCATGTGCAT
64795963 ATCATGTGCAT
1 ATCATGTGCAT
*
64795974 ATCA--TACAT
1 ATCATGTGCAT
*
64795983 GTCATGTGCAT
1 ATCATGTGCAT
64795994 ATCAT
1 ATCAT
64795999 ACATACCATG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:64798984 original size:79 final size:80
Alignment explanation
Indices: 64798848--64799032 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
64798838 TTGAATGATG
* * *
64798848 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCCAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
64798913 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
64798928 TCCGGGCCAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCCAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
64798990 TTGTGCGAGTTACT-AT
64 TTGTGCGAGATACTAAT
* * *
64799006 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCCAAGTCCCGAAGGC-TTTG
64799033 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.62
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCCAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAAT
Found at i:64799039 original size:40 final size:40
Alignment explanation
Indices: 64798848--64799032 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
64798838 TTGAATGATG
* * * *
64798848 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
64798888 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64798928 TCCGGGCCAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64798967 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
64799008 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64799033 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64799054 original size:79 final size:79
Alignment explanation
Indices: 64798901--64799055 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
64798891 GGACTAAGAT
* * **
64798901 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCCAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCCAAGCCCGAAGGCATTTGAACGAGTTACTAA
64798966 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
64798980 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCCAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
64799043 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
64799056 ATTCCAAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCCAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:64805810 original size:39 final size:39
Alignment explanation
Indices: 64805732--64805939 Score: 262
Period size: 40 Copynumber: 5.3 Consensus size: 39
64805722 TCTTCGGAAT
* *
64805732 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATA-AATCACTAGCACAAATGCCTTCGGGTC
* *
64805771 TTAGCCCGGATATATCAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATAAATC-ACTAGCACAAATGCCTTCGGGTC
*
64805810 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-AAATCACTAGCACAAATGCCTTCGGGTC
* *
64805850 TTAACCCGG-TAAATCAACTCGCAC-AATGCCTTCGGGTC
1 TTAGCCCGGATAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
64805888 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-AAATCACTAGCACAAATGCCTTCGGGTC
64805928 TTAGCCCGGATA
1 TTAGCCCGGATA
64805940 TCATTCAAAT
Statistics
Matches: 147, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 26 0.18
39 54 0.37
40 67 0.46
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:64805891 original size:78 final size:79
Alignment explanation
Indices: 64805732--64805939 Score: 323
Period size: 78 Copynumber: 2.7 Consensus size: 79
64805722 TCTTCGGAAT
* * * * *
64805732 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAATCAACTCGCAC
64805796 AAATGCCTTCGGTC
66 AAATGCCTTCGGTC
*
64805810 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG-TAAATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAATCAACTCGCAC
64805874 -AATGCCTTCGGGTC
66 AAATGCCTTC-GGTC
*
64805888 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATA
64805940 TCATTCAAAT
Statistics
Matches: 119, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 9 0.08
78 69 0.58
79 41 0.34
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAATCAACTCGCAC
AAATGCCTTCGGTC
Found at i:64813871 original size:40 final size:40
Alignment explanation
Indices: 64813807--64814016 Score: 300
Period size: 40 Copynumber: 5.3 Consensus size: 40
64813797 TCTTCGGAAT
* * * *
64813807 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
* * *
64813846 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTC
64813885 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
* *
64813925 TTAACCCGGATAAAATCACTCGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
*
64813965 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
64814005 TTAGCCCGGATA
1 TTAGCCCGGATA
64814017 TCATTCAAAT
Statistics
Matches: 154, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 37 0.24
40 117 0.76
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
Found at i:64814002 original size:80 final size:80
Alignment explanation
Indices: 64813807--64814016 Score: 318
Period size: 79 Copynumber: 2.6 Consensus size: 80
64813797 TCTTCGGAAT
* * * * *
64813807 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCAACTCGCA
64813870 CAAATGCCTTCGGTC
66 CAAATGCCTTCGGTC
*
64813885 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAAAATC-ACTCGCA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCAACTCGCA
*
64813949 CAATTGCCTTCGGGTC
66 CAAATGCCTTC-GGTC
*
64813965 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATA
64814017 TCATTCAAAT
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
78 4 0.03
79 58 0.48
80 58 0.48
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCAACTCGCA
CAAATGCCTTCGGTC
Found at i:64819245 original size:46 final size:46
Alignment explanation
Indices: 64819118--64819328 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 46
64819108 AAGTCAATTC
* * * *
64819118 CATGTCCCAGACATGGTCTTACACTAACACATCATGT--A-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCAAGGCTGATG
** * * *
64819163 CATGTTTCAGACATGTTTTACACTGGCT-TACATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCTGATG
* * * *
64819209 CTTGTCCCAGACATGTCTTACACTATCTCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTGATG
* * * **
64819255 CCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAAGGCTGATG
64819303 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
64819329 TACACATATT
Statistics
Matches: 131, Mismatches: 27, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 10 0.08
45 13 0.10
46 53 0.40
47 26 0.20
48 23 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTGATG
Found at i:64820484 original size:34 final size:34
Alignment explanation
Indices: 64820438--64820502 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
64820428 AGATGCAGTT
* * *
64820438 TGGGCCTGAGCCCGTTACAGTATTAGTATCAATG
1 TGGGCCTGAGCCCATTACAATAATAGTATCAATG
*
64820472 TGGGCCTTAGCCCATTACAATAATAGTATCA
1 TGGGCCTGAGCCCATTACAATAATAGTATCA
64820503 GTGCAGTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (34 bp):
TGGGCCTGAGCCCATTACAATAATAGTATCAATG
Found at i:64820987 original size:27 final size:27
Alignment explanation
Indices: 64820902--64820987 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
64820892 GGGCAAATTA
*
64820902 GTCATTTTACCTTATAGGGGTTTTTTG
1 GTCATTTTACCTTATAGGGGTATTTTG
* *
64820929 GCCATTTTAACTTATAGGGGTATTTTG
1 GTCATTTTACCTTATAGGGGTATTTTG
* * * *
64820956 ATCATTTTACCCTCTAGAGGTATTTTG
1 GTCATTTTACCTTATAGGGGTATTTTG
64820983 GTCAT
1 GTCAT
64820988 CATTTCGACC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.47
Consensus pattern (27 bp):
GTCATTTTACCTTATAGGGGTATTTTG
Found at i:64829892 original size:30 final size:27
Alignment explanation
Indices: 64829856--64829990 Score: 99
Period size: 30 Copynumber: 4.6 Consensus size: 27
64829846 TTTGGCTATC
64829856 AATTATGAAAAGGGATGGTGATATCCATTA
1 AATTATGAAAAGGGAT-G-GAT-TCCATTA
* ***
64829886 AATTATGAAAAGGGATGGCTTCGGCTA
1 AATTATGAAAAGGGATGGATTCCATTA
* * *
64829913 TGATCTATGAAAAGGGATGGCTTCGGCTATCA
1 -AAT-TATGAAAAGGGATGGATTC--C-ATTA
*
64829945 AATTATGAAAAGGGATGGTGATGACCATTA
1 AATTATGAAAAGGGAT-G-GAT-TCCATTA
64829975 AATTATGAAAAGGGAT
1 AATTATGAAAAGGGAT
64829991 AGCTTCGGCT
Statistics
Matches: 84, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.05
28 4 0.05
29 20 0.24
30 48 0.57
31 4 0.05
32 3 0.04
33 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.27
Consensus pattern (27 bp):
AATTATGAAAAGGGATGGATTCCATTA
Found at i:64829981 original size:89 final size:88
Alignment explanation
Indices: 64829831--64830047 Score: 283
Period size: 89 Copynumber: 2.4 Consensus size: 88
64829821 TCATCAACCA
* *
64829831 ATGAAAAGGGATAGTTTTGGCTATCAATTATGAAAAGGGATGGTGATATCCATTAAATTATGAAA
1 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATATCCATTAAATTATGAAA
*
64829896 AGGGATGGCTTCGGCTATGATCT
66 AGGGATAGCTTCGGCTATGATCT
*
64829919 ATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGATGGTGATGA-CCATTAAATTATGA
1 ATGAAAAGGGATAGCTTCGGCTATC-AATTATGAAAAGGGATGGTGAT-ATCCATTAAATTATGA
* * *
64829983 AAAGGGATAGCTTCGGCTATCAAACC
64 AAAGGGATAGCTTCGGCTAT-GATCT
* * ** *
64830009 ATGAAAAGAGATAACTTCGATTATCGAATTACGAAAAGG
1 ATGAAAAGGGATAGCTTCGGCTATC-AATTATGAAAAGG
64830048 AATGTGTCAA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
88 22 0.20
89 55 0.49
90 35 0.31
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (88 bp):
ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATATCCATTAAATTATGAAA
AGGGATAGCTTCGGCTATGATCT
Found at i:64830013 original size:30 final size:30
Alignment explanation
Indices: 64829889--64830027 Score: 122
Period size: 30 Copynumber: 4.7 Consensus size: 30
64829879 TCCATTAAAT
* * *
64829889 TATGAAAAGGGATGGCTTCGGCTAT-GATC
1 TATGAAAAGGGATAGCTTCGGCTATCAAAC
* *
64829918 TATGAAAAGGGATGGCTTCGGCTATCAAAT
1 TATGAAAAGGGATAGCTTCGGCTATCAAAC
* * * * *
64829948 TATGAAAAGGGAT-GGTGAT-GACCATTAAAT
1 TATGAAAAGGGATAGCT--TCGGCTATCAAAC
64829978 TATGAAAAGGGATAGCTTCGGCTATCAAAC
1 TATGAAAAGGGATAGCTTCGGCTATCAAAC
* * *
64830008 CATGAAAAGAGATAACTTCG
1 TATGAAAAGGGATAGCTTCG
64830028 ATTATCGAAT
Statistics
Matches: 90, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
29 28 0.31
30 59 0.66
31 3 0.03
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (30 bp):
TATGAAAAGGGATAGCTTCGGCTATCAAAC
Found at i:64834228 original size:65 final size:65
Alignment explanation
Indices: 64834100--64834238 Score: 158
Period size: 65 Copynumber: 2.1 Consensus size: 65
64834090 CAGGGCACTT
* * * * *
64834100 ACAAAGAGCTGCGTTTGTGTCTGCAACATATGTTGGATCACAACCAATTGCATAACAAGACGCTC
1 ACAAAGAGCCGCATTTGTGTCTGCAACATATGTAGAATCACAACCAAATGCATAACAAGACGCTC
* *
64834165 ACATAGAGCCGCATTTGTGTTTGCAACATATGTAGAATCACAA-CAAAT-CAATAA-ATAGAACG
1 ACAAAGAGCCGCATTTGTGTCTGCAACATATGTAGAATCACAACCAAATGC-ATAACA-AG-ACG
*
64834227 CTT
63 CTC
64834230 ACAAAGAGC
1 ACAAAGAGC
64834239 TGCGGTAATG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
63 2 0.03
64 10 0.16
65 50 0.81
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (65 bp):
ACAAAGAGCCGCATTTGTGTCTGCAACATATGTAGAATCACAACCAAATGCATAACAAGACGCTC
Found at i:64837226 original size:24 final size:25
Alignment explanation
Indices: 64837199--64837250 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
64837189 GCCTAGCCTC
64837199 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
** *
64837223 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
64837248 TTT
1 TTT
64837251 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:64837590 original size:27 final size:27
Alignment explanation
Indices: 64837456--64837596 Score: 178
Period size: 27 Copynumber: 5.2 Consensus size: 27
64837446 GGGCAAAATG
* * * * *
64837456 GTAATTTTACCCCATAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
64837483 GTAATTCTACCCTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
64837510 GTAATTTTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
64837536 GATAATTCTACCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
64837564 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
64837591 ATAATT
1 GTAATT
64837597 TTGTAAATCG
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
26 3 0.03
27 95 0.94
28 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:64837620 original size:81 final size:81
Alignment explanation
Indices: 64837457--64837625 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
64837447 GGCAAAATGG
* * * * **
64837457 TAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCAGTAATTTTACCC
1 TAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCAATAATTTTACAA
***
64837522 TACAAGGGTATTTCGA
66 TACAAGGGTAAAACGA
* * *
64837538 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTTTGTA-
1 TAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCAATAA-TTT-TAC
*
64837602 AAT-CGAGGGTAAAACGA
64 AATACAAGGGTAAAACGA
64837619 TAATTCT
1 TAATTCT
64837626 GTAAATCCGG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
81 67 0.92
82 4 0.05
83 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (81 bp):
TAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCAATAATTTTACAA
TACAAGGGTAAAACGA
Found at i:64837689 original size:27 final size:27
Alignment explanation
Indices: 64837635--64837922 Score: 258
Period size: 27 Copynumber: 10.6 Consensus size: 27
64837625 TGTAAATCCG
* * *
64837635 GGGTACTTTGGTAATCTTTACAAGTCGA
1 GGGTATTTTAGTAAT-TTTACAAATCGA
*
64837663 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTAGTAATTTTACAAATCGA
* *
64837690 GGGTATTTCAATAATTTTACAAA-CTGA
1 GGGTATTTTAGTAATTTTACAAATC-GA
* * *
64837717 GGGTATTTCAGTAATTTCACAAATCAA
1 GGGTATTTTAGTAATTTTACAAATCGA
* *
64837744 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTAGTAATTTTACAAATCGA
* * ** * *
64837770 GAGGTACTTTGGTAATTTTGTAAACCAA
1 G-GGTATTTTAGTAATTTTACAAATCGA
* * **
64837798 GGGTATTTTGGTAGTTTTACTGATCGA
1 GGGTATTTTAGTAATTTTACAAATCGA
* ** *
64837825 GGGTATTTTGGTAATTTTGTAAATCAA
1 GGGTATTTTAGTAATTTTACAAATCGA
* *
64837852 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTAGTAATTTTACAAATCGA
*
64837878 GGGGTATTTTAGTAATTTTACAAATTGA
1 -GGGTATTTTAGTAATTTTACAAATCGA
*
64837906 GGGCATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
64837923 GGTAAACTAA
Statistics
Matches: 217, Mismatches: 37, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.03
27 194 0.89
28 17 0.08
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAATCGA
Found at i:64841526 original size:119 final size:120
Alignment explanation
Indices: 64841344--64841566 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
64841334 TCCTCGTTCA
*
64841344 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
64841409 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
64841464 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
64841526 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
64841567 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:64841566 original size:40 final size:40
Alignment explanation
Indices: 64841342--64841566 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
64841332 GCTCCTCGTT
* *
64841342 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64841382 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64841422 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64841462 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
64841501 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64841542 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64841567 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64849446 original size:79 final size:82
Alignment explanation
Indices: 64849335--64849519 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
64849325 GCTCCTCGTT
* *
64849335 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
64849398 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
64849415 CAAATGCCTTCGGGACTTA-CCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
64849478 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
64849495 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64849520 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.61
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:64849519 original size:40 final size:40
Alignment explanation
Indices: 64849335--64849519 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
64849325 GCTCCTCGTT
* *
64849335 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64849375 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
64849415 CAAATGCCTTCGGGACTTA-CCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
64849454 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64849495 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64849520 CATCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 3 0.02
39 32 0.25
40 80 0.63
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64859343 original size:15 final size:14
Alignment explanation
Indices: 64859303--64859355 Score: 72
Period size: 14 Copynumber: 3.7 Consensus size: 14
64859293 CAAGGAAACC
64859303 GAATAAGAAATCCA
1 GAATAAGAAATCCA
*
64859317 GGAT-AGAGAATCCA
1 GAATAAGA-AATCCA
64859331 GAATAAAGAAATCCA
1 GAAT-AAGAAATCCA
64859346 GAATAAGAAA
1 GAATAAGAAA
64859356 CCCAAGAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 3 0.09
14 18 0.53
15 10 0.29
16 3 0.09
ACGTcount: A:0.57, C:0.11, G:0.19, T:0.13
Consensus pattern (14 bp):
GAATAAGAAATCCA
Found at i:64861656 original size:55 final size:54
Alignment explanation
Indices: 64861503--64861681 Score: 200
Period size: 55 Copynumber: 3.3 Consensus size: 54
64861493 TAAATTGTAC
* **
64861503 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* * * *
64861556 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGGCGAGTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGT-GCGAGTTGAATATGT
* * *
64861612 AGCAC-ACAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTA-AGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* *
64861667 AGCACTGAGGGTGCG
1 AGCACTAAGTGTGCG
64861682 GACTTAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
53 1 0.01
54 35 0.33
55 49 0.47
56 20 0.19
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
Found at i:64861671 original size:27 final size:27
Alignment explanation
Indices: 64861503--64861681 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
64861493 TAAATTGTAC
*
64861503 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* ** *
64861530 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
64861556 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGACTATGT
*
64861584 GGCACTAAGTGTGGCGAGTTGACTATGT
1 AGCACTAAGTGT-GCGAGTTGACTATGT
*
64861612 AGCAC-ACAGTGTGCGAGTTTGATTATGT
1 AGCACTA-AGTGTGCGAG-TTGACTATGT
* * *
64861640 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
64861667 AGCACTGAGGGTGCG
1 AGCACTAAGTGTGCG
64861682 GACTTAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
27 82 0.65
28 44 0.35
29 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:64869840 original size:27 final size:27
Alignment explanation
Indices: 64869809--64869986 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
64869799 TAAATTGTAC
*
64869809 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
64869836 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64869862 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
64869890 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64869917 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
64869945 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64869972 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64869987 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64869870 original size:54 final size:55
Alignment explanation
Indices: 64869809--64869986 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
64869799 TAAATTGTAC
* **
64869809 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
64869864 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
64869917 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
64869972 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64869987 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:64874219 original size:46 final size:46
Alignment explanation
Indices: 64874053--64874228 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
64874043 TGTAACCCGC
* * *
64874053 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * * * * *
64874099 CCATGAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
64874149 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
64874192 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
64874229 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:64874228 original size:93 final size:93
Alignment explanation
Indices: 64874060--64874231 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
64874050 CGCCCATAAG
* * *
64874060 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
64874125 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
64874153 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64874218 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
64874232 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:64879483 original size:42 final size:44
Alignment explanation
Indices: 64879402--64879504 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 44
64879392 TCTCAGACGC
* *
64879402 GGTCTTACATGTAAA-CAAATATCGATGCCACTATCCCAGACAG
1 GGTCTTACACGTAAATCAAATATCGATGCCACTACCCCAGACAG
* *
64879445 GGTCTTACACG-AAATCAAATA-CGATGCCGA-TGCCCCAGACAT
1 GGTCTTACACGTAAATCAAATATCGATGCC-ACTACCCCAGACAG
64879487 GGTCTTACACGTAAATCA
1 GGTCTTACACGTAAATCA
64879505 TAAGTCGACG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
42 30 0.57
43 23 0.43
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (44 bp):
GGTCTTACACGTAAATCAAATATCGATGCCACTACCCCAGACAG
Found at i:64885883 original size:55 final size:54
Alignment explanation
Indices: 64885775--64886029 Score: 222
Period size: 55 Copynumber: 4.8 Consensus size: 54
64885765 ATTAGGGTTT
* * *
64885775 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATG-GAATTGGTAA-GTTCTATAAGGC
* * **
64885830 AAGGGTACCATGTAAGACCATGTCAAGACATGGAATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT-CTATAAGGC
* * * * *
64885885 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGA
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTCTATAAGGC
* * *
64885938 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTCTATAAGGC
* * * * *
64885987 AAGGATACCACGTAATACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAG
64886030 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
48 2 0.01
49 35 0.21
52 6 0.04
53 41 0.25
54 9 0.05
55 69 0.42
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTCTATAAGGC
Found at i:64888015 original size:27 final size:27
Alignment explanation
Indices: 64887980--64888061 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
64887970 GGTCGTTATC
*
64887980 TGACTGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
64888007 TGACCGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
64888034 TGACCATGATACCCCTGTATGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
64888061 T
1 T
64888062 TACGAGTAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:64888449 original size:33 final size:33
Alignment explanation
Indices: 64888411--64888486 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
64888401 ATTGCGTTAC
* *
64888411 ACTGTACTGTTACTGTATAGGGCTAAGGCCGAG
1 ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
*
64888444 ACTGTACTGTTACTGAATAGGGCTCAGGCCCAG
1 ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
64888477 ACTGTTACTG
1 ACTG-TACTG
64888487 CATGCACTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 34 0.87
34 5 0.13
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (33 bp):
ACTGTACTGTTACTGAATAGGGCTAAGGCCCAG
Found at i:64892886 original size:56 final size:56
Alignment explanation
Indices: 64892826--64892960 Score: 234
Period size: 56 Copynumber: 2.4 Consensus size: 56
64892816 CCAGACAGGG
*
64892826 TCTTACTTGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGTGA
1 TCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGTGA
* * *
64892882 TCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAATGTATAAAACGTGG
1 TCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGTGA
64892938 TCTTACTCGCACACATATATCGG
1 TCTTACTCGCACACATATATCGG
64892961 TGCCATGGCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGTGA
Found at i:64898622 original size:14 final size:13
Alignment explanation
Indices: 64898599--64898630 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
64898589 GGGATATCAA
64898599 AACAATAATTAAG
1 AACAATAATTAAG
64898612 AACACATAATTAAG
1 AACA-ATAATTAAG
64898626 AACAA
1 AACAA
64898631 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:64903805 original size:22 final size:22
Alignment explanation
Indices: 64903775--64903835 Score: 113
Period size: 22 Copynumber: 2.8 Consensus size: 22
64903765 CCCCATAGGT
*
64903775 AGTGTAGGGTTGGATGGAGGCA
1 AGTGCAGGGTTGGATGGAGGCA
64903797 AGTGCAGGGTTGGATGGAGGCA
1 AGTGCAGGGTTGGATGGAGGCA
64903819 AGTGCAGGGTTGGATGG
1 AGTGCAGGGTTGGATGG
64903836 GATAGCATGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.21, C:0.07, G:0.51, T:0.21
Consensus pattern (22 bp):
AGTGCAGGGTTGGATGGAGGCA
Found at i:64910025 original size:122 final size:122
Alignment explanation
Indices: 64909806--64910025 Score: 368
Period size: 122 Copynumber: 1.8 Consensus size: 122
64909796 TGCTCATTAT
* * *
64909806 TCTATCATTTAATTTGTATTCTTAGGTTAGTTATCATACATTTCATGTTAAATCAAGTTCTTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTCCATGTTAAATCAAGTTATTAGG
* *
64909871 AAAACCTCATACCCATGACATTACTATGCTCATTCTCATGCTATTACCATGCCAATG
66 AAAACCCCATACCCATAACATTACTATGCTCATTCTCATGCTATTACCATGCCAATG
* *
64909928 TCTATCATTTAATTTGCATTCTTAGGTTTGTTATCATACATTCCATGTTAAATCGAGTTATTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTCCATGTTAAATCAAGTTATTAGG
*
64909993 AAAACCCCATACCCATAACATTACTATTCTCAT
66 AAAACCCCATACCCATAACATTACTATGCTCAT
64910026 GGTTCTTTTG
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
122 90 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (122 bp):
TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTCCATGTTAAATCAAGTTATTAGG
AAAACCCCATACCCATAACATTACTATGCTCATTCTCATGCTATTACCATGCCAATG
Found at i:64911767 original size:23 final size:23
Alignment explanation
Indices: 64911737--64911785 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
64911727 ACACAGGAAG
64911737 TTTCACTTCTCTCCCTATCTTAT
1 TTTCACTTCTCTCCCTATCTTAT
64911760 TTTCACTTCTCTCCCTATCTTAT
1 TTTCACTTCTCTCCCTATCTTAT
64911783 TTT
1 TTT
64911786 TATACTCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTCACTTCTCTCCCTATCTTAT
Found at i:64916653 original size:47 final size:47
Alignment explanation
Indices: 64916441--64917361 Score: 1227
Period size: 47 Copynumber: 19.2 Consensus size: 47
64916431 AGAGAGTATG
64916441 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATA
*
64916490 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATA
*
64916541 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG----TGTATATA
* *
64916592 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* *
64916639 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGT-T-TATG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
64916684 TGTGATAAGGCCTAATAGCCGAGGTGATGAATGTGAAAGTGTATGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATA
*
64916735 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATA
* *
64916786 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
64916833 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* *
64916880 TGTAATAAGGCCTAATTGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
** * * * * *
64916927 TAAGATAAGGCTTAATGGCCGATGCGATGAATGTGAAAGTGTATTTG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* *
64916974 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
64917021 TGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
64917068 TGT-ATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTATATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
64917114 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG----TGTATATA
*
64917165 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* *
64917212 TGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
64917259 TGTGATAAGGCCTAATGGCCGATGTAATAAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * * * * *
64917306 TGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
64917353 TGTGATAAG
1 TGTGATAAG
64917362 TCCCGAAAGG
Statistics
Matches: 797, Mismatches: 58, Indels: 36
0.89 0.07 0.04
Matches are distributed among these distances:
45 41 0.05
46 44 0.06
47 443 0.56
49 40 0.05
50 1 0.00
51 224 0.28
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:64917533 original size:37 final size:37
Alignment explanation
Indices: 64917477--64917555 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64917467 CCGAGCTCTA
* * *
64917477 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGAT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
* *
64917514 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
64917551 AAGAC
1 AAGAC
64917556 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
Found at i:64919516 original size:43 final size:43
Alignment explanation
Indices: 64919468--64919564 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
64919458 TTGGTTTTCA
64919468 GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
*
64919511 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
64919554 GCACTAAGTGT
1 GCACTAAGTGT
64919565 TCACGGTTGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.25, C:0.13, G:0.34, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
Found at i:64919561 original size:28 final size:28
Alignment explanation
Indices: 64919525--64919592 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
64919515 TAAGTGTGCG
*
64919525 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTTCACGGTTGTGAGATT
64919553 GGCACTAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTTCACGGTTGTGAGATT
64919581 GGCACTAAGTGT
1 GGCACTAAGTGT
64919593 GCGGGCAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTTCACGGTTGTGAGATT
Found at i:64919575 original size:71 final size:71
Alignment explanation
Indices: 64919487--64919635 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
64919477 GTGCGGGAAA
64919487 TAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
1 TAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
64919552 TGGCAC
66 TGGCAC
64919558 TAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
1 TAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
64919623 TGGCAC
66 TGGCAC
64919629 TAAGTGT
1 TAAGTGT
64919636 GCGGGCTTGA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (71 bp):
TAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
TGGCAC
Found at i:64919605 original size:43 final size:43
Alignment explanation
Indices: 64919553--64919641 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
64919543 TTGTGAGATT
*
64919553 GGCACTAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
64919596 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
64919639 GGC
1 GGC
64919642 TTGAAATGCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.27
Consensus pattern (43 bp):
GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
Found at i:64919658 original size:29 final size:29
Alignment explanation
Indices: 64919623--64919696 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
64919613 GTTGTGAGAT
* *
64919623 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
64919652 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
64919681 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64919697 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:64920137 original size:40 final size:40
Alignment explanation
Indices: 64920090--64920326 Score: 339
Period size: 40 Copynumber: 5.9 Consensus size: 40
64920080 GAGTTACTAA
64920090 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
64920130 ATTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
64920170 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
64920210 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * *
64920250 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
64920290 GTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
64920327 CGTGTATTCG
Statistics
Matches: 178, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:64920149 original size:80 final size:80
Alignment explanation
Indices: 64920011--64920313 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 80
64920001 TTGAATGATG
** ** * * *
64920011 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGACGCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTCCCGAAGAGCA
* * * *
64920073 TTGGTGCGAGTTACTAAA
64 TTCGTGCTAGTGA-TATA
*
64920091 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
* *
64920156 CATGCTAGTGATGTA
66 CGTGCTAGTGATATA
*
64920171 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
64920236 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * * *
64920251 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
64920314 ATCATGCTGG
Statistics
Matches: 192, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 167 0.87
81 19 0.10
82 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:64920162 original size:23 final size:23
Alignment explanation
Indices: 64920096--64920162 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
64920086 CTAAATCCGG
64920096 GCTAAGTCCCGAAGAGCATTCAT
1 GCTAAGTCCCGAAGAGCATTCAT
* * **
64920119 GCT-AGT---G-A-TGTATTCGG
1 GCTAAGTCCCGAAGAGCATTCAT
64920136 GCTAAGTCCCGAAGAGCATTCAT
1 GCTAAGTCCCGAAGAGCATTCAT
64920159 GCTA
1 GCTA
64920163 GTGATGTATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
19 1 0.03
21 1 0.03
22 4 0.13
23 12 0.40
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCAT
Found at i:64923745 original size:47 final size:47
Alignment explanation
Indices: 64923529--64924449 Score: 1249
Period size: 47 Copynumber: 19.3 Consensus size: 47
64923519 CAAGAGAGTG
64923529 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
64923576 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTA
1 --TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTA
*
64923629 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG----TGTA
*
64923680 TATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64923727 TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGT-T-
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64923772 TATGTGTGATAAGGCCTAATAGCCGAGGTGATGAATGTGAAAGTGTATGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTA
*
64923823 TATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTA
*
64923874 TATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64923921 TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64923968 TATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
** * *
64924015 TATATAAGATAA-GCCTTAATGGCCGATGCGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCC-TAATAGCCGATGTGATGAATGTGAAAGTGTA
* * *
64924062 TTTGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64924109 TATGTGTGATAAGGCCTAATAGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATA-GCCGATGTGATGAATGTGAAAGTGTA
* * * *
64924157 TATATGTAATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
64924204 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64924251 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
64924298 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
64924345 TATATGTGATAAGGCCTAATGGCCGATGT-ATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * * * *
64924391 TATATGTGACAGGGCCGAGTGGCCAACGT-ATGGATGTGAAAGTGCA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
64924437 TAAATGTGATAAG
1 TATATGTGATAAG
64924450 TCCCGAAAGG
Statistics
Matches: 807, Mismatches: 50, Indels: 33
0.91 0.06 0.04
Matches are distributed among these distances:
45 41 0.05
46 69 0.09
47 421 0.52
48 47 0.06
49 44 0.05
50 1 0.00
51 180 0.22
53 4 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
Found at i:64924200 original size:236 final size:239
Alignment explanation
Indices: 64923529--64924449 Score: 1292
Period size: 236 Copynumber: 3.9 Consensus size: 239
64923519 CAAGAGAGTG
* *
64923529 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
64923594 TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 TAATAGCCGATGTGATGAATGTGAAAG-G-ATGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
64923659 ATGAATGTGAAAGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
129 ATGAATGTGAAAG----TGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGT
* * *
64923724 GTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGT-T-
190 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * *
64923772 TATGTGTGATAAGGCCTAATAGCCGAGGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGG
1 TATATGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTA--TATATATGTGATAAGG
* *
64923837 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTAATAGCCGATG
64 CCTAATAGCCGATGTGATGAATGTGAAAG-G-ATGTATATATGTGATAAGGCCTAATGGCCGATG
* *
64923902 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGT
127 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGT
*
64923967 ATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
192 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
** * *
64924015 TATATAAGATAA-GCCTTAATGGCCGATGCGATGAATGTGAAAGTGTAT-T-TGTGTGATAAGGC
1 TATATGTGATAAGGCC-TAATAGCCGATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* * *
64924077 CTAATAGCCGACGTGATGAATGTGAAA-G-TGTATATGTGTGATAAGGCCTAATAGGCCGACGTG
65 CTAATAGCCGATGTGATGAATGTGAAAGGATGTATATATGTGATAAGGCCTAAT-GGCCGATGTG
* * *
64924140 ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTATAT
129 ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTAT
64924205 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
194 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
64924251 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
64924314 TAATGGCCGATGCGATGAATGTGAAA-G-TGTATATATGTGATAAGGCCTAATGGCCGATGT-AT
66 TAATAGCCGATGTGATGAATGTGAAAGGATGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * * * * * *
64924376 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGT-ATGGATGTGAAAGTGCATAA
131 GAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATAT
64924440 ATGTGATAAG
196 ATGTGATAAG
64924450 TCCCGAAAGG
Statistics
Matches: 617, Mismatches: 52, Indels: 28
0.89 0.07 0.04
Matches are distributed among these distances:
233 26 0.04
234 40 0.06
235 31 0.05
236 212 0.34
237 4 0.01
239 37 0.06
240 1 0.00
241 89 0.14
242 4 0.01
243 82 0.13
245 91 0.15
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (239 bp):
TATATGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGGATGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:64924622 original size:36 final size:37
Alignment explanation
Indices: 64924567--64924644 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
64924557 CCGAGCTCTA
* *
64924567 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64924603 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64924640 AAGAC
1 AAGAC
64924645 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64932109 original size:22 final size:22
Alignment explanation
Indices: 64932084--64932134 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
64932074 CCAACCTAAA
64932084 TATGGCTCTGTGATATATTGAT
1 TATGGCTCTGTGATATATTGAT
* * *
64932106 TATGGTTCTGTGCTATGTTGAT
1 TATGGCTCTGTGATATATTGAT
64932128 TATGGCT
1 TATGGCT
64932135 TTGTCCAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.18, C:0.10, G:0.25, T:0.47
Consensus pattern (22 bp):
TATGGCTCTGTGATATATTGAT
Found at i:64934560 original size:22 final size:21
Alignment explanation
Indices: 64934526--64934568 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
64934516 TATTCCCCGC
*
64934526 AGGTAGTGTAGGGTTGGATGG
1 AGGTAGTGCAGGGTTGGATGG
64934547 AGGTAAGTGCAGGGTTGGATGG
1 AGGT-AGTGCAGGGTTGGATGG
64934569 GTTATCATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.21, C:0.02, G:0.51, T:0.26
Consensus pattern (21 bp):
AGGTAGTGCAGGGTTGGATGG
Found at i:64934646 original size:32 final size:32
Alignment explanation
Indices: 64934595--64934683 Score: 160
Period size: 32 Copynumber: 2.8 Consensus size: 32
64934585 CATATGGGTT
* *
64934595 TGATATTGAAATGGGCTAGGCCCAACTAATAC
1 TGATTTTGAGATGGGCTAGGCCCAACTAATAC
64934627 TGATTTTGAGATGGGCTAGGCCCAACTAATAC
1 TGATTTTGAGATGGGCTAGGCCCAACTAATAC
64934659 TGATTTTGAGATGGGCTAGGCCCAA
1 TGATTTTGAGATGGGCTAGGCCCAA
64934684 TTGAGACTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (32 bp):
TGATTTTGAGATGGGCTAGGCCCAACTAATAC
Found at i:64936471 original size:18 final size:20
Alignment explanation
Indices: 64936435--64936480 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
64936425 AGTTGTAAGT
64936435 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
64936455 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
64936474 AT-TATAT
1 ATATATAT
64936481 AACATGTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 18 0.78
20 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:64936960 original size:50 final size:50
Alignment explanation
Indices: 64936834--64937278 Score: 389
Period size: 50 Copynumber: 8.8 Consensus size: 50
64936824 ATTGTGAGAA
* * *
64936834 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* *
64936886 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *** * * *
64936936 CGCATGTGTAGCACTAAATGCAGGCTAATATACGTACTC-GATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGT
* * * * *
64936987 CACGTGTGTAGTACTTAGTGCAGGCTGCTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
64937037 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * * *
64937087 CGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACC-TATTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * *
64937138 CACGA-GTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATCA-GT
1 CAC-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * *
64937188 CACGTGTGTAGTACTAAGGGCAGGCTACTATGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
64937238 CGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
64937279 GAGCTTCGGT
Statistics
Matches: 310, Mismatches: 71, Indels: 26
0.76 0.17 0.06
Matches are distributed among these distances:
48 3 0.01
49 7 0.02
50 198 0.64
51 69 0.22
52 33 0.11
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:64937147 original size:101 final size:101
Alignment explanation
Indices: 64937042--64937225 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 101
64937032 TAGGTCACAT
* * *
64937042 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGGTCGCATGTGTAGTACTAAGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATCA-GTCACATGTGTAGTACTAAGG
*
64937106 GCAGGCTATTATGCGTACCTATTAACTTCGATCACGA
65 GCAGGCTACTATGCGTACCTATTAACTTCGATCACGA
* * *
64937143 GTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATCAGTCACGTGTGTAGTACTAAGGG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATCAGTCACATGTGTAGTACTAAGGG
*
64937208 CAGGCTACTATGTGTACC
66 CAGGCTACTATGCGTACC
64937226 AGATTGATAG
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 73 0.99
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (101 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATCAGTCACATGTGTAGTACTAAGGG
CAGGCTACTATGCGTACCTATTAACTTCGATCACGA
Found at i:64937163 original size:151 final size:151
Alignment explanation
Indices: 64936839--64937275 Score: 599
Period size: 151 Copynumber: 2.9 Consensus size: 151
64936829 GAGAACACAT
* * * * * **
64936839 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACTAAG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGATTAGGTCACGTGTGTAGTACTAAG
* * * * *
64936904 TACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGCACTAAATGCAGGCTAATATAC
65 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAATATGC
** *
64936969 GTACTCGATAGTTTCGATCACGT
130 GTAC-CGATAACTTCGATCACGA
* * *
64936992 GTGTAGTACTTAGTGCAGGCTGCTACGTGTATCAGATGG-TTAGGTCACATGTGTAGTACTAAGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATTAGGTCACGTGTGTAGTACTAAGT
*
64937056 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCG
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAATATGCG
*
64937121 TACCTATTAACTTCGATCACGA
131 TACCGA-TAACTTCGATCACGA
* * *
64937143 GTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATCA-GTCACGTGTGTAGTACTAAGG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATTAGGTCACGTGTGTAGTACTAAGT
* * *
64937207 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAATATGCG
64937272 TACC
131 TACC
64937276 AGAGAGCTTC
Statistics
Matches: 254, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
150 2 0.01
151 219 0.86
152 3 0.01
153 30 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (151 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAATATGCG
TACCGATAACTTCGATCACGA
Found at i:64937498 original size:16 final size:16
Alignment explanation
Indices: 64937477--64937508 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64937467 AGAATGGAGT
64937477 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
64937493 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
64937509 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:64937669 original size:126 final size:127
Alignment explanation
Indices: 64937496--64937749 Score: 492
Period size: 126 Copynumber: 2.0 Consensus size: 127
64937486 TATGTAAAAG
64937496 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
1 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
*
64937561 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAATGATTAATGAGTAT-ATTTT
66 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
64937622 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
1 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
64937687 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
66 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
64937749 T
1 T
64937750 CATAAAAGAA
Statistics
Matches: 126, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
126 120 0.95
127 6 0.05
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.35
Consensus pattern (127 bp):
TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
Found at i:64938298 original size:180 final size:180
Alignment explanation
Indices: 64937972--64938299 Score: 491
Period size: 180 Copynumber: 1.8 Consensus size: 180
64937962 GTACCATAAG
* ***
64937972 ATAAATAATTTTTAGTGAAGAGAGGTCGAAACTATTGGATAGTGAAATAGGGGTAACTTTAATGA
1 ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTAACTTTAATGA
* * * *
64938037 ATAAAATGTACTAATTTGCTAAACTAAAAATTATTAAAATTTTATGGTAAGAATATATGTGAGTT
66 ATAAAATGTACTAATTGGCTAAACTAAAAATTATTAAAATTTTATGGTAAGAAGATATATGAGTC
* *
64938102 TAGTTTTTGGGAAAATTAGTTTCTCTCAATTTGGAGTCCTGTGCCATGAA
131 TAGTTTATGAGAAAATTAGTTTCTCTCAATTTGGAGTCCTGTGCCATGAA
*
64938152 ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTATCTTTAATGA
1 ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTAACTTTAATGA
* *
64938217 ATAAACTGTACTAATTGGAC-AAA-TAAAAAATTCTTAAAATTTTATGGTAAGAAGATATATGAG
66 ATAAAATGTACTAATTGG-CTAAACT-AAAAATTATTAAAATTTTATGGTAAGAAGATATATGAG
64938280 TCTAGTTTCAT-AGAAAATTA
129 TCTAGTTT-ATGAGAAAATTA
64938300 ACAGATCTTA
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
179 1 0.01
180 129 0.98
181 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (180 bp):
ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTAACTTTAATGA
ATAAAATGTACTAATTGGCTAAACTAAAAATTATTAAAATTTTATGGTAAGAAGATATATGAGTC
TAGTTTATGAGAAAATTAGTTTCTCTCAATTTGGAGTCCTGTGCCATGAA
Found at i:64947957 original size:15 final size:15
Alignment explanation
Indices: 64947937--64947971 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
64947927 CTTACTCGCA
64947937 CACATATATCGAAGT
1 CACATATATCGAAGT
64947952 CAC--ATATCGAAGT
1 CACATATATCGAAGT
64947965 CACATAT
1 CACATAT
64947972 CGAAGCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.72
15 5 0.28
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (15 bp):
CACATATATCGAAGT
Found at i:64947960 original size:13 final size:13
Alignment explanation
Indices: 64947942--64947976 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
64947932 TCGCACACAT
64947942 ATATCGAAGTCAC
1 ATATCGAAGTCAC
64947955 ATATCGAAGTCAC
1 ATATCGAAGTCAC
64947968 ATATCGAAG
1 ATATCGAAG
64947977 CCAACGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (13 bp):
ATATCGAAGTCAC
Found at i:64948260 original size:22 final size:22
Alignment explanation
Indices: 64948235--64948281 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
64948225 TAAAATTAAG
*
64948235 TACGTCTATTTGCTTATAAGCT
1 TACGTCTATTTGCTTATAAACT
64948257 TACGTCTATTTGCTTATAAACT
1 TACGTCTATTTGCTTATAAACT
64948279 TAC
1 TAC
64948282 CTCGGACGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (22 bp):
TACGTCTATTTGCTTATAAACT
Found at i:64949725 original size:42 final size:42
Alignment explanation
Indices: 64949624--64949795 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 42
64949614 AGCTCATACA
* * *
64949624 ATGCCAATGTCCCAGATATGGTCTTACATGTAGTCAAATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
*
64949667 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATAT-G
1 ATGCCA-TGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* *
64949709 ATGCCGATGTCCCAGACATGGTATTACACGTAAAT--AATAAGTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATG-AAATCAAAT-A-TCG
* * * * *
64949753 ATGCCAATGTTCCAGACGTGGTCTTACACGAAAACACATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
64949796 GATCCTATGT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
41 3 0.03
42 28 0.26
43 47 0.44
44 28 0.26
45 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:64955882 original size:129 final size:128
Alignment explanation
Indices: 64955647--64955927 Score: 329
Period size: 129 Copynumber: 2.2 Consensus size: 128
64955637 GTAACAAAAG
* *
64955647 CACCGCTAAAAGCCATGACTTTTGGCTGCGTTTCACCCACAAACGCCGCTAAAACCAATGACTTT
1 CACCGCT-AAAGCCATGACTTTTAGCTGCGCTTCACCCACAAACGCCGCTAAAACCAATGACTTT
64955712 TAGAGGCGCTTCACCCACAAACGCCACTAAAAGCAACGACTTTTAGCGGCACTTCACCCACAAA
65 TAGAGGCGCTTCACCCACAAACGCCACTAAAAGCAACGACTTTTAGCGGCACTTCACCCACAAA
* *
64955776 CGCCGCTATAAGCCATGACTTTTAGC-GACGCTTC-CTCCACAAACGCCGCTATAAGCC-ATGAC
1 CACCGCTA-AAGCCATGACTTTTAGCTG-CGCTTCAC-CCACAAACGCCGCTA-AAACCAATGAC
* * * ** * * **
64955838 TTTTAGCGGCGCCTT-TCCCACAAATGCTGCTAAAAGTC-ATGACTTTTAGCGGCGCTTTTCCCA
62 TTTTAGAGGCG-CTTCACCCACAAACGCCACTAAAAG-CAACGACTTTTAGCGGCACTTCACCCA
64955901 CAAA
125 CAAA
*
64955905 CACCGCTAAAGTCATGATCTTTT
1 CACCGCTAAAGCCATGA-CTTTT
64955928 GTGGCCTTTT
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
128 11 0.08
129 111 0.85
130 8 0.06
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (128 bp):
CACCGCTAAAGCCATGACTTTTAGCTGCGCTTCACCCACAAACGCCGCTAAAACCAATGACTTTT
AGAGGCGCTTCACCCACAAACGCCACTAAAAGCAACGACTTTTAGCGGCACTTCACCCACAAA
Found at i:64955927 original size:43 final size:42
Alignment explanation
Indices: 64955649--64955927 Score: 285
Period size: 43 Copynumber: 6.5 Consensus size: 42
64955639 AACAAAAGCA
* *
64955649 CCGCTAAAAGCCATGACTTTTGGCTGCG-TTTCACCCACAAACG
1 CCGCT-AAAGCCATGACTTTTAGCGGCGCTTT-ACCCACAAACG
* * *
64955692 CCGCTAAAACCAATGACTTTTAGAGGCGCTTCACCCACAAACG
1 CCGCTAAAGCC-ATGACTTTTAGCGGCGCTTTACCCACAAACG
* * * * *
64955735 CCACTAAAAGCAACGACTTTTAGCGGCACTTCACCCACAAACG
1 CCGCT-AAAGCCATGACTTTTAGCGGCGCTTTACCCACAAACG
* *
64955778 CCGCTATAAGCCATGACTTTTAGCGACGC-TTCCTCCACAAACG
1 CCGCTA-AAGCCATGACTTTTAGCGGCGCTTTAC-CCACAAACG
*
64955821 CCGCTATAAGCCATGACTTTTAGCGGCGCCTTT-CCCACAAATG
1 CCGCTA-AAGCCATGACTTTTAGCGGCG-CTTTACCCACAAACG
* * * *
64955864 CTGCTAAAAGTCATGACTTTTAGCGGCGCTTTTCCCACAAACA
1 CCGCT-AAAGCCATGACTTTTAGCGGCGCTTTACCCACAAACG
*
64955907 CCGCTAAAGTCATGATCTTTT
1 CCGCTAAAGCCATGA-CTTTT
64955928 GTGGCCTTTT
Statistics
Matches: 201, Mismatches: 25, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
42 22 0.11
43 168 0.84
44 9 0.04
45 2 0.01
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (42 bp):
CCGCTAAAGCCATGACTTTTAGCGGCGCTTTACCCACAAACG
Found at i:64956121 original size:17 final size:17
Alignment explanation
Indices: 64956096--64956129 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64956086 TATAAATATA
* *
64956096 TATTGTCATTGCATTTT
1 TATTATCATTACATTTT
64956113 TATTATCATTACATTTT
1 TATTATCATTACATTTT
64956130 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59
Consensus pattern (17 bp):
TATTATCATTACATTTT
Found at i:64960321 original size:46 final size:46
Alignment explanation
Indices: 64960254--64960425 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
64960244 AACCCGCCCC
*
64960254 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
64960300 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
64960348 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
64960393 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
64960426 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 59 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:64960366 original size:93 final size:93
Alignment explanation
Indices: 64960259--64960429 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
64960249 GCCCCTAAGT
* *
64960259 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
64960324 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
64960352 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64960417 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64960430 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64960884 original size:30 final size:30
Alignment explanation
Indices: 64960850--64960909 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64960840 ATTTAATACG
64960850 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64960880 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64960910 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64963232 original size:50 final size:50
Alignment explanation
Indices: 64963157--64963494 Score: 295
Period size: 50 Copynumber: 6.7 Consensus size: 50
64963147 CCGAAGCTCC
*
64963157 CTGGTA-AGCATAGTATCCTGCACTTAGTACTACACATGCGACCTATCAAT
1 CTGGTACA-CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
* ** * * * *
64963207 CTGGTACACATAGTAGCATGCACTTAGTACTGTACACGTGACTTATCCAT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
* * * ** *
64963257 CTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAAT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAAT
* * *
64963309 -GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAAT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
* * * ** * *
64963358 CCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTAT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTATCAAT
* * * * * * *
64963409 -TGAGTACGCATAGCATCCTGTACTTAGCACTACAAATGCGACCTAACAAT
1 CTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
* * **
64963459 CTGGTACACGTAGTAGACAACACTTAGTACTACACA
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACA
64963495 CATGACCTAA
Statistics
Matches: 225, Mismatches: 56, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
49 4 0.02
50 144 0.64
51 74 0.33
52 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
CTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
Found at i:64963366 original size:101 final size:100
Alignment explanation
Indices: 64963157--64963495 Score: 331
Period size: 101 Copynumber: 3.4 Consensus size: 100
64963147 CCGAAGCTCC
* * * ** * * *
64963157 CTGGTA-AGCATAGTATCCTGCACTTAGTACTACACATGCGA-CCTATCAATCTGGTACACATAG
1 CTGGTACA-CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAATTAAT-GGGTACGCATAG
* ** * * * *
64963220 TAGCATGCACTTAGTACTGTACACGTGACTTATCCAT
64 TAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
*
64963257 CTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAATGGGTACGCATAGT
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TTAATGGGTACGCATAGT
*
64963322 AGCCTACACTTAGTACTACACATGCGACCTATCAAT
65 AGCCTGCACTTAGTACTACACATGCGACCTATCAAT
* * * * * * *
64963358 CCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATTGAGTACGCATAGC
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCG-AATTAATGGGTACGCATAGT
* * * * *
64963423 ATCCTGTACTTAGCACTACAAATGCGACCTAACAAT
65 AGCCTGCACTTAGTACTACACATGCGACCTATCAAT
* * **
64963459 CTGGTACACGTAGTAGACAACACTTAGTACTACACAC
1 CTGGTACACATAGTAGCCTGCACTTAGTACTACACAC
64963496 ATGACCTAAA
Statistics
Matches: 199, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
100 35 0.18
101 158 0.79
102 6 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (100 bp):
CTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAATTAATGGGTACGCATAGTA
GCCTGCACTTAGTACTACACATGCGACCTATCAAT
Found at i:64963465 original size:151 final size:151
Alignment explanation
Indices: 64963157--64963494 Score: 367
Period size: 151 Copynumber: 2.2 Consensus size: 151
64963147 CCGAAGCTCC
* * * *
64963157 CTGGTAAGCATAGTATCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTA
1 CTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGTA
** ** * * *
64963222 GCATGCACTTAGTACTGTACACGTGACTTATCCATCTGATACACATAGTAGCCTGCACTTAGTAC
66 GCATGCACTTAGTACTACACACGTGACGAAACCATCTGATACACATAGCAGCCTGCACTTAGCAC
* * * *
64963287 TACACACGTGATCGAAGTTAAT
131 TACAAACGCGACCGAAG-CAAT
* *
64963309 -GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTA
1 CTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGTA
* * * * * *
64963373 GCCTGCACTTAGTACTACACATGTGATCGAAACTAT-TGAGTACGCATAGCATCCTGTACTTAGC
66 GCATGCACTTAGTACTACACACGTGA-CGAAACCATCTGA-TACACATAGCAGCCTGCACTTAGC
* *
64963437 ACTACAAATGCGACCTAA-CAAT
129 ACTACAAACGCGACCGAAGCAAT
* * * *
64963459 CTGGTACACGTAGTAGACAACACTTAGTACTACACA
1 CTGGTACGCATAGTAGCCTACACTTAGTACTACACA
64963495 CATGACCTAA
Statistics
Matches: 153, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
150 3 0.02
151 113 0.74
152 37 0.24
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (151 bp):
CTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGTA
GCATGCACTTAGTACTACACACGTGACGAAACCATCTGATACACATAGCAGCCTGCACTTAGCAC
TACAAACGCGACCGAAGCAAT
Found at i:64964226 original size:30 final size:30
Alignment explanation
Indices: 64964169--64964227 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
64964159 CAAAATTCAT
* *
64964169 ACTTTTACAAATTTACATTTTGACCCCTAA
1 ACTTTCACAAATTTACACTTTGACCCCTAA
* * *
64964199 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTACACTTTGACCCCTA
64964228 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTACACTTTGACCCCTAA
Done.