Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 189 of 311
Found at i:64965766 original size:131 final size:131
Alignment explanation
Indices: 64965506--64965762 Score: 347
Period size: 131 Copynumber: 2.0 Consensus size: 131
64965496 AATTTAGAGA
* * * * * *
64965506 ACATGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAAACAGGAAATTGCAACCCAACAT
1 ACATGAGTGAAATTCCAAAGGAACATTCGATTATTTTGAAAAAACAGGAAATCGCAACCCAACAC
* * * *
64965571 GATAGGGCACGATTTCCCGAATCGCCAAATATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
66 GATAGAGAACGATTTCCCGAATCGCCAAACATCGAGTATTACATTCGTTTTGAAGAATTTTTAAA
64965636 G
131 G
* * *
64965637 ACATGAGTGAAATTCCAAAGGAACATTCGATTGTTTTGAAAAAACGGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAAGGAACATTCGATTATTTTGAAAAAACAGGAAATCGCAACCCAACAC
* **
64965702 GATAGAGAACGA-TTCCCGAATTGCCAAACATCGAGTATTGTATTCGTTTT-AGAGAATTTTT
66 GATAGAGAACGATTTCCCGAATCGCCAAACATCGAGTATTACATTCGTTTTGA-AGAATTTTT
64965763 TAAAAGAATA
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
129 1 0.01
130 42 0.39
131 66 0.61
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (131 bp):
ACATGAGTGAAATTCCAAAGGAACATTCGATTATTTTGAAAAAACAGGAAATCGCAACCCAACAC
GATAGAGAACGATTTCCCGAATCGCCAAACATCGAGTATTACATTCGTTTTGAAGAATTTTTAAA
G
Found at i:64967589 original size:47 final size:47
Alignment explanation
Indices: 64967528--64967696 Score: 206
Period size: 47 Copynumber: 3.6 Consensus size: 47
64967518 ATCCATAAGT
*
64967528 GAACTCGGACTCAACTCAACGAGGTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
64967575 GAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
64967621 GAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAG-TTCGGATGCCTAGTTACATCTCAC
64967668 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
64967697 AGTTCGCATC
Statistics
Matches: 102, Mismatches: 9, Indels: 22
0.77 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 27 0.26
47 55 0.54
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64967593 original size:93 final size:93
Alignment explanation
Indices: 64967489--64967746 Score: 426
Period size: 93 Copynumber: 2.8 Consensus size: 93
64967479 AGGGAACTTG
* * ** *
64967489 GACTCAACTCAACAAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGGTC
1 GACTCAACTCAACGAGTTCGGAAGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTC
64967554 GGATGCCTAGTTACATCTCACGAACTCA
66 GGATGCCTAGTTACATCTCACGAACTCA
* *
64967582 GACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTT
1 GACTCAACTCAACGAGTTCGGAAGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTC
*
64967647 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCA
* *
64967675 GACTCAACTCAACGAGTTCGGAAGTTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 GACTCAACTCAACGAGTTCGGAAGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTC
64967740 GGATGCC
66 GGATGCC
64967747 CAAAATCCGA
Statistics
Matches: 154, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GACTCAACTCAACGAGTTCGGAAGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTC
GGATGCCTAGTTACATCTCACGAACTCA
Found at i:64967642 original size:46 final size:46
Alignment explanation
Indices: 64967474--64967742 Score: 232
Period size: 46 Copynumber: 5.8 Consensus size: 46
64967464 TGTAACCCGC
* * * * **
64967474 CCATAAGGGAACTTGGACTCAACTCAACAAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
64967520 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
64967570 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
64967613 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA---C--GTTCGCAT
* * *
64967663 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
64967706 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64967743 TGCCCAAAAT
Statistics
Matches: 180, Mismatches: 23, Indels: 40
0.74 0.09 0.16
Matches are distributed among these distances:
42 6 0.03
43 6 0.03
44 3 0.02
45 4 0.02
46 87 0.48
47 55 0.31
48 4 0.02
49 3 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:64971106 original size:44 final size:43
Alignment explanation
Indices: 64970975--64971106 Score: 131
Period size: 44 Copynumber: 3.0 Consensus size: 43
64970965 AATTTTTATC
* ** * *
64970975 CTGCTCCACTGCAACTTTAGAGAGATAAGGATTGTGA-CTTCGAT
1 CTGCTCCACTGCAACTTCAG-GAGATAA-GATTGCAATATTCGGT
* * *
64971019 CTGCTCCACTGTATCTTCAGGGAGATAAGATCTACAATATTCGGT
1 CTGCTCCACTGCAACTTCA-GGAGATAAGAT-TGCAATATTCGGT
*
64971064 CTGCTCCACTGCAACTTCAGGAGATAAGACTTGCAATTTTCGG
1 CTGCTCCACTGCAACTTCAGGAGATAAGA-TTGCAATATTCGG
64971107 CCTATTCCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
43 3 0.04
44 45 0.62
45 24 0.33
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
CTGCTCCACTGCAACTTCAGGAGATAAGATTGCAATATTCGGT
Found at i:64971124 original size:44 final size:45
Alignment explanation
Indices: 64971022--64971134 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 45
64971012 CTTCGATCTG
* * *
64971022 CTCCACTGTATCTTCAGGGAGATAAGATCTACAATATTCGGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTACAATATTCGGCCTA
* * *
64971067 CTCCACTGCAACTTCA-GGAGATAAGA-CTTGCAATTTTCGGCCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATC-TACAATATTCGGCCTA
* * **
64971111 TTCCACTATAACTTTTGGGAGATA
1 CTCCACTGTAACTTCAGGGAGATA
64971135 GGGTGGTGGA
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
43 1 0.02
44 33 0.60
45 21 0.38
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTACAATATTCGGCCTA
Found at i:64971219 original size:133 final size:133
Alignment explanation
Indices: 64971058--64971370 Score: 371
Period size: 133 Copynumber: 2.4 Consensus size: 133
64971048 ATCTACAATA
* * * * * * *
64971058 TTCGGTCTGCTCCACTGCAACTTC-AGGAGATAAGA-CTTGCAATTTTCGGCCT-ATTCCACTAT
1 TTCGATCTACTCCACTGCAACTTCAAGGAGACAAGATC-TACAATCTTCGACCTGATT-CACTAC
* * *** * *
64971120 AACTTTTGGGAGATAGGGTGGTGGATTAAATCTGTTTCACTACAACTTAAGAAAGACAAGATTCA
64 AACTTTAGAGAGATAAAATGGTGGATTAAATATGCTTCACTACAACTTAAGAAAGACAAGATTCA
64971185 CCGTC
129 CCGTC
* * *
64971190 TTCGATCTACTTCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCGATCTGCTTCACTACAA
1 TTCGATCTACTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCGACCTGATTCACTACAA
* * * * *
64971255 CTTTAGAGAGATAAAATTGTGGCTTAAATATGCTTCACTACAACTTTAGGAAGACAAGATTCTCC
66 CTTTAGAGAGATAAAATGGTGGATTAAATATGCTTCACTACAACTTAAGAAAGACAAGATTCACC
64971320 GTC
131 GTC
* *
64971323 TTCGATCTGCTCCACTGCAATTTCAAGGAGACAAGATCTACAATCTTC
1 TTCGATCTACTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTC
64971371 AGCCTGTTAC
Statistics
Matches: 153, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
132 21 0.14
133 129 0.84
134 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (133 bp):
TTCGATCTACTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCGACCTGATTCACTACAA
CTTTAGAGAGATAAAATGGTGGATTAAATATGCTTCACTACAACTTAAGAAAGACAAGATTCACC
GTC
Found at i:64971222 original size:45 final size:44
Alignment explanation
Indices: 64971149--64971359 Score: 167
Period size: 45 Copynumber: 4.7 Consensus size: 44
64971139 GGTGGATTAA
* *
64971149 ATCTGTTTCACTACAACTTAAGAAAGACAAGATTCACCGTCTTCG
1 ATCTGCTTCACTACAACTTAAG-GAGACAAGATTCACCGTCTTCG
* * **
64971194 ATCTACTTCACTGCAACTTCAAGGAGACAAGA-TCTACAATCTTCG
1 ATCTGCTTCACTACAACTT-AAGGAGACAAGATTC-ACCGTCTTCG
* * * ** * **
64971239 ATCTGCTTCACTACAACTTTAGAGAGATAAAATT--GTGGCTTAA
1 ATCTGCTTCACTACAACTTAAG-GAGACAAGATTCACCGTCTTCG
* * *
64971282 ATATGCTTCACTACAACTTTAGGAAGACAAGATTCTCCGTCTTCG
1 ATCTGCTTCACTACAACTTAAGG-AGACAAGATTCACCGTCTTCG
* * *
64971327 ATCTGCTCCACTGCAATTTCAAGGAGACAAGAT
1 ATCTGCTTCACTACAACTT-AAGGAGACAAGAT
64971360 CTACAATCTT
Statistics
Matches: 128, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
42 1 0.01
43 32 0.25
44 4 0.03
45 84 0.66
46 7 0.05
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (44 bp):
ATCTGCTTCACTACAACTTAAGGAGACAAGATTCACCGTCTTCG
Found at i:64971478 original size:78 final size:79
Alignment explanation
Indices: 64971349--64971503 Score: 233
Period size: 78 Copynumber: 2.0 Consensus size: 79
64971339 GCAATTTCAA
*
64971349 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGG-CT-TGCTTCT
1 GGAGACAAGATCTACAATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGTCTGT-CTTCT
*
64971412 TTGATCTGCTCCATT
65 TCGATCTGCTCCATT
* * * *
64971427 GGAGACGAGATTTGCAATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGTCTGTTTTCTT
1 GGAGACAAGATCTACAATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGTCTGTCTTCTT
64971492 CGATCTGCTCCA
66 CGATCTGCTCCA
64971504 CTACTGTTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
78 50 0.72
79 18 0.26
80 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (79 bp):
GGAGACAAGATCTACAATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGTCTGTCTTCTT
CGATCTGCTCCATT
Found at i:64977011 original size:40 final size:40
Alignment explanation
Indices: 64976928--64977108 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
64976918 AATCAAGCAT
** ** * *
64976928 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
64976966 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
64977006 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
64977046 CTTC-GGATCTTAGTCCGGATGTAGTCTCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
64977087 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
64977109 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 10 0.08
39 18 0.15
40 60 0.51
41 27 0.23
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:64978336 original size:38 final size:38
Alignment explanation
Indices: 64978294--64978369 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
64978284 CAAGAACTCC
64978294 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
64978332 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
64978370 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:64986500 original size:131 final size:131
Alignment explanation
Indices: 64986240--64986496 Score: 347
Period size: 131 Copynumber: 2.0 Consensus size: 131
64986230 AATTTAGAGA
* * * *
64986240 ACATGAGTGAAATTCTAAAGTAATATTCCATTATTTTGAACAAACAGGAAATCACAACCCAGCAT
1 ACATGAGTGAAATTCCAAAGGAACATTCCATTATTTTGAAAAAACAGGAAATCACAACCCAGCAT
* *
64986305 GATAGGGCACGATTCCCCGAATCGCCAAATATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
66 GATAGAGCACGATTCCCCGAATCGCCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
64986370 G
131 G
* * * ** * *
64986371 ACATGAGTGAAATTCCAATGGAACATTCGATTGTTTTGAAAAAATGGGAAATCGCAACCTAGCAT
1 ACATGAGTGAAATTCCAAAGGAACATTCCATTATTTTGAAAAAACAGGAAATCACAACCCAGCAT
* * *
64986436 GATAGAGCACGATT-CTCGAATTGCCAAACATCGAGTATTGCCTTCGTTTT-AGAGAATTTTT
66 GATAGAGCACGATTCCCCGAATCGCCAAACATCGAGTATTACCTTCGTTTTGA-AGAATTTTT
64986497 TAAAAGAATA
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
129 1 0.01
130 41 0.38
131 67 0.61
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (131 bp):
ACATGAGTGAAATTCCAAAGGAACATTCCATTATTTTGAAAAAACAGGAAATCACAACCCAGCAT
GATAGAGCACGATTCCCCGAATCGCCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
G
Found at i:64996717 original size:18 final size:18
Alignment explanation
Indices: 64996694--64996728 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64996684 ACGATGTGGC
64996694 AAACTATTTTCATGCTTG
1 AAACTATTTTCATGCTTG
*
64996712 AAACTATTTTGATGCTT
1 AAACTATTTTCATGCTT
64996729 ACCATTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:64997526 original size:33 final size:34
Alignment explanation
Indices: 64997455--64997527 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
64997445 GTTAGACCTT
* *
64997455 AGCCCATTACAGTAACAGTAGTAGTTTGGGCCTG
1 AGCCCATTACAGTAACAGTAGTAGTTGGGGCCTA
64997489 AGCCCATTACAGTAACAGTAGTAG-TGGGGCCTA
1 AGCCCATTACAGTAACAGTAGTAGTTGGGGCCTA
64997522 AGCCCA
1 AGCCCA
64997528 AAACAGAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
33 13 0.35
34 24 0.65
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (34 bp):
AGCCCATTACAGTAACAGTAGTAGTTGGGGCCTA
Found at i:64997541 original size:33 final size:34
Alignment explanation
Indices: 64997463--64997541 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 34
64997453 TTAGCCCATT
* * **
64997463 ACAGTAACAGTAGTAGTTTGGGCCTGAGCCCATT
1 ACAGTAACAGTAGTAGTTGGGGCCTAAGCCCAAA
64997497 ACAGTAACAGTAGTAG-TGGGGCCTAAGCCCAAA
1 ACAGTAACAGTAGTAGTTGGGGCCTAAGCCCAAA
64997530 ACAG-AATCAGTA
1 ACAGTAA-CAGTA
64997542 CAGTATGCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.05
33 22 0.55
34 16 0.40
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (34 bp):
ACAGTAACAGTAGTAGTTGGGGCCTAAGCCCAAA
Found at i:65002062 original size:33 final size:34
Alignment explanation
Indices: 65002025--65002099 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
65002015 AGAAACAGTC
* *
65002025 TAGTATCAG-TTAGGCCTTAGCCCATTACAGTAA
1 TAGTAGCAGTTTAGGCCTGAGCCCATTACAGTAA
*
65002058 TAGTAGCAGTTTGGGCCTGAGCCCATTACAGTAA
1 TAGTAGCAGTTTAGGCCTGAGCCCATTACAGTAA
*
65002092 CAGTAGCA
1 TAGTAGCA
65002100 CTGGGGCCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 8 0.22
34 29 0.78
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (34 bp):
TAGTAGCAGTTTAGGCCTGAGCCCATTACAGTAA
Found at i:65005464 original size:40 final size:40
Alignment explanation
Indices: 65005359--65005530 Score: 192
Period size: 39 Copynumber: 4.4 Consensus size: 40
65005349 AAGGCATTCG
* * *
65005359 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGACTATAT
* * *
65005399 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTG-CTATAC
1 CCGGGTTAAGACCCGAAGGCAATTGTGCGAG-TGACTATAT
* * *
65005438 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGACTATAT
* *
65005478 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTG-CTATA-
1 CCGGGTTAAGACCCGAAGGCAATTGTGCGAG-TGACTATAT
65005516 CCGGGTTAAGACCCG
1 CCGGGTTAAGACCCG
65005531 GGGACTAAGA
Statistics
Matches: 109, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 10 0.09
39 55 0.50
40 44 0.40
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGACTATAT
Found at i:65005490 original size:79 final size:78
Alignment explanation
Indices: 65005359--65005530 Score: 335
Period size: 79 Copynumber: 2.2 Consensus size: 78
65005349 AAGGCATTCG
65005359 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCGAAGGCATTTGT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCGAAGGCATTTGT
65005424 GCGAGTTGCTATA
66 GCGAGTTGCTATA
65005437 CCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCGAAGGCATTTG
1 -CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCGAAGGCATTTG
65005502 TGCGAGTTGCTATA
65 TGCGAGTTGCTATA
65005516 CCGGGTTAAGACCCG
1 CCGGGTTAAGACCCG
65005531 GGGACTAAGA
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 15 0.16
79 78 0.84
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (78 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCGAAGGCATTTGT
GCGAGTTGCTATA
Found at i:65005555 original size:53 final size:52
Alignment explanation
Indices: 65005483--65005583 Score: 159
Period size: 53 Copynumber: 1.9 Consensus size: 52
65005473 TTTATCCGGG
* *
65005483 CTAAGACCGAAGGCATTTGTGCGAGTTGCT-ATACCGGGTTAAGACCCGGGGA
1 CTAAGACCGAAGGCATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGGGGA
65005535 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCG
1 CTAAGA-CCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCG
65005584 AAGGCATTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
52 6 0.13
53 37 0.82
54 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (52 bp):
CTAAGACCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGGGGA
Found at i:65013692 original size:80 final size:80
Alignment explanation
Indices: 65013470--65013808 Score: 531
Period size: 80 Copynumber: 4.3 Consensus size: 80
65013460 ATTTGAATGA
* * * *
65013470 TATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
*
65013535 ATGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
65013550 TATCCGGACTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
65013614 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
65013629 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
65013694 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
* * * * *
65013709 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
* * *
65013774 TTGTGCTTGTGGTTA
66 TTGTGCTAGTGATTT
65013789 TATCCGG-CTAA-ATTCCGAAG
1 TATCCGGACTAAGA-TCCGAAG
65013809 AAACTTGGGT
Statistics
Matches: 245, Mismatches: 12, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
78 1 0.00
79 87 0.36
80 157 0.64
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
TTGTGCTAGTGATTT
Found at i:65013779 original size:40 final size:40
Alignment explanation
Indices: 65013469--65013779 Score: 318
Period size: 40 Copynumber: 7.8 Consensus size: 40
65013459 CATTTGAATG
* * *
65013469 ATATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * ** * * *
65013509 ATACCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * *
65013549 TTATCCGGACTAAGA-CCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * * * * *
65013588 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * * *
65013628 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * * * * *
65013668 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * *
65013708 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
*
65013748 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
65013780 TTGTGGTTAT
Statistics
Matches: 208, Mismatches: 62, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
39 29 0.14
40 179 0.86
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
Found at i:65016355 original size:28 final size:30
Alignment explanation
Indices: 65016270--65016357 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
65016260 ACCCCAAGGG
* *
65016270 ACACACGGCTGTATAACATGACTGTGTGTC
1 ACACACGGCTGTAGAACATGACTATGTGTC
* *
65016300 ACACACGGCTGTATAACATGACTGTGTGTC
1 ACACACGGCTGTAGAACATGACTATGTGTC
65016330 ACACACGGCTG-AGACACATG-C-ATGTGTC
1 ACACACGGCTGTAGA-ACATGACTATGTGTC
65016358 TTTGCCCGTA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
28 6 0.11
29 3 0.05
30 46 0.84
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (30 bp):
ACACACGGCTGTAGAACATGACTATGTGTC
Found at i:65016356 original size:30 final size:30
Alignment explanation
Indices: 65016270--65016340 Score: 142
Period size: 30 Copynumber: 2.4 Consensus size: 30
65016260 ACCCCAAGGG
65016270 ACACACGGCTGTATAACATGACTGTGTGTC
1 ACACACGGCTGTATAACATGACTGTGTGTC
65016300 ACACACGGCTGTATAACATGACTGTGTGTC
1 ACACACGGCTGTATAACATGACTGTGTGTC
65016330 ACACACGGCTG
1 ACACACGGCTG
65016341 AGACACATGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (30 bp):
ACACACGGCTGTATAACATGACTGTGTGTC
Found at i:65017289 original size:42 final size:42
Alignment explanation
Indices: 65017181--65017345 Score: 138
Period size: 43 Copynumber: 3.9 Consensus size: 42
65017171 AACATATACA
* * * * * *
65017181 ATGCCAACGTCCCTGACGTGGTCTTACATGTAATTAAACACCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAGA-AGCG
* *
65017224 ATGCC-ACTATCCCAGATAG-GGTCTTACACGAAATCAGATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAATCAGA-AGCG
* * * *
65017266 ATGCCAATGTCTCAGACTTGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCAGAAG-CG
*
65017310 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCA
65017346 CATAACGAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
42 27 0.28
43 40 0.42
44 29 0.30
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAGAAGCG
Found at i:65021104 original size:6 final size:7
Alignment explanation
Indices: 65021088--65021112 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65021078 TTCTTTGTAC
65021088 TTTTAGT
1 TTTTAGT
65021095 TTTTAGT
1 TTTTAGT
65021102 TTTTAGT
1 TTTTAGT
65021109 TTTT
1 TTTT
65021113 CATTCTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (7 bp):
TTTTAGT
Found at i:65022971 original size:28 final size:27
Alignment explanation
Indices: 65022926--65023027 Score: 105
Period size: 28 Copynumber: 3.7 Consensus size: 27
65022916 AGCATAACTG
**
65022926 TAAATGTGATTGGGCCTAATGGCCGTA
1 TAAATGTGATTGGGCCTAATGGCCACA
* *
65022953 TGAATTTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAAT-GGCCACA
* *
65022982 TAAATGTGATTGGGCCTAATGGGTCATA
1 TAAATGTGATTGGGCCTAAT-GGCCACA
* *
65023010 TAAAAGAGATTGGGCCTA
1 TAAATGTGATTGGGCCTA
65023028 GTGGGCCATA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 7 0.11
28 44 0.70
29 12 0.19
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (27 bp):
TAAATGTGATTGGGCCTAATGGCCACA
Found at i:65023023 original size:56 final size:56
Alignment explanation
Indices: 65022926--65023035 Score: 141
Period size: 56 Copynumber: 2.0 Consensus size: 56
65022916 AGCATAACTG
* * ***
65022926 TAAATGTGATTGGGCCTAATGGCCGTATGAATTTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGGCCATATAAAAGAGATTTGGGCCTAATGGGCCACA
* *
65022982 TAAATGTGATTGGGCCTAATGGGTCATATAAAAGAGA-TTGGGCCTAGTGGGCCA
1 TAAATGTGATTGGGCCTAAT-GGCCATATAAAAGAGATTTGGGCCTAATGGGCCA
65023036 TATACAGGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
56 36 0.78
57 10 0.22
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATAAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:65023032 original size:28 final size:28
Alignment explanation
Indices: 65022963--65023039 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
65022953 TGAATTTGAT
* * *
65022963 TTGGGCCTAATGGGCCACATAAATGTGA
1 TTGGGCCTAATGGGCCATATAAAAGAGA
*
65022991 TTGGGCCTAATGGGTCATATAAAAGAGA
1 TTGGGCCTAATGGGCCATATAAAAGAGA
*
65023019 TTGGGCCTAGTGGGCCATATA
1 TTGGGCCTAATGGGCCATATA
65023040 CAGGTATGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAAAGAGA
Found at i:65030846 original size:43 final size:43
Alignment explanation
Indices: 65030795--65030883 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
65030785 CATAGGATTT
* *
65030795 TCGATATGTG-TTCTCGTGTAAGACCACATCTGGGACATTGGCA
1 TCGATATGTGATTAT-GTGTAAGACCACATCTGGGACATCGGCA
** *
65030838 TCGATATGTGATTATGTGTAAGACCATGTTTGGGACATCGGCA
1 TCGATATGTGATTATGTGTAAGACCACATCTGGGACATCGGCA
65030881 TCG
1 TCG
65030884 TATTTCATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 37 0.93
44 3 0.08
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTATGTGTAAGACCACATCTGGGACATCGGCA
Found at i:65030913 original size:41 final size:42
Alignment explanation
Indices: 65030810--65030935 Score: 114
Period size: 43 Copynumber: 3.0 Consensus size: 42
65030800 ATGTGTTCTC
** * *
65030810 GTGTAAGACCACATCTGGGACATTGGCATCGATATGTGATTA
1 GTGTAAGACCATGTCTGGGACATCGGCATCGATATGTCATTA
* *
65030852 TGTGTAAGACCATGTTTGGGACATCGGCATCG-TATTTCATTCA
1 -GTGTAAGACCATGTCTGGGACATCGGCATCGATATGTCATT-A
* * * *
65030895 -TGTAAGACCCTGTCTGGGATAGT-GGCAACGATATGTGATTA
1 GTGTAAGACCATGTCTGGGACA-TCGGCATCGATATGTCATTA
65030936 CATGTAGGAC
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
41 25 0.37
42 15 0.22
43 28 0.41
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCGATATGTCATTA
Found at i:65041273 original size:40 final size:40
Alignment explanation
Indices: 65041218--65041435 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
65041208 CGGATGATAA
* * *
65041218 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
65041258 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
65041298 CCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65041338 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
65041378 CCGGGTTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
65041418 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65041436 TACCTGGCTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.11
40 144 0.89
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65048954 original size:31 final size:32
Alignment explanation
Indices: 65048916--65048977 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
65048906 CTCGCTGCAA
*
65048916 TCTGGTGGCTTCA-CCAC-ATATATATATCTGT
1 TCTGGTGGCCT-AGCCACAATATATATATCTGT
*
65048947 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
65048978 GTTACTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 1 0.04
31 14 0.52
32 12 0.44
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:65060808 original size:82 final size:81
Alignment explanation
Indices: 65060692--65060847 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
65060682 AAATTGTACA
* * * *
65060692 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
65060756 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
65060773 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
65060838 TGCGAGTTGA
65 TGCGAATTGA
65060848 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:65060815 original size:55 final size:52
Alignment explanation
Indices: 65060691--65060844 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
65060681 TAAATTGTAC
* *
65060691 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
65060744 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
65060799 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
65060845 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:65060849 original size:27 final size:27
Alignment explanation
Indices: 65060692--65060847 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
65060682 AAATTGTACA
*
65060692 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
65060719 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
65060746 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
65060773 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
65060801 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
65060828 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
65060848 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:65060858 original size:27 final size:27
Alignment explanation
Indices: 65060684--65060868 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
65060674 GCGGGATTAA
*
65060684 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
65060711 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
65060738 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
65060765 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
65060793 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
65060820 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
65060847 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
65060869 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:65060859 original size:82 final size:81
Alignment explanation
Indices: 65060684--65060868 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
65060674 GCGGGATTAA
* * * *
65060684 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
65060749 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
65060765 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
65060829 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
65060847 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
65060869 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:65068701 original size:82 final size:81
Alignment explanation
Indices: 65068585--65068740 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
65068575 AAATTGTACA
* * * *
65068585 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
65068649 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
65068666 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
65068731 TGCGAGTTGA
65 TGCGAATTGA
65068741 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:65068708 original size:55 final size:52
Alignment explanation
Indices: 65068584--65068737 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
65068574 TAAATTGTAC
* *
65068584 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
65068637 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
65068692 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
65068738 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:65068742 original size:27 final size:27
Alignment explanation
Indices: 65068585--65068740 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
65068575 AAATTGTACA
*
65068585 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
65068612 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
65068639 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
65068666 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
65068694 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
65068721 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
65068741 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:65068751 original size:27 final size:27
Alignment explanation
Indices: 65068577--65068761 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
65068567 GCGGGATTAA
*
65068577 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
65068604 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
65068631 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
65068658 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
65068686 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
65068713 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
65068740 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
65068762 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:65068752 original size:82 final size:81
Alignment explanation
Indices: 65068577--65068761 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
65068567 GCGGGATTAA
* * * *
65068577 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
65068642 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
65068658 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
65068722 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
65068740 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
65068762 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:65074034 original size:13 final size:13
Alignment explanation
Indices: 65074016--65074040 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65074006 AAATCTGTTT
65074016 TGAGTGCTGCTCA
1 TGAGTGCTGCTCA
65074029 TGAGTGCTGCTC
1 TGAGTGCTGCTC
65074041 TTGTTAAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (13 bp):
TGAGTGCTGCTCA
Found at i:65074498 original size:16 final size:16
Alignment explanation
Indices: 65074477--65074518 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
65074467 TTATTAAATT
*
65074477 ATATATTTTAATTATA
1 ATATATTTTAATAATA
65074493 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
65074508 AT-TATGTTTAA
1 ATATAT-TTTAA
65074519 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:65074503 original size:15 final size:15
Alignment explanation
Indices: 65074468--65074509 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
65074458 TTAAGAATTT
*
65074468 TATTAAATTAT-ATA
1 TATTTAATTATAATA
65074482 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
65074496 TATTTAATAATAAT
1 TATTTAATTATAAT
65074510 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:65074744 original size:45 final size:44
Alignment explanation
Indices: 65074663--65074753 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
65074653 ATCTCTATTC
* *
65074663 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCAATA
*** *
65074707 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCAATA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCAATA
65074752 CA
1 CA
65074754 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCAATA
Found at i:65074755 original size:16 final size:16
Alignment explanation
Indices: 65074734--65074801 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
65074724 GATTTGCTAT
*
65074734 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
65074750 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
*
65074766 TACACCTCTAAGCCAA
1 TACACCTCTAATCCAA
*
65074782 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
65074798 TACA
1 TACA
65074802 GCGAACCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.35, C:0.35, G:0.01, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:65081891 original size:26 final size:26
Alignment explanation
Indices: 65081856--65081907 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
65081846 AATGTGAAAG
*
65081856 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
65081882 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
65081908 TTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:65081960 original size:104 final size:104
Alignment explanation
Indices: 65081778--65082146 Score: 620
Period size: 104 Copynumber: 3.6 Consensus size: 104
65081768 TGTATATAAA
** * * *
65081778 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
65081842 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65081881 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
65081946 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65081986 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
65082051 TGAAA--TAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
65082088 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
65082147 ATAACGGTTA
Statistics
Matches: 255, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
102 89 0.35
103 25 0.10
104 108 0.42
105 33 0.13
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:65089472 original size:26 final size:26
Alignment explanation
Indices: 65089437--65089487 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
65089427 AATGTGAAAG
*
65089437 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
65089463 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
65089488 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:65089572 original size:26 final size:26
Alignment explanation
Indices: 65089537--65089588 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
65089527 GAAATGAAAG
*
65089537 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
65089563 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
65089589 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:65089680 original size:101 final size:101
Alignment explanation
Indices: 65089359--65089721 Score: 597
Period size: 100 Copynumber: 3.6 Consensus size: 101
65089349 TGTATATAAA
** * * *
65089359 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
65089423 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65089462 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
65089526 TGAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65089562 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCT-AGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
65089626 TGAAATAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
65089663 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
65089722 ATAACGGTTA
Statistics
Matches: 248, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
100 109 0.44
101 61 0.25
102 53 0.21
103 25 0.10
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (101 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:65092894 original size:26 final size:26
Alignment explanation
Indices: 65092861--65092920 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
65092851 CCCATGAAAC
*
65092861 CGCTCACGGTAGCTTCCACGATCAAA
1 CGCTCACGGTAGCCTCCACGATCAAA
* **
65092887 CGCTCACGTTTTCCTCCACGATCAAA
1 CGCTCACGGTAGCCTCCACGATCAAA
65092913 CGCTCACG
1 CGCTCACG
65092921 TTTTAGGCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.22
Consensus pattern (26 bp):
CGCTCACGGTAGCCTCCACGATCAAA
Found at i:65092921 original size:26 final size:26
Alignment explanation
Indices: 65092875--65092924 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
65092865 CACGGTAGCT
65092875 TCCACGATCAAACGCTCACGTTTTCC
1 TCCACGATCAAACGCTCACGTTTTCC
65092901 TCCACGATCAAACGCTCACGTTTT
1 TCCACGATCAAACGCTCACGTTTT
65092925 AGGCGTTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (26 bp):
TCCACGATCAAACGCTCACGTTTTCC
Found at i:65096488 original size:12 final size:12
Alignment explanation
Indices: 65096471--65096505 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
65096461 CACACACACC
65096471 CGTGTGCTAGGT
1 CGTGTGCTAGGT
65096483 CGTGTGCTAGGT
1 CGTGTGCTAGGT
*
65096495 TGTGTGCTAGG
1 CGTGTGCTAGG
65096506 CCATTCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.43, T:0.34
Consensus pattern (12 bp):
CGTGTGCTAGGT
Found at i:65097633 original size:33 final size:33
Alignment explanation
Indices: 65097586--65097661 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
65097576 ATGTGCAAAC
* *
65097586 TTCATA-ACTTCTTAAATTTAAATCTTGTAAGA
1 TTCATATACATCTTAAATTTAAATCTCGTAAGA
65097618 TTCATATACATCTTAAATTTAAATCTCGTAAGA
1 TTCATATACATCTTAAATTTAAATCTCGTAAGA
65097651 TTCATATACAT
1 TTCATATACAT
65097662 TCCTGAACCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 6 0.15
33 35 0.85
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.42
Consensus pattern (33 bp):
TTCATATACATCTTAAATTTAAATCTCGTAAGA
Found at i:65097979 original size:40 final size:40
Alignment explanation
Indices: 65097722--65097986 Score: 318
Period size: 40 Copynumber: 6.6 Consensus size: 40
65097712 ACTCAAATTC
* * **
65097722 TCGCACACTAAGTGACAATACATTGCCGAAGCTAT-TTTAA
1 TCGCACACTAAGTG-CCATACATAGCCGAAGCTATCTCGAA
65097762 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
1 --TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* *
65097804 TCGCACACTAAGTGCAATACATAGCTGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* * *
65097844 TCACACACTAAGTG-CAGTATATAGCCGACGCTATCTCGAA
1 TCGCACACTAAGTGCCA-TACATAGCCGAAGCTATCTCGAA
* * * *
65097884 TCGTACCCTAAGTGGCATACATAGGCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* *
65097924 TCGCACACTAAGTGCCATAGATAGCCGAAGTTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* * *
65097964 TAGAACACTAAGTGCCGTACATA
1 TCGCACACTAAGTGCCATACATA
65097987 ACTGAATTGT
Statistics
Matches: 193, Mismatches: 27, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 155 0.80
41 20 0.10
42 17 0.09
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
Found at i:65102885 original size:24 final size:24
Alignment explanation
Indices: 65102858--65102907 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
65102848 TTCTTCAATT
65102858 TAAAGCTCGTATGATTCATATACA
1 TAAAGCTCGTATGATTCATATACA
* *
65102882 TAAATCTCGTATGATTTATATACA
1 TAAAGCTCGTATGATTCATATACA
65102906 TA
1 TA
65102908 CTTGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (24 bp):
TAAAGCTCGTATGATTCATATACA
Found at i:65103069 original size:40 final size:40
Alignment explanation
Indices: 65102970--65103151 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
65102960 CGAATTCTCT
* * * * *
65102970 CACACTAAGTGCAAATACATAGCCGAAGCTATTTTAATCTCG
1 CACACTAAGTGC-CATACATAGCCGAAGCTATCTCAA-ATAG
* *
65103012 AACACTAAGTGCAATACATAGCCGAAGCTATCTCAAATCA-
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAAT-AG
65103052 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
*
65103092 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATAG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
65103132 CACACTAAGTGCCATACATA
1 CACACTAAGTGCCATACATA
65103152 ACTGAATTGT
Statistics
Matches: 130, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 96 0.74
41 22 0.17
42 11 0.08
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
Found at i:65120144 original size:68 final size:68
Alignment explanation
Indices: 65120067--65120241 Score: 164
Period size: 68 Copynumber: 2.6 Consensus size: 68
65120057 CATCATGTGT
* ** * * *
65120067 ACAAAAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
65120129 ATGTAG
63 ATGTAG
* * *
65120135 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAATGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
65120200 ATGTAG
63 ATGTAG
*
65120206 ACAAGAGAGCTACGAG--ATAAAT-TGGCTAGGTCACAT
1 ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACAT
65120242 TGGTGGTACG
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
66 12 0.13
67 6 0.07
68 32 0.36
69 7 0.08
70 6 0.07
71 27 0.30
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:65125336 original size:40 final size:39
Alignment explanation
Indices: 65125280--65125355 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 39
65125270 ACGTAAATTA
65125280 TACCCTGATTGCACTTATACGACCCTATTTGTACTTTGG
1 TACCCTGATTGCACTTATACGACCCTATTTGTACTTTGG
* ** * *
65125319 TACCCTTGATTGTACTTATGTGCCCCTGTTTGTACTT
1 TACCC-TGATTGCACTTATACGACCCTATTTGTACTT
65125356 CGAACCCCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
39 5 0.16
40 26 0.84
ACGTcount: A:0.17, C:0.25, G:0.16, T:0.42
Consensus pattern (39 bp):
TACCCTGATTGCACTTATACGACCCTATTTGTACTTTGG
Found at i:65125351 original size:20 final size:19
Alignment explanation
Indices: 65125328--65125433 Score: 74
Period size: 20 Copynumber: 5.4 Consensus size: 19
65125318 GTACCCTTGA
*
65125328 TTGTACTTATGTGCCCCTGT
1 TTGTACTTACGTGCCCCT-T
**
65125348 TTGTACTT-CGAACCCCTT
1 TTGTACTTACGTGCCCCTT
*
65125366 TTGCACTTACGTGCCCCTAT
1 TTGTACTTACGTGCCCCT-T
*
65125386 TTGTACTT-CAGTACCCCTAAT
1 TTGTACTTAC-GTGCCCCT--T
* *
65125407 TT-CACTTACATGCCCCTAT
1 TTGTACTTACGTGCCCCT-T
65125426 TTGTACTT
1 TTGTACTT
65125434 CAGTACCGCA
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.12
19 18 0.26
20 37 0.54
21 5 0.07
ACGTcount: A:0.17, C:0.30, G:0.12, T:0.41
Consensus pattern (19 bp):
TTGTACTTACGTGCCCCTT
Found at i:65125437 original size:40 final size:39
Alignment explanation
Indices: 65125302--65125440 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 39
65125292 ACTTATACGA
** * *
65125302 CCCTATTTGTACTTTGGTACCCTTGATTGT-ACTTATGTGC
1 CCCTATTTGTACTTCAGTACCCCT-ATT-TCACTTACGTGC
* *
65125342 CCCTGTTTGTACTTC-GAACCCCT-TTTGCACTTACGTGC
1 CCCTATTTGTACTTCAGTACCCCTATTT-CACTTACGTGC
*
65125380 CCCTATTTGTACTTCAGTACCCCTAATTTCACTTACATGC
1 CCCTATTTGTACTTCAGTACCCCT-ATTTCACTTACGTGC
65125420 CCCTATTTGTACTTCAGTACC
1 CCCTATTTGTACTTCAGTACC
65125441 GCAGAATGCA
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
36 1 0.01
37 2 0.02
38 23 0.27
39 13 0.15
40 44 0.51
41 3 0.03
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.40
Consensus pattern (39 bp):
CCCTATTTGTACTTCAGTACCCCTATTTCACTTACGTGC
Found at i:65131432 original size:21 final size:21
Alignment explanation
Indices: 65131388--65131432 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
65131378 TTGCTTCTAC
* *
65131388 TGTTTAATCCTTGGGTTTGAA
1 TGTTTAATCCTTGGCTCTGAA
*
65131409 TGTTTAATCCTTGGCTCTGTA
1 TGTTTAATCCTTGGCTCTGAA
65131430 TGT
1 TGT
65131433 GTTCCAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.13, G:0.22, T:0.49
Consensus pattern (21 bp):
TGTTTAATCCTTGGCTCTGAA
Found at i:65140556 original size:18 final size:18
Alignment explanation
Indices: 65140533--65140568 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
65140523 GAGACCTACC
*
65140533 AACCAGAGACAAGTTTAA
1 AACCAGAAACAAGTTTAA
65140551 AACCAGAAACAAGTTTAA
1 AACCAGAAACAAGTTTAA
65140569 CTCAGGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.14, T:0.17
Consensus pattern (18 bp):
AACCAGAAACAAGTTTAA
Found at i:65148885 original size:6 final size:6
Alignment explanation
Indices: 65148867--65148896 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
65148857 GCAAATATAT
65148867 CATTTC TCATTTC CATTTC CATTTC CATTT
1 CATTTC -CATTTC CATTTC CATTTC CATTT
65148897 TAAGAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:65154216 original size:40 final size:40
Alignment explanation
Indices: 65154132--65154315 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
65154122 TTGAATGCTG
* * * *
65154132 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
65154171 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
65154212 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
65154252 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
65154292 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
65154316 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:65154269 original size:80 final size:81
Alignment explanation
Indices: 65154132--65154312 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
65154122 TTGAATGCTG
* * *
65154132 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
65154196 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
65154212 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
65154273 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
65154292 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
65154313 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:65154369 original size:39 final size:39
Alignment explanation
Indices: 65154132--65154374 Score: 122
Period size: 40 Copynumber: 6.1 Consensus size: 39
65154122 TTGAATGCTG
* ** *
65154132 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGAAC-GAGTGACTATA
* * ** * *
65154172 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTA-A
1 TCCGGGCTAAG-TCCCGAAGGCA-TTGAACGAGTGACTATA
* * **
65154211 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGAT-ACTA-A
1 -TCCGGGCTAAGTCCCGAAGG-CATTGAACGAG-TGACTATA
* ** ** *
65154251 TTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 -TCCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACT-ATA
* * *
65154292 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATA
*
65154331 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATA
65154370 TCCGG
1 TCCGG
65154375 TTAAATTCCG
Statistics
Matches: 166, Mismatches: 24, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
38 20 0.12
39 27 0.16
40 110 0.66
41 9 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATA
Found at i:65160488 original size:40 final size:40
Alignment explanation
Indices: 65160404--65160587 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
65160394 TTGAATGCTG
* * * *
65160404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
65160443 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
65160484 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
65160524 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
65160564 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
65160588 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:65160608 original size:39 final size:39
Alignment explanation
Indices: 65160484--65160634 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
65160474 AGTTATTAAT
* ** * * *
65160484 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
65160524 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
65160564 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
65160604 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
65160635 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:65194999 original size:13 final size:13
Alignment explanation
Indices: 65194981--65195006 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65194971 AACGAAGCAG
65194981 AACACGACCGTGC
1 AACACGACCGTGC
65194994 AACACGACCGTGC
1 AACACGACCGTGC
65195007 GCACCCATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AACACGACCGTGC
Found at i:65199442 original size:12 final size:13
Alignment explanation
Indices: 65199406--65199443 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
65199396 AAATATTTGA
65199406 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
65199419 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
65199433 CTTG-TCTTAAT
1 CTTGTTCTTAAT
65199444 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:65207770 original size:20 final size:20
Alignment explanation
Indices: 65207745--65207784 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
65207735 AATAAGGGAT
65207745 ACTTCATCAATCAAACTAAC
1 ACTTCATCAATCAAACTAAC
65207765 ACTTCATCAATCAAACTAAC
1 ACTTCATCAATCAAACTAAC
65207785 TCTAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (20 bp):
ACTTCATCAATCAAACTAAC
Found at i:65209610 original size:31 final size:30
Alignment explanation
Indices: 65209567--65209649 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
65209557 TCAATCTCAA
65209567 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTA-T
* * *** *
65209597 CATGTCACTGGGCCAAATTATTTTCATTAT
1 CATATCACTGGGCCGAAGCCTTTGCATTAT
*
65209627 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
65209650 ACTTAAATGG
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
30 22 0.55
31 18 0.45
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (30 bp):
CATATCACTGGGCCGAAGCCTTTGCATTAT
Found at i:65210851 original size:21 final size:22
Alignment explanation
Indices: 65210825--65210865 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
65210815 AAGAAAAAAA
65210825 AAGAAAA-GAC-TAATCCTAAAG
1 AAGAAAACGACATAA-CCTAAAG
65210846 AAGAAAACGACATAACCTAA
1 AAGAAAACGACATAACCTAA
65210866 GTCCCTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 8 0.44
23 3 0.17
ACGTcount: A:0.59, C:0.17, G:0.12, T:0.12
Consensus pattern (22 bp):
AAGAAAACGACATAACCTAAAG
Found at i:65217168 original size:30 final size:31
Alignment explanation
Indices: 65217105--65217175 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
65217095 TATATTGGGT
* * *
65217105 CGAAACCTTTGCATTATTCATGTCACTATGC
1 CGAAGCCTTTGCATTATTCATATCACTAGGC
*
65217136 CGAAGCCTTTTCATTA-TCATATCACTAGGC
1 CGAAGCCTTTGCATTATTCATATCACTAGGC
65217166 CGAAGCCTTT
1 CGAAGCCTTT
65217176 ACTGTAAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 22 0.61
31 14 0.39
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (31 bp):
CGAAGCCTTTGCATTATTCATATCACTAGGC
Found at i:65217416 original size:24 final size:24
Alignment explanation
Indices: 65217389--65217455 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
65217379 GCCTAGCCTC
65217389 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGC-AAGCCCT
* *
65217413 TTTTGATAAACTGGGGCAAGCCCT
1 TTTTAATAAACTAGGGCAAGCCCT
** *
65217437 TTTCGATAAACTGGGGCAA
1 TTTTAATAAACTAGGGCAA
65217456 TAACCCTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
24 31 0.79
25 8 0.21
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (24 bp):
TTTTAATAAACTAGGGCAAGCCCT
Found at i:65217430 original size:25 final size:25
Alignment explanation
Indices: 65217396--65217465 Score: 97
Period size: 24 Copynumber: 2.8 Consensus size: 25
65217386 CTCTTTTAAT
* *
65217396 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
65217421 AACTGGGGC-AAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
65217445 AACTGGGGCAATAACCCTTTT
1 AACTGGGGCAA-AGCCCTTTT
65217466 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.57
25 9 0.22
26 8 0.20
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:65225566 original size:20 final size:18
Alignment explanation
Indices: 65225533--65225574 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
65225523 AAACATCAAG
*
65225533 AATTAATTCTAATTAATT
1 AATTAATTCTAATTAAAT
65225551 AATTAATTTCCTAATTAAAT
1 AATTAA-TT-CTAATTAAAT
65225571 AATT
1 AATT
65225575 TTCTCAACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 13 0.62
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (18 bp):
AATTAATTCTAATTAAAT
Found at i:65227950 original size:40 final size:40
Alignment explanation
Indices: 65227849--65228060 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
65227839 TATTCGAATG
* * *
65227849 ATATCCGGGCTAAG-CGCCAAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGAC-CCGAAGGCATTTGTGC-GAGTGACT
* * *
65227890 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
65227930 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
65227970 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
65228010 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
65228049 ATATCC-GGCTAA
1 ATATCCGGGCTAA
65228061 ATCTCGAAGA
Statistics
Matches: 142, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
38 6 0.04
39 15 0.11
40 94 0.66
41 27 0.19
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:65236020 original size:40 final size:40
Alignment explanation
Indices: 65235919--65236139 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
65235909 TATTCGAATG
* * *
65235919 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
65235960 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
65236000 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
65236040 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
65236080 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
65236119 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
65236140 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 94 0.62
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:65237937 original size:74 final size:74
Alignment explanation
Indices: 65237815--65237963 Score: 264
Period size: 74 Copynumber: 2.0 Consensus size: 74
65237805 ATCCACTCAA
65237815 GATTAAGGTATGCCAAAATTTGAATGTCAGAATTTAATAAAACTATAAATGGATTCAGGCTCTAT
1 GATTAAGGTATGCCAAAATTTGAATGTCAGAATTTAATAAAACTATAAATGGATTCAGGCTCTAT
65237880 TCTTATTGG
66 TCTTATTGG
* *
65237889 GATTAAGGTATGCCAAAATTTGAATGTCAGAATTTAAT-AAAGTCATAAATGGATTCAGGGTCTA
1 GATTAAGGTATGCCAAAATTTGAATGTCAGAATTTAATAAAACT-ATAAATGGATTCAGGCTCTA
65237953 TTCTTATTGG
65 TTCTTATTGG
65237963 G
1 G
65237964 TCAATCCAAC
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
73 4 0.06
74 68 0.94
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (74 bp):
GATTAAGGTATGCCAAAATTTGAATGTCAGAATTTAATAAAACTATAAATGGATTCAGGCTCTAT
TCTTATTGG
Found at i:65241192 original size:21 final size:21
Alignment explanation
Indices: 65241153--65241192 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
65241143 TGAATTTAAT
*
65241153 GTCAATTTAATCTATTTCATA
1 GTCAATTTAATCTAATTCATA
65241174 GTCAATTTAAT-TCAATTCA
1 GTCAATTTAATCT-AATTCA
65241193 CATCCTAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (21 bp):
GTCAATTTAATCTAATTCATA
Found at i:65244509 original size:43 final size:43
Alignment explanation
Indices: 65244448--65244570 Score: 194
Period size: 43 Copynumber: 2.9 Consensus size: 43
65244438 ATCACATGTA
* * *
65244448 TCGCATCCATTATGAACTCGAACCACTCAATGAGCTTGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAATGAGCTCGGATGC
*
65244491 TCGCATCCATAATGAACTCGGACCACTCAATGATCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAATGAGCTCGGATGC
*
65244534 TCGCATCCATAATGAACT-GGACCACTCAATAAGCTCG
1 TCGCATCCATAATGAACTCGGACCACTCAATGAGCTCG
65244571 AACGCCACAC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 17 0.23
43 57 0.77
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCACTCAATGAGCTCGGATGC
Found at i:65257335 original size:47 final size:47
Alignment explanation
Indices: 65257284--65257430 Score: 258
Period size: 47 Copynumber: 3.1 Consensus size: 47
65257274 GATTTTATGA
*
65257284 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
65257331 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
65257378 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
65257425 GATGAA
1 GATGAA
65257431 CGTGGAAGTA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 95 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:65257460 original size:94 final size:94
Alignment explanation
Indices: 65257284--65257470 Score: 252
Period size: 94 Copynumber: 2.0 Consensus size: 94
65257274 GATTTTATGA
* * *
65257284 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATACGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATACA
*
65257349 TATGTGTGATAAGGCCGAATGGCCAATGT
66 TATGTGTGAGAAGGCCGAATGGCCAATGT
* * *
65257378 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAAGTATA
1 GATGAATGTGAACATGCATATACGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAA-CATA
* * *
65257443 TATATGTG-GCGAA-GCCGAATGGCTAATG
64 CATATGTGTGAGAAGGCCGAATGGCCAATG
65257471 CGAAATGTGT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
94 66 0.81
95 6 0.07
96 9 0.11
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATACGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATACA
TATGTGTGAGAAGGCCGAATGGCCAATGT
Found at i:65257463 original size:47 final size:46
Alignment explanation
Indices: 65257284--65257470 Score: 200
Period size: 47 Copynumber: 4.0 Consensus size: 46
65257274 GATTTTATGA
*
65257284 GATGAATGTGAACATGCATATACGT-GATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACAT--ATATATGTGGATAAGGCCGAATGGCCAATGT
**
65257331 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATATATATGTG-GATAAGGCCGAATGGCCAATGT
**
65257378 GATGAATGTGAACATGCATATATGT-GATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACAT--ATATATGTGGATAAGGCCGAATGGCCAATGT
* * ** *
65257425 GATGAACGTGGAAGTATATATATGTGGCGAA-GCCGAATGGCTAATG
1 GATGAATGT-GAA-CATATATATGTGGATAAGGCCGAATGGCCAATG
65257471 CGAAATGTGT
Statistics
Matches: 119, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
45 5 0.04
47 100 0.84
48 6 0.05
49 8 0.07
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (46 bp):
GATGAATGTGAACATATATATGTGGATAAGGCCGAATGGCCAATGT
Found at i:65257508 original size:46 final size:46
Alignment explanation
Indices: 65257458--65257631 Score: 260
Period size: 46 Copynumber: 3.8 Consensus size: 46
65257448 GTGGCGAAGC
*
65257458 CGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAGT
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
*
65257504 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGC
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
*
65257550 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGATAAA-T
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
* * ** *
65257595 CTGAATGGCTAATGTGAGATATGTATGAGATGTATAT
1 C-GAATGGCTAATGCGAAACGTGTATGAGATGGATAT
65257632 ATATATATTG
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 117 0.99
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.26
Consensus pattern (46 bp):
CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
Found at i:65259168 original size:40 final size:40
Alignment explanation
Indices: 65259113--65259306 Score: 298
Period size: 40 Copynumber: 4.8 Consensus size: 40
65259103 ATATATCTGA
65259113 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
65259153 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTATATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
65259193 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* * **
65259233 GCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* * **
65259273 GCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGT
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
65259307 GTAATCAGGC
Statistics
Matches: 140, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
Found at i:65259237 original size:80 final size:80
Alignment explanation
Indices: 65259104--65259306 Score: 334
Period size: 80 Copynumber: 2.5 Consensus size: 80
65259094 GAGAGTTATA
* *
65259104 TATATCTGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
65259169 CATTCGTGCTAGTGT
66 CATTCGTGCTAGTGT
65259184 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
*
65259249 CATTCGTGCTGGTGT
66 CATTCGTGCTAGTGT
* * * **
65259264 TACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
65259307 GTAATCAGGC
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 115 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTAGTGT
Found at i:65259511 original size:28 final size:28
Alignment explanation
Indices: 65259478--65259579 Score: 102
Period size: 28 Copynumber: 3.7 Consensus size: 28
65259468 AATGAATATA
65259478 GGCACTATGTGTGCGAGATCGGTTAGTG
1 GGCACTATGTGTGCGAGATCGGTTAGTG
* * **
65259506 GGCACTGTGTGTGCGA-ATTC-TTTAACCG
1 GGCACTATGTGTGCGAGA-TCGGTT-AGTG
* *
65259534 AGCACTATGTGTGCAAGATCGGTTAGTG
1 GGCACTATGTGTGCGAGATCGGTTAGTG
*
65259562 GGAACTATGTGTGC-AGAT
1 GGCACTATGTGTGCGAGAT
65259580 TTCGTTTCAT
Statistics
Matches: 58, Mismatches: 12, Indels: 9
0.73 0.15 0.11
Matches are distributed among these distances:
27 7 0.12
28 48 0.83
29 3 0.05
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (28 bp):
GGCACTATGTGTGCGAGATCGGTTAGTG
Found at i:65262907 original size:47 final size:47
Alignment explanation
Indices: 65262856--65263002 Score: 258
Period size: 47 Copynumber: 3.1 Consensus size: 47
65262846 GATTTTATGA
*
65262856 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
65262903 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
65262950 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
65262997 GATGAA
1 GATGAA
65263003 CGTGGAATAT
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 95 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:65263077 original size:46 final size:45
Alignment explanation
Indices: 65263027--65263198 Score: 265
Period size: 46 Copynumber: 3.8 Consensus size: 45
65263017 GTGGCGAAGC
*
65263027 CGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAG
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG
65263072 TCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG
1 -CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG
65263118 CCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA-
1 -CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG
* * ** *
65263163 CGAATGGCTAATGTGAGATATGTATGAGATGTATAT
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATAT
65263199 ATATATTGTG
Statistics
Matches: 119, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 31 0.26
46 88 0.74
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (45 bp):
CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG
Found at i:65265711 original size:47 final size:47
Alignment explanation
Indices: 65265660--65266037 Score: 580
Period size: 47 Copynumber: 8.0 Consensus size: 47
65265650 GATTTTATGA
65265660 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
65265707 GATGAATGTGAACATTCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
65265754 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
65265801 GATGAATGTGGACATGCATATAGGTGATAAAGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
65265848 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
65265895 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
65265942 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** *
65265989 GATGAACGTGGAA-GTGTATATATGTGGCGAA-GCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGT-GATAAGGCCGAATGGCCAATGT
65266036 GA
1 GA
65266038 AATGTGTATG
Statistics
Matches: 305, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 299 0.98
48 6 0.02
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:65266075 original size:46 final size:46
Alignment explanation
Indices: 65266018--65266195 Score: 257
Period size: 46 Copynumber: 3.9 Consensus size: 46
65266008 ATATGTGGCG
* **
65266018 AAGCCGAATGGCTAATGTGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* *
65266064 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* *
65266110 AAGCCAAATGGCTAATGCAAAACATGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* * * *
65266156 AAGCCGAATGGCTAATGTGAGATATGTATGAGATGTATAT
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATAT
65266196 ATATATTGTG
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.37, C:0.08, G:0.30, T:0.25
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
Found at i:65270526 original size:21 final size:21
Alignment explanation
Indices: 65270500--65270545 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
65270490 TGCAACATGA
**
65270500 GCATGTCTTTGGACCACACGG
1 GCATGTCCCTGGACCACACGG
*
65270521 GCATGTCCCTGGACCACATGG
1 GCATGTCCCTGGACCACACGG
65270542 GCAT
1 GCAT
65270546 ATGTTCCCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (21 bp):
GCATGTCCCTGGACCACACGG
Found at i:65279180 original size:103 final size:104
Alignment explanation
Indices: 65279001--65279253 Score: 418
Period size: 103 Copynumber: 2.4 Consensus size: 104
65278991 GACCGTTATT
* * * *
65279001 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
65279066 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
65279104 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
65279169 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
65279208 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCAC
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCAC
65279254 ACACAACCCC
Statistics
Matches: 139, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
103 83 0.60
104 56 0.40
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:65286199 original size:103 final size:104
Alignment explanation
Indices: 65286020--65286284 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
65286010 AACCGTTATT
* * * *
65286020 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
65286085 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65286123 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
65286187 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
65286227 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
65286285 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:65293945 original size:178 final size:178
Alignment explanation
Indices: 65293640--65293970 Score: 590
Period size: 178 Copynumber: 1.9 Consensus size: 178
65293630 CTCCGAACTT
** *
65293640 AAGTTGATTTGGTGATGTATTGAGCTCGTCCTGGCTTGGTTTCGATTTATCAGGTGTTCTCGATT
1 AAGTTGATTTGGTGATGTATTGAGCTCGTCCTGGCTTAATTTCGATTTATCAGGTGTTCTCAATT
* *
65293705 TCTGTATCCGCCATTCATCTAGTTTCTCGATTTGTAGCCTTCGTTCTTTATAGATAGGTCCTTTG
66 TCTGTATCCGCCATTCATCTAGTTTCTCGATTTGTAGCCTTCATTCTTCATAGATAGGTCCTTTG
65293770 TTGTTGCTTGAACATGGCTTGTGCGGTTCTTCAAACTTATTTCCTACA
131 TTGTTGCTTGAACATGGCTTGTGCGGTTCTTCAAACTTATTTCCTACA
*
65293818 AAGTTGATTTGGTGATGTATTGAGCTCGTCCTGGCTTAATTTCGGTTTATCAGGTGTTCTCAATT
1 AAGTTGATTTGGTGATGTATTGAGCTCGTCCTGGCTTAATTTCGATTTATCAGGTGTTCTCAATT
*
65293883 TCTGTATCCGCCATTCATCTAGTTTCTCGATTTGTAGCCTTCATTCTTCATAGATTGGTCCTTTG
66 TCTGTATCCGCCATTCATCTAGTTTCTCGATTTGTAGCCTTCATTCTTCATAGATAGGTCCTTTG
*
65293948 TTGTTGCTTGAGCATGGCTTGTG
131 TTGTTGCTTGAACATGGCTTGTG
65293971 TAGGTTGCAC
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
178 145 1.00
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.44
Consensus pattern (178 bp):
AAGTTGATTTGGTGATGTATTGAGCTCGTCCTGGCTTAATTTCGATTTATCAGGTGTTCTCAATT
TCTGTATCCGCCATTCATCTAGTTTCTCGATTTGTAGCCTTCATTCTTCATAGATAGGTCCTTTG
TTGTTGCTTGAACATGGCTTGTGCGGTTCTTCAAACTTATTTCCTACA
Found at i:65296092 original size:19 final size:19
Alignment explanation
Indices: 65296055--65296092 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
65296045 AACTGTTAGA
*
65296055 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
65296074 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
65296093 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:65299547 original size:30 final size:30
Alignment explanation
Indices: 65299513--65299573 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
65299503 ATTCCCGAGC
*
65299513 TTAGGGGCAAAAGTGTAATTATGCAAAAGT
1 TTAGGGGCAAAAATGTAATTATGCAAAAGT
* *
65299543 TTAGGGGCAAAAATGTAATTTTGCCAAAGT
1 TTAGGGGCAAAAATGTAATTATGCAAAAGT
65299573 T
1 T
65299574 CGTATTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TTAGGGGCAAAAATGTAATTATGCAAAAGT
Found at i:65307951 original size:12 final size:12
Alignment explanation
Indices: 65307934--65307959 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
65307924 ACAGGCTTGG
65307934 CATGGCCTAGCA
1 CATGGCCTAGCA
65307946 CATGGCCTAGCA
1 CATGGCCTAGCA
65307958 CA
1 CA
65307960 CGGGCATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CATGGCCTAGCA
Found at i:65323502 original size:49 final size:49
Alignment explanation
Indices: 65323430--65323617 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
65323420 TGAGGTCACG
* *
65323430 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * * * * *
65323479 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCGCA
* * *
65323530 TGTGTAGTACCAAGTGCAGGCTACTATGTGTACCAAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
*
65323579 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
65323618 GCTTCGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 76 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:65323602 original size:100 final size:100
Alignment explanation
Indices: 65323425--65323612 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
65323415 TATTGTGAGG
* **
65323425 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACT
*
65323490 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
66 AAGTGCAAGCTACTATGCGTACCCGAAAACTATGA
* *
65323525 TCACGTGTGTAGTACCAAGTGCAGGCTACTATGTGTACCAAATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACT
*
65323590 AAGTGCAAGCTACTATGTGTACC
66 AAGTGCAAGCTACTATGCGTACC
65323613 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACT
AAGTGCAAGCTACTATGCGTACCCGAAAACTATGA
Found at i:65325829 original size:46 final size:46
Alignment explanation
Indices: 65325762--65325933 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
65325752 AACCCGTCCC
*
65325762 TAAGTGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCGCATCCA
*
65325808 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
65325856 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
65325901 TAGGTGAACTTGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
65325934 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 55 0.53
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:65325876 original size:93 final size:93
Alignment explanation
Indices: 65325767--65325937 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
65325757 GTCCCTAAGT
* *
65325767 GAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65325831 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
65325860 GAACTC-AGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTTGGACTCAACTCA
1 GAACTCGA-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65325924 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
65325938 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65334751 original size:40 final size:40
Alignment explanation
Indices: 65334633--65334756 Score: 160
Period size: 40 Copynumber: 3.1 Consensus size: 40
65334623 CGGATGATAA
* * * *
65334633 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
65334673 CCGGGCTATGACCCGAAGGCATTTATGCTAG-CGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
65334713 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
65334753 CCGG
1 CCGG
65334757 TTAAATCCCG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 68 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:65338540 original size:46 final size:45
Alignment explanation
Indices: 65338473--65338644 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
65338463 AACCCGCCCC
*
65338473 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
* * *
65338519 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTATCCA
* * * *
65338565 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
*
65338612 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
65338645 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
45 2 0.02
46 65 0.62
47 34 0.32
48 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCA
Found at i:65338590 original size:93 final size:93
Alignment explanation
Indices: 65338478--65338648 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65338468 GCCCCTAAGT
* * *
65338478 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65338543 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
65338571 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65338636 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65338649 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65339401 original size:11 final size:12
Alignment explanation
Indices: 65339376--65339406 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
65339366 CAATCATATC
65339376 ATAATTATCAAA
1 ATAATTATCAAA
65339388 ATAATTAT-AAA
1 ATAATTATCAAA
65339399 ATAATTAT
1 ATAATTAT
65339407 TTCTATCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATTATCAAA
Found at i:65357812 original size:24 final size:24
Alignment explanation
Indices: 65357785--65357831 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
65357775 ATATGTTGAC
65357785 ATTCAAATCAGCACACATAGTGCT
1 ATTCAAATCAGCACACATAGTGCT
* *
65357809 ATTCAACTCCGCACACATAGTGC
1 ATTCAAATCAGCACACATAGTGC
65357832 CATACTACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (24 bp):
ATTCAAATCAGCACACATAGTGCT
Found at i:65357865 original size:24 final size:24
Alignment explanation
Indices: 65357795--65357857 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
65357785 ATTCAAATCA
* * * *
65357795 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACTACACC
65357819 GCACACATAGTGCCATACTACACC
1 GCACACATAGTGCCATACTACACC
65357843 GCACACATAGTGCCA
1 GCACACATAGTGCCA
65357858 ATGTACACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.32, C:0.35, G:0.14, T:0.19
Consensus pattern (24 bp):
GCACACATAGTGCCATACTACACC
Found at i:65365779 original size:24 final size:23
Alignment explanation
Indices: 65365752--65365797 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
65365742 ATATGTTGAC
65365752 ATTCAAATCAGCACACATAGTGCT
1 ATTCAAATCAGC-CACATAGTGCT
* *
65365776 ATTCAACTCCGCCACATAGTGC
1 ATTCAAATCAGCCACATAGTGC
65365798 CATACTACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (23 bp):
ATTCAAATCAGCCACATAGTGCT
Found at i:65365820 original size:24 final size:24
Alignment explanation
Indices: 65365762--65365823 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
65365752 ATTCAAATCA
* * *
65365762 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACAACACC
*
65365786 GC-CACATAGTGCCATACTACACC
1 GCACACATAGTGCCATACAACACC
65365809 GCACACATAGTGCCA
1 GCACACATAGTGCCA
65365824 ATGTACACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 19 0.58
24 14 0.42
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.19
Consensus pattern (24 bp):
GCACACATAGTGCCATACAACACC
Found at i:65371815 original size:42 final size:42
Alignment explanation
Indices: 65371756--65371867 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
65371746 CAACGCCAAC
* *
65371756 GTCCCAGACGTGGTCTTACATGCAATCAAATATGATGCCACT
1 GTCCCAGACGTGGTCTTACATGAAATCAAATACGATGCCACT
65371798 GTCCCAGACAG-GGTCTTACATGAAATCAAATACGATGCCACT
1 GTCCCAGAC-GTGGTCTTACATGAAATCAAATACGATGCCACT
* *
65371840 GTCCTAGACGTGGTCTTACACGAAATCA
1 GTCCCAGACGTGGTCTTACATGAAATCA
65371868 CATATCGAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACATGAAATCAAATACGATGCCACT
Found at i:65374181 original size:18 final size:20
Alignment explanation
Indices: 65374145--65374191 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
65374135 AGTTGTAAGT
65374145 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
65374165 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
65374184 ATGATATA
1 AT-ATATA
65374192 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:65375804 original size:44 final size:45
Alignment explanation
Indices: 65375750--65375865 Score: 137
Period size: 44 Copynumber: 2.6 Consensus size: 45
65375740 TATGCGTGCT
65375750 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-GGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCACAACTCTGTAGGCC
* * *** *
65375794 GATGCGTGTCCCAGACACGTCTTACACTGGTTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGCACAACTCTGT--AGGCC
65375841 GATGCATGTCCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
65375866 TCTGGCAATC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
43 6 0.10
44 27 0.45
47 27 0.45
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGCACAACTCTGTAGGCC
Found at i:65386910 original size:19 final size:19
Alignment explanation
Indices: 65386888--65386955 Score: 122
Period size: 19 Copynumber: 3.7 Consensus size: 19
65386878 TCATATATTC
65386888 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
65386907 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
65386924 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
65386943 AAGATTGCATATC
1 AAGATTGCATATC
65386956 CTTAAAGATG
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
17 17 0.36
19 30 0.64
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:65386964 original size:36 final size:34
Alignment explanation
Indices: 65386888--65386955 Score: 111
Period size: 36 Copynumber: 2.0 Consensus size: 34
65386878 TCATATATTC
65386888 AAGATTGCATATCATATCTAAGATTGTATCATATCT
1 AAGATTGCATATCATATCTAAGATTG--TCATATCT
65386924 AAGATTGCATATCATATCTAAGATTG-CATATC
1 AAGATTGCATATCATATCTAAGATTGTCATATC
65386956 CTTAAAGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 6 0.19
36 26 0.81
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (34 bp):
AAGATTGCATATCATATCTAAGATTGTCATATCT
Done.