Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 191 of 311
Found at i:65730957 original size:46 final size:47
Alignment explanation
Indices: 65730890--65731061 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 47
65730880 AACCCGCCGC
* * *
65730890 TAAGTGAACTCAGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACGTTCGCATCCA
* * * *
65730936 TAAGTGAACTCGGACTCAACTCAACAAGTTCAGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG--GAC--GTTCGCATCCA
* * *
65730984 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACGTTCGCATCCA
65731029 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG
65731062 ATGCTCAACG
Statistics
Matches: 101, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACGTTCGCATCCA
Found at i:65731023 original size:93 final size:93
Alignment explanation
Indices: 65730895--65731065 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
65730885 GCCGCTAAGT
* *
65730895 GAACTCAGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65730960 CAAGTTCAGATGCCTAGTTACATTTCAC
66 CAAGTTCAGATGCCTAGTTACATTTCAC
* *
65730988 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
65731052 ACGAGTTCAGATGC
65 ACAAGTTCAGATGC
65731066 TCAACGATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCAGATGCCTAGTTACATTTCAC
Found at i:65731081 original size:46 final size:46
Alignment explanation
Indices: 65730889--65731081 Score: 137
Period size: 46 Copynumber: 4.2 Consensus size: 46
65730879 TAACCCGCCG
* * * ** * *
65730889 CTAAGTGAACTCAGACTCAACTCAATGAGCTCAGGCGTTC-GCATC
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACATC
*
65730934 CATAAGTGAACTCGGACTCAACTCAACAAGTTCAGATGC-CTAGTTACAT-
1 C-TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTC-A---ACATC
* * * * *** *
65730983 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATC
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACATC
65731027 CATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACGATC
1 C-TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAAC-ATC
65731075 CT-AGTGA
1 CTAAGTGA
65731082 CATGTCACTT
Statistics
Matches: 111, Mismatches: 25, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
43 3 0.03
45 4 0.04
46 65 0.59
47 29 0.26
48 7 0.06
50 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACATC
Found at i:65736687 original size:42 final size:43
Alignment explanation
Indices: 65736587--65736738 Score: 179
Period size: 43 Copynumber: 3.5 Consensus size: 43
65736577 AGATCGTACA
*
65736587 ATGCCAACATCCTAGACGTGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAAATA-CG
65736630 ATGCC-ACTATCCTAGACAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-ATCCTAGAC-GTGGTCTTACACGTAAATCAAATACG
*
65736672 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCA-AA-TACG
* * *
65736716 ATGCCAACGTCCCAGACATGGTC
1 ATGCCAACATCCTAGACGTGGTC
65736739 ATAACACATA
Statistics
Matches: 97, Mismatches: 4, Indels: 15
0.84 0.03 0.13
Matches are distributed among these distances:
41 1 0.01
42 31 0.32
43 38 0.39
44 26 0.27
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAAATACG
Found at i:65737923 original size:17 final size:17
Alignment explanation
Indices: 65737901--65737953 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
65737891 AAAAATAATA
65737901 TTAAAATATTTTTTAAC
1 TTAAAATATTTTTTAAC
*
65737918 TTAAAATA----AT-A-
1 TTAAAATATTTTTTAAC
65737929 TTAAAATATTTTTTAAC
1 TTAAAATATTTTTTAAC
65737946 TTAAAATA
1 TTAAAATA
65737954 ATATTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
11 8 0.29
12 1 0.04
13 1 0.04
15 1 0.04
16 1 0.04
17 16 0.57
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAAAATATTTTTTAAC
Found at i:65737928 original size:28 final size:28
Alignment explanation
Indices: 65737892--65737970 Score: 158
Period size: 28 Copynumber: 2.8 Consensus size: 28
65737882 ATAAGCATGA
65737892 AAAATAATATTAAAATATTTTTTAACTT
1 AAAATAATATTAAAATATTTTTTAACTT
65737920 AAAATAATATTAAAATATTTTTTAACTT
1 AAAATAATATTAAAATATTTTTTAACTT
65737948 AAAATAATATTAAAATATTTTTT
1 AAAATAATATTAAAATATTTTTT
65737971 TGACTTAGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (28 bp):
AAAATAATATTAAAATATTTTTTAACTT
Found at i:65739243 original size:13 final size:13
Alignment explanation
Indices: 65739227--65739259 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
65739217 TTTAATTAAA
*
65739227 TTAGTTAATTAGT
1 TTAGATAATTAGT
65739240 TTAGATAATTAGT
1 TTAGATAATTAGT
65739253 TTA-ATAA
1 TTAGATAA
65739260 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:65743072 original size:74 final size:75
Alignment explanation
Indices: 65742936--65743081 Score: 249
Period size: 75 Copynumber: 2.0 Consensus size: 75
65742926 GAGCGAACCA
* * * *
65742936 GATGAGTTGGTGAGGGGGGAAGTGATTAAGACTTAATGCCAGGATGTGCCAAAGTTGGTGATCGT
1 GATGAATTGGTGAGGGGGGAAGTGATTAAGACTCAATGCCAAGATGTGCCAAAGTTGGTGATCAT
65743001 GGACTTCGAC
66 GGACTTCGAC
65743011 GATGAATTGGTGAGGGGGGAAGTGATTAAGACTCAATG-CAAGATGTGCCAAAGTTGGTGATCAT
1 GATGAATTGGTGAGGGGGGAAGTGATTAAGACTCAATGCCAAGATGTGCCAAAGTTGGTGATCAT
65743075 GGACTTC
66 GGACTTC
65743082 TATGCGTTCT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
74 31 0.46
75 36 0.54
ACGTcount: A:0.27, C:0.12, G:0.36, T:0.25
Consensus pattern (75 bp):
GATGAATTGGTGAGGGGGGAAGTGATTAAGACTCAATGCCAAGATGTGCCAAAGTTGGTGATCAT
GGACTTCGAC
Found at i:65744003 original size:22 final size:22
Alignment explanation
Indices: 65743942--65743995 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
65743932 CCTTTAGTCA
65743942 TCCTGTCTACGGCGTTGATTTG
1 TCCTGTCTACGGCGTTGATTTG
65743964 TCCTGTCTACGGCGTTGATTTG
1 TCCTGTCTACGGCGTTGATTTG
65743986 TCCTGTCTAC
1 TCCTGTCTAC
65743996 AGCATTGACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.41
Consensus pattern (22 bp):
TCCTGTCTACGGCGTTGATTTG
Found at i:65744512 original size:24 final size:24
Alignment explanation
Indices: 65744447--65744517 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
65744437 CTGTCAGGAG
* *
65744447 AGGATTTAGGAGTTTATAAAGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
65744471 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
65744495 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
65744518 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.35, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:65745966 original size:27 final size:26
Alignment explanation
Indices: 65745926--65746037 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
65745916 AGGAAGCGTC
*
65745926 CTGGTGGCTATGCCACCATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
* *
65745953 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
65745980 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
65746008 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
65746034 CTGG
1 CTGG
65746038 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 17 0.23
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:65746032 original size:54 final size:54
Alignment explanation
Indices: 65745926--65746037 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
65745916 AGGAAGCGTC
* *
65745926 CTGGTGGCTATGCCACCATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACCATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
65745980 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACCATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
65746034 CTGG
1 CTGG
65746038 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACCATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:65751727 original size:54 final size:54
Alignment explanation
Indices: 65751622--65751730 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 54
65751612 AAGCGTCCTA
* * * *
65751622 GTGGCTATGCCACCATTATCTGATCTGATGGCTCTGCCATATATTTTTGTTCTG
1 GTGGCTATGCCACCATTATCTGATCTGATGACTCTGCCACATATATCTGTTCTG
* * * *
65751676 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 GTGGCTATGCCACCATTATCTG-ATCTGATGACTCTGCCACATATATCTGTTCTG
65751730 G
1 G
65751731 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 30 0.65
55 16 0.35
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACCATTATCTGATCTGATGACTCTGCCACATATATCTGTTCTG
Found at i:65756269 original size:25 final size:23
Alignment explanation
Indices: 65756224--65756277 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
65756214 CACTACCAAT
65756224 CAGGATGCTCGCAGGAACTATATAA
1 CAGGATGCTCGCAGGAAC--TATAA
* *
65756249 CAGGATGCTTG-AGAGAGCTATAA
1 CAGGATGCTCGCAG-GAACTATAA
65756272 CAGGAT
1 CAGGAT
65756278 TGATCGTTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (23 bp):
CAGGATGCTCGCAGGAACTATAA
Found at i:65757667 original size:25 final size:25
Alignment explanation
Indices: 65757616--65757841 Score: 167
Period size: 25 Copynumber: 9.1 Consensus size: 25
65757606 ACACGCCATG
* **
65757616 AAGGCTTTCCT-GAGAATTCGCTGCA
1 AAGGCTTT-CTAGAGAATTCACCACA
* *
65757641 AAGGCTTTCGAGAGAATTTACCACA
1 AAGGCTTTCTAGAGAATTCACCACA
* *
65757666 AAGCCTTTCTAGAGAATTTACCACA
1 AAGGCTTTCTAGAGAATTCACCACA
* * *
65757691 AAGCCTTTCTAAAG-ATTCACCATA
1 AAGGCTTTCTAGAGAATTCACCACA
* *
65757715 AAAGCTTTCCAGAGAATTCACCACA
1 AAGGCTTTCTAGAGAATTCACCACA
* *
65757740 AAGGCTTTTTAGA-AGATTCGCCACA
1 AAGGCTTTCTAGAGA-ATTCACCACA
* ** *
65757765 AAGGATTTAC-AGAGAATTTTCCATA
1 AAGGCTTT-CTAGAGAATTCACCACA
** *
65757790 AAGGCTTT-TCAGA-AGATTCATGATA
1 AAGGCTTTCT-AGAGA-ATTCACCACA
*
65757815 AAGGCTTTCCAGAGAATTCACCACA
1 AAGGCTTTCTAGAGAATTCACCACA
65757840 AA
1 AA
65757842 TACTTTTTAG
Statistics
Matches: 158, Mismatches: 33, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
24 21 0.13
25 135 0.85
26 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (25 bp):
AAGGCTTTCTAGAGAATTCACCACA
Found at i:65757781 original size:50 final size:50
Alignment explanation
Indices: 65757611--65757853 Score: 220
Period size: 50 Copynumber: 4.9 Consensus size: 50
65757601 AAATAACACG
* * * ** ** *
65757611 CCATGAAGGCTTTCCTGAGAATTCGCTGCAAAGGCTTTCGAG-AGAATTTA
1 CCATAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAG-ATTCA
* * * * * *
65757661 CCACAAAGCCTTTCTAGAGAATTTACCACAAAGCCTTTCTA-AAGATTCA
1 CCATAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCA
* *
65757710 CCATAAAAGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCG
1 CCATAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCA
* * * ** * *
65757760 CCACAAAGGATTTACAGAGAATTTTCCATAAAGGCTTTTCAGAAGATTCA
1 CCATAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCA
** **
65757810 TGATAAAGGCTTTCCAGAGAATTCACCACAAATACTTTTTAGAA
1 CCATAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAA
65757854 ATTTGTGTTT
Statistics
Matches: 151, Mismatches: 40, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
49 38 0.25
50 113 0.75
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (50 bp):
CCATAAAGGCTTTCCAGAGAATTCACCACAAAGGCTTTTTAGAAGATTCA
Found at i:65769091 original size:46 final size:47
Alignment explanation
Indices: 65769005--65769225 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 47
65768995 GGGGTAAGGC
*
65769005 GCCGATGCATTGTCCTAGACATGGTCTTACACT-GAC--ACATCTTGTA-
1 GCCGATGCA-TGTCCCAGACAT-GTCTTACACTAG-CTTACATCTTGTAG
* *
65769051 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGTAG
* * * ** *
65769097 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT-C-GCCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTTGTAG
* * * * ** *
65769143 GCTGAGGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAATAT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTTGTAG
*
65769191 GTCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
65769226 CACACAAGTG
Statistics
Matches: 141, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 70 0.50
47 26 0.18
48 19 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGTAG
Found at i:65771494 original size:40 final size:40
Alignment explanation
Indices: 65771434--65771651 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
65771424 CGGATGATAA
* *
65771434 CCGGCCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
65771474 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65771514 CCGGGCTCAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
65771554 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
65771594 CTGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
65771634 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65771652 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 17 0.10
40 151 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65779478 original size:40 final size:40
Alignment explanation
Indices: 65779423--65779600 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
65779413 TCGATGATAA
65779423 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
65779463 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
65779503 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
65779543 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
65779583 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65779601 TACTTGGTTT
Statistics
Matches: 133, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 18 0.14
40 115 0.86
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65783067 original size:24 final size:26
Alignment explanation
Indices: 65783040--65783089 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
65783030 CTAAGGAACC
65783040 TATA-AAAA-TGTAAAAT-GAATAATA
1 TATACAAAAGTGTAAAATAG-ATAATA
*
65783064 TATACAAAAGTTTAAAATAGATAATA
1 TATACAAAAGTGTAAAATAGATAATA
65783090 GATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 4 0.18
25 4 0.18
26 13 0.59
27 1 0.05
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (26 bp):
TATACAAAAGTGTAAAATAGATAATA
Found at i:65784183 original size:14 final size:14
Alignment explanation
Indices: 65784166--65784194 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65784156 AATTTTATAA
65784166 ATAAAAATAAAATG
1 ATAAAAATAAAATG
65784180 ATAAAAATAAAATG
1 ATAAAAATAAAATG
65784194 A
1 A
65784195 AATAAAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (14 bp):
ATAAAAATAAAATG
Found at i:65785176 original size:45 final size:46
Alignment explanation
Indices: 65785116--65785501 Score: 226
Period size: 45 Copynumber: 8.4 Consensus size: 46
65785106 CTGCTCTACC
* * * *
65785116 GCAACTTTAGAGAGATAAGA-TTTGCTATCTTGAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCCACT
* * *
65785161 GCAACTTGAGGGAGATAAGACTCTG-TAATCTGT-AGGTTTGATCTACTCTACT
1 GCAACTTCAGGGAGATAAGACTTTGCT-ATCT-TCA------ATCTACTCCACT
* * * * **
65785213 GTAACTTCAGAGAGATAAGATTTAGTGCTGGTAGCTTCAATCTGTTCCACT
1 GCAACTTCAGGGAGATAAGACTT--TGC---TATCTTCAATCTACTCCACT
** * * * *
65785264 GTTAGTTCAGGGAAATGAGA-TTTGCTATCTTCAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCCACT
* * *
65785309 ACAACTTCAGGGAGATAAGAC-TTG-T-GCTTCAACCTAC-CCTACT
1 GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCC-ACT
* * * ** *
65785352 GCAACTTCAGGGGGATAA-AGTTTGCTATTTTCGTTCTATTCCACT
1 GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCCACT
* * *
65785397 GCAACTTCAGGGAGATAAGA-TCTG-TAACTCCAATCTACTCCACT
1 GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCCACT
* * *
65785441 GTAACTTTAGGGAGATAAGACTTAGC--T-TT-AATCTACTCCACT
1 GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCCACT
*
65785483 ACAACTTCAGGGAGATAAG
1 GCAACTTCAGGGAGATAAG
65785502 GCACTGTAAT
Statistics
Matches: 258, Mismatches: 58, Indels: 53
0.70 0.16 0.14
Matches are distributed among these distances:
42 32 0.12
43 32 0.12
44 34 0.13
45 83 0.32
46 11 0.04
47 1 0.00
48 3 0.01
50 2 0.01
51 24 0.09
52 28 0.11
54 2 0.01
56 1 0.00
57 4 0.02
58 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (46 bp):
GCAACTTCAGGGAGATAAGACTTTGCTATCTTCAATCTACTCCACT
Found at i:65785453 original size:44 final size:42
Alignment explanation
Indices: 65785298--65785501 Score: 158
Period size: 44 Copynumber: 4.7 Consensus size: 42
65785288 CTATCTTCAG
* ** *
65785298 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTGCTTCAA
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACTT-AACTCCAA
* * ** ** * **
65785341 CCTAC-CCTACTGCAACTTCAGGGGGATAAAGTTTGCTATTTTCGT
1 TCTACTCC-ACTGCAACTTCAGGGAGAT-AAGACT--TAACTCCAA
*
65785386 TCTATTCCACTGCAACTTCAGGGAGATAAGATCTGTAACTCCAA
1 TCTACTCCACTGCAACTTCAGGGAGATAAGA-CT-TAACTCCAA
* * * **
65785430 TCTACTCCACTGTAACTTTAGGGAGATAAGACTTAGCTTTAA
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACTTAACTCCAA
*
65785472 TCTACTCCACTACAACTTCAGGGAGATAAG
1 TCTACTCCACTGCAACTTCAGGGAGATAAG
65785502 GCACTGTAAT
Statistics
Matches: 125, Mismatches: 30, Indels: 13
0.74 0.18 0.08
Matches are distributed among these distances:
42 35 0.28
43 23 0.18
44 39 0.31
45 25 0.20
46 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
TCTACTCCACTGCAACTTCAGGGAGATAAGACTTAACTCCAA
Found at i:65789390 original size:25 final size:25
Alignment explanation
Indices: 65789362--65789413 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
65789352 TACTTCAAGT
65789362 AAGTTCAATTCTTGATTATTTCTTA
1 AAGTTCAATTCTTGATTATTTCTTA
65789387 AAGTTCAATTCTTGATTATTTCTTA
1 AAGTTCAATTCTTGATTATTTCTTA
65789412 AA
1 AA
65789414 ATTTTTATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (25 bp):
AAGTTCAATTCTTGATTATTTCTTA
Found at i:65790861 original size:50 final size:51
Alignment explanation
Indices: 65790784--65790912 Score: 224
Period size: 50 Copynumber: 2.5 Consensus size: 51
65790774 GACCATTGCA
*
65790784 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
65790835 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
65790885 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
65790913 CTAATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
50 49 0.66
51 25 0.34
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:65790926 original size:31 final size:31
Alignment explanation
Indices: 65790888--65790972 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
65790878 ACAAATGACA
65790888 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
* * *
65790919 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
*
65790950 AGTGAATAGTGGTAGCTTCGGCT
1 AGTGAAAAGTGGTAGCTTCGGCT
65790973 GCAAGTGACA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
Found at i:65791147 original size:49 final size:47
Alignment explanation
Indices: 65791000--65791205 Score: 185
Period size: 47 Copynumber: 4.5 Consensus size: 47
65790990 TCCGTATAAA
* * * * * * *
65791000 ACCATATCTGGGATATGGCATCG-GTGTGATATATGCTACTGTATAAG
1 ACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTC-GTGTAAG
* * * * * *
65791047 ACCATATCTGAGATATGGCATC-AGTGAGATATGTGATTCGCGTAAG
1 ACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTCGTGTAAG
65791093 ACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGTAAG
1 ACCATAGCTGGGCTATGGCATCGA-ATGTGATATGTGATT-CGTGTAAG
*
65791142 ACCATAGCTGGGCTATGGCATCG-A--T-ATATG-AATAT-GTGTAAG
1 ACCATAGCTGGGCTATGGCATCGAATGTGATATGTGAT-TCGTGTAAG
*
65791184 ACCATAGTTGGGCTATGGCATC
1 ACCATAGCTGGGCTATGGCATC
65791206 ATTATGTAAA
Statistics
Matches: 139, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
42 28 0.20
43 2 0.01
44 6 0.04
45 1 0.01
46 24 0.17
47 35 0.25
48 13 0.09
49 30 0.22
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (47 bp):
ACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTCGTGTAAG
Found at i:65791181 original size:42 final size:42
Alignment explanation
Indices: 65791135--65791249 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 42
65791125 ATGTGATTAC
* *
65791135 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATG-AATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGAT-TATGAAAGAT
65791177 GTGTAAGACCATAGTTGGGCTATGGCATC-ATTATGTAAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGATTATG-AAAGAT
**
65791219 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA
65791250 GAAAATGAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
40 4 0.06
41 2 0.03
42 59 0.89
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCGATTATGAAAGAT
Found at i:65793354 original size:26 final size:26
Alignment explanation
Indices: 65793315--65793422 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
65793305 TGGTACAAAT
65793315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
65793341 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTTCA
65793367 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
65793393 TGATAATGGTTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
65793419 TGAT
1 TGAT
65793423 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:65793393 original size:52 final size:52
Alignment explanation
Indices: 65793315--65793422 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
65793305 TGGTACAAAT
*
65793315 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAAGTAAATATTACA
* * *
65793367 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGTTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAAGTAAATATTACA
65793419 TGAT
1 TGAT
65793423 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAAGTAAATATTACA
Found at i:65795086 original size:27 final size:27
Alignment explanation
Indices: 65795046--65795186 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
65795036 AGGAAGCGTC
*
65795046 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
65795073 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
65795099 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
65795127 CTAGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
65795154 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
65795181 CTGGTG
1 CTGGTG
65795187 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:65795125 original size:54 final size:54
Alignment explanation
Indices: 65795043--65795186 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
65795033 TGGAGGAAGC
*
65795043 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
65795097 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
65795151 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
65795187 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:65795197 original size:27 final size:26
Alignment explanation
Indices: 65795046--65795204 Score: 142
Period size: 27 Copynumber: 5.9 Consensus size: 26
65795036 AGGAAGCGTC
* *
65795046 CTGGTGGCTATGCCACAATTATCTGATT
1 CTGGTGACTCTGCCACAA-TATCTG-TT
* *
65795074 -TGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
65795100 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
65795127 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
65795154 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
65795181 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
65795205 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
26 11 0.10
27 101 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:65795198 original size:81 final size:80
Alignment explanation
Indices: 65795049--65795204 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 80
65795039 AAGCGTCCTG
*
65795049 GTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
65795114 ACAATTATCTGATCTA
66 ACAA-TATCTGATCTA
* *
65795130 GTGGCTCTGCCAC-ATATATCTG-TTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT-T
1 GTGGCTATGCCACAAT-TATCTGATT-TGGTGGCTCTGCCACATATATCTGT-CCTGGTGACTAT
*
65795191 CGTCACAATATCTG
63 -GCCACAATATCTG
65795205 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
80 19 0.28
81 48 0.72
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
ACAATATCTGATCTA
Found at i:65800470 original size:24 final size:24
Alignment explanation
Indices: 65800423--65800470 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
65800413 GGATTCTAGC
* ***
65800423 TAATTGCTCTTGCATCTGTGTTTG
1 TAATTGCTCTTGCATATCCCTTTG
65800447 TAATTGCTCTTGCATATCCCTTTG
1 TAATTGCTCTTGCATATCCCTTTG
65800471 CATTTGTTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.48
Consensus pattern (24 bp):
TAATTGCTCTTGCATATCCCTTTG
Found at i:65800630 original size:19 final size:20
Alignment explanation
Indices: 65800606--65800659 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
65800596 GTCTTTTTTG
* *
65800606 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGAA
65800625 TGAAATGTAATGCAAATGAA
1 TGAAATGTAATGCAAATGAA
65800645 TGAAATG-AATGCAAA
1 TGAAATGTAATGCAAA
65800660 AAGATGCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 24 0.75
20 8 0.25
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.28
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:65804402 original size:19 final size:19
Alignment explanation
Indices: 65804380--65804418 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
65804370 TAATATATAT
65804380 AAAAAACAATTCAAAATAA
1 AAAAAACAATTCAAAATAA
* *
65804399 AAAAAACAGTTTAAAATAA
1 AAAAAACAATTCAAAATAA
65804418 A
1 A
65804419 CAATATGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (19 bp):
AAAAAACAATTCAAAATAA
Found at i:65804514 original size:24 final size:26
Alignment explanation
Indices: 65804487--65804536 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
65804477 CTAAGTAACC
*
65804487 TATA-AAAA-TGTAAAATGGATAATA
1 TATACAAAAGTGTAAAATAGATAATA
*
65804511 TATACAAAAGTTTAAAATAGATAATA
1 TATACAAAAGTGTAAAATAGATAATA
65804537 GATATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 4 0.18
26 14 0.64
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (26 bp):
TATACAAAAGTGTAAAATAGATAATA
Found at i:65804675 original size:20 final size:21
Alignment explanation
Indices: 65804650--65804691 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
65804640 AAGAGATAAT
65804650 ATATATAATAA-CTTAAAATA
1 ATATATAATAAGCTTAAAATA
*
65804670 ATATATAATAAGTTTAAAATA
1 ATATATAATAAGCTTAAAATA
65804691 A
1 A
65804692 ACAATGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
ATATATAATAAGCTTAAAATA
Found at i:65805626 original size:8 final size:8
Alignment explanation
Indices: 65805613--65805654 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
65805603 TTGATTTTAT
65805613 AAATAAAA
1 AAATAAAA
65805621 AAATAAAA
1 AAATAAAA
*
65805629 AGAT-AAA
1 AAATAAAA
65805636 AAATAAAA
1 AAATAAAA
65805644 TGAAATAAAA
1 --AAATAAAA
65805654 A
1 A
65805655 GGGACGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
7 6 0.21
8 15 0.52
10 8 0.28
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (8 bp):
AAATAAAA
Found at i:65807380 original size:16 final size:16
Alignment explanation
Indices: 65807355--65807385 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65807345 ACGACTAATT
*
65807355 AATTTTTAAAATTTAA
1 AATTTATAAAATTTAA
65807371 AATTTATAAAATTTA
1 AATTTATAAAATTTA
65807386 TTAAAAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTTATAAAATTTAA
Found at i:65809264 original size:23 final size:22
Alignment explanation
Indices: 65809226--65809288 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
65809216 TCGAAAATTT
*
65809226 AAAATATTTATAAAATATTTTTTCC
1 AAAAT-TTTAT-AAATATTTATT-C
*
65809251 AAAATTTTATAAATATATATTC
1 AAAATTTTATAAATATTTATTC
65809273 AAAATTTTA-AAATATT
1 AAAATTTTATAAATATT
65809289 AAAAATTACT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.17
22 10 0.29
23 9 0.26
24 5 0.14
25 5 0.14
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (22 bp):
AAAATTTTATAAATATTTATTC
Found at i:65810021 original size:19 final size:20
Alignment explanation
Indices: 65809973--65810027 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
65809963 CAAGATATTC
* *
65809973 TTATAAACTTTGGTATTTGA
1 TTATAAATTTTGGTATTAGA
* *
65809993 TTAGAAATTTTTGTATTAG-
1 TTATAAATTTTGGTATTAGA
65810012 TTATAAATTTTGGTAT
1 TTATAAATTTTGGTAT
65810028 ATCAAAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.53
Consensus pattern (20 bp):
TTATAAATTTTGGTATTAGA
Found at i:65814638 original size:28 final size:28
Alignment explanation
Indices: 65814606--65814686 Score: 135
Period size: 28 Copynumber: 2.9 Consensus size: 28
65814596 GCCTATGTCT
* *
65814606 CTCACACGGCCATGACATGCCTGTGCCC
1 CTCACACAGCCATGACACGCCTGTGCCC
*
65814634 CTCACACAGCCATGACACGCCCGTGCCC
1 CTCACACAGCCATGACACGCCTGTGCCC
65814662 CTCACACAGCCATGACACGCCTGTG
1 CTCACACAGCCATGACACGCCTGTG
65814687 TCCTAATCTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.21, C:0.44, G:0.20, T:0.15
Consensus pattern (28 bp):
CTCACACAGCCATGACACGCCTGTGCCC
Found at i:65815818 original size:49 final size:50
Alignment explanation
Indices: 65815744--65816100 Score: 248
Period size: 49 Copynumber: 7.5 Consensus size: 50
65815734 TAAAGTCCCG
* * * *
65815744 TGTCCCAGATAGGTCTTACATTGACTTTCATATATCGAG-GCCGATTCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* *
65815793 TGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * * * * *
65815842 TGTCCCAGACAGGTCATATACTGGCTCTCATCTATCG-GTGTCGATGCCG
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * * * * * *
65815891 TGTCCCAAATAGGCCTTACACTGGCTCTCATCTATC-AGTGTCAATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * * * *
65815940 TGCCCCAGACAGGTCTTACACTGACACACA-ATA---A--GCTGACGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
* * * **
65815984 TGTCCCAGACAGGTCTTGCACT-AGCT-T-GTATATCCCAAAGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGA-CTCTCATATAT-CGAGTGCCGATGCCA
* * * *
65816032 TGTCCCAGACATGTCTTACACT-AGCTCT--TGTCTC-AATGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGAGTGCCGATGCCA
*
65816078 TGTCCCAGACATGTCTTACACTG
1 TGTCCCAGACAGGTCTTACACTG
65816101 GCACTCATGA
Statistics
Matches: 253, Mismatches: 43, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
43 4 0.02
44 27 0.11
46 34 0.13
47 2 0.01
48 32 0.13
49 154 0.61
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGTGCCGATGCCA
Found at i:65816090 original size:46 final size:48
Alignment explanation
Indices: 65815982--65816099 Score: 168
Period size: 46 Copynumber: 2.5 Consensus size: 48
65815972 AAGCTGACGC
* * *
65815982 CATGTCCCAGACAGGTCTTGCACTAGCTTGTATATCCCAAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCCCAAAGCCGATG
* * *
65816030 CATGTCCCAGACATGTCTTACACTAGC-TCT-TGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCCCAAAGCCGATG
65816076 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
65816100 GGCACTCATG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 37 0.58
47 2 0.03
48 25 0.39
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTATATCCCAAAGCCGATG
Found at i:65823662 original size:49 final size:49
Alignment explanation
Indices: 65823592--65823717 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 49
65823582 ATTAAAGTCG
* * *
65823592 ATGCCGTGTTCCAGA-ATGGTCTTACACTGACTTTCATATATCGAG-GTCA
1 ATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCG-GTGTCA
* * * *
65823641 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATTGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCA
*
65823690 ATGTCATGTCCCAGACAGGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
65823718 AACACACAAC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 1 0.01
49 65 0.97
50 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCA
Found at i:65823711 original size:98 final size:97
Alignment explanation
Indices: 65823542--65823717 Score: 221
Period size: 98 Copynumber: 1.8 Consensus size: 97
65823532 GATAAAATGC
* *
65823542 CAATGCCATGTCCCAAACATAGTCTTACACTGGCTAGCACATTAAAGTCGATGCCGTGTTCCAGA
1 CAATGCCATGTCCCAAACATAGTCTTACACTGGCTAGCACATTAAAGTCGATGCCATGTCCCAGA
65823607 ATGGTCTTACACTGACTTTCATATATCGAGGT
66 ATGGTCTTACACTGACTTTCATATATCGAGGT
* * ** *** *
65823639 CAATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATTGGTGTCGATGTCATGTCCCA
1 CAATGCCATGTCCCAAACATAGTCTTACACTGGCTAGCA-C-ATTAAAGTCGATGCCATGTCCCA
65823703 GACA-GGTCTTACACT
64 GA-ATGGTCTTACACT
65823718 AACACACAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
96 16 0.24
97 19 0.29
98 30 0.45
99 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (97 bp):
CAATGCCATGTCCCAAACATAGTCTTACACTGGCTAGCACATTAAAGTCGATGCCATGTCCCAGA
ATGGTCTTACACTGACTTTCATATATCGAGGT
Found at i:65825506 original size:41 final size:41
Alignment explanation
Indices: 65825319--65825508 Score: 199
Period size: 41 Copynumber: 4.7 Consensus size: 41
65825309 AATTATTTAC
* * * * *
65825319 TGAATTGCATATACGTGCCCCTATTTGTACTTTGGTACCCT
1 TGAATTGCACATACATGCCCCTGTTTATACTTTGATACCCT
*
65825360 TGAATTGCACATACATGCCCCTATTTAT-CTTTGATATCCC-
1 TGAATTGCACATACATGCCCCTGTTTATACTTTGATA-CCCT
* * *
65825400 TAAATT--ACATACATGTGCCCCTGTTTATACTTCGATACCCC
1 TGAATTGCACATACA--TGCCCCTGTTTATACTTTGATACCCT
** *
65825441 TGAATTGCACATATGTGCCCCTGTTTGTACTTTGATACCCT
1 TGAATTGCACATACATGCCCCTGTTTATACTTTGATACCCT
* *
65825482 TGAATTGCACCTACATGCCTCTGTTTA
1 TGAATTGCACATACATGCCCCTGTTTA
65825509 CACTCTAGTA
Statistics
Matches: 124, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 7 0.06
40 27 0.22
41 85 0.69
43 5 0.04
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (41 bp):
TGAATTGCACATACATGCCCCTGTTTATACTTTGATACCCT
Found at i:65831142 original size:61 final size:61
Alignment explanation
Indices: 65831047--65831169 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
65831037 AAAACTAAGA
*
65831047 TTGATTTGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
1 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
65831108 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
1 TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
65831169 T
1 T
65831170 AGAGAATCAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.36
Consensus pattern (61 bp):
TTGATTCGATGAGTTTTCTTACTCCAAGAATTCGATATGGTGATTTAGGATAGGAAAGGGG
Found at i:65832818 original size:14 final size:15
Alignment explanation
Indices: 65832790--65832819 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65832780 TTATTATTAT
65832790 TATTATTTCCTTTCC
1 TATTATTTCCTTTCC
65832805 TATTATTT-CTTTCC
1 TATTATTTCCTTTCC
65832819 T
1 T
65832820 TTTTCCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTTCCTTTCC
Found at i:65852572 original size:29 final size:30
Alignment explanation
Indices: 65852538--65852609 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
65852528 ATCAACCGCG
*
65852538 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
65852567 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
65852596 CACACTTAGTGCCA
1 CACACTTAGTGCCA
65852610 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:65863436 original size:27 final size:27
Alignment explanation
Indices: 65863406--65863583 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
65863396 ATATTGAGCC
* * *
65863406 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
65863433 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
65863460 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
65863488 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
65863515 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
65863542 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
65863569 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65863584 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:65863499 original size:55 final size:55
Alignment explanation
Indices: 65863406--65863583 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
65863396 ATATTGAGCC
* * *
65863406 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
65863460 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
65863515 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
65863569 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65863584 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:65863545 original size:82 final size:81
Alignment explanation
Indices: 65863427--65863582 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
65863417 TGCTATACAA
* * *
65863427 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
65863492 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
65863509 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
65863573 CACTTAGTGC
65 CACTTAGTGC
65863583 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65871304 original size:27 final size:27
Alignment explanation
Indices: 65871274--65871451 Score: 106
Period size: 27 Copynumber: 6.6 Consensus size: 27
65871264 ATATTGAGCC
* * *
65871274 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
65871301 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
65871328 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
65871356 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * **
65871383 CGCACGCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
65871410 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
65871437 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65871452 GTACAATTTA
Statistics
Matches: 121, Mismatches: 27, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
27 98 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:65871367 original size:55 final size:55
Alignment explanation
Indices: 65871274--65871451 Score: 195
Period size: 54 Copynumber: 3.3 Consensus size: 55
65871264 ATATTGAGCC
* * *
65871274 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
65871328 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
65871383 CGCACGCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
65871437 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65871452 GTACAATTTA
Statistics
Matches: 102, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 55 0.54
55 44 0.43
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:65874740 original size:14 final size:14
Alignment explanation
Indices: 65874717--65874751 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
65874707 AGGAGAGAAT
*
65874717 GATGAATGATGAGG
1 GATGAGTGATGAGG
65874731 GATGAGTGATGAGG
1 GATGAGTGATGAGG
65874745 GATGAGT
1 GATGAGT
65874752 AGAAATGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (14 bp):
GATGAGTGATGAGG
Found at i:65877526 original size:50 final size:50
Alignment explanation
Indices: 65877472--65877854 Score: 337
Period size: 50 Copynumber: 7.6 Consensus size: 50
65877462 CTGGTATGCA
* * * *
65877472 TAGTAGCCTGCACTCAGTACTACACATGTGACCTATCAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
** * * *
65877522 TAGTAGCCTACAC-TAGTACTACACACGTGATTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * ** * * *
65877571 TAGTAGCCTGCACTTAGTACAACACACGTGATCGAAGTTAA-CGGGTACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
* *
65877622 TAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTTGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * * *
65877672 TAGTATCCTACAATTCA-TACTACACACGTGACTTAACCATCTGATACA-G
1 TAGTAGCCTACACTT-AGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * * *
65877721 ATAGTAGCCTACACTTTGTACTACACACGTGA-TTGAAGTTAA-CGGGTACGCA
1 -TAGTAGCCTACACTTAGTACTACACACGTGACCT--A-TCAATCTGGTACACG
* * *
65877773 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * *
65877823 TAGTAGCCTGCACTTTGTACTACACATGTGAC
1 TAGTAGCCTACACTTAGTACTACACACGTGAC
65877855 TCACAATGAA
Statistics
Matches: 263, Mismatches: 57, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
49 49 0.19
50 140 0.53
51 71 0.27
52 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
Found at i:65877759 original size:151 final size:150
Alignment explanation
Indices: 65877470--65877855 Score: 560
Period size: 151 Copynumber: 2.6 Consensus size: 150
65877460 CTCTGGTATG
* * *
65877470 CATAGTAGCCTGCACTCAGTACTACACATGTGACCTATCAATCTGGTACATGTAGTAGCCTAC-A
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTACAA
* * *
65877534 CTAGTACTACACACGTGATTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACAACACACG
66 TTA-TACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACAACACACG
65877599 TGATCGAAGTTAACGGGTACA
130 TGATCGAAGTTAACGGGTACA
* *
65877620 CATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTTGTACACGTAGTATCCTACAA
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTACAA
* *
65877685 TTCATACTACACACGTGACTTAACCATCTGATACA-GATAGTAGCCTACACTTTGTACTACACAC
66 TT-ATACTACACACGTGACTTAACCATCTGATACACG-TAGTAGCCTACACTTAGTACAACACAC
* *
65877749 GTGATTGAAGTTAACGGGTACG
129 GTGATCGAAGTTAACGGGTACA
* * *
65877771 CATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTACA-
* * *
65877836 TTTGTACTACACATGTGACT
65 ATTATACTACACACGTGACT
65877856 CACAATGAAT
Statistics
Matches: 212, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
150 59 0.28
151 150 0.71
152 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (150 bp):
CATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTACAA
TTATACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACAACACACGT
GATCGAAGTTAACGGGTACA
Found at i:65877794 original size:101 final size:99
Alignment explanation
Indices: 65877470--65877853 Score: 344
Period size: 101 Copynumber: 3.8 Consensus size: 99
65877460 CTCTGGTATG
* * * * **
65877470 CATAGTAGCCTGCACTCAGTACTACACATGTGACCTATCAATCTGGTACATGTAGTAGCCTACAC
1 CATAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGTAGCCTACAC
* * *
65877535 -TAGTACTACACACGTGATTTAACCATCTGATACA
66 TTAGTACTACACACGTGA-TTAATCAACTGGTACA
* * * * * * *
65877569 CGTAGTAGCCTGCACTTAGTACAACACACGTGATCGAAGTTAA-CGGGTACACATAGTAGCCTAC
1 CATAGTAGCCTACACTTAGTACTACACACGTGACCTAA--CAATCTGGTACACATAGTAGCCTAC
* * *
65877633 ACTTAGTACTACACATGTGACCT-ATCAATCTTGTACA
64 ACTTAGTACTACACACGTGA-TTAATCAA-CTGGTACA
* * * * * * *
65877670 CGTAGTATCCTACAATTCA-TACTACACACGTGACTTAACCATCTGATACAGATAGTAGCCTACA
1 CATAGTAGCCTACACTT-AGTACTACACACGTGACCTAACAATCTGGTACACATAGTAGCCTACA
* * * *
65877734 CTTTGTACTACACACGTGATTGAAGTTAACGGGTACG
65 CTTAGTACTACACACGTGATT-AA-TCAACTGGTACA
* * * *
65877771 CATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGTAGCCTACAC
* *
65877836 TTTGTACTACACATGTGA
66 TTAGTACTACACACGTGA
65877854 CTCACAATGA
Statistics
Matches: 226, Mismatches: 49, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
99 33 0.15
100 60 0.27
101 129 0.57
102 4 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (99 bp):
CATAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGTAGCCTACAC
TTAGTACTACACACGTGATTAATCAACTGGTACA
Found at i:65879357 original size:91 final size:90
Alignment explanation
Indices: 65879141--65879359 Score: 244
Period size: 93 Copynumber: 2.4 Consensus size: 90
65879131 GGGTGATTTG
* * *
65879141 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAGACA
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGACGAGAGCCAGTGTAAGACA
* * * *
65879206 TGTTTGGGACATGCTTCAGCCATATTA
64 TGTCTGGGACACGCATCAGCCAGATTA
* * *
65879233 TGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GATAGCCAGTGTAAGA
1 T--GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC--CAGACGAGAGCCAGTGTAAGA
* *
65879297 CGTGTCTGGGACACGCATCGGCCAAGATT-
62 CATGTCTGGGACACGCATCAGCC-AGATTA
*
65879326 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC
65879360 AGCACACATA
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
91 31 0.29
92 11 0.10
93 45 0.42
94 21 0.19
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (90 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGACGAGAGCCAGTGTAAGACATG
TCTGGGACACGCATCAGCCAGATTA
Found at i:65903358 original size:41 final size:38
Alignment explanation
Indices: 65903313--65903521 Score: 165
Period size: 39 Copynumber: 5.3 Consensus size: 38
65903303 GAATCACGTA
* * **
65903313 CCTTCGGAATTTAACCGGATATAGCTACTACTGTTCAAATG
1 CCTTCGGGACTTAACCGGATATAG-TACT-C-GCACAAATG
* * *
65903354 CCTTCGGGACATAGCCGGTTATAGTACTCGCACAAATG
1 CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATG
* *
65903392 CCTTCGGGACTTAACCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAACCGGATATAGT-ACTCGCACAAATG
* *
65903431 CCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCACACAAATG
1 CCTTCGGGACTTA-ACCGGATA-TAGT-ACTCGCACAAATG
* * * *
65903470 CCTTC-GGATTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGACTTA-ACCGGATATAGT-AC-TCGCACAAATG
65903509 CCTTCGGGACTTA
1 CCTTCGGGACTTA
65903522 GCCCGGACAT
Statistics
Matches: 138, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
38 34 0.25
39 67 0.49
40 18 0.13
41 19 0.14
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (38 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATG
Found at i:65903397 original size:38 final size:39
Alignment explanation
Indices: 65903348--65903524 Score: 177
Period size: 39 Copynumber: 4.6 Consensus size: 39
65903338 TACTACTGTT
*
65903348 CAAATGCCTTCGGGACATAGCCGGTTATAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGTTATAGTAACTCGCA
*
65903386 CAAATGCCTTCGGGACTTAACCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGG-TTATAGTAACTCGCA
* * *
65903425 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAG-CCGGTTA-TAGTAACTCGCA
* * * * *
65903464 CAAATGCCTTC-GGATTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAG-CCGGTTATAGTAAC-TCGCA
65903504 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
65903525 CGGACATCAT
Statistics
Matches: 115, Mismatches: 15, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
38 32 0.28
39 68 0.59
40 15 0.13
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGTTATAGTAACTCGCA
Found at i:65903488 original size:78 final size:79
Alignment explanation
Indices: 65903350--65903528 Score: 199
Period size: 78 Copynumber: 2.3 Consensus size: 79
65903340 CTACTGTTCA
* * * *
65903350 AATGCCTTCGGGACATAG-CCGG-TTATAGTACTCGCACAAATGCCTTCGGGACTTAACCGGATT
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTACTCACACAAATGCCTTCGGGACTTAACCGGATA
*
65903413 TAGTAAC-TCGCACC
66 TAGTAACTTAGCA-C
* *
65903427 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTC-GGATTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGT-ACTCACACAAATGCCTTCGGGACTTA-ACCGGA
* *
65903489 TATGGTCACTTAGCAC
64 TATAGTAACTTAGCAC
*
65903505 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
65903529 CATCATTCGA
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
76 4 0.05
77 26 0.30
78 41 0.48
79 15 0.17
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTACTCACACAAATGCCTTCGGGACTTAACCGGATA
TAGTAACTTAGCAC
Found at i:65904794 original size:23 final size:23
Alignment explanation
Indices: 65904761--65904804 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
65904751 AGGATGGACA
*
65904761 CATTTTTTTTCT-TTTGTTTTCAT
1 CATTTTCTTTCTCTTT-TTTTCAT
65904784 CATTTTCTTTCTCTTTTTTTC
1 CATTTTCTTTCTCTTTTTTTC
65904805 CATTTCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (23 bp):
CATTTTCTTTCTCTTTTTTTCAT
Found at i:65910586 original size:79 final size:81
Alignment explanation
Indices: 65910477--65910659 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
65910467 TACTCGTTCA
* * *
65910477 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* *
65910540 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
65910557 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
* *
65910620 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
65910636 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
65910660 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:65910659 original size:40 final size:40
Alignment explanation
Indices: 65910475--65910659 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
65910465 GCTACTCGTT
* * *
65910475 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
65910515 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
65910555 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-AGCA
* * *
65910594 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
65910635 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65910660 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 81 0.65
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:65911946 original size:23 final size:23
Alignment explanation
Indices: 65911895--65911951 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
65911885 AAAGGATGGA
65911895 CACATTTT-TTTTCTTTTGTTTT
1 CACATTTTCTTTTCTTTTGTTTT
*
65911917 CATCATTTTCTTTCTCTTTTTTTTT
1 CA-CATTTTCTTT-TCTTTTGTTTT
65911942 C-CA-TTTCTTT
1 CACATTTTCTTT
65911952 ATTACTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
22 9 0.29
23 8 0.26
24 3 0.10
25 11 0.35
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (23 bp):
CACATTTTCTTTTCTTTTGTTTT
Found at i:65917423 original size:28 final size:28
Alignment explanation
Indices: 65917385--65917491 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
65917375 GAATCATTCG
* *
65917385 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
65917413 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
65917441 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
65917469 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
65917492 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:65925864 original size:44 final size:45
Alignment explanation
Indices: 65925744--65925951 Score: 307
Period size: 45 Copynumber: 4.7 Consensus size: 45
65925734 TATCGTACAG
*
65925744 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
65925789 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* *
65925834 TACTATTCAGG-CTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* * *
65925878 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* *
65925923 TGA-TA-TCGGG-CTTCGACCCTAGCAGGCTA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTA
65925952 AATGCTGGTG
Statistics
Matches: 151, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
43 17 0.11
44 47 0.31
45 86 0.57
46 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
Found at i:65925907 original size:89 final size:89
Alignment explanation
Indices: 65925744--65925951 Score: 312
Period size: 89 Copynumber: 2.3 Consensus size: 89
65925734 TATCGTACAG
*
65925744 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTGAGC
1 TACTATTCGGG-CTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTCGAGC
*
65925809 CTAGCAGGCTATGATGCCGGTGAAA
65 CTAGCAGGCTATAATGCCGGTGAAA
* * *
65925834 TACTATTCAGGCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCCTTCGAGCC
1 TACTATTCGGGCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTCGAGCC
*
65925899 TAGTAGGCTATAATGCCGGTGAAA
66 TAGCAGGCTATAATGCCGGTGAAA
* *
65925923 TGA-TA-TCGGGCTTCGACCCTAGCAGGCTA
1 T-ACTATTCGGGCTTTGAGCCTAGCAGGCTA
65925952 AATGCTGGTG
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
88 21 0.19
89 76 0.70
90 11 0.10
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (89 bp):
TACTATTCGGGCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTCGAGCC
TAGCAGGCTATAATGCCGGTGAAA
Found at i:65933593 original size:45 final size:45
Alignment explanation
Indices: 65933529--65933736 Score: 289
Period size: 45 Copynumber: 4.7 Consensus size: 45
65933519 TATCGTACAG
65933529 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* * *
65933574 TACTATTCGGGTCTTTGAGCCTAGCAGGCTATGATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* * *
65933619 TACTATTCAGGCCTCTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* * *
65933664 TACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
*
65933709 TGA-TA-TCGGG-CTTCGA-CCTAGCAGGCTA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTA
65933737 AATGCCAGTG
Statistics
Matches: 148, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 12 0.08
43 6 0.04
44 4 0.03
45 125 0.84
46 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
Found at i:65934251 original size:16 final size:18
Alignment explanation
Indices: 65934220--65934252 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
65934210 AACTCGTCAC
65934220 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
65934238 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
65934253 ATTTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:65938677 original size:100 final size:100
Alignment explanation
Indices: 65938573--65938766 Score: 345
Period size: 100 Copynumber: 1.9 Consensus size: 100
65938563 TAAAAATTAT
*
65938573 CAACTAAATTTTATT-AAAAATTAAAAAATAAACTACCAAAAACTCAAGATAATAATTAAAAATA
1 CAACTAAATATTATTAAAAAATT-AAAAATAAACTACCAAAAACTCAAGATAATAATTAAAAATA
65938637 AAGAAATTACACAATTAACATAATCTATAATTGACA
65 AAGAAATTACACAATTAACATAATCTATAATTGACA
*
65938673 CAACTAAATATTATTAAAAAATTAAAAATAAATTACCAAAAACTCAAGATAATAATTAAAAATAA
1 CAACTAAATATTATTAAAAAATTAAAAATAAACTACCAAAAACTCAAGATAATAATTAAAAATAA
*
65938738 ATAAATTACACAATTAACATAATCTATAA
66 AGAAATTACACAATTAACATAATCTATAA
65938767 ATATAAAATT
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
100 83 0.92
101 7 0.08
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (100 bp):
CAACTAAATATTATTAAAAAATTAAAAATAAACTACCAAAAACTCAAGATAATAATTAAAAATAA
AGAAATTACACAATTAACATAATCTATAATTGACA
Found at i:65942317 original size:6 final size:6
Alignment explanation
Indices: 65942306--65942363 Score: 107
Period size: 6 Copynumber: 9.7 Consensus size: 6
65942296 TAAGTTCAAA
65942306 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
65942354 AGAAAT AAAA
1 AAAAAT AAAA
65942364 CAAAGTCCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:65942522 original size:19 final size:19
Alignment explanation
Indices: 65942468--65942516 Score: 84
Period size: 17 Copynumber: 2.7 Consensus size: 19
65942458 CATCTTTAAG
65942468 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
65942487 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
65942504 GATATGCAATCTT
1 GATATGCAATCTT
65942517 GAATATATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 17 0.61
19 11 0.39
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:65949576 original size:44 final size:45
Alignment explanation
Indices: 65949434--65949748 Score: 249
Period size: 44 Copynumber: 7.1 Consensus size: 45
65949424 AAAAGAAACA
*
65949434 AGATTTGGCATCCCTGTGTTTATAGGGAA-ACAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
* * * * * **
65949479 AGATCTGACA-CTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTC
1 AGATTTGGCATCT-CTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
*
65949524 AGCA--TGGCATCTCTGTGTTTATAGGGAACAAG-TTGAAGATAGC
1 AG-ATTTGGCATCTCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* *
65949567 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATTGAAGATAGC
1 AGATTTGGCATCTCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * ***
65949611 AGATCTGACAT-TCCTGTGCTTACAGCGAA-ACAGATCAAAGATTTT
1 AGATTTGGCATCT-CTGTGTTTATAGGGAACA-AGATCGAAGATAGC
* *
65949656 A-ATATGGCATCTCTGTGTTTATAGGGAACAAG-TTGAAGATAGC
1 AGATTTGGCATCTCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * *
65949699 AGATTTGACATCCCTGTGTTTACAGGGAACAA-ATCGAAGACATAGC
1 AGATTTGGCATCTCTGTGTTTATAGGGAACAAGATCGAAG--ATAGC
65949745 AGAT
1 AGAT
65949749 CTGATTTTCG
Statistics
Matches: 210, Mismatches: 42, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.00
43 20 0.10
44 130 0.62
45 49 0.23
46 10 0.05
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
AGATTTGGCATCTCTGTGTTTATAGGGAACAAGATCGAAGATAGC
Found at i:65949672 original size:132 final size:132
Alignment explanation
Indices: 65949434--65949752 Score: 512
Period size: 132 Copynumber: 2.4 Consensus size: 132
65949424 AAAAGAAACA
65949434 AGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
* * * *
65949499 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGAT
65 TACAGCGAAACAGATCAAAGATTTCAACATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGAT
65949564 AGC
130 AGC
* *
65949567 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
65949632 ACAGCGAAACAGATCAAAGATTTTAATATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAACAGATCAAAGATTTCAACATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
65949697 GC
131 GC
* * *
65949699 AGATTTGACATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCTGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGA
65949753 TTTTCGAATG
Statistics
Matches: 172, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
132 132 0.77
133 27 0.16
134 13 0.08
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAACAGATCAAAGATTTCAACATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:65949914 original size:175 final size:175
Alignment explanation
Indices: 65949713--65950282 Score: 917
Period size: 175 Copynumber: 3.3 Consensus size: 175
65949703 TTGACATCCC
* * *
65949713 TGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCTGATTTTCGAATGTTCTCACACCAAAGC
1 TGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGAATGTTCTCACACCAAAGC
*
65949778 AGATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGTAGGTCTAACC
66 AGATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGGTCTAACC
* *
65949843 TTTAGATGTTTATAATGAAGCAGATCCAAGATGATTTGGCATTCT
131 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCT
* *
65949888 TGTGTTTAGAAGGAACAAATCGAAGACATAACAGATTTGACTTTCGAATGTTCTCACACCAAAGC
1 TGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGAATGTTCTCACACCAAAGC
* * *
65949953 AGATCCAAGATAACAGATCTGGCATCTCCATTTCAACGGAGAGTAGGTACATAGCAGGTCTAACC
66 AGATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGGTCTAACC
*
65950018 TTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCT
131 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCT
* *
65950063 TGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGC
1 TGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGAATGTTCTCACACCAAAGC
* * *
65950128 AAATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACC
66 AGATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGGTCTAACC
* * *
65950193 TTCAGATGATTT-TACTGAAGGAAATCCAAGATGATTTGGCATCCT
131 TTCAGATG-TTTATACTGAAGCAGATCCAAGATGATTTGGCATTCT
* * *
65950238 TGTGTTCACAAGGAGCAAATCGAAGACATAGCAGATTTGGCTTTC
1 TGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTC
65950283 ACGTGTTTAC
Statistics
Matches: 366, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
175 363 0.99
176 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (175 bp):
TGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGAATGTTCTCACACCAAAGC
AGATCCAAGATAATAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGGTCTAACC
TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCT
Found at i:65950113 original size:87 final size:87
Alignment explanation
Indices: 65949842--65950321 Score: 278
Period size: 87 Copynumber: 5.5 Consensus size: 87
65949832 TAGGTCTAAC
* * *
65949842 CTTT-AGATGTTTATAATGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAGAAGGAACAA
1 CTTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAA
*
65949906 ATCGAAGACATAACAGATTTGA
66 ATCGAAGACATAGCAGATTTGA
** * ***
65949928 CTTTC-GAATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CAA
1 CTTTCAG-ATGTT-T-ACACTGAAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTACAA
* * * * * *
65949989 CGG-A-GAGT--AGGTACATAGCAGGTCTAA
59 -GGAACAAATCGAAG-ACATAGCAGATTTGA
* * *
65950016 CCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAA
1 CTTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAA
65950081 ATCGAAGACATAGCAGATTTGA
66 ATCGAAGACATAGCAGATTTGA
* ** * * *** *
65950103 CTTTCGGATGTTCTTACACCAAAGCAAATCCAAGATAATAGATCTGGCA-TC-TCCATTT-CGAC
1 CTTTCAGATG-T-TTACACTGAAGCAGATCCAAG---AT-GATTTGGCATTCTTGTGTTTAC-AA
* * *
65950165 GGAGAGC--A--G-ATACATAGCAGATCTAA
59 GGA-A-CAAATCGAAGACATAGCAGATTTGA
* * * * * * *
65950191 CCTTCAGATGATTT-TACTGAAGGAAATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCA
1 CTTTCAGATG-TTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACA
*
65950255 AATCGAAGACATAGCAGATTTGG
65 AATCGAAGACATAGCAGATTTGA
* *
65950278 CTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGATTTGGCAT
1 CTTTCA-GATGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT
65950322 CTCTGTATTG
Statistics
Matches: 286, Mismatches: 71, Indels: 73
0.67 0.17 0.17
Matches are distributed among these distances:
82 17 0.06
83 5 0.02
84 14 0.05
85 5 0.02
86 42 0.15
87 75 0.26
88 48 0.17
89 37 0.13
90 4 0.01
91 15 0.05
92 7 0.02
93 17 0.06
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (87 bp):
CTTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAA
ATCGAAGACATAGCAGATTTGA
Found at i:65950587 original size:6 final size:6
Alignment explanation
Indices: 65950576--65950603 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
65950566 AATAAGTTAA
65950576 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
65950604 CAAAGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:65950773 original size:19 final size:19
Alignment explanation
Indices: 65950726--65950785 Score: 79
Period size: 17 Copynumber: 3.2 Consensus size: 19
65950716 AATCTTTAAG
*
65950726 GATATGCAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
65950745 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
65950762 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
65950783 GAT
1 GAT
65950786 CTTGTAATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
17 16 0.44
19 11 0.31
21 9 0.25
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:65952840 original size:33 final size:33
Alignment explanation
Indices: 65952798--65952860 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
65952788 TCACTATGTG
65952798 TAAAAAACTAAAGTTTCTTTATCCATACTTGTA
1 TAAAAAACTAAAGTTTCTTTATCCATACTTGTA
65952831 TAAAAAACTAAAGTTTCTTTATCCATACTT
1 TAAAAAACTAAAGTTTCTTTATCCATACTT
65952861 TTTTGAGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.40
Consensus pattern (33 bp):
TAAAAAACTAAAGTTTCTTTATCCATACTTGTA
Found at i:65955617 original size:20 final size:20
Alignment explanation
Indices: 65955592--65955633 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
65955582 CATGACATAG
65955592 GATTTCAATATGTGGTGTAC
1 GATTTCAATATGTGGTGTAC
65955612 GATTTCAATATGTGGTGTAC
1 GATTTCAATATGTGGTGTAC
65955632 GA
1 GA
65955634 GTAAGACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (20 bp):
GATTTCAATATGTGGTGTAC
Found at i:65974328 original size:48 final size:48
Alignment explanation
Indices: 65974257--65974496 Score: 417
Period size: 48 Copynumber: 4.9 Consensus size: 48
65974247 CTTGTAGTGA
*
65974257 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
65974305 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
*
65974353 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
65974401 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
*
65974449 ATATGTGGTAAAAAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 ATATGTGGT----AAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
65974497 GTGTGTATAT
Statistics
Matches: 184, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
48 150 0.82
52 34 0.18
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
Found at i:65974691 original size:37 final size:37
Alignment explanation
Indices: 65974637--65974776 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
65974627 GGAAATATAT
65974637 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
65974674 TTCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
65974711 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
65974748 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
65974777 GGACTATTCG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:65986757 original size:9 final size:9
Alignment explanation
Indices: 65986743--65986772 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
65986733 GTTTTTTTTT
65986743 GCATTCATC
1 GCATTCATC
65986752 GCATTCATC
1 GCATTCATC
65986761 GCATTCAT-
1 GCATTCATC
65986769 GCAT
1 GCAT
65986773 CAGCATTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.33
Consensus pattern (9 bp):
GCATTCATC
Found at i:65995046 original size:44 final size:44
Alignment explanation
Indices: 65994998--65995133 Score: 127
Period size: 44 Copynumber: 3.1 Consensus size: 44
65994988 TGCAGTGAAG
65994998 CAGATTGAAGATTTACAGATCTTACCCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATTTACAGATCTTACCCCCTAAGCAGTAGGGAAA
* * * * *
65995042 CAGATCGAAG-GTAACA-AGCTTCAACCCCCTAAGCAGTAGGGTAA
1 CAGATTGAAGATTTACAGATCTT--ACCCCCTAAGCAGTAGGGAAA
* * * *
65995086 CA-AGTCAA-ATTTGCAGATCTTATCACCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATTTACAGATCTTA-CCCCCTAAGCAGTAGGGAAA
*
65995129 TAGAT
1 CAGAT
65995134 CAAAGAAGAT
Statistics
Matches: 70, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
42 5 0.07
43 29 0.41
44 36 0.51
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (44 bp):
CAGATTGAAGATTTACAGATCTTACCCCCTAAGCAGTAGGGAAA
Found at i:65995121 original size:87 final size:85
Alignment explanation
Indices: 65995008--65995172 Score: 217
Period size: 87 Copynumber: 1.9 Consensus size: 85
65994998 CAGATTGAAG
* *
65995008 ATTTACAGATCTTACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTAACA-AG-CTTCAACCCCC
1 ATTTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATC-AAAG-AACAGAGCCTT-AACCCCC
65995071 TAAGCAGTAGGGTAACAAGTCAA
63 TAAGCAGTAGGGTAACAAGTCAA
* * * *
65995094 ATTTGCAGATCTTATCACCCTAAGCAGTAGGGAAATAGATCAAAGAAGATGGGCCTTAACCCCCT
1 ATTTACAGATCTTA-CACCCTAAGCAGTAGGGAAACAGATCAAAGAACA-GAGCCTTAACCCCCT
65995159 AAGCAGTAGGGTAA
64 AAGCAGTAGGGTAA
65995173 TAGGCTAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 3 0.04
86 16 0.23
87 47 0.68
88 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (85 bp):
ATTTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATCAAAGAACAGAGCCTTAACCCCCTAA
GCAGTAGGGTAACAAGTCAA
Found at i:66002926 original size:49 final size:49
Alignment explanation
Indices: 66002873--66003104 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
66002863 CTGGTATGCA
* *
66002873 TAGTAGCCTGCACTTAGTACTACACATACCACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * ** ***
66002922 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * * * *
66002972 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
* * *
66003023 TAGTAGCCTGCACTTAATACTACACATGCAACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
*
66003072 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
66003105 TCACAATAGA
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 69 0.46
50 47 0.31
51 35 0.23
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:66008156 original size:49 final size:49
Alignment explanation
Indices: 66008097--66008192 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
66008087 GTAGCCAAAG
* * *
66008097 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCGA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACAACACATGCGACCGA
* *
66008146 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACAACACATGTGACC
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACAACACATGCGACC
66008193 TCACAATAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (49 bp):
TTATCCGGTACACATAGTAGCCTGCACTTAGTACAACACATGCGACCGA
Found at i:66012998 original size:17 final size:17
Alignment explanation
Indices: 66012976--66013012 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
66012966 GTATAAAATG
66012976 AAAGGTTGTTGATAGAT
1 AAAGGTTGTTGATAGAT
*
66012993 AAAGGTTGTTGATAGCT
1 AAAGGTTGTTGATAGAT
66013010 AAA
1 AAA
66013013 CAAATTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.27, T:0.32
Consensus pattern (17 bp):
AAAGGTTGTTGATAGAT
Found at i:66020149 original size:48 final size:48
Alignment explanation
Indices: 66020078--66020607 Score: 889
Period size: 48 Copynumber: 11.0 Consensus size: 48
66020068 TAAGATAAAT
* *
66020078 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
66020126 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
66020174 ATATATATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
66020222 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
66020270 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
**
66020318 ATATGTATATGTGGTAAATTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
66020366 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
66020414 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
66020462 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
66020510 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
66020558 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
66020606 AT
1 AT
66020608 GTGTGTATAT
Statistics
Matches: 453, Mismatches: 29, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 453 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:66020801 original size:37 final size:37
Alignment explanation
Indices: 66020748--66020850 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
66020738 GGAAATATAT
66020748 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
66020785 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66020822 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
66020851 GGACTATTTG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:66026315 original size:102 final size:102
Alignment explanation
Indices: 66026139--66026445 Score: 569
Period size: 102 Copynumber: 3.0 Consensus size: 102
66026129 GATTTTGGGG
*
66026139 CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCACGTCTAACATTCGCCCCACGC
1 CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCGCGTCTAACATTCGCCCCACGC
66026204 CAGTGTTCCTTGGGCATGTGGGTACACACGGTCGTGT
66 CAGTGTTCCTTGGGCATGTGGGTACACACGGTCGTGT
*
66026241 CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCGTGTCTAACATTCGCCCCACGC
1 CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCGCGTCTAACATTCGCCCCACGC
66026306 CAGTGTTCCTTGGGCATGTGGGTACACACGGTCGTGT
66 CAGTGTTCCTTGGGCATGTGGGTACACACGGTCGTGT
66026343 CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCGCGTCTAACATTCGCCCCACGC
1 CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCGCGTCTAACATTCGCCCCACGC
* * *
66026408 AAGTGTTCCTTGGGCGTGTGGGTACACACGGCCGTGT
66 CAGTGTTCCTTGGGCATGTGGGTACACACGGTCGTGT
66026445 C
1 C
66026446 TTGCTTCGTT
Statistics
Matches: 199, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 199 1.00
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.28
Consensus pattern (102 bp):
CACACGGCCGTGCCCGTGTGTTTCACGATTTTTAAATTTAGGCGCGTCTAACATTCGCCCCACGC
CAGTGTTCCTTGGGCATGTGGGTACACACGGTCGTGT
Found at i:66032135 original size:19 final size:19
Alignment explanation
Indices: 66032111--66032153 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
66032101 AATCTTTAAG
66032111 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
66032130 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
66032149 GATAT
1 GATAT
66032154 CCTTTAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:66037798 original size:19 final size:19
Alignment explanation
Indices: 66037770--66037813 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
66037760 CTTCTATTTC
66037770 AAAAAAAAGG-AAAAAAAG
1 AAAAAAAAGGAAAAAAAAG
66037788 AAAAGAAAAGGAAAAAAAAG
1 AAAA-AAAAGGAAAAAAAAG
66037808 AAAAAA
1 AAAAAA
66037814 GAAAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.17
19 8 0.33
20 12 0.50
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAAAAAGGAAAAAAAAG
Found at i:66037803 original size:20 final size:18
Alignment explanation
Indices: 66037770--66037821 Score: 72
Period size: 19 Copynumber: 2.9 Consensus size: 18
66037760 CTTCTATTTC
66037770 AAAAAAAAGGAAAAAAAG
1 AAAAAAAAGGAAAAAAAG
66037788 AAAAGAAAAGGAAAAAAA-
1 AAAA-AAAAGGAAAAAAAG
*
66037806 AGAAAAAA-GAAAAAAA
1 AAAAAAAAGGAAAAAAA
66037822 ATGGAGAGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 8 0.25
17 4 0.12
18 7 0.22
19 13 0.41
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAAAAAGGAAAAAAAG
Found at i:66037822 original size:9 final size:9
Alignment explanation
Indices: 66037770--66037822 Score: 65
Period size: 9 Copynumber: 5.9 Consensus size: 9
66037760 CTTCTATTTC
66037770 AAAAAAAAG
1 AAAAAAAAG
*
66037779 GAAAAAAAG
1 AAAAAAAAG
66037788 AAAAGAAAAGG
1 AAAA-AAAA-G
66037799 AAAAAAAAG
1 AAAAAAAAG
66037808 --AAAAAAG
1 AAAAAAAAG
66037815 AAAAAAAA
1 AAAAAAAA
66037823 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.18
9 18 0.47
10 8 0.21
11 5 0.13
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:66038917 original size:84 final size:84
Alignment explanation
Indices: 66038776--66039304 Score: 793
Period size: 84 Copynumber: 6.3 Consensus size: 84
66038766 CAAAATTCAA
*
66038776 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
66038841 GTGGAGTAGATCAAAGTCT
66 GTGGAGCAGATCGAAGACT
*
66038860 CGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
66038925 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
66038944 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
66039009 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * **
66039028 CGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTCGCAGATCTTATCTGTCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
66039088 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* *
66039110 CACCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
66039175 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
66039194 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
66039257 GCGGAGCAGATCGAAGACGAT
66 GTGGAGCAGATCGAAGAC--T
* *
66039278 GCACCTTAACCCCCTAAGCAGTAGGGT
1 -CGCCTTAATCCCCTAAGCAGTAGGGT
66039305 CCAAAATGAT
Statistics
Matches: 405, Mismatches: 29, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
79 37 0.09
81 1 0.00
82 63 0.16
84 241 0.60
85 25 0.06
87 38 0.09
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:66039219 original size:250 final size:248
Alignment explanation
Indices: 66038776--66039304 Score: 785
Period size: 250 Copynumber: 2.1 Consensus size: 248
66038766 CAAAATTCAA
*
66038776 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTCGCAGATCTTATCTCCCTAAGCAATA
* * * * * *
66038841 GTGGAGTAGATCAAAGTCTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGAT
62 GCGGAGCAGATCAAAGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGAT
* *
66038906 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCGGTAGGGTA
127 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTA
* *
66038971 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC-T-
192 ACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAGCGGAGCAGATCGAAGACATG
* ** *
66039028 CGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-TTCGCAGATCTTATCTGTCTAAGCAGTAGCGG
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTCGCAGATCTTATCTCCCTAAGCAATAGCGG
*
66039092 AGCAGATCGACGACGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATC
66 AGCAGATC-A--AAGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATC
66039157 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAA
128 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAA
66039222 CAGGTTAAATTTGCAGATCTTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGATG
193 CAGGTTAAATTTGCAGATCTTATCCCTAAGCAGTAGCGGAGCAGATCGAAGAC-ATG
* *
66039279 CACCTTAACCCCCTAAGCAGTAGGGT
1 CGCCTTAATCCCCTAAGCAGTAGGGT
66039305 CCAAAATGAT
Statistics
Matches: 253, Mismatches: 18, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
247 34 0.13
248 30 0.12
250 134 0.53
251 24 0.09
252 31 0.12
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (248 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTCGCAGATCTTATCTCCCTAAGCAATAGCGG
AGCAGATCAAAGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAG
GTTAAATTTGCAGATCTTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACATG
Found at i:66039249 original size:41 final size:41
Alignment explanation
Indices: 66039120--66039257 Score: 129
Period size: 41 Copynumber: 3.3 Consensus size: 41
66039110 CACCTTAATC
66039120 CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA--T
* ** *** * *
66039163 CCCTAAGCAGTAGTGG-AGCAGATCGAA-GACCCG-CCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGATTAAATTTGCAGATCTT-AT
*
66039203 CCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTAT
66039245 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
66039258 CGGAGCAGAT
Statistics
Matches: 72, Mismatches: 17, Indels: 14
0.70 0.17 0.14
Matches are distributed among these distances:
40 3 0.04
41 36 0.50
42 7 0.10
43 24 0.33
44 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTAT
Found at i:66040069 original size:19 final size:19
Alignment explanation
Indices: 66040045--66040123 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
66040035 AATATTTAAG
66040045 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
66040064 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
66040083 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
66040100 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
66040121 GAT
1 GAT
66040124 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:66063247 original size:21 final size:21
Alignment explanation
Indices: 66063223--66063265 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
66063213 AAAGGGAAAG
*
66063223 AAGCATCAGATAAGTTTTTAT
1 AAGCACCAGATAAGTTTTTAT
66063244 AAGCACCAGATAAGTTTTTAT
1 AAGCACCAGATAAGTTTTTAT
66063265 A
1 A
66063266 CTCCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (21 bp):
AAGCACCAGATAAGTTTTTAT
Found at i:66064068 original size:27 final size:27
Alignment explanation
Indices: 66064038--66064095 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
66064028 ATTGATAAAG
* * *
66064038 TAAATACGGGGTAGTCTGTCGAGACAA
1 TAAACACGGGGTAGTCTGCCAAGACAA
66064065 TAAACACGGGGTAGTCTGCCAAGACAA
1 TAAACACGGGGTAGTCTGCCAAGACAA
66064092 TAAA
1 TAAA
66064096 AATGAGATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (27 bp):
TAAACACGGGGTAGTCTGCCAAGACAA
Found at i:66064106 original size:27 final size:27
Alignment explanation
Indices: 66064049--66064106 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
66064039 AAATACGGGG
* * * * *
66064049 TAGTCTGTCGAGACAATAAACACGGGG
1 TAGTCTGCCAAGACAATAAAAACGAGA
*
66064076 TAGTCTGCCAAGACAATAAAAATGAGA
1 TAGTCTGCCAAGACAATAAAAACGAGA
66064103 TAGT
1 TAGT
66064107 GCACCAAGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (27 bp):
TAGTCTGCCAAGACAATAAAAACGAGA
Found at i:66067235 original size:6 final size:6
Alignment explanation
Indices: 66067226--66067294 Score: 52
Period size: 6 Copynumber: 11.2 Consensus size: 6
66067216 TACCAGAACT
* * *
66067226 AGAATC AGAATC AGAATT AGGGGA-C AGAATC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC A--GAATC AGAATC AGAATC AGAATC AGAATC
*
66067275 AGGTAA-C AGAATC AAAATC A
1 A-G-AATC AGAATC AGAATC A
66067295 AAATGTGAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
5 4 0.08
6 39 0.78
7 4 0.08
8 3 0.06
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:66067261 original size:31 final size:31
Alignment explanation
Indices: 66067226--66067294 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
66067216 TACCAGAACT
* *
66067226 AGAATCAGAATCAGAATTAGGGGACAGAATC
1 AGAATCAGAATCAGAATCAGGGAACAGAATC
* *
66067257 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGGAACAGAATC
*
66067288 AAAATCA
1 AGAATCA
66067295 AAATGTGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGGAACAGAATC
Found at i:66067459 original size:27 final size:26
Alignment explanation
Indices: 66067417--66067468 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
66067407 GCGAGGCTGC
*
66067417 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
66067443 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
66067469 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66067509 original size:67 final size:67
Alignment explanation
Indices: 66067401--66067554 Score: 308
Period size: 67 Copynumber: 2.3 Consensus size: 67
66067391 CACTACAGAA
66067401 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
66067466 AG
66 AG
66067468 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
66067533 AG
66 AG
66067535 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
66067555 ACGCTTCCTC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 87 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:66067526 original size:27 final size:26
Alignment explanation
Indices: 66067484--66067535 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
66067474 GCGAGGCTGC
*
66067484 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
66067510 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
66067536 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66067811 original size:27 final size:27
Alignment explanation
Indices: 66067781--66068056 Score: 245
Period size: 27 Copynumber: 10.2 Consensus size: 27
66067771 GGGTAAAATG
* * *
66067781 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
66067808 GTAATTCTACCTTAC-AGGAGTATTT-A
1 GTAATTCTACCCTACAAGG-GTATTTCA
*
66067834 GGTATTTCTACCCTACAAGGGTATTTCA
1 -GTAATTCTACCCTACAAGGGTATTTCA
* * *
66067862 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* **
66067889 GTAATTCTATCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
66067916 GTATTTCTACGCTAC-AGGTGTATTTCG
1 GTAATTCTACCCTACAAGG-GTATTTCA
* ** * *
66067943 GTATTTCTATGCTACAGGGGTATTT-T
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
66067969 GATATTTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
66067997 GTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
66068024 GCATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
66068051 GTAATT
1 GTAATT
66068057 TTGTAAATCA
Statistics
Matches: 209, Mismatches: 32, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
26 8 0.04
27 194 0.93
28 7 0.03
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:66067852 original size:54 final size:54
Alignment explanation
Indices: 66067784--66068053 Score: 285
Period size: 54 Copynumber: 5.0 Consensus size: 54
66067774 TAAAATGGTA
* * * *
66067784 ATTT-TACCCCACAAGGGTATCTCAGTAATTCTACCTTACAGGAGTATTTAGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTAGGT
*
66067837 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA-GT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTA-TTTAGGT
* * ** * * * *
66067891 AATTCTATCCTACAAGGGTATTTTGGTATTTCTACGCTACAGGTGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTAGGT
** * * * *
66067945 ATTTCTATGCTACAGGGGTATTT-TGATATTTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTAGGT
* * * * *
66067999 ATTTCTACCCTACAAGGGTATTTTAGCATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTAGGT
66068053 A
1 A
66068054 ATTTTGTAAA
Statistics
Matches: 186, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
53 8 0.04
54 173 0.93
55 5 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTAGGT
Found at i:66067873 original size:81 final size:79
Alignment explanation
Indices: 66067781--66068056 Score: 286
Period size: 81 Copynumber: 3.4 Consensus size: 79
66067771 GGGTAAAATG
* * *
66067781 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCTTACAGGAGTATTTAGGTATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC-TACAGG-GTATTTAGGTATTTCTACC
66067846 CTACAAGGGTATTTCA
64 CTACAAGGGTATTTCA
* * * * *
66067862 GTAATTCTACCCTATAGGGGTATTTTAGTAATTCTATCCTACAAGGGTATTTTGGTATTTCTACG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTA-CCTAC-AGGGTATTTAGGTATTTCTACC
*
66067927 CTAC-AGGTGTATTTCG
64 CTACAAGG-GTATTTCA
* ** * * * *
66067943 GTATTTCTATGCTACAGGGGTATTT-TGATATTTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTA-CCTACA-GGGTATTTAGGTATTTCTAC
*
66068007 CCTACAAGGGTATTTTA
63 CCTACAAGGGTATTTCA
* * *
66068024 GCATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATT
66068057 TTGTAAATCA
Statistics
Matches: 162, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
80 5 0.03
81 148 0.91
82 9 0.06
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (79 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCTACAGGGTATTTAGGTATTTCTACCCT
ACAAGGGTATTTCA
Found at i:66068124 original size:27 final size:26
Alignment explanation
Indices: 66068040--66068783 Score: 83
Period size: 27 Copynumber: 27.8 Consensus size: 26
66068030 CTACCCTACA
** * *
66068040 AGGGTATTTCGGTAATTTTGTAAATCA
1 AGGGTATTT-GGTAATTTTACAAGTCG
** * * * *
66068067 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGT-ATTTGGTAATTTTACAAGTCG
66068094 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTA-TTTGGTAATTTTACAAGTCG
** *
66068121 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTT-GGTAATTTTACAAGTCG
* * *
66068148 A-GG-A----GTAATTTCACAAATTAG
1 AGGGTATTTGGTAATTTTAC-AAGTCG
* *
66068169 -GGGTATTTTGGTAATTTTACAA-ACT
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * *
66068194 AGGGGTATTTTGATAATTTTACAA-ACA
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
* ** *
66068221 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
* * * * *
66068249 ATGGTATTTTTGTAATTTTATAA-ACAA
1 AGGGTA-TTTGGTAATTTTACAAGTC-G
* * * *
66068276 AGGGCATTTTAGTAATTTTACAA-ACT
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* ** *
66068302 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
* ** *
66068330 ATGGTATTTTGGTAATTTTACAAACCA
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * * *
66068357 AGGGTATTTTGGTGATTTTATAA-ACTA
1 AGGGTA-TTTGGTAATTTTACAAGTC-G
* * * *
66068384 AGGGTATTCTAGTAATTTTATAAATAG
1 AGGGTATT-TGGTAATTTTACAAGTCG
* *
66068411 -GGGTATTTTGGTAATTTTGTA-AACT-A
1 AGGGTA-TTTGGTAA-TTT-TACAAGTCG
* *
66068437 AGGGTATTTTGGTAATTTTACAA-ACT
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * ** *
66068463 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
* ** *
66068491 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * ** ** *
66068518 ATGATATTTTGGTAATTTTGTAAACCA
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* *
66068545 AGGGTATTTTGGTAATTTTACAA-ACC
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * ** *
66068571 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
* * * *
66068599 AGGGTATTCTAGTAAATTTACAA-ACC
1 AGGGTATT-TGGTAATTTTACAAGTCG
** * *
66068625 AGGGGTATGTTGGTAATTTTGTAAATCA
1 A-GGGTAT-TTGGTAATTTTACAAGTCG
* *
66068653 AGGGTATTTTGGTAATTTTACAA-ACC
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * *
66068679 AGGGGTATTTTGGTGATTTTGTA-AACT-A
1 A-GGGTA-TTTGGT-AATTT-TACAAGTCG
* *
66068707 AGGGTATTTTGGTAATTTTACAA-ACC
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * ** *
66068733 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
66068761 AGGGTATTCTGGTAATTTTACAA
1 AGGGTATT-TGGTAATTTTACAA
66068784 ACTAGGGGTA
Statistics
Matches: 567, Mismatches: 106, Indels: 88
0.75 0.14 0.12
Matches are distributed among these distances:
20 8 0.01
21 5 0.01
22 1 0.00
25 5 0.01
26 46 0.08
27 474 0.84
28 26 0.05
29 2 0.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGTATTTGGTAATTTTACAAGTCG
Found at i:66069213 original size:27 final size:27
Alignment explanation
Indices: 66068169--66069206 Score: 1224
Period size: 27 Copynumber: 38.6 Consensus size: 27
66068159 CACAAATTAG
* * *
66068169 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068196 GGGTATTTTGATAATTTTACAAA-CAA
1 GGGTATTTTGGTAATTTTATAAACCAA
66068222 GGGGTATTTTGGTAATTTTATAAACCAA
1 -GGGTATTTTGGTAATTTTATAAACCAA
* * *
66068250 TGGTATTTTTGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * * *
66068277 GGGCATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
66068304 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068331 TGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068358 GGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
66068385 GGGTATTCTAGTAATTTTATAAA-TAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068411 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
66068438 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66068465 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068492 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
66068519 TGATATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068546 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66068573 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * * *
66068600 GGGTATTCTAGTAAATTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
66068627 GGGTATGTTGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068654 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
66068681 GGGTATTTTGGTGATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068708 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66068735 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
66068762 GGGTATTCTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068789 GGGTATTTTGGTGATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66068816 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66068843 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
66068870 GGGTATTCTAGTAAATTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66068897 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068924 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
66068951 GGGTATTTTGGTGATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66068978 TGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66069005 GGGTATTTTGGTGATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
66069032 GGGTATTCTAGTAA-TTT-T--ACTAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66069055 GGGTATTTTGGTGATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66069082 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
66069109 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * * * *
66069136 GTGTATTCTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
66069163 GGGTATTTTGGTAATTTTGTAAACGAA
1 GGGTATTTTGGTAATTTTATAAACCAA
66069190 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
66069207 GGTAAACTAA
Statistics
Matches: 843, Mismatches: 161, Indels: 14
0.83 0.16 0.01
Matches are distributed among these distances:
23 14 0.02
24 3 0.00
25 2 0.00
26 26 0.03
27 795 0.94
28 3 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:66069215 original size:54 final size:54
Alignment explanation
Indices: 66068169--66069206 Score: 1431
Period size: 54 Copynumber: 19.3 Consensus size: 54
66068159 CACAAATTAG
* * * *
66068169 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAA-CAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* ** * * *
66068222 GGGGTATTTTGGTAATTTTATAAACCAATGGTATTTTTGTAATTTTATAAACAAA
1 -GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * * *
66068277 GGGCATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * *
66068331 TGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * * * * * *
66068385 GGGTATTCTAGTAATTTTATAAA-TAGGGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
*
66068438 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* ** * * *
66068492 GGGTATTTTAGTAATTTTACAAACCAATGATATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
66068546 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * * * * * *
66068600 GGGTATTCTAGTAAATTTACAAACCAGGGGTATGTTGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* *
66068654 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
66068708 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * *
66068762 GGGTATTCTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
*
66068816 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * * * * *
66068870 GGGTATTCTAGTAAATTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* *
66068924 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * *
66068978 TGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * * *
66069032 GGGTATTCTAGTAATTTTAC-TA--A-GGGTATTTTGGTGATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
66069082 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
* * * * * * *
66069136 GTGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACGAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
66069190 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
66069207 GGTAAACTAA
Statistics
Matches: 869, Mismatches: 109, Indels: 12
0.88 0.11 0.01
Matches are distributed among these distances:
50 43 0.05
51 2 0.00
53 48 0.06
54 774 0.89
55 2 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
Found at i:66072276 original size:37 final size:37
Alignment explanation
Indices: 66072218--66072399 Score: 303
Period size: 37 Copynumber: 4.9 Consensus size: 37
66072208 GCTCAGATGA
* * *
66072218 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACA-
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
66072254 AGATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 A-ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
66072292 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
66072329 AATCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
66072366 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
66072400 ATATATTTCC
Statistics
Matches: 138, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
36 1 0.01
37 136 0.99
38 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:66072601 original size:48 final size:48
Alignment explanation
Indices: 66072546--66072955 Score: 712
Period size: 48 Copynumber: 8.4 Consensus size: 48
66072536 ACACATCGCC
*
66072546 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66072594 TACATATTTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TAC--A--TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66072646 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66072694 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
66072742 TACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66072790 TACATATTTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TAC--A--TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66072842 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
66072890 TACATATTTCACATTAGCCATTTGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66072938 TACATATTTCACATTAGC
1 TACATATTTCACATTAGC
66072956 TCATACATAT
Statistics
Matches: 349, Mismatches: 5, Indels: 16
0.94 0.01 0.04
Matches are distributed among these distances:
48 253 0.72
50 4 0.01
52 92 0.26
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Done.