Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 192 of 311
Found at i:66072712 original size:148 final size:144
Alignment explanation
Indices: 66072546--66072955 Score: 712
Period size: 148 Copynumber: 2.8 Consensus size: 144
66072536 ACACATCGCC
*
66072546 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC--A--TATTTCACA
66072611 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
62 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
66072676 CCACATATACATATCTCA
127 CCACATATACATATCTCA
66072694 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
66072759 CCATTCGGTTTTACCACATATACATATCTCATACATATTTATTTCACATTAGCCATTCGGCTTTA
66 CCATTCGGCTTTACCACATATACATATCTCATAC--A--TATTTCACATTAGCCATTCGGCTTTA
66072824 CCACATATACATATCTCA
127 CCACATATACATATCTCA
66072842 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
66072907 CCATTTGACTTTACCACATATACATATCTCATACATATTTCACATTAGC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
66072956 TCATACATAT
Statistics
Matches: 253, Mismatches: 5, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
144 60 0.24
146 3 0.01
148 190 0.75
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (144 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCTCA
Found at i:66072880 original size:196 final size:196
Alignment explanation
Indices: 66072546--66072955 Score: 784
Period size: 196 Copynumber: 2.1 Consensus size: 196
66072536 ACACATCGCC
*
66072546 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTATTTCACA
66072611 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
66 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
66072676 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
131 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC
66072741 A
196 A
*
66072742 TACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTATTTCACA
66072807 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
66 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
66072872 CCACATATACATATCTCATACATATTTCACATTAGCCATTTGACTTTACCACATATACATATCTC
131 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC
66072937 A
196 A
66072938 TACATATTTCACATTAGC
1 TACATATTTCACATTAGC
66072956 TCATACATAT
Statistics
Matches: 210, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
196 210 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (196 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTATTTCACA
TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC
A
Found at i:66072958 original size:21 final size:21
Alignment explanation
Indices: 66072934--66072976 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
66072924 ATATACATAT
66072934 CTCATACATATTTCACATTAG
1 CTCATACATATTTCACATTAG
66072955 CTCATACATATTTCACATTAG
1 CTCATACATATTTCACATTAG
66072976 C
1 C
66072977 CATTCGGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (21 bp):
CTCATACATATTTCACATTAG
Found at i:66086126 original size:79 final size:81
Alignment explanation
Indices: 66085990--66086172 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
66085980 TCGAATGATG
* *
66085990 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
66086054 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
66086069 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
66086131 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
66086149 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
66086173 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:66086188 original size:40 final size:40
Alignment explanation
Indices: 66085991--66086174 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
66085981 CGAATGATGT
* * * *
66085991 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
66086031 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
66086071 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66086109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66086150 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
66086175 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:66086196 original size:79 final size:79
Alignment explanation
Indices: 66086043--66086207 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
66086033 GGACTAAGAT
* **
66086043 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
66086108 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
66086122 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
66086185 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
66086201 CCGAAGG
1 CCGAAGG
66086208 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:66093580 original size:49 final size:50
Alignment explanation
Indices: 66093515--66093739 Score: 292
Period size: 49 Copynumber: 4.5 Consensus size: 50
66093505 TGAGGTCATG
* *
66093515 TGTGTAGCACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * * *
66093564 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * ** *
66093615 TGTGTAGTACTAAGGGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* *
66093665 TGTGTGGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
66093714 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
66093740 TGCATACCAG
Statistics
Matches: 150, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
49 66 0.44
50 46 0.31
51 38 0.25
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Found at i:66093690 original size:101 final size:98
Alignment explanation
Indices: 66093514--66093739 Score: 308
Period size: 101 Copynumber: 2.3 Consensus size: 98
66093504 GTGAGGTCAT
*
66093514 GTGTGTAGCACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
*
66093579 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTACGCGTACCCGATAA-TT-GATCAC
* * * ** * *
66093614 GTGTGTAGTACTAAGGGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTGGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
* * *
66093679 TGCAGGCTACTACGTGTACCGGATAATTGGTCAC
65 TGCAGGCTACTACGCGTACCCGATAATTGATCAC
*
66093713 ATGTGTAGTACTAAGTGCAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
66093740 TGCATACCAG
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 30 0.27
100 39 0.35
101 42 0.38
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGTACCCGATAATTGATCAC
Found at i:66095544 original size:39 final size:40
Alignment explanation
Indices: 66095488--66095576 Score: 117
Period size: 39 Copynumber: 2.2 Consensus size: 40
66095478 TATTTTAGTT
** *
66095488 CGCACACTAAATGCTTTATATGGCCGAAACTATTTTGAAA
1 CGCACACTAAATGCTTTATATAACCGAAACTATTTCGAAA
* *
66095528 CGCA-ACTAAGTGCTTTATATAACTGAAACTATTTCGAAA
1 CGCACACTAAATGCTTTATATAACCGAAACTATTTCGAAA
*
66095567 TGCACACTAA
1 CGCACACTAA
66095577 TTGTCAAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 33 0.79
40 9 0.21
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.29
Consensus pattern (40 bp):
CGCACACTAAATGCTTTATATAACCGAAACTATTTCGAAA
Found at i:66100676 original size:6 final size:6
Alignment explanation
Indices: 66100665--66100689 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
66100655 GTTGAAACCA
66100665 TTCCTT TTCCTT TTCCTT TTCCTT T
1 TTCCTT TTCCTT TTCCTT TTCCTT T
66100690 ACATCAATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCCTT
Found at i:66109290 original size:46 final size:46
Alignment explanation
Indices: 66109223--66109394 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
66109213 TGTAACCCAC
*
66109223 CCATAAGCGAACTCGAACTCAACTCAATGAGCTTC-GGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAATGAG-TTCAGGCGTTCGCAT
* * **
66109269 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTCGTT-AAAT
1 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCAG--G---CGTTCGCAT
* * *
66109319 -C-TCA-CGAACTCGGACTCAACTCAACT-AGTTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAA-TGAGTTCAGGCGTTCGCAT
*
66109362 CCATAAGTGAACTCGGACTCAACTCAATGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAATGAGTT
66109395 TTGATGCCCA
Statistics
Matches: 100, Mismatches: 14, Indels: 24
0.72 0.10 0.17
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 1 0.01
45 7 0.07
46 52 0.52
47 25 0.25
48 3 0.03
49 1 0.01
50 2 0.02
51 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAATGAGTTCAGGCGTTCGCAT
Found at i:66111824 original size:31 final size:32
Alignment explanation
Indices: 66111753--66111824 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
66111743 CCCATAGAGG
* * *
66111753 AAAGTCCTTAGATTTGGTAAAAAGGGCAAGTT
1 AAAGTCCTCAGATTTGATAAAAAGGGAAAGTT
66111785 AAAGTCCTCAGATTTGATAAAAAGGGAAAGTT
1 AAAGTCCTCAGATTTGATAAAAAGGGAAAGTT
66111817 -AAGTCCTC
1 AAAGTCCTC
66111825 GTGTCATAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
31 8 0.22
32 29 0.78
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.26
Consensus pattern (32 bp):
AAAGTCCTCAGATTTGATAAAAAGGGAAAGTT
Found at i:66113294 original size:21 final size:22
Alignment explanation
Indices: 66113254--66113294 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
66113244 TTCCAAATAA
* *
66113254 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
66113276 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
66113295 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:66115667 original size:94 final size:93
Alignment explanation
Indices: 66115544--66115858 Score: 323
Period size: 94 Copynumber: 3.4 Consensus size: 93
66115534 ATGTGAGAGT
* * * * *
66115544 CAGTATAAGACCATGTTTGGGACATGGCATCGGCATTAAGACAAGGGCTAGTGTAAGACGTGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTAAGATAAGTGCTAGTGTAAGACATGTCT
66115609 GGGACATGCATCAGCCGCATCATGATAGC
65 GGGACATGCATCAGCCGCATCATGATAGC
* * * * * * *
66115638 CCGTGTAAGACCACGTTTGGGACATGGCATCGG-TGTAGAGGTGAGTGCCAGTGTAAGACATGTT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TA-AGATAAGTGCTAGTGTAAGACATGTC
* * * * *
66115702 TGGGACATGCACCGGCCTCAATGATGTTAGC
64 TGGGACATGCATCAGCCGC-ATCATGATAGC
* * **
66115733 CAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TAAGTTTCGTGCTAGTGTAAGACATGTCTG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAAGATAAGTGCTAGTGTAAGACATGTCTG
* * *
66115795 GGACATGCATCAGCACGTAAACATGAGAGC
66 GGACATGCATCAGC-CG-CATCATGATAGC
*
66115825 TAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC
66115859 CTCGATGGAG
Statistics
Matches: 179, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
91 35 0.20
92 20 0.11
93 22 0.12
94 84 0.47
95 18 0.10
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAAGATAAGTGCTAGTGTAAGACATGTCTG
GGACATGCATCAGCCGCATCATGATAGC
Found at i:66115703 original size:47 final size:46
Alignment explanation
Indices: 66115544--66115899 Score: 190
Period size: 47 Copynumber: 7.6 Consensus size: 46
66115534 ATGTGAGAGT
* * * *** *
66115544 CAGTATAAGACCATGTTTGGGACATGGCATCGGCATTAAGACAAGGGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTAAGGTGAGTGC
* * * * ***
66115592 TAGTGTAAGA-CGTGTCTGGGACATGCATCAGCCGCATCATGA-TAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCC-TAAGGTGAGT-GC
* * * **
66115638 CCGTGTAAGACCACGTTTGGGACATGGCATCGGTGTAGAGGTGAGTGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTA-AGGTGAGTGC
* *
66115686 CAGTGTAAGA-CATGTTTGGGACATGCACCGGCCTCAA--TGATGTTAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-AAGGTGA-G-T-GC
* * **
66115733 CAGTGTAAGA-CGTGTCTGGGACATGCATCGG-CTAAGTTTCGTGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCTAAGGTGAGTGC
* * ** *
66115777 TAGTGTAAGA-CATGTCTGGGACATGCATCAGCACGTAAACATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGC-C-T-AAGGTGAGTGC
* * *
66115825 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATGGAGATAGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTAAGGT-GAG-T-GC
*
66115874 CAGCGTAAGACCATGTCTGGGACATG
1 CAGTGTAAGACCATGTCTGGGACATG
66115900 GCAGCGGCAA
Statistics
Matches: 239, Mismatches: 48, Indels: 42
0.73 0.15 0.13
Matches are distributed among these distances:
44 33 0.14
45 4 0.02
46 35 0.15
47 73 0.31
48 46 0.19
49 41 0.17
50 7 0.03
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCCTAAGGTGAGTGC
Found at i:66115793 original size:44 final size:48
Alignment explanation
Indices: 66115682--66115899 Score: 168
Period size: 49 Copynumber: 4.6 Consensus size: 48
66115672 GTAGAGGTGA
* *
66115682 GTGCCAGTGTAAGACATGTTTGGGACATGCACCGGCCTCAATGATGTT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTT
* *
66115730 -AGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CT-AA-G-T-TT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTT
* * ** *
66115772 CGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGT-AAACATG-A
1 -GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCAATGATGTT
* * * *
66115821 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA-GAT
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAT-GATGTT
* *
66115871 -AGCCAGCGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG
66115900 GCAGCGGCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 31 0.22
45 2 0.01
46 3 0.02
47 33 0.24
48 15 0.11
49 44 0.32
50 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (48 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTT
Found at i:66117566 original size:42 final size:42
Alignment explanation
Indices: 66117456--66117605 Score: 192
Period size: 42 Copynumber: 3.5 Consensus size: 42
66117446 AATTCTATAT
* * *
66117456 CCCAAATATGGTCTTACATGTAATCTCATATCGATGCCAATAG
1 CCCAAATATGGTCTTACACGTAGTCTCATATCGATGCC-ATAC
** * * *
66117499 CCCAGCTATGGTCTTACATGAAGTCTCATATCAATGCCATAC
1 CCCAAATATGGTCTTACACGTAGTCTCATATCGATGCCATAC
* *
66117541 CCCAAATATGGTCTTACACGTAGTCTCATATTGATGCCATAT
1 CCCAAATATGGTCTTACACGTAGTCTCATATCGATGCCATAC
*
66117583 CCCAAATATGGTTTTACACGTAG
1 CCCAAATATGGTCTTACACGTAG
66117606 CCCAGCTATG
Statistics
Matches: 93, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 60 0.65
43 33 0.35
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
CCCAAATATGGTCTTACACGTAGTCTCATATCGATGCCATAC
Found at i:66117654 original size:65 final size:65
Alignment explanation
Indices: 66117547--66117670 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 65
66117537 ATACCCCAAA
* * * *
66117547 TATGGTCTTACACGTAGTCTCATATTGATGCCATATCCCAAATATGGTTTTACACGTAGCCCAGC
1 TATGGTCTTACACGAAGTCTCATATCGATGCCATATCCCAAATATGGTCTTACAAGTAGCCCAGC
66117612 TATGGTCTTACACGAAGTCTCATATCGATGCCATA-CCTCAAATATGGTCTTACAAGTAG
1 TATGGTCTTACACGAAGTCTCATATCGATGCCATATCC-CAAATATGGTCTTACAAGTAG
66117671 TCTCATGAGT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 2 0.04
65 52 0.96
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (65 bp):
TATGGTCTTACACGAAGTCTCATATCGATGCCATATCCCAAATATGGTCTTACAAGTAGCCCAGC
Found at i:66117869 original size:43 final size:42
Alignment explanation
Indices: 66117816--66117979 Score: 213
Period size: 42 Copynumber: 3.9 Consensus size: 42
66117806 AATCATACCA
* * *
66117816 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATTG
* * *
66117858 ATGCCAATATCCAAGCTAAGGTCTTACACG-AAGTCTCATATTG
1 ATGCC-ATATCCTAGATATGGTCTTACACGTAA-TCTCATATTG
*
66117901 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATTG
* * *
66117943 ATTCCATATCCTAGATATGGTCTTAAACGTAGTCTCA
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
66117980 ATAACCCTAA
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 73 0.68
43 35 0.32
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATTG
Found at i:66117942 original size:85 final size:84
Alignment explanation
Indices: 66117816--66117979 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 84
66117806 AATCATACCA
* * *
66117816 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTGATGCCAATATCCAAGCTAAGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTGATGCC-ATATCCAAGATAAGGTC
*
66117881 TTACACGAAGTCTCATATTG
65 TTAAACGAAGTCTCATATTG
* * * * *
66117901 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATATTGATTCCATATCCTAGATATGGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTGATGCCATATCCAAGATAAGGTCT
*
66117966 TAAACGTAGTCTCA
66 TAAACGAAGTCTCA
66117980 ATAACCCTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 27 0.39
85 42 0.61
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTGATGCCATATCCAAGATAAGGTCT
TAAACGAAGTCTCATATTG
Found at i:66121713 original size:42 final size:42
Alignment explanation
Indices: 66121654--66121744 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
66121644 TGACCTTAGG
* * *
66121654 GTTATGAGTTTATGTGTAAGACTATATCTAGGATATGACATC
1 GTTATGAGTTTACGTGTAAGACCATATCTAGGACATGACATC
* * *
66121696 GTTATGAGATTT-CGTGTAAGACCATGTCTTGGACATGGCATC
1 GTTATGAG-TTTACGTGTAAGACCATATCTAGGACATGACATC
*
66121738 GATATGA
1 GTTATGA
66121745 AAATCATGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 38 0.93
43 3 0.07
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (42 bp):
GTTATGAGTTTACGTGTAAGACCATATCTAGGACATGACATC
Found at i:66121819 original size:42 final size:40
Alignment explanation
Indices: 66121668--66121820 Score: 126
Period size: 42 Copynumber: 3.7 Consensus size: 40
66121658 TGAGTTTATG
* * * * *
66121668 TGTAAGACTATATCTAGGATATGACATCGTTATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA--TCA
* * * *
66121710 TGTAAGACCATGTCTTGGACATGGCATCGATATGAAAATCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATG-AGATCA
** * *
66121751 TGTAAGACCATGGCTGGGCTATTGGCATGGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAT--CA
*
66121794 TGTAAGACAATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
66121821 TGGTATGATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 22 0.25
42 46 0.52
43 21 0.24
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (40 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCA
Found at i:66121902 original size:32 final size:32
Alignment explanation
Indices: 66121866--66121930 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
66121856 CCTTTAGTAT
66121866 TCCAAGTGGTTCAATGGGTAATTTAAAGATTA
1 TCCAAGTGGTTCAATGGGTAATTTAAAGATTA
66121898 TCCAAGTGGTTCAATGGGTAATTTAAAGATTA
1 TCCAAGTGGTTCAATGGGTAATTTAAAGATTA
66121930 T
1 T
66121931 GTCAAAGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (32 bp):
TCCAAGTGGTTCAATGGGTAATTTAAAGATTA
Found at i:66128399 original size:42 final size:42
Alignment explanation
Indices: 66128242--66128402 Score: 196
Period size: 42 Copynumber: 3.8 Consensus size: 42
66128232 GGTACCGTAC
* *
66128242 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATAT
* * * * **
66128284 CGATGACAATAGCCCAGCTATGGTCTTACACAAAGTCTCATAT
1 CAATG-CCATATCCCAGATATGGTCTTACACGTAGTCTCATAT
* * * *
66128327 CGATGTCATACCCCAAATATGGTCTTACACGTAGTCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATAT
*
66128369 TAATGCCATATCCCAGATATGGTCTTACACGTAG
1 CAATGCCATATCCCAGATATGGTCTTACACGTAG
66128403 CCCAGCTATG
Statistics
Matches: 98, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 63 0.64
43 35 0.36
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATAT
Found at i:66128454 original size:65 final size:65
Alignment explanation
Indices: 66128344--66128467 Score: 185
Period size: 65 Copynumber: 1.9 Consensus size: 65
66128334 ATACCCCAAA
* * * * *
66128344 TATGGTCTTACACGTAGTCTCATATTAATGCCATATCCCAGATATGGTCTTACACGTAGCCCAGC
1 TATGGTCTTAAACGAAGTCTCATATCAATGCCATACCCCAAATATGGTCTTACACGTAGCCCAGC
* *
66128409 TATGGTCTTAAACGAAGTCTCATATCGATGCCATACCCCAAATATGGTCTTACATGTAG
1 TATGGTCTTAAACGAAGTCTCATATCAATGCCATACCCCAAATATGGTCTTACACGTAG
66128468 TCTCATATTG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 52 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (65 bp):
TATGGTCTTAAACGAAGTCTCATATCAATGCCATACCCCAAATATGGTCTTACACGTAGCCCAGC
Found at i:66128470 original size:42 final size:42
Alignment explanation
Indices: 66128409--66128514 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
66128399 GTAGCCCAGC
* *
66128409 TATGGTCTTAAACGAAGTCTCATATCGATGCCATACCCCAAA
1 TATGGTCTTACACGTAGTCTCATATCGATGCCATACCCCAAA
* * * * * *
66128451 TATGGTCTTACATGTAGTCTCATATTGATGTCGTATCCCAGA
1 TATGGTCTTACACGTAGTCTCATATCGATGCCATACCCCAAA
66128493 TATGGTCTTACACGTAGTCTCA
1 TATGGTCTTACACGTAGTCTCA
66128515 GTAGCCCTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACACGTAGTCTCATATCGATGCCATACCCCAAA
Found at i:66128488 original size:107 final size:107
Alignment explanation
Indices: 66128293--66128509 Score: 371
Period size: 107 Copynumber: 2.0 Consensus size: 107
66128283 TCGATGACAA
* *
66128293 TAGCCCAGCTATGGTCTTACACAAAGTCTCATATCGATGTCATACCCCAAATATGGTCTTACACG
1 TAGCCCAGCTATGGTCTTAAACAAAGTCTCATATCGATGCCATACCCCAAATATGGTCTTACACG
66128358 TAGTCTCATATTAATGCCATATCCCAGATATGGTCTTACACG
66 TAGTCTCATATTAATGCCATATCCCAGATATGGTCTTACACG
* *
66128400 TAGCCCAGCTATGGTCTTAAACGAAGTCTCATATCGATGCCATACCCCAAATATGGTCTTACATG
1 TAGCCCAGCTATGGTCTTAAACAAAGTCTCATATCGATGCCATACCCCAAATATGGTCTTACACG
* * *
66128465 TAGTCTCATATTGATGTCGTATCCCAGATATGGTCTTACACG
66 TAGTCTCATATTAATGCCATATCCCAGATATGGTCTTACACG
66128507 TAG
1 TAG
66128510 TCTCAGTAGC
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (107 bp):
TAGCCCAGCTATGGTCTTAAACAAAGTCTCATATCGATGCCATACCCCAAATATGGTCTTACACG
TAGTCTCATATTAATGCCATATCCCAGATATGGTCTTACACG
Found at i:66132407 original size:21 final size:20
Alignment explanation
Indices: 66132377--66132416 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66132367 AAAATTATGA
*
66132377 CTTAAGCTCAAAATTTCCAAC
1 CTTAAACTC-AAATTTCCAAC
*
66132398 CTTAAACTCAATTTTCCAA
1 CTTAAACTCAAATTTCCAA
66132417 AAACATACAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.33
Consensus pattern (20 bp):
CTTAAACTCAAATTTCCAAC
Found at i:66140273 original size:46 final size:46
Alignment explanation
Indices: 66140213--66140421 Score: 276
Period size: 46 Copynumber: 4.5 Consensus size: 46
66140203 TTTGACGTGA
* * * * *
66140213 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** * * *
66140259 TGCCATGGTATCTTTCAACCATGGTCTTGTTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
66140305 TGCCATGGTATCCTTCGACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
66140351 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
66140397 TGCCATGGTATCTTTCAACCATGGT
1 TGCCATGGTATCTTTCAACCATGGT
66140422 ACTTTTAATT
Statistics
Matches: 142, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 4 0.03
46 138 0.97
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:66142618 original size:27 final size:27
Alignment explanation
Indices: 66142586--66142665 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
66142576 TTTCTTTATA
66142586 TATTAATAAAATAATAATAAAATATCT
1 TATTAATAAAATAATAATAAAATATCT
* *
66142613 TATTAA-AGTATTAATAA-AATAATAT-T
1 TATTAATA-AAATAATAATAA-AATATCT
* *
66142639 TATCTAATTAAATAATTATAAAATATC
1 TAT-TAATAAAATAATAATAAAATATC
66142666 AAAATATCTC
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
26 7 0.17
27 32 0.78
28 2 0.05
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (27 bp):
TATTAATAAAATAATAATAAAATATCT
Found at i:66142619 original size:24 final size:24
Alignment explanation
Indices: 66142583--66142638 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
66142573 TTCTTTCTTT
66142583 ATATATTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* * * *
66142607 ATATCTTATTAAAGTATTAATAAA
1 ATATATTAATAAAATAATAATAAA
66142631 ATAATATT
1 AT-ATATT
66142639 TATCTAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:66147303 original size:46 final size:44
Alignment explanation
Indices: 66147243--66147418 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 44
66147233 TATTTGGGCA
66147243 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *** * *
66147289 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
* *
66147336 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *
66147382 CCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
66147419 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:66147398 original size:93 final size:93
Alignment explanation
Indices: 66147239--66147410 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
66147229 AGGATATTTG
* * * *
66147239 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
66147304 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGCCCGAGTTCGAGAGATGTAACTA
* * *
66147332 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
66147397 TTGAGCCCGAGTTC
66 TTGAGCCCGAGTTC
66147411 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGCCCGAGTTCGAGAGATGTAACTA
Found at i:66153079 original size:22 final size:23
Alignment explanation
Indices: 66153043--66153085 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
66153033 ACATAAAACC
66153043 GTTATAATATAAGCTTGTTAACA
1 GTTATAATATAAGCTTGTTAACA
66153066 GTTATAA-ATAAGCTTGTTAA
1 GTTATAATATAAGCTTGTTAA
66153086 GTGTCAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (23 bp):
GTTATAATATAAGCTTGTTAACA
Found at i:66153096 original size:22 final size:22
Alignment explanation
Indices: 66153051--66153097 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
66153041 CCGTTATAAT
* *
66153051 ATAAGCTTGTTAACAGTTATAA
1 ATAAGCTTGTTAACAGTCAGAA
**
66153073 ATAAGCTTGTTAAGTGTCAGAA
1 ATAAGCTTGTTAACAGTCAGAA
66153095 ATA
1 ATA
66153098 CATTAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (22 bp):
ATAAGCTTGTTAACAGTCAGAA
Found at i:66155485 original size:17 final size:16
Alignment explanation
Indices: 66155463--66155502 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
66155453 TATAATAATA
66155463 AATAATTTTAATATTTT
1 AATAATTTT-ATATTTT
66155480 AATAA-TTTATATTTT
1 AATAATTTTATATTTT
66155495 -ATAATTTT
1 AATAATTTT
66155503 TAAAAGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 10 0.45
16 3 0.14
17 5 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATAATTTTATATTTT
Found at i:66155498 original size:14 final size:15
Alignment explanation
Indices: 66155463--66155501 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 15
66155453 TATAATAATA
66155463 AATAATTTTAATATTTT
1 AATAA-TTT-ATATTTT
66155480 AATAATTTATATTTT
1 AATAATTTATATTTT
66155495 -ATAATTT
1 AATAATTT
66155502 TTAAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.32
15 7 0.32
16 3 0.14
17 5 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATAATTTATATTTT
Found at i:66156131 original size:20 final size:19
Alignment explanation
Indices: 66156106--66156151 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
66156096 ATTGATGTAT
66156106 AAAAATTAAATTTTAACTAC
1 AAAAATTAAATTTTAAC-AC
66156126 AAAAA-TAAATTTTAACAC
1 AAAAATTAAATTTTAACAC
*
66156144 TAAAATTA
1 AAAAATTA
66156152 GATTATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 6 0.25
19 13 0.54
20 5 0.21
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTAAATTTTAACAC
Found at i:66157614 original size:10 final size:10
Alignment explanation
Indices: 66157599--66157624 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
66157589 TGTACATTTC
66157599 TTTTTTTCCT
1 TTTTTTTCCT
66157609 TTTTTTTCCT
1 TTTTTTTCCT
66157619 TTTTTT
1 TTTTTT
66157625 ATTTTTTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTCCT
Found at i:66161274 original size:26 final size:26
Alignment explanation
Indices: 66161239--66161289 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
66161229 AATGTGAAAG
*
66161239 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
66161265 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
66161290 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:66161424 original size:105 final size:104
Alignment explanation
Indices: 66161162--66161528 Score: 611
Period size: 102 Copynumber: 3.6 Consensus size: 104
66161152 TTGTATATAA
** *
66161162 AGGGGTTGCTGTGTGCTGATTCCCCGATTCA-TGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
66161225 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66161264 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
66161328 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
66161368 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
66161433 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
66161470 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
66161529 ATAACGGTTA
Statistics
Matches: 253, Mismatches: 7, Indels: 10
0.94 0.03 0.04
Matches are distributed among these distances:
101 4 0.02
102 148 0.58
103 27 0.11
104 31 0.12
105 43 0.17
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:66168388 original size:24 final size:25
Alignment explanation
Indices: 66168346--66168393 Score: 80
Period size: 24 Copynumber: 1.9 Consensus size: 25
66168336 AATGTGAAAG
66168346 GGGGTTGCTATGTGCTGATTCCCCCA
1 GGGGTTGC-ATGTGCTGATTCCCCCA
66168372 GGGGTTGC-TGTGCTGATTCCCC
1 GGGGTTGCATGTGCTGATTCCCC
66168394 GATTCATTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 14 0.64
26 8 0.36
ACGTcount: A:0.08, C:0.27, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGGTTGCATGTGCTGATTCCCCCA
Found at i:66168593 original size:27 final size:26
Alignment explanation
Indices: 66168552--66168604 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
66168542 AATGTGAAAG
*
66168552 GGGGTTGCTATGTGCTGATTCTCCCGA
1 GGGGTTGCTAAGTGCTGATTC-CCCGA
66168579 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
66168605 TTCAGCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:66168615 original size:104 final size:103
Alignment explanation
Indices: 66168268--66168636 Score: 600
Period size: 104 Copynumber: 3.6 Consensus size: 103
66168258 TTGTATATAA
** *
66168268 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
66168333 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
66168371 AGGGGTTGCT--GTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
66168434 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATT-CCCCG
*
66168474 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
66168538 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCTCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTC-CCCG
** *
66168578 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
66168637 ATAACGGTTA
Statistics
Matches: 252, Mismatches: 7, Indels: 13
0.93 0.03 0.05
Matches are distributed among these distances:
101 62 0.25
102 24 0.10
103 25 0.10
104 82 0.33
105 58 0.23
106 1 0.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:66181237 original size:107 final size:107
Alignment explanation
Indices: 66181105--66181319 Score: 362
Period size: 107 Copynumber: 2.0 Consensus size: 107
66181095 TGCTGTGTGC
* *
66181105 TGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCTTTGAAATGTG-AAAGG
1 TGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTGAAATGTGAAAAGG
66181168 GGGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAGTGCTGAT
65 GGGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAGTGC-GAT
* *
66181212 TGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAAGGG
1 TGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAAGGG
66181277 GGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAGTGCGAT
66 GGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAGTGCGAT
66181319 T
1 T
66181320 CCATTGTCTA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
107 56 0.55
108 46 0.45
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (107 bp):
TGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAAGGG
GGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAGTGCGAT
Found at i:66188386 original size:26 final size:26
Alignment explanation
Indices: 66188351--66188401 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
66188341 ATGTGAAAAG
*
66188351 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
66188377 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
66188402 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:66188488 original size:26 final size:26
Alignment explanation
Indices: 66188452--66188504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
66188442 GAAATGTGAA
*
66188452 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
66188478 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
66188504 A
1 A
66188505 TTCAGCGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.23, G:0.34, T:0.28
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:66188515 original size:102 final size:104
Alignment explanation
Indices: 66188167--66188536 Score: 602
Period size: 105 Copynumber: 3.6 Consensus size: 104
66188157 TTGTATATAA
** *
66188167 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
66188232 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCA
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
** *
66188272 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
66188337 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
66188376 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
66188440 TTGAAATGTG-AAA-GGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
** *
66188478 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
66188537 ATAACGGTTA
Statistics
Matches: 254, Mismatches: 9, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
102 79 0.31
103 3 0.01
104 72 0.28
105 100 0.39
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:66196764 original size:30 final size:30
Alignment explanation
Indices: 66196713--66196797 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 30
66196703 TGGCCATGAC
* *
66196713 ACACAGGCATGTGG-TCTACCCGTGTGTCAA
1 ACACGGGCGTGTGGATC-ACCCGTGTGTCAA
*
66196743 ACACGGGCGTGTGGATCACCCGTGTGTCAC
1 ACACGGGCGTGTGGATCACCCGTGTGTCAA
* *
66196773 ACATGAGCGTGTGGATCACCCGTGT
1 ACACGGGCGTGTGGATCACCCGTGT
66196798 AGAAGTTCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
30 47 0.96
31 2 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (30 bp):
ACACGGGCGTGTGGATCACCCGTGTGTCAA
Found at i:66197187 original size:33 final size:33
Alignment explanation
Indices: 66197144--66197210 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
66197134 AGAGCTTAAC
66197144 TATAAAAACATCAAAGTTTCAAACAATCAAAAT
1 TATAAAAACATCAAAGTTTCAAACAATCAAAAT
* *
66197177 TATAAGAACATCAAAGTTTCAAACAATCCAAAT
1 TATAAAAACATCAAAGTTTCAAACAATCAAAAT
66197210 T
1 T
66197211 GAGCTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.54, C:0.16, G:0.04, T:0.25
Consensus pattern (33 bp):
TATAAAAACATCAAAGTTTCAAACAATCAAAAT
Found at i:66197208 original size:17 final size:16
Alignment explanation
Indices: 66197149--66197204 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
66197139 TTAACTATAA
66197149 AAAC-ATCAAAGTTTC
1 AAACAATCAAAGTTTC
* *
66197164 AAACAATCAAAATTATA
1 AAACAATCAAAGTT-TC
66197181 AGAAC-ATCAAAGTTTC
1 A-AACAATCAAAGTTTC
66197197 AAACAATC
1 AAACAATC
66197205 CAAATTGAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 10 0.30
18 3 0.09
ACGTcount: A:0.54, C:0.18, G:0.05, T:0.23
Consensus pattern (16 bp):
AAACAATCAAAGTTTC
Found at i:66201201 original size:24 final size:24
Alignment explanation
Indices: 66201169--66201217 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
66201159 TATCCTTAAA
*
66201169 AGTATGTTTTAGGTCTCGTAGACC
1 AGTATGTTTTAAGTCTCGTAGACC
66201193 AGTATGTTTTAAGTCTCGTAGACC
1 AGTATGTTTTAAGTCTCGTAGACC
66201217 A
1 A
66201218 TCATAAGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (24 bp):
AGTATGTTTTAAGTCTCGTAGACC
Found at i:66203874 original size:23 final size:23
Alignment explanation
Indices: 66203831--66203874 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66203821 TTTGTTGTGG
*
66203831 TATTCATTAATGACATTTAAATT
1 TATTCATTAATGACATCTAAATT
*
66203854 TATTCACTTGATGA-ATCTAAA
1 TATTCA-TTAATGACATCTAAA
66203875 CATGCCGAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (23 bp):
TATTCATTAATGACATCTAAATT
Found at i:66213810 original size:24 final size:24
Alignment explanation
Indices: 66213782--66213838 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
66213772 CGTAATTTAT
*
66213782 ACATATTTTTAGCCCATGTTTAGC
1 ACATATTTTTAGCACATGTTTAGC
*
66213806 ACATATGTTTAGCACATGTTTAGC
1 ACATATTTTTAGCACATGTTTAGC
66213830 ACATATTTT
1 ACATATTTT
66213839 ATACTTAGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (24 bp):
ACATATTTTTAGCACATGTTTAGC
Found at i:66213815 original size:13 final size:13
Alignment explanation
Indices: 66213797--66213839 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
66213787 TTTTTAGCCC
66213797 ATGTTTAGCACAT
1 ATGTTTAGCACAT
66213810 ATGTTTAGCAC--
1 ATGTTTAGCACAT
66213821 ATGTTTAGCACAT
1 ATGTTTAGCACAT
66213834 AT-TTTA
1 ATGTTTA
66213840 TACTTAGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.39
12 4 0.14
13 13 0.46
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (13 bp):
ATGTTTAGCACAT
Found at i:66213830 original size:11 final size:11
Alignment explanation
Indices: 66213789--66213833 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
66213779 TATACATATT
*
66213789 TTTAGCCCATG
1 TTTAGCACATG
66213800 TTTAGCACATATG
1 TTTAGCAC--ATG
66213813 TTTAGCACATG
1 TTTAGCACATG
66213824 TTTAGCACAT
1 TTTAGCACAT
66213834 ATTTTATACT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 20 0.65
13 11 0.35
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (11 bp):
TTTAGCACATG
Found at i:66217134 original size:18 final size:18
Alignment explanation
Indices: 66217111--66217152 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
66217101 CCAGGTATGT
66217111 ATGATACCTTTATGGTAG
1 ATGATACCTTTATGGTAG
**
66217129 ATGATATTTTTATGGTAG
1 ATGATACCTTTATGGTAG
66217147 ATGATA
1 ATGATA
66217153 TTATCTAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (18 bp):
ATGATACCTTTATGGTAG
Found at i:66217153 original size:18 final size:18
Alignment explanation
Indices: 66217119--66217154 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
66217109 GTATGATACC
66217119 TTTATGGTAGATGATATT
1 TTTATGGTAGATGATATT
66217137 TTTATGGTAGATGATATT
1 TTTATGGTAGATGATATT
66217155 ATCTAGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (18 bp):
TTTATGGTAGATGATATT
Found at i:66218757 original size:46 final size:46
Alignment explanation
Indices: 66218610--66218738 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
66218600 TGTAACCCGC
* *
66218610 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCAT
* *
66218656 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
66218702 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66218739 TGCTCAATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 1 0.01
46 76 0.99
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:66237277 original size:21 final size:20
Alignment explanation
Indices: 66237250--66237304 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
66237240 GATAAAGTAT
66237250 AAAATAATAAATATGATATTA
1 AAAATAATAAATAT-ATATTA
* *
66237271 TAAATAAT-AGTATATATTA
1 AAAATAATAAATATATATTA
66237290 AAAAT-ATAACATATA
1 AAAATAATAA-ATATA
66237305 ATAAAATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 2 0.07
19 11 0.39
20 8 0.29
21 7 0.25
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (20 bp):
AAAATAATAAATATATATTA
Found at i:66237365 original size:15 final size:15
Alignment explanation
Indices: 66237330--66237378 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
66237320 ACATATAACA
*
66237330 ATATATAT-ATTATT
1 ATATATATAATTACT
66237344 ATATATATAATTACT
1 ATATATATAATTACT
*
66237359 ATTTATATAA-TA-T
1 ATATATATAATTACT
66237372 ATATATA
1 ATATATA
66237379 ATTCTTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 7 0.23
14 10 0.32
15 14 0.45
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATATATAATTACT
Found at i:66248149 original size:43 final size:42
Alignment explanation
Indices: 66248101--66248199 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
66248091 TCCCAAACGT
* *
66248101 GGTCTTACATGTAATCAAACATCGATGCCACTGT-TCCAGATAG
1 GGTCTTACATGTAATCAAACA-CGATGCCAATGTCT-CAGACAG
* * * * *
66248144 GGTCTTACACGAAATCAGATACGATGCCAATGTCTCAGACAT
1 GGTCTTACATGTAATCAAACACGATGCCAATGTCTCAGACAG
66248186 GGTCTTACATGTAA
1 GGTCTTACATGTAA
66248200 AACAGAAGTC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 28 0.61
43 18 0.39
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAACACGATGCCAATGTCTCAGACAG
Found at i:66248248 original size:44 final size:44
Alignment explanation
Indices: 66248165--66248249 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
66248155 AAATCAGATA
***
66248165 CGATGCCAATGTCTCAGACATGGTCTTACATGTAAAACAGAAGT
1 CGATGCCAATGTCTCAGACATGGTCTTACACACAAAACAGAAGT
** *
66248209 CGATGCCAATGTCAT-AGATGTGGTCTTACACACAGAACAGA
1 CGATGCCAATGTC-TCAGACATGGTCTTACACACAAAACAGA
66248250 TATCGAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 33 0.97
45 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (44 bp):
CGATGCCAATGTCTCAGACATGGTCTTACACACAAAACAGAAGT
Found at i:66252545 original size:13 final size:13
Alignment explanation
Indices: 66252521--66252597 Score: 70
Period size: 13 Copynumber: 5.9 Consensus size: 13
66252511 TCACATATCT
66252521 ATATTT-ATATAA
1 ATATTTCATATAA
66252533 ATATTTCATATAA
1 ATATTTCATATAA
* *
66252546 ACACTTCATATAA
1 ATATTTCATATAA
66252559 CAT-TTTCATA-AA
1 -ATATTTCATATAA
*
66252571 TCTATTTCCATATAA
1 -ATATTT-CATATAA
*
66252586 AAATTTCATATA
1 ATATTTCATATA
66252598 TCTATTTCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
12 9 0.17
13 32 0.62
14 9 0.17
15 2 0.04
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATTTCATATAA
Found at i:66252618 original size:27 final size:27
Alignment explanation
Indices: 66252527--66252608 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
66252517 ATCTATATTT
* * *
66252527 ATATAAATATTTCATATAAAC-ACTT-C
1 ATATAAAAATTTCATA-AATCTATTTCC
* *
66252553 ATATAACATTTTCATAAATCTATTTCC
1 ATATAAAAATTTCATAAATCTATTTCC
*
66252580 ATATAAAAATTTCATATATCTATTTCC
1 ATATAAAAATTTCATAAATCTATTTCC
66252607 AT
1 AT
66252609 TTACTCATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
25 3 0.07
26 16 0.35
27 27 0.59
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (27 bp):
ATATAAAAATTTCATAAATCTATTTCC
Found at i:66257856 original size:13 final size:13
Alignment explanation
Indices: 66257838--66257868 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
66257828 TCCATTAGAA
66257838 CAAATTTTGACAT
1 CAAATTTTGACAT
66257851 CAAATTTTGACAT
1 CAAATTTTGACAT
66257864 CAAAT
1 CAAAT
66257869 CCTCCAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (13 bp):
CAAATTTTGACAT
Found at i:66264297 original size:19 final size:18
Alignment explanation
Indices: 66264273--66264308 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
66264263 ATGAACCTGT
66264273 TGAATTTTAGTTAATTTTA
1 TGAATTTTAGTT-ATTTTA
*
66264292 TGAATTTTGGTTATTTT
1 TGAATTTTAGTTATTTT
66264309 CGACAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (18 bp):
TGAATTTTAGTTATTTTA
Found at i:66266329 original size:22 final size:21
Alignment explanation
Indices: 66266299--66266364 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
66266289 TACAAATTAA
66266299 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
66266321 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
66266342 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
66266361 ATCT
1 ATCT
66266365 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:66266351 original size:19 final size:19
Alignment explanation
Indices: 66266316--66266376 Score: 104
Period size: 19 Copynumber: 3.1 Consensus size: 19
66266306 AGATTACAAG
66266316 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
66266337 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
66266356 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
66266375 AT
1 AT
66266377 ACTTAAAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 31 0.77
20 1 0.03
21 8 0.20
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:66269975 original size:19 final size:19
Alignment explanation
Indices: 66269938--66270037 Score: 159
Period size: 19 Copynumber: 5.3 Consensus size: 19
66269928 CAAGATTACA
66269938 ATATCATATCTTCAAGATTGC
1 ATATCATATC-T-AAGATTGC
66269959 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
66269978 ATATCATATCTAAGATTG-
1 ATATCATATCTAAGATTGC
*
66269996 -TATCATATCTAAGATTGA
1 ATATCATATCTAAGATTGC
66270014 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
66270033 ATATC
1 ATATC
66270038 CTTAAAGATT
Statistics
Matches: 76, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
17 17 0.22
19 48 0.63
20 1 0.01
21 10 0.13
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:66270006 original size:36 final size:37
Alignment explanation
Indices: 66269929--66270037 Score: 148
Period size: 36 Copynumber: 2.8 Consensus size: 37
66269919 TTAAATCTCC
*
66269929 AAGATTACAATATCATATCTTCAAGATTGCATATCATATCT
1 AAGATTGC-ATATCATATC-T-AAGATTG-ATATCATATCT
66269970 AAGATTGCATATCATATCTAAGATTG-TATCATATCT
1 AAGATTGCATATCATATCTAAGATTGATATCATATCT
*
66270006 AAGATTGAATATCATATCTAAGATTGCATATC
1 AAGATTGCATATCATATCTAAGATTG-ATATC
66270038 CTTAAAGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
36 35 0.55
38 11 0.17
39 1 0.02
40 10 0.16
41 7 0.11
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (37 bp):
AAGATTGCATATCATATCTAAGATTGATATCATATCT
Found at i:66270925 original size:220 final size:220
Alignment explanation
Indices: 66270366--66280289 Score: 13274
Period size: 220 Copynumber: 45.4 Consensus size: 220
66270356 TGTCATGTTG
* * * ** * * ** * *
66270366 ATGTTTTCGATCTTCTCTCTGTCGAATACAGAGATGTCAAATCCGCTACCTTTGATTCGTTC-CT
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG-TTTCTTCGATTTGTTCTC-
* * ** * *
66270430 TGACAATATAGAGATGTCAAATCATCTTGGATCTGCTTCAGCATAAACACATAAAGGTCAGATCT
64 TGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCT
* * * ** *
66270495 GCTATGTTTTCGATTTGCTCCTTGAAAACACAAGGATGCTGAATCATCTTGGATCTGCTTCAATG
129 GCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATG
* *
66270560 TGAAAAATATCCGAAGGTCAGATCTGCT
194 TG-AAAACATCCAAAGGTCAGATCTGCT
* * * * *
66270588 ATGTCTTCGATCTACTCTCCCTCGAATATGGAGATGCCAAATCTGTTTATTC-A-AT-TTAT-T-
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66270648 -C--T-CAGAGATGTCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66270709 TGTGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCCTCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66270774 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * *
66270799 ATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAGATCTATTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66270864 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTAC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66270929 TATGTCTTC-ATTTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTTGATGT
131 TATGTCTTCGA-TTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
66270993 GAAAACATCCAAAGGTCAGATCTGCT
195 GAAAACATCCAAAGGTCAGATCTGCT
* *
66271019 ATGTCTTCGATCTGCTCTCCGTCGAATATGGGGATGGCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66271084 ACAATACAGAGATGCGAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66271149 TATGTCTTCGATTTGCACCTTGTAAACACAAGAATGCAAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66271214 ACAACATCCAAAGGTCGGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * * *
66271239 ATGTCTTCGATCTGCTCTCCATCGAATATGGTGATGCCAAATCTGTTTCTTCGTTTTGTTCCCTA
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * * *
66271304 ACAAAACAGAGATGCCAAATCATCTCGGATCTACTTCAGTGTAAACACTTGAAGGCCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * *
66271369 TATGTATTCGATTTGCTCCTTGTAAACACAAGAAAGCCAAATCATCTTAGACCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66271434 AAAACATCCAACGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * **
66271459 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAAATCTGTTTCTTCAATCCGTTCTCT
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCC-AAATCTGTTTCTTCGATTTGTTCTCT
* *
66271524 GACAATACAGAGATGCCAAATCATCTTGGATCCGCTTCAGTGTACACACCTGAAGGTCAGATCTG
65 GACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTG
* * *
66271589 TTATGTATTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATATTGGATCTGCTTCGATGT
130 CTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
* *
66271654 GAAAACATCCAAAGGTTAGATCTACT
195 GAAAACATCCAAAGGTCAGATCTGCT
* * * * *
66271680 ATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATGTCAGATCTGTTTCTTTGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66271745 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACTTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * *
66271810 TATGTCTTCAATTTGCTCCTTGTAAACACAAGAATTCCAAATCATCTTGAATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66271875 AAAACATCCAAAGGTTAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* **
66271900 ATGTCTTCGATCTGCTCTCCGTCGAATATGGGGATGAAAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * * *
66271965 ACAATACAGAGATGCCAAATCATCATGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * *
66272030 TATGTCTTCGATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTGGATCTACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66272095 AAATCATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * *
66272120 ATGTCTTCGATCTTCTCTCCATCGAATATAGAGATGCCAAATATGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66272185 ACAATACAGAGAGGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAATGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66272250 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGGTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66272315 AAAACA-CATAAAGGTCAGATCTGCT
196 AAAACATC-CAAAGGTCAGATCTGCT
* * * *
66272340 ACGTCTTCGATCTACTCTCCGTTGAATATGGGGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
** * * * * * *
66272405 ACAATACAGAGACACCAAATCATCTTGGGTCTGCTTCAGTCTAAACAGCTGCAGGTCAAATCTAC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66272470 TATGTCTTCGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66272535 AAAACA-CACAAAGGTCAGATCTGCT
196 AAAACATC-CAAAGGTCAGATCTGCT
* * * * * *
66272560 ACGACTTCGATCTACTCTCTGTTGAATATGGGGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* ** * ** * * *
66272625 ACAATACAAAGACACCAAATCATCTTGGGTCTGCTTCAGTGTAAACAGTTGCAGGTCAAATCTAC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66272690 TATGTCTTCGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66272755 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * * ** * *
66272780 ATGTCTTCAATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCAATCCGCTCTCTA
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66272845 ACAATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66272910 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66272975 AAAACATCCAAAGGTCAGATCTACT
196 AAAACATCCAAAGGTCAGATCTGCT
* * **
66273000 ACGTCTTCGATCTACTCTCTATCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
** * *
66273065 ACAATACAGAGACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTAC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66273130 TATGTCTTCGATTTGCTCCATGTAAAC-CAAAGAATGCCAAATCATCTTAGATCTGCTTCGATGT
131 TATGTCTTCGATTTGCTCCTTGTAAACAC-AAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
*
66273194 GAAAACATCCAAAGATCAGATCTGCT
195 GAAAACATCCAAAGGTCAGATCTGCT
* * *
66273220 ATGTCTTCGATCTGCTCTCCGTCAAATGTGGAGATGCCCAATCTG------C-------TCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66273272 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACTTGAAGGCCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * *
66273337 TATGTATTCGATTTGCTCCTTGTAAACACAAGAAAGCCAAATCATCTTGGACCTGCTTTGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66273402 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * **
66273427 ATGTCTTCGATCTCCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * * * *
66273492 ACAATAAAGAGATGCCAAATAATCTTGGATCCT-CTTCAGTTTAAACGCCTGAAGGCCAAATCTG
66 ACAATACAGAGATGCCAAATCATCTTGGAT-CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTG
* *
66273556 TTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATTTGCTTCGATGT
130 CTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
* ** *
66273621 GAAAGCATCCAAAGGTTTGATCTACT
195 GAAAACATCCAAAGGTCAGATCTGCT
* * * * * * *
66273647 ATGCCTTCGATCTGCTCTCCCTTGAATATAGAGATGTCAAATTTGTTTCTTCAATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66273712 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTCAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66273777 TATGTCTTCAATTCT-CTCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGCTTCGATGT
131 TATGTCTTCGATT-TGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
*
66273841 GAAAACATCCAAAGGTTAGATCTGCT
195 GAAAACATCCAAAGGTCAGATCTGCT
* **
66273867 ATGTCTTCGATCTGCTCTCCGTCGAATATGGGGATGAAAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66273932 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * **
66273997 TATGTCTTCGATTTTCTTCTTGTAAACAAAATAATGCCAAATCATTTTGGATCCACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66274062 AAATCGTCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * *
66274087 ATGTCTTCGATCTTCTCTCCATCGAATATAGAGATGCCAAATATGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
*
66274152 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66274217 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
**
66274282 AAAACATATAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * * * *
66274307 ACGTGTTCGATCTACTCTCCGTTGAATATGGAGATGCCAAATCTATTTCTTCGATTTATTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
** * * * * *
66274372 ACAATACAGAGACACCAAATCATGTTGGGTCTGCTTCAGTGTAAACACCTGAAAGTCAAATCTAC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * *
66274437 TATGTCTTCGATTTTCTCCTTGTAAACACAAGAATGCCAAATCAACTTGGATCTGATTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66274502 AAAACATCCAAATGTCAGATCTGCC
196 AAAACATCCAAAGGTCAGATCTGCT
* * * * * * * ** *
66274527 ATGTCTTTGATCTGTTCCCCGTCAAATATGGAGATGCCAAATTTTTTTCTTCAATCCGCTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66274592 ACAATACAGAGATGCCAAATCATCTAGGCTCTGCTTCACTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
** *
66274657 TATGTCTTCGATTTGCTCCTTGTAAACACAA-AATGCCAAAT-ATCTTGTTTCTGCTTTGATGT-
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66274719 AAAACAACCAAAGGTCA-ATTTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * * *
66274743 ATGTTTTCGATCTGCTCTCCGTCGAATATGGGGATGACAAATTTTTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66274808 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * *
66274873 TATGTCTTCGATTTGCTTCTTGTAAACACAATAATGCCAAACCATTTTTGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* * *
66274938 AAATCGTCCAATGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * **
66274963 ATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATGTGAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66275028 ACAATACAGTGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACA-CTAAAGGTCAGA--TGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66275090 TATGTCTTC-AATT--TCCTTGTAAACAAACACAAGAATGCCAAATCAT-TTGAATCTGCTTCGA
131 TATGTCTTCGATTTGCTCCTTGT----AAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGA
*
66275151 TGTGAAAACATCCAAAGGTTAGATCTGCT
192 TGTGAAAACATCCAAAGGTCAGATCTGCT
* *
66275180 ATGTCTTCGATCTGCTATCCGTCGAATATGGGGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66275245 ACAATACAGAGATG-CAAATCATCTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66275309 TATGTCTTCGATTTGCT-CTTGTAAACACAATAA-GCCAAATCAT-TTGGATCTGC-TCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66275370 AAAATCGT-CAAAGGTCAGATCTGCT
196 AAAA-CATCCAAAGGTCAGATCTGCT
*
66275395 ATGTCTTCGATCTGCTCTCCATCGAATAT-G-GATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66275458 ACAATACAGAGATG-CAAATCATCTT-GATCTACTTCAGTGTAAA-AACT-AAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * *
66275519 TATGTCTTCGATTTGCTTCTTG-AAACACAATAATGCCAAATCAT-TTGGA--TACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* * *
66275580 AAATCGTGCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66275605 ATGTCTTCGATCT-CTCTCCATCGAATATAGAGATGCCAAA--TGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66275667 ACAATACAGAGATGGCAAATCAT-TTGGATCTACTTCA--GTAAACAACTAAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66275729 TATGTCTTCGATTTGCT-CTTGTAAACACAAGAATGCCAAATCAT-TTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66275792 -AAACGTCCAAAGGTCAGATCAGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66275816 ATGTCTTCGATCT-CTCTCCATCGAATATGGAGATGCCAAATCTCTTTCTTCGATTT-TTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66275879 ACAATACAGAGATGGCAAATCATCTTGGATCTACTT-AGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * *
66275943 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCGAAATCATCTTAGATATGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66276008 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66276033 ACGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66276098 ACAATATAGAGAT--CAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* ** *
66276161 TATGTCTTCGATTTGCTCCTTGTAAACACAA-AATGCCAAATAAT-TTGTTTCTGCTTTGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66276224 -AAACAACCAAAGGTCAGATCTG-T
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66276247 ATGTCTTCGATCTGCTCTCCGTCGAATATGG-GATGACAAATAT-TTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66276310 ACAATACAGAGATGGCAAATCATCTTGGATCTACTTCAGAGTAAA-A-CTAAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * *
66276373 TATGTCTTC-ATTTGCTTCTTGTAAACACAATAATGCCAAATCAT-TTGGATCTACTTTGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* * *
66276436 AAATCGTCCAATGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66276461 ATGTCTTCGATCTTCTCTCCATCGAATATGG-GATGCCAAATCTG-TTCTT-GATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66276523 ACAATACAGTGATGCCAAATCATCTTGGATCTGCTTCAATGTAAACACCTGAAGGTTAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * *
66276588 TATGTCTTCAATTTACTCCTTGTAAACACAAGAATTCTAAATCATCTTGGATGTACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66276653 AAAACATCCAAAAGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
66276678 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66276743 ACAATACTGAGATGCCAAATCATATTGGATTTTCTTCAGTGTAAACACCTGAA-GTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66276807 TATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66276872 -AAACATCCAAAGGTTAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
*
66276896 ATGTCTTCGATCTGCTCT-C-TCGAATATGGGGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* *
66276959 ACAATACAGAGATGGCAAATCATCTTGGATCTACTTCAGTAGTAAACA-CTGAAGGTCAGATCTG
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGT-GTAAACACCTGAAGGTCAGATCTG
* * * *
66277023 CTATG-CTTCGATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTAGATCTGCTTCGATGT
130 CTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
* * *
66277087 GAAATCGTCCAAAGGTCAGATCAGCT
195 GAAAACATCCAAAGGTCAGATCTGCT
* *
66277113 ATGTCTTCGATCT-CTCTCCATCGAATATGGAGATGCCAAATCTCTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66277177 ACAATACAGAGATGGCAAATCATCTTGGATCTACTTTAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66277242 TATGTCTTCGATTTGCT-CTTGTAAACACAAGAATGCCAAATCATCTTAGATATGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66277306 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66277331 ACGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTG--CTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66277394 ACAATATAGAGAT--CAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCA-ATCTAC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66277456 TATGTCTTCGATTT-CT-CTTGTAAACACAAGAATGCCAAATCATCTT---TCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66277516 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * * ** * *
66277541 ATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCAATCCGCTCACTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * * * *
66277606 ACAATACAGAGATGTCAAATCATCTTGGCTCTACTTTAGTGTAAACACCTAAAGGTTAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * *** *
66277671 TATGTCTTCGATTTGCTCATTGTAAACACAAGAATGCCAAATAATCTTCTTTCTGCTTTGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66277736 AAAACAACCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
66277761 ATGTCTTCGATCTGCTCTCCGTCGAATATGGGGATGGCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * * * *
66277826 ACAATACACAGATGCCAAATCATCTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGATCTTC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * *
66277891 TATGTCTTCGATTTGCTTCTTGTAAACACAATAAT-CCAAATCATTTTAGCTCTACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* * *
66277955 AAATCGTCCAATGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * *
66277980 ATGTCTTCGATCT-CTCTCCATCCAATATGCAGATGCCAAATCTG-TTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66278043 ACAATACAGTGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTTAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * * * *
66278108 TATTTCTTCAATTTACTCCTTGTAAACACAAGAATTCTAAATCATC-TAGATGTACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66278172 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
*
66278197 ATGTCTTCGATCTGCTCTCTGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66278262 ACAATACAGAGATGCCAAATCATATTGGATTTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGT
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* *
66278327 TATGTCTTCGATTTGCTCCTTGTGAACACAAGAATGCGAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
66278392 AAAACATCCAAAGGT-AGATCTACT
196 AAAACATCCAAAGGTCAGATCTGCT
* * ** *
66278416 ATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATGTGAAATCTGTTTCTTCGATTTGTTTTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
66278481 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTT-AGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * **
66278545 TATGTCTTCAATTTGCTCCTTGTAAGCACAAGAATTCTAAATCATCTTCG-TCAACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66278609 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
66278634 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66278699 ACAATAGAGAGATGCCAAATCATCTTGGATATGCTTCAGTGTAAACACCTGCAGGTCAAATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * **
66278764 TATGTCTTCAATTTACTCCTTGTAAACACAAGAATTCTAAATCATCTTCGATCAAC-T--ATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
66278826 AAAACAT-CAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
66278850 ATGTCTTCGATCTGCTCTCCG-CGAATATGGAGATGCCAAATCTG-TT-TTCGA-TTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * * *
66278911 ACAATAGAGAGATGCCAAATCATCTTGGATATGCTTCAGTGTAAACACCTGCAGGTCAAATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * *
66278976 TATGTCTTCAATTTACTCCTTGTAGAACACAAGAATTCTAAATCATCTTCGATCTACTTCGATGT
131 TATGTCTTCGATTTGCTCCTTGTA-AACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
66279041 GAAAACATCCAAAGGTCAGATCTGCT
195 GAAAACATCCAAAGGTCAGATCTGCT
66279067 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66279132 ACAATA-GGAGATGCCAAATCATCTTGGATATGCTTCAGTGTAAACACCTGCAGGTCA-ATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * * * * * *
66279195 TATGTCTTCAATTTACTCCTTGTAAACACAAGAATTCTAAATCATCTTCGATCTACTTCGATGTT
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66279260 AAAACATCCAAAGGTTAGATCTACT
196 AAAACATCCAAAGGTCAGATCTGCT
*
66279285 ATGTCTTCGATCT-CTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
*
66279349 ACAATACAGAGATGCCAAATCATCTTGGAT-TGCTTCAGTGTAAACACCTGAAGGTCAGATCTGT
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
66279413 TATGTCTTC-ATTTGCTCCTTGTGAACACAAGAATGCCAAATCATCTT-GATCTGCTTC-ATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* *
66279475 AAAACATCCAAAGGTTAGATCTACT
196 AAAACATCCAAAGGTCAGATCTGCT
* **
66279500 ATGTCTTCGATCTGCTCTCC-TTGAATATGG-GATGTGAAATCTGTTTCTTCGATTT-TTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
66279562 ACAATACAGAGATGCCAAATCGCGAAATCGATCTTGATCTAC-TCA-TAGTAAACACACTTAAAG
66 ACAATACAGAGATGCCAAAT--C---ATC--T-TGGATCTGCTTCAGT-GTAAACAC-C-TGAAG
* * * * *
66279625 GTCAGATCCT-CTATGGCTTTCGATTTGGCTTCTTGTTAAACACCA-TATGCCAAATCATTTTGG
120 GTCAGAT-CTGCTATGTC-TTCGATTT-GCTCCTTG-TAAACACAAGAATGCCAAATCATCTTGG
* *
66279688 ATCTGCTTCGATGTGAAATCGTACCAAAGGTCAGATCTGCCT
181 ATCTGCTTCGATGTGAAAACAT-CCAAAGGTCAGATCTG-CT
* * * *
66279730 TTGGCTTTCCCTTCGATTCCT-CTTTTCCATCGAATATGGAGATGCCTAAATCCTCTTTCTTCGA
1 AT-G---T--CTTCGA-T-CTGC-TCTCCGTCGAATATGGAGATGCC-AAAT-CTGTTTCTTCGA
* * *
66279794 TTTGTTTCTCTGAC-ATACAGAGATGGCAAATCATCTTGGTATCTACTTTAGTGTAAAACACCTG
55 TTTG-TTCTCTGACAATACAGAGATGCCAAATCATCTTGG-ATCTGCTTCAGTGT-AAACACCTG
* *
66279858 AAGGTTTCAGATCTGTTATGTCTTACG-TTT-CT-CTTGTAAACACAAGAATGCGAAATCATCTT
117 AAGG--TCAGATCTGCTATGTCTT-CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTT
* *
66279920 AGATATGCTTCGATG-GAAAACAT-C-AAGGTCCAGATCTGCT
179 GGATCTGCTTCGATGTGAAAACATCCAAAGGT-CAGATCTGCT
* * * * *
66279960 AACGTCTTCGATCTACTCT-CGTCCGAAAAT-GA-ATGCCAAAAATCTGTTT-TT-TAGTTGTTC
1 -ATGTCTTCGATCTGCTCTCCGT-CGAATATGGAGATGCC--AAATCTGTTTCTTCGATTTGTTC
* ***
66280020 TCTGACAATATAGAGACATC-AATCA-CTTGGAGTCTGCTTCAAAGTGGCT-AA-ACCTGAAGGT
62 TCTGACAATACAGAGATGCCAAATCATCTTGGA-TCTGCTTC--AGT-G-TAAACACCTGAAGGT
* * *
66280081 -AAATCTACTAATGT-TGTCGATTT-CTCTGTCTTGGTAAACCCAAGAATGGCCAAATCATCTTG
122 CAGATCTGCT-ATGTCT-TCGATTTGCTC---CTT-GTAAACACAAGAAT-GCCAAATCATCTTG
66280143 GATCTGCTTCGATGTGAAAACATCCAAAGGCTCCAGATCTGCT
180 GATCTGCTTCGATGTGAAAACATCCAAAGG-T-CAGATCTGCT
* * *
66280186 ATGTCTTCGACTGTGACTGCTCTCCGATCGTAAATATGGAGATGCC-AATTTGGTTTCTTCAAAT
1 ATGTCTTCGA---T--CTGCTCTCCG-TCG--AATATGGAGATGCCAAATCT-GTTTCTTCGATT
* * *
66280250 CGCTGTCACTGACGAATACAGAGATGTCAAATCATCTTGG
57 TG-T-TCTCTGAC-AATACAGAGATGCCAAATCATCTTGG
66280290 GCTCTAACTT
Statistics
Matches: 8685, Mismatches: 806, Indels: 404
0.88 0.08 0.04
Matches are distributed among these distances:
207 187 0.02
208 6 0.00
209 66 0.01
210 249 0.03
211 182 0.02
212 370 0.04
213 263 0.03
214 237 0.03
215 273 0.03
216 483 0.06
217 772 0.09
218 782 0.09
219 601 0.07
220 3484 0.40
221 263 0.03
222 74 0.01
223 34 0.00
224 8 0.00
225 23 0.00
226 33 0.00
227 18 0.00
228 11 0.00
229 14 0.00
230 17 0.00
231 14 0.00
232 5 0.00
233 22 0.00
234 35 0.00
235 12 0.00
236 19 0.00
237 21 0.00
238 40 0.00
239 14 0.00
240 9 0.00
241 5 0.00
242 14 0.00
243 16 0.00
244 9 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
AAAACATCCAAAGGTCAGATCTGCT
Found at i:66271035 original size:89 final size:87
Alignment explanation
Indices: 66270875--66271035 Score: 236
Period size: 89 Copynumber: 1.8 Consensus size: 87
66270865 CAATACAGAG
*
66270875 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTACTATGTCTTCAT
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTACTATGTCTTCAT
*
66270940 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* *
66270962 ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGC-TTCA-GTGAAAACA-CCTAAAGGTCAGATCTACTATGTCTT
66271026 CGA-TCTGCTC
63 C-ATTCTGCTC
66271036 TCCGTCGAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
87 23 0.35
88 3 0.05
89 37 0.56
90 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTACTATGTCTTCAT
TCTGCTCCTTGTAAACACAAGA
Found at i:66271696 original size:89 final size:87
Alignment explanation
Indices: 66271536--66271696 Score: 198
Period size: 89 Copynumber: 1.8 Consensus size: 87
66271526 CAATACAGAG
* * * * **
66271536 ATGCCAAATCATCTTGGATCCGCTTCAGTGTACACACCTGAAGGTCAGATCTGTTATGTATTCGA
1 ATGCCAAATCATATTGGATCCGCTTCAGTGAAAACACCTAAAGGTCAGATCTACTATGTATTCGA
*
66271601 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* * *
66271623 ATGCCAAATCATATTGGATCTGCTTCGATGTGAAAACATCC-AAAGGTTAGATCTACTATGTCTT
1 ATGCCAAATCATATTGGATCCGCTTC-A-GTGAAAACA-CCTAAAGGTCAGATCTACTATGTATT
66271687 CGATCTGCTC
63 CGATCTGCTC
66271697 TCCCTTGAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
87 24 0.39
88 1 0.02
89 34 0.56
90 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (87 bp):
ATGCCAAATCATATTGGATCCGCTTCAGTGAAAACACCTAAAGGTCAGATCTACTATGTATTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:66278260 original size:44 final size:43
Alignment explanation
Indices: 66278200--66278282 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
66278190 ATCTGCTATG
* **
66278200 TCTTCGATCTGCTCTCTGTCGAATATGGAGATGCCAAATCTGTT
1 TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGTT
* *
66278244 TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
66278283 ATATTGGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 17 0.50
44 17 0.50
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTT
Found at i:66278432 original size:88 final size:87
Alignment explanation
Indices: 66278273--66278432 Score: 207
Period size: 88 Copynumber: 1.8 Consensus size: 87
66278263 CAATACAGAG
* * * **
66278273 ATGCCAAATCATATTGGATTTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGTTATGTCTTCGA
1 ATGCCAAATCATATTGGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTACTATGTCTTCGA
*
66278338 TTTGCTCCTTGTGAACACAAGA
66 TCTGCTCCTTGTGAACACAAGA
* *
66278360 ATGCGAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGGT-AGATCTACTATGTCTT
1 ATGCCAAATCATATTGGATCTGCTTC-A-GTGAAAACA-CCTAAAGGTCAGATCTACTATGTCTT
66278423 CGATCTGCTC
63 CGATCTGCTC
66278433 TCCCTTGAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
87 23 0.37
88 24 0.39
89 13 0.21
90 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATATTGGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTACTATGTCTTCGA
TCTGCTCCTTGTGAACACAAGA
Found at i:66278686 original size:44 final size:43
Alignment explanation
Indices: 66278637--66278719 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
66278627 ATCTGCTATG
*
66278637 TCTTCGATCTGCTCTCCGTCGAATATG-GAGATGCCAAATCTGTT
1 TCTTCGATCTGCTCTCCGAC-AATA-GAGAGATGCCAAATCTGTT
* * *
66278681 TCTTCGATTTGTTCTCTGACAATAGAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCGACAATAGAGAGATGCCAAATC
66278720 ATCTTGGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.03
43 17 0.50
44 16 0.47
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCCGACAATAGAGAGATGCCAAATCTGTT
Found at i:66370983 original size:222 final size:218
Alignment explanation
Indices: 66369267--66374760 Score: 3748
Period size: 222 Copynumber: 24.9 Consensus size: 218
66369257 CAAATAGTGC
*
66369267 ATACAGAGATGCCAAATCATCTTGGATCTGCTTTTAGTGTAAACACCTG-AGGTCAGATCTGCTA
1 ATACAGAGAT-CCAAATCATCTTGGATCTGC-TTCAGTGTAAACACCTGAAGGTCAGATCTGCTA
* * * * * **
66369331 TGTCTTC-ATTTGCTCCTTGTAAGCACAAGAATTCTAAATCATCTTCGATTCAACGTTCGATGTG
64 TGTCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATCTTCGA-TCTGC-TTCGATGTG
66369395 --AAC-TCCAAAGGTCAGATCTG-TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGA-GCCAA
126 AAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
*
66369455 ATCTGTTTCTTCGATTT-TGCTCTGACA
191 ATCTGTTTCTTCGATTTGTTCTCTGACA
* * * *
66369482 ATAGAGAGATGCCAAATCA-CTTGGATATGCTTCAGTGTAAAACACCTGCAGGTCCAAATCT-CT
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTGT-AAACACCTGAAGGT-CAGATCTGCT
* ** * *
66369545 ATGTCTTCAATTTACTCCCTTGTAAACACAAGAAT-CTGAAATCATCTTC-ATCTACTTCGAAT-
63 ATGTCTTCGATTT--TCTTTTGTAAACACAAGAATGC-CAAATCATCTTCGATCTGCTTCG-ATG
*
66369607 TGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCT-ATCTCCGTCG-ATATGGAAGAT-C
124 TGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGG-AGATGC
66369669 C-AA-CTGTTTCTTCGATTTGTTCTCTGA-A
188 CAAATCTGTTTCTTCGATTTGTTCTCTGACA
* * * *
66369697 ATAGA-AGATGCCAAATCATC-TGGATATGCTTCAGTGTAAACACCTGCA-GTCAAATCTGGCTA
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCT-GCTA
* * * * *
66369759 -GTCTTCAATTTACTCCTTGTAAACACAAGAAT-TC-AATCATCTTCCGATCATACTTCGATGTG
64 TGTCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATCTT-CGATC-TGCTTCGATGTG
*
66369821 AAAAACATCCAAAGGTCA-ATC-GCTA-GTCTTCGATC-CCTCTCCGTCG-ATAT-GAGATGCCA
126 -AAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCC-
*
66369880 AAATCTATTTCTTCGATTTGTTCTCTGACA
189 AAATCTGTTTCTTCGATTTGTTCTCTGACA
* *
66369910 ATACAGAGATGCCACATCATCTTGGAT-TGCTTC-GTGTAAACACCTGAAGGTCAGATCTGTTTT
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTG--CT
* * ** *
66369973 ATGTCTTCGA-TTGCTCCTTGGGAACACTAAGAATGCCAAATCAT-TT-GATCTGCTTCCAATGT
63 ATGTCTTCGATTTTCT-TTTGTAAACAC-AAGAATGCCAAATCATCTTCGATCTGCTT-CGATGT
* * * *
66370035 G--AACATCCAAAGGTTAGATCTAACTATGTCTTCGATCTGCTCTCCCTTG-ATATGGAGAT---
125 GAAAACATCCAAAGGTCAGATCT-GCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCC
* *
66370094 TAATCTG-TT-TTCGATTTATTCTCTGACAA
189 AAATCTGTTTCTTCGATTTGTTCTCTGAC-A
* * * *
66370123 ATACAGAAAATGCAAAATCATC-TGGATCTGCTTGAGTGTAAACACCTGGAAGGTTCAGATGTGC
1 ATACAG-AGAT-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCT-GAAGG-TCAGATCTGC
* * * * * *
66370187 -ACTGCTCGTC-AATTGCTCCTTGTAAACACAAGAATGCC-ATTCATCTT-GAATCTGCCTCGAT
62 TA-TG-TCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATCTTCG-ATCTGCTTCGAT
* * *
66370248 AGGTGAAAA-AACC-AAGGTTAGATCTGCTATGTCTTCGA---GCTAT---T-G-----GGAGAT
123 --GTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGAT
*
66370299 GACAAAATC-GTTTCTTCGATTTGGGTTTCTCTGACA
186 G-CCAAATCTGTTTCTTCGATTT--G-TTCTCTGACA
* * * * *
66370335 AT-CAGAGATGGCAAATTATCTTGGATCTACCTTCA-TAGT-AACAACTTAAAGGTC-GATCTGC
1 ATACAGAGAT-CCAAATCATCTTGGATCT-GCTTCAGT-GTAAAC-ACCTGAAGGTCAGATCTGC
* * * ** * *
66370396 TATGCCTTCGA--TGCTTCTGTAAACACAA-TTTGCCAAAATCAT-TTGGGGATCTGCTTTGATG
62 TATGTCTTCGATTTTCTTTTGTAAACACAAGAATGCC-AAATCATCTT--CGATCTGCTTCGATG
* * * * * *
66370457 TGAAATCGTCCCAAGGTCAAATCTGC-ATGTCTTCGATCTTCTCTCCAGTCGAATATGTTTTTAG
124 TGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCC-GTCGAATATG----GAG
*
66370521 ATGCC-AATCTATTTCTTCGA-TTGTT-TCTTGCACAA
184 ATGCCAAATCTGTTTCTTCGATTTGTTCTC-TG-AC-A
* *
66370556 ATACAAGAGATGCCCCAAAATCAGTCTTGGATCTACTTCCAGCAGT-AACACCGGTGAAGGTTCA
1 ATAC-AGAGAT---CC-AAATCA-TCTTGGATCTGCTT-CAG-TGTAAACACC--TGAAGG-TCA
* * * * * *
66370620 GATCTGGCTATGTCTTCGA-TTGCTCCTTGTAAAAAC-AGAATGCGAAATC-TCTTTAGATATGC
55 GATCT-GCTATGTCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATC-TTCGATCTGC
* * *
66370682 TTCGAT-TGAAAA-ATCCAAAGGTTTAGA-CTGCTACGTCTTC-ATCTACTCTCCGTCGAATATG
117 TTCGATGTGAAAACATCCAAAGG-TCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATG
66370743 GAGATG-CAAATCTGTTTCTTTCGATTTGTTCTCTGACA
181 GAGATGCCAAATCTGTTTC-TTCGATTTGTTCTCTGACA
* * * * *
66370781 ATATAGAGAATTCAAATCATCTTGGATCTG-TTCAGTG-AAACACCGGAAGGTCAAATTCTACCT
1 ATACAGAG-ATCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGA-TCT-GCT
*
66370844 ATGTCTTCGATTTTCGTTTTGTAAACACGAAGAATGCCAAATCATCTTGGGATCTGCATTCGATG
63 ATGTCTTCGATTTTC-TTTTGTAAACAC-AAGAATGCCAAATCATCTT-CGATCTGC-TTCGATG
* *
66370909 TGCAAAACAT-CAAAGGTGAGATCTGCTATGTCTTCGATC-GCTCTCCGTC-AAT-CGGAGATGC
124 TG-AAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGC
* * ** *
66370970 CAAATTTTGTTTCTTCAATCCGCTCTCTGACA
188 CAAA-TCTGTTTCTTCGATTTGTTCTCTGACA
* * ** * *
66371002 ATACAGAGATGCAAATTCA-CTTGGCTCCCAACTTTAG-GTAAACA-CTAAAGGTCAGATCTGCC
1 ATACAGAGATCCAAA-TCATCTTGGAT--CTGCTTCAGTGTAAACACCTGAAGGTCAGATCTG-C
* * * * **
66371064 TATGT-TTCGATTGCTCCTTTGTAAACACAATTTAATGCCAAATAATCTTCTTTCTGC-TCTG-T
62 TATGTCTTCGATT-TTCTTTTGTAAACACAA--GAATGCCAAATCATCTTCGATCTGCTTC-GAT
* * * *
66371126 GTGAAAAACAACCAAAGGTCAGATCTTGCTATGTCTT-TATACTGCTCTCCGTGCGAATTTGGGG
123 GTG-AAAACATCCAAAGGTCAGATC-TGCTATGTCTTCGAT-CTGCTCTCCGT-CGAATAT-GGA
** *
66371190 GATGGAAAATCTGTTTCTTCGATTTGGTCTCCTGACA
183 GATGCCAAATCTGTTTCTTCGATTTGTTCT-CTGACA
* * * *
66371227 ATACAGAGATACCAAATCA-CTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGAATCTGCTA
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAG-ATCTGCTA
* * *
66371291 TGTCTTCGATTTACTTCTTGTAAACACAATAATGCCAAATCAT-TTTGA-CTGCTTCGATGTCG-
64 TGTCTTCGATTTTCTT-TTGTAAACACAAGAATGCCAAATCATCTTCGATCTGCTTCGATGT-GA
* * * * * * * *
66371353 AATCATCCAATGGGTCAGATTCTACT-TGTCTT-TATCTTCTCTTCCATTCAAATATGCAGATGC
127 AAACATCCAA-AGGTCAGA-TCTGCTATGTCTTCGATCTGCTC-TCC-GTCGAATATGGAGATGC
66371416 C-AATCTG-TTCGTTCGATTTGTTCTCTTGAACA
188 CAAATCTGTTTC-TTCGATTTGTTCTC-TG-ACA
* *
66371448 ATACAGTGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAA-GTTAGATCTGCTAT
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTAT
* * ** ** * * * * *
66371512 TTCTTCAATTTAATCCTGTAAAC-CAAGAATTCTAAATCATCTTGGATGTACTTCGATGTG-AAA
65 GTCTTCGATTTTCTTTTGTAAACACAAGAATGCCAAATCATCTTCGATCTGCTTCGATGTGAAAA
*
66371575 CATCCAAAGGGTCAGATCTGCTATGTAAC-TCGAATCTTGCTCTCCTATCGAATATGGAGATGCC
130 CATCCAAA-GGTCAGATCTGCTATGT--CTTCG-ATC-TGCTCTCC-GTCGAATATGGAGATGCC
66371639 -AATCTGTTTCTTCGATTTGTTTCTCTGACA
189 AAATCTGTTTCTTCGATTTG-TTCTCTGACA
* * * *
66371669 ATACAGAGATTGCCAAA-CATATTGGATTTTTCTTCAGTTGT-AACACCT-AAGGTCAGATCTGT
1 ATACAGAGA-T-CCAAATCATCTTGGA-TCTGCTTCAG-TGTAAACACCTGAAGGTCAGATCTGC
* *
66371731 TATGTCTTCGGATTTGCTCCTCCCCTTCCATTGTGAACA-ACAGAATGCGAAATCATCTT-GATC
62 TATGTCTTC-GA-TT--T--T---CTT---TTGTAAACACA-AGAATGCCAAATCATCTTCGATC
* * * * *
66371794 TCCTTCGATGTGAAAACATCCAAAGGGGTTAGATCTACTATGTCTTC-ATCTGCTCGTCCCTTGA
114 TGCTTCGATGTGAAAACATCCAAA--GGTCAGATCTGCTATGTCTTCGATCTGCTC-TCCGTCGA
** *
66371858 ATATGGAGATGTGACAATCTGTTTCTTC-ATTTGTTTTCTGACA
176 ATATGGAGATGCCA-AATCTGTTTCTTCGATTTGTTCTCTGACA
*
66371901 ATACA-AGATGCCAAAATCATCTTGGATCTG-TT--GTCGTAAAACACCTGCAGGTCCAGA-C-G
1 ATACAGAGAT-CC-AAATCATCTTGGATCTGCTTCAGT-GT-AAACACCTGAAGGT-CAGATCTG
* * * * * * **
66371960 CTCATGTCTTCCATTTGCTCCTTGGT-AGCACCAAGAATTCTAAATCATC-TCGATCAACTTCGA
61 CT-ATGTCTTCGATTT--TCTTTTGTAAACA-CAAGAATGCCAAATCATCTTCGATCTGCTTCGA
*
66372023 TGTGAAAACAT-CAAAGGTCAG-TCTG-TATGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
122 TGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATG
* *
66372085 CCAAATCTGGTTCTTCGAATTTGTTCTCTAACA
187 CCAAATCTGTTTCTTCG-ATTTGTTCTCTGACA
* * *
66372118 ATAGAGAGATGCCAAATTCAT-TCTGGATATGCTTCAGTGTAAACACCTGCAGGTCA-AGTCTGC
1 ATACAGAGAT-CCAAA-TCATCT-TGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGA-TCTGC
* * * * *
66372181 TATGTCTTCAATTTAATC-CTTGTAAACACAAGAATTCTAAATCATCTTCGATCTACTTCGATGT
62 TATGTCTTCGATTT--TCTTTTGTAAACACAAGAATGCCAAATCATCTTCGATCTGCTTCGATGT
* * * *
66372245 GAAAACATCCAAAGGTCAGATCTGCTATGTCTGCGATCTCCTCTCCGTCGGAATAGGGAAATGCC
125 GAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTC-GAATATGGAGATGCC
* *
66372310 AAATCAT-ATTCTTCGATGTGTTCTCTGACA
189 AAATC-TGTTTCTTCGATTTGTTCTCTGACA
* *
66372340 ATACAGAGATGCC-AATCATTTCTTGGATTTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGTT
1 ATACAGAGAT-CCAAATCA--TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTG-C
* * * ** * *
66372404 TATGTC-TCGATTTGC-CTTGTGAACAC-AGAGGGCCAAATCATCTTGGATCTGCTTTCAAATGT
62 TATGTCTTCGATTTTCTTTTGTAAACACAAGAATGCCAAATCATCTTCGATCTGC-TTC-GATGT
* * * *
66372466 GAAAACATCCAAA-GTTAGATTCTTACTATGTCTTCGATCTGCTCTCC-TTGAA-ATGGAGATGG
125 GAAAACATCCAAAGGTCAGA-TC-TGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGC
** *
66372528 CTGATCTGTTTTCTTCGATTTATTCTC-GACA
188 CAAATCTG-TTTCTTCGATTTGTTCTCTGACA
* *
66372559 AT-CA-AGAATGCC-AATCATTCTTGGATCTGCTTTAGTGTAAAAACACTGAAGGTCAGATCTGC
1 ATACAGAG-AT-CCAAATCA-TCTTGGATCTGCTTCAGTGTAAACAC-CTGAAGGTCAGATCTGC
* * * **
66372621 TATGTTCTTCAATTTGCTCCTTGTAAACACAAGAATGCC-AATCATCTTAAAATCT-CTTCGATG
62 TATG-TCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATCTT-CGATCTGCTTCGATG
*
66372684 TGAAAAACATCCAAAGGT-AGATC-GCTATGTGCATTC-ATCTGCTCTCCGTTCG-ATATGGGGA
124 TG-AAAACATCCAAAGGTCAGATCTGCTATGT-C-TTCGATCTGCTCTCCG-TCGAATATGGAGA
* *
66372745 TTGACAAATTTTGCTTTCTTCGATTTGTTCTGCTGACA
185 -TGCCAAA-TCTG-TTTCTTCGATTTGTTCT-CTGACA
* * * * * * * *
66372783 ATACAGAGATGCCAAATAAACTTGGATCTACTTCAGAAGTAAACAACTAAAGGTCATATCAGCTA
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAG-TGTAAACACCTGAAGGTCAGATCTGCTA
* * * * *
66372848 TTTTTTTTTGTTTTTCTTTTTCGATTTGCGTCTGT-AACACAATAATGCCAAATCAT-TTTGAT-
64 --------TG----TC---TTCGATTTTCTTTTGTAAACACAAGAATGCCAAATCATCTTCGATC
** * * * * * * * * * *
66372910 TGCTTTAATGT-TAATCGTCCCATGGTCAAGATCTGCTATGTTTTCAATCCTTCTCTCCCTCTTA
114 TGCTTCGATGTGAAAACATCCAAAGGTC-AGATCTGCTATGTCTTCGAT-CTGCTCTCCGTC-GA
* * * *
66372974 ATATGCAGATACCAAATCTGTTTTCTTTCGATTTATTCTTTGACA
176 ATATGGAGATGCCAAATCTG-TTTC-TTCGATTTGTTCTCTGACA
* * * * *
66373019 A-GCAGTGATGCCAAATCATC-TGGATATGCTTCAGTGTAAACACCTAAAGGTTA-ATCTGCTAT
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTAT
* * *
66373081 GTCTTCAATTTTGCTCATTGTAAACACAAGAATGCCAAATCCATCTT-GATCTGCTTTGATGT-A
65 GTCTTCGATTTT-CT-TTTGTAAACACAAGAATGCCAAAT-CATCTTCGATCTGCTTCGATGTGA
* * * * * * **
66373144 AAACATCCACAGTTTAGATCTAC-ATGTCTTCGATCTGCTCTCCCTTGAATATGGAGATTGTGAA
127 AAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGA-TGCCAA
66373208 ATCTGTTTCTTCGATTTGTT-TCTGACA
191 ATCTGTTTCTTCGATTTGTTCTCTGACA
* *
66373235 ATACAGAGATGCCCAAAAATCATCTTGGATATGCTT-AGTGTAAACACCTGAAGGTCAGATATTG
1 ATACAGAGAT--CC--AAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGAT-CTG
* * * * * * **
66373299 CTATGTCTTC-AATTGCTCCTTGTAAGCACAAGAATTCTAAATCATCTTCGATTCAACTTCGATG
61 CTATGTCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATCTTCGA-TCTGCTTCGATG
66373363 TTGATAAACATTTCCAAAGGTTCAGATCCTGCTATGTCCTTCGATC-GCTCTCCGTTTCGGAATA
124 -TGA-AAACA--TCCAAAGG-TCAGAT-CTGCTATGT-CTTCGATCTGCTCTCCG--TC-GAATA
66373427 TGGAGATGCCAAATCTGTTTCTTCGA-TTGTTCT-TGACCA
179 TGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGA-CA
* * *
66373466 ATAGAGAGATGCCAAATCATCTTGGATATGCTTCAGTGTTAAACACCTGCAGGTCAGATCT-CTA
1 ATACAGAGAT-CCAAATCATCTTGGATCTGCTTCAGTG-TAAACACCTGAAGGTCAGATCTGCTA
* * ** * * * *
66373530 TGTCTTCCAATTTAACCCTTGT-AACACAAGCCGAATTCTAAATCATCTTCGATCTACTTCGATT
64 TGTCTT-CGATTT-TCTTTTGTAAACACAA---GAATGCCAAATCATCTTCGATCTGCTTCGATG
*
66373594 TGAAAACATCCAAA-GTCAGATCTGCTATGTCTTCGATCTCCTCTCCGTCGAATAATGGACGATG
124 TGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT-ATGGA-GATG
*
66373658 CCAAATC-ATTTCTTCGA-TTG-TCTCTGAC-
187 CCAAATCTGTTTCTTCGATTTGTTCTCTGACA
*
66373686 ATACAAGAGATTGCC-AAT-ATCTTGGGATTTGCTTCAGTGTAAACACCTGAAGGTCA-ATCTTG
1 ATAC-AGAGA-T-CCAAATCATCTT-GGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATC-TG
* * * * *
66373748 TTATG-CTTCGATTTGCTCCTTAGTGAAC-CAAGAATGCCAAATCA-CTTGGATCTTATATGCTT
61 CTATGTCTTCGATTT--TCTTTTGTAAACACAAGAATGCCAAATCATCTTCGATC-----TGCTT
* * * *
66373810 CAACTGTGAAAACATTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTC-TTGAATAT
119 CGA-TGTGAAAACA-TCCAAAGGTCAGATCTGCTATGTCT-TCGATCTGCTCTC-CGTCGAATAT
*
66373874 GGAGAGTG--AAATCTGTTTGCTTCGA-TTATTCTCTGACA
180 GGAGA-TGCCAAATCTGTTT-CTTCGATTTGTTCTCTGACA
* * *
66373912 ATACAAAG-CCCAAATCATCTTGGATCTTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGC-AT
1 ATACAGAGATCCAAATCATCTTGGATC-TGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTAT
* * * * *
66373975 GTC-TCAATTTGCTCCTTGTAAATAGAAGAATGCCAAATCATCTT-GAATCTGCTTCGATGTGAA
65 GTCTTCGATTTTCT-TTTGTAAACACAAGAATGCCAAATCATCTTCG-ATCTGCTTCGATGTGAA
* * *
66374038 AACATCCAAAGGTTAGACTCTGCTAATGTCTTCGATCTGCTCTCCGTCGAATATGG-GAGGGACA
128 AACATCCAAAGGTCAGA-TCTGCT-ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGA-TGCCA
* *
66374102 ACTTTCGTTTCTTCGATTTGTTCTCTGACA
190 AATCT-GTTTCTTCGATTTGTTCTCTGACA
* * * * * *
66374132 AT-CAGAGATGCCAAATACAACTTGGATCTACTTCAGAGT-AACAACTAAAGGTCAGATTCGAGC
1 ATACAGAGAT-CCAAAT-CATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGA-TC-TGC
* * * * * **
66374195 TATTGTCTTCGAATTATGCTTCTGTAAA-ACAATAATGCC--ATCCATTTTGGATCTGCTTTAAA
62 TA-TGTCTTCG-ATT-TTCTTTTGTAAACACAAGAATGCCAAAT-CATCTTCGATCTGC-TTCGA
* ** * * * * * *
66374257 TGTTTAAAATGTCCCATGG-CAGATCTGCTATGT-TTCCAATCTTCTCTCCCTCGAATATGCAGA
122 TG-TGAAAACATCCAAAGGTCAGATCTGCTATGTCTT-CGATCTGCTCTCCGTCGAATATGGAGA
* * *
66374320 TACCAAATCTGTTTTCTTCGA-TTATTCTTTGAC-
185 TGCCAAATCTG-TTTCTTCGATTTGTTCTCTGACA
* * *
66374353 AGACAGTGATTGCCAAATCATCTT-GATCTGCTTCAGTGTAAACA-CTAAAGGTCAGATCTGCTA
1 ATACAGAGA-T-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTA
* * * *
66374416 TGTCTTCAATTTGCTTCACTT-TAAACA-ACAGAATGCCAAATCATCTTTTGATCTGCTTTGATG
64 TGTCTTCGATTTTCTT---TTGTAAACACA-AGAATGCCAAATCATC-TTCGATCTGCTTCGATG
* * *
66374479 T-AAAA-ATCTAAAGGTCAGATCTGCTATGTCTTTC-ATCCTCCT-TCCATCGAATATGGAGA-G
124 TGAAAACATCCAAAGGTCAGATCTGCTATGTC-TTCGAT-CTGCTCTCCGTCGAATATGGAGATG
*
66374539 -C-AATCTATTTCTTCGATTTGTTCTCTGACA
187 CCAAATCTGTTTCTTCGATTTGTTCTCTGACA
* * *
66374569 ATAACAG-GATGGCAAATCATCTTGGAATCTACTTTAGTGTAAACACCTGGAAGGTCAGAT-TGC
1 AT-ACAGAGAT-CCAAATCATCTTGG-ATCTGCTTCAGTGTAAACACCT-GAAGGTCAGATCTGC
* ** * * *
66374632 TAT-TCTTCGATTTGCCCTTGTAAACACAAGAATGCGAAAATCATCTTAGA-ATGCTTCGATGTG
62 TATGTCTTCGATTTTCTTTTGTAAACACAAGAATGC-CAAATCATCTTCGATCTGCTTCGATGTG
* * *
66374695 AAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTTGAACTAT-GAGATG-CA
126 AAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA-TATGGAGATGCCA
66374758 AAT
190 AAT
66374761 AATCATTGGA
Statistics
Matches: 4298, Mismatches: 547, Indels: 865
0.75 0.10 0.15
Matches are distributed among these distances:
205 10 0.00
206 19 0.00
207 21 0.00
208 30 0.01
209 29 0.01
210 51 0.01
211 53 0.01
212 91 0.02
213 88 0.02
214 141 0.03
215 213 0.05
216 204 0.05
217 269 0.06
218 279 0.06
219 273 0.06
220 375 0.09
221 365 0.08
222 450 0.10
223 220 0.05
224 177 0.04
225 168 0.04
226 88 0.02
227 40 0.01
228 42 0.01
229 45 0.01
230 87 0.02
231 84 0.02
232 107 0.02
233 39 0.01
234 70 0.02
235 48 0.01
236 50 0.01
237 47 0.01
238 16 0.00
239 9 0.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (218 bp):
ATACAGAGATCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
TCTTCGATTTTCTTTTGTAAACACAAGAATGCCAAATCATCTTCGATCTGCTTCGATGTGAAAAC
ATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTG
TTTCTTCGATTTGTTCTCTGACA
Found at i:66373830 original size:450 final size:443
Alignment explanation
Indices: 66369267--66374760 Score: 2696
Period size: 440 Copynumber: 12.5 Consensus size: 443
66369257 CAAATAGTGC
* *
66369267 ATACAGAGATG-CCAAATCATCTTGGATCTGCTTTTAGTGTAAACACCTG-AGGTCAGAT-CTGC
1 ATACAGAGATGCCCAAATCATCTTGGATATGC--TTAGTGTAAACACCTGAAGGTCAGATATTGC
* * * *
66369329 TATGTCTTCATTTGCTCCTTGTAAGCACAAGAATTCTAAATCATCTTCGATTCAACGTTCGATG-
64 TATGTCTTCAATTGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTCGATTCAAC-TTCAATGT
* * *
66369393 TG---AAC---TCCAAAGGTCAGATCT-GTATGTCT-TCGATCTGCTCTC-CGTCGAATATGGAG
128 TGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTC-TTGAATATGGAG
66369449 A-GCCAAATCTGTTTCTTCGATT-TTGCTCTGACAATAGAGAGATGCCAAATCA-CTTGGATATG
192 ATGCCAAATCTGTTTCTTCGATTATT-CT-TGACAATAGAGAGATGCCAAATCATCTTGGATATG
* * *
66369511 CTTCAGTGTAAAACACCTGCAGGTCCAAATCT-CTATGTCTTCAATTTACTCCCTTGTAAACACA
255 CTTCAGTGT-AAACACCTGAAGGT-CAGATCTGCTATGTCTTCAATTTGCT-CCTTGT-AACACA
* * * *
66369575 A-GAAT-CTGAAATCATCTTCATCTACTTCGAAT-TGAAAACATCCAAAGGTCAGATCTGCTATG
316 AGGAATGC-CAAATCATCTTGATCTGCTTCG-ATGTGAAAACATCCAAA-GTTAGATCTGCTATG
* *
66369637 TCTTCGATCT-ATCTCCGTCG-AT-ATGGAAGA-T-CC-AA-CTGTTTCTTCGATTTGTTCTCTG
378 TCTTCGATCTGCTCTCCGTCGAATAATGG-AGATTGCCAAATCTATTTCTTCGATTTG-TCTCTG
66369695 A-A
441 ACA
* * * * *
66369697 ATAGA-AGATG-CCAAATCATC-TGGATATGCTTCAGTGTAAACACCTGCA-GTCAAATCTGGCT
1 ATACAGAGATGCCCAAATCATCTTGGATATGCTT-AGTGTAAACACCTGAAGGTCAGATATTGCT
* * * *
66369758 A-GTCTTCAATTTACTCCTTGTAAACACAAGAAT-TC-AATCATCTTCCGA-TCATACTTCGATG
65 ATGTCTTCAA-TTGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT-CGATTCA-ACTTCAATG
* * * * *
66369819 -TGAAAAACA--TCCAAAGGTCA-ATC-GCTA-GTCT-TCGATC-CCTCTC-CGTCG-ATAT-GA
127 TTGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTC-TTGAATATGGA
* * * *
66369873 GATGCCAAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCACATCATCTTGGAT-
191 GATGCC-AAATCTGTTTCTTCGA-TTATTCT-TGACAATAGAGAGATGCCAAATCATCTTGGATA
* * *
66369937 TGCTTC-GTGTAAACACCTGAAGGTCAGATCTGTTTTATGTCTTCGA-TTGCTCCTTGGGAACAC
253 TGCTTCAGTGTAAACACCTGAAGGTCAGATCTG--CTATGTCTTCAATTTGCTCCTT-GTAACAC
* *
66370000 TAA-GAATGCCAAATCAT-TTGATCTGCTTCCAATGTG--AACATCCAAAGGTTAGATCTAACTA
315 -AAGGAATGCCAAATCATCTTGATCTGCTT-CGATGTGAAAACATCCAAA-GTTAGATCT-GCTA
* * * *
66370061 TGTCTTCGATCTGCTCTCCCTTG-AT-ATGGAGATT----AATCT-GTT-TTCGATTTATTCTCT
376 TGTCTTCGATCTGCTCTCCGTCGAATAATGGAGATTGCCAAATCTATTTCTTCGATTT-GTCTCT
66370118 GACAA
440 GAC-A
* * * *
66370123 ATACAGAAAATG-CAAAATCATC-TGGATCTGCTTGAGTGTAAACACCTGGAAGGTTCAGAT-GT
1 ATACAG-AGATGCCCAAATCATCTTGGATATGCTT-AGTGTAAACACCT-GAAGG-TCAGATATT
* * * * ** * *
66370185 GC-ACTGCTCGTCAATTGCTCCTTGTAAACACAAGAATGCC-ATTCATCTT-GAATCTGCCTCGA
62 GCTA-TG-TCTTCAATTGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTCGATTCAACTTCAA
* * * *
66370247 TAGGTGA-AAA-A--ACC-AAGGTTAGATCTGCTATGTCT-TCGA---G----CTATTG-----G
125 T-GTTGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTCTTGAATATG
* * * * *
66370294 GAGATGACAAAATC-GTTTCTTCGATTTGGGTTTCTCTGACAAT-CAGAGATGGCAAATTATCTT
189 GAGATG-CCAAATCTGTTTCTTCGA-TT---ATTCT-TGACAATAGAGAGATGCCAAATCATCTT
* * * * * * *
66370357 GGATCTACCTTCA-TAGT-AACAACTTAAAGGTC-GATCTGCTATGCCTTCGA--TGCTTC-TGT
248 GGATAT-GCTTCAGT-GTAAAC-ACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGT
** * * * * * *
66370416 AAACACAA--TTTGCCAAAATCAT-TTGGGGATCTGCTTTGATGTGAAATCGTCCCAAGGTCAAA
310 -AACACAAGGAATGCC-AAATCATCTT---GATCTGCTTCGATGTGAAAACAT-CCAAAGTTAGA
* *
66370478 TCTGC-ATGTCTTCGATCTTCTCTCCAGTCGAAT-ATGTTTTTAGA-TGCC-AATCTATTTCTTC
369 TCTGCTATGTCTTCGATCTGCTCTCC-GTCGAATAATG----GAGATTGCCAAATCTATTTCTTC
*
66370539 GA-TTGTTTCTTGCACAA
429 GATTTGTCTC-TG-AC-A
* * *
66370556 ATACAAGAGATGCCCCAAAATCAGTCTTGGATCTACTTCCAGCAGT-AACACCGGTGAAGGTTCA
1 ATAC-AGAGATG-CCC-AAATCA-TCTTGGATATGCTT--AG-TGTAAACACC--TGAAGG-TCA
* * * ** * * *
66370620 GATCTGGCTATGTCTTCGATTGCTCCTTGTAAAAAC-AGAATGCGAAATC-TCTTTAGA-T-ATG
56 GATATTGCTATGTCTTCAATTGCTCCTTGTAAGCACAAGAATGCCAAATCATC-TTCGATTCA-A
* * * * *
66370681 CTTCGA--TTGA-AAA-A--TCCAAAGGTTTAGA-CTGCTACGTCT-TC-ATCTACTCTC-CGTC
119 CTTCAATGTTGATAAACATTTCCAAAGG-TTAGATCTACTATGTCTCTCGATCTGCTCTCTC-TT
* * *
66370736 GAATATGGAGATG-CAAATCTGTTTCTTTCGATTTGTTCTCTGACAATATAGAGAAT-TCAAATC
182 GAATATGGAGATGCCAAATCTGTTTC-TTCGA-TTATTCT-TGACAATAGAGAG-ATGCCAAATC
* * * * * *
66370799 ATCTTGGATCTG-TTCAGTG-AAACACCGGAAGGTCAAATTCTACCTATGTCTTCGATTTTCGT-
243 ATCTTGGATATGCTTCAGTGTAAACACCTGAAGGTCAGA-TCT-GCTATGTCTTCAATTTGC-TC
*
66370861 TTTGTAAACACGAA-GAATGCCAAATCATCTTGGGATCTGCATTCGATGTGCAAAACAT-CAAAG
305 CTTGT-AACAC-AAGGAATGCCAAATCATCTT--GATCTGC-TTCGATGTG-AAAACATCCAAA-
* * * *
66370924 GTGAGATCTGCTATGTCTTCGATC-GCTCTCCGTC-AAT--CGGAGA-TGCCAAATTTTGTTTCT
363 GTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATAATGGAGATTGCCAAA-TCTATTTCT
* **
66370984 TCAATCCGCTCTCTGACA
427 TCGATTTG-TCTCTGACA
* * * *
66371002 ATACAGAGATG--CAAATTCA-CTTGGCTCCCA-ACTTTAG-GTAAACA-CTAAAGGTCAGAT-C
1 ATACAGAGATGCCCAAA-TCATCTTGGAT---ATGC-TTAGTGTAAACACCTGAAGGTCAGATAT
* * * * * **
66371060 TGCCTATGT-TTCGATTGCTCCTTTGTAAACACAATTTAATGCCAAATAATCTTC-TTTCTGC-T
61 TG-CTATGTCTTCAATTGCTCC-TTGTAAGCACAA--GAATGCCAAATCATCTTCGATTCAACTT
* * * * * *
66371122 C--TGTGTGAAAAACA--ACCAAAGGTCAGATCTTGCTATGTCT-T-TATACTGCTCTC-CGTGC
122 CAATGT-TGATAAACATTTCCAAAGGTTAGATC-TACTATGTCTCTCGAT-CTGCTCTCTC-T-T
* * ** * *
66371180 GAATTTGGGGGATGGAAAATCTGTTTCTTCGATT-TGGTCTCCTGACAATACAGAGATACCAAAT
182 GAATAT-GGAGATGCCAAATCTGTTTCTTCGATTAT--TCT--TGACAATAGAGAGATGCCAAAT
* * * * * * * *
66371244 CA-CTTGGATCTACTTCAGAGTAAACAACTAAAGGTCAGAATCTGCTATGTCTTCGATTTACTTC
242 CATCTTGGATATGCTTCAGTGTAAACACCTGAAGGTCAG-ATCTGCTATGTCTTCAATTTGCTCC
* * * * *
66371308 TTGTAAACACAA-TAATGCCAAATCATTTTGA-CTGCTTCGATGTCG-AATCATCCAATGGGTCA
306 TTGT-AACACAAGGAATGCCAAATCATCTTGATCTGCTTCGATGT-GAAAACATCCAA--AGTTA
* * * * * * *
66371370 GATTCTACT-TGTCTT-TATCTTCTCTTCCATTCAAAT-ATGCAGA-TGCC-AATCT-GTTCGTT
367 GA-TCTGCTATGTCTTCGATCTGCTC-TCC-GTCGAATAATGGAGATTGCCAAATCTATTTC-TT
66371429 CGATTTGTTCTCTTGAACA
428 CGATTTG-TCTC-TG-ACA
* * * *
66371448 ATACAGTGATG-CCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAA-GTTAGAT-CTGCT
1 ATACAGAGATGCCCAAATCATCTTGGATATGCTT-AGTGTAAACACCTGAAGGTCAGATATTGCT
* ** * * * * *
66371510 ATTTCTTCAATTTAATCC-TGTAAAC-CAAGAATTCTAAATCATCTTGGATGT--ACTTCGATG-
65 ATGTCTTCAA-TTGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTCGAT-TCAACTTCAATGT
* * **
66371570 TG--AAACA--TCCAAAGGGTCAGATCTGCTATGTAACTCGAATCTTGCTCTC-CTATCGAATAT
128 TGATAAACATTTCCAAA-GGTTAGATCTACTATGTCTCTCG-ATC-TGCTCTCTCT-T-GAATAT
* * *
66371630 GGAGATGCC-AATCTGTTTCTTCGATTTGTTTCTCTGACAATACAGAGATTGCCAAA-CATATTG
188 GGAGATGCCAAATCTGTTTCTTCGA-TT-ATTCT-TGACAATAGAGAGA-TGCCAAATCATCTTG
* * * *
66371693 GATTTTTCTTCAGTTGT-AACACCT-AAGGTCAGATCTGTTATGTCTTCGGATTTGCTCCTCCCC
249 GA-TATGCTTCAG-TGTAAACACCTGAAGGTCAGATCTGCTATGTCTTC-AATTTG--------C
* *
66371756 TTCCATTGTGAACA-ACA-GAATGCGAAATCATCTTGATCTCCTTCGATGTGAAAACATCCAAAG
303 -TCC-TTGT-AACACA-AGGAATGCCAAATCATCTTGATCTGCTTCGATGTGAAAACATCCAAA-
* * * * *
66371819 GGGTTAGATCTACTATGTCTTC-ATCTGCTCGTCCCTTGAAT-ATGGAGATGTGAC-AATCTGTT
363 --GTTAGATCTGCTATGTCTTCGATCTGCTC-TCCGTCGAATAATGGAGAT-TGCCAAATCTATT
*
66371881 TCTTC-ATTTGTTTTCTGACA
424 TCTTCGATTTG-TCTCTGACA
* * * *
66371901 ATACA-AGATGCCAAAATCATCTTGGATCTG-TT-GTCGTAAAACACCTGCAGGTCCAG--A-CG
1 ATACAGAGATGCCCAAATCATCTTGGATATGCTTAGT-GT-AAACACCTGAAGGT-CAGATATTG
* * * *
66371960 CTCATGTCTTCCATTTGCTCCTTGGT-AGCACCAAGAATTCTAAATCATC-TCGA-TCAACTTCG
63 CT-ATGTCTT-CAATTGCTCCTT-GTAAGCA-CAAGAATGCCAAATCATCTTCGATTCAACTTCA
* * * *
66372022 ATG-TGA-AAACA--T-CAAAGGTCAG-TCT-GTATGTCT-TCGATCTACTCTC-CGTCGAATAT
124 ATGTTGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTC-TTGAATAT
* * *
66372078 GGAGATGCCAAATCTGGTTCTTCGAATTTGTTCTCTAACAATAGAGAGATGCCAAATTCAT-TCT
188 GGAGATGCCAAATCTGTTTCTTCG-A-TTATTCT-TGACAATAGAGAGATGCCAAA-TCATCT-T
* **
66372142 GGATATGCTTCAGTGTAAACACCTGCAGGTCA-AGTCTGCTATGTCTTCAATTTAATCCTTGTAA
248 GGATATGCTTCAGTGTAAACACCTGAAGGTCAGA-TCTGCTATGTCTTCAATTTGCTCCTTGT-A
* * * *
66372206 ACACAA-GAATTCTAAATCATCTTCGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGC
311 ACACAAGGAATGCCAAATCATCTT-GATCTGCTTCGATGTGAAAACATCCAAA-GTTAGATCTGC
* * * * *
66372270 TATGTCTGCGATCTCCTCTCCGTCGGAAT-AGGGA-AATGCCAAATC-ATATTCTTCGATGTGTT
374 TATGTCTTCGATCTGCTCTCCGTC-GAATAATGGAGATTGCCAAATCTAT-TTCTTCGATTTG-T
66372332 CTCTGACA
436 CTCTGACA
* *
66372340 ATACAGAGATG-CC-AATCATTTCTTGGATTTGCTTCAGTGTAAACACCTGAAGGTCAGAT-CTG
1 ATACAGAGATGCCCAAATCA--TCTTGGATATGCTT-AGTGTAAACACCTGAAGGTCAGATATTG
* * ** * **
66372402 TTTATGTC-TCGATT--TGCCTTGTGAA-CAC-AGAGGGCCAAATCATCTTGGA-TCTGCTTTCA
63 -CTATGTCTTCAATTGCT-CCTTGT-AAGCACAAGAATGCCAAATCATCTTCGATTCAAC-TTC-
66372461 AATG-TGA-AAACA--TCCAAA-GTTAGATTCTTACTATGTCT-TCGATCTGCTCTC-CTTGAA-
123 AATGTTGATAAACATTTCCAAAGGTTAGA-TC-TACTATGTCTCTCGATCTGCTCTCTCTTGAAT
* ** *
66372518 ATGGAGATGGCTGATCTGTTTTCTTCGATTTATTCTCGACAATCA-AGA-ATGCC-AATCATTCT
186 ATGGAGATGCCAAATCTG-TTTCTTCGA-TTATTCTTGACAAT-AGAGAGATGCCAAATCA-TCT
* * *
66372580 TGGATCTGCTTTAGTGTAAAAACACTGAAGGTCAGATCTGCTATGTTCTTCAATTTGCTCCTTGT
247 TGGATATGCTTCAGTGTAAACAC-CTGAAGGTCAGATCTGCTATG-TCTTCAATTTGCTCCTTGT
* *
66372645 AAACACAA-GAATGCC-AATCATCTTAAAATCT-CTTCGATGTGAAAAACATCCAAAGGTAGATC
310 -AACACAAGGAATGCCAAATCATCTT--GATCTGCTTCGATGTG-AAAACATCCAAAGTTAGATC
* * * *
66372707 -GCTATGTGCATTC-ATCTGCTCTCCGTTCG-AT-ATGGGGATTGACAAATTTTGCTTTCTTCGA
371 TGCTATGT-C-TTCGATCTGCTCTCCG-TCGAATAATGGAGATTGCCAAA-TCT-ATTTCTTCGA
66372768 TTTGTTCTGCTGACA
431 TTTG-TCT-CTGACA
* * * * * * *
66372783 ATACAGAGATG-CCAAATAAACTTGGATCTACTTCAGAAGTAAACAACTAAAGGTCATATCAGCT
1 ATACAGAGATGCCCAAATCATCTTGGATATGCTT-AG-TGTAAACACCTGAAGG-----TCAG--
* ** * * * *
66372847 ATTTTTTTTTGTTTTTCTTTTTCGATTTGCGT-C-TGTAA-CACAATAATGCCAAATCAT-TTTG
57 ATATTGCTATG----TC---TTC-AATTGC-TCCTTGTAAGCACAAGAATGCCAAATCATCTTCG
* * * * * * * * * * *
66372908 ATT--GCTTTAATG-T--TAATC--GTCCCATGGTCAAGATCTGCTATGT-TTTCAATCCTTCTC
113 ATTCAACTTCAATGTTGATAAACATTTCCAAAGGT-TAGATCTACTATGTCTCTCGAT-CTGCTC
* * *
66372965 TCCCTCTT-AATATGCAGATACCAAATCTGTTTTCTTTCGATTTATTCTTTGAC-A-AGCAGTGA
176 T--CTCTTGAATATGGAGATGCCAAATCTG-TTTC-TTCGA-TTATTC-TTGACAATAG-AGAGA
* *
66373027 TGCCAAATCATC-TGGATATGCTTCAGTGTAAACACCTAAAGGTTA-ATCTGCTATGTCTTCAAT
234 TGCCAAATCATCTTGGATATGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAA-
* *
66373090 TTTGCTCATTGTAAACACAA-GAATGCCAAATCCATCTTGATCTGCTTTGATGT-AAAACATCCA
298 TTTGCTCCTTGT-AACACAAGGAATGCCAAAT-CATCTTGATCTGCTTCGATGTGAAAACATCCA
* * * * ** *
66373153 CAGTTTAGATCTAC-ATGTCTTCGATCTGCTCTCCCTTGAAT-ATGGAGATTGTGAAATCTGTTT
361 AAG-TTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATAATGGAGATTGCCAAATCTATTT
*
66373216 CTTCGATTTGTTTCTGACA
425 CTTCGATTTGTCTCTGACA
66373235 ATACAGAGATGCCCAAAAATCATCTTGGATATGCTTAGTGTAAACACCTGAAGGTCAGATATTGC
1 ATACAGAGATGCCC--AAATCATCTTGGATATGCTTAGTGTAAACACCTGAAGGTCAGATATTGC
* * *
66373300 TATGTCTTCAATTGCTCCTTGTAAGCACAAGAATTCTAAATCATCTTCGATTCAACTTCGATGTT
64 TATGTCTTCAATTGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTCGATTCAACTTCAATGTT
*
66373365 GATAAACATTTCCAAAGGTTCAGATCCTGCTATGTC-CTTCGATC-GCTCTC-CGTTTCGGAATA
129 GATAAACATTTCCAAAGGTT-AGAT-CTACTATGTCTC-TCGATCTGCTCTCTC--TT--GAATA
*
66373427 TGGAGATGCCAAATCTGTTTCTTCGATTGTTCTTGACCAATAGAGAGATGCCAAATCATCTTGGA
187 TGGAGATGCCAAATCTGTTTCTTCGATTATTCTTGA-CAATAGAGAGATGCCAAATCATCTTGGA
* *
66373492 TATGCTTCAGTGTTAAACACCTGCAGGTCAGATCT-CTATGTCTTCCAATTTAAC-CCTTGTAAC
251 TATGCTTCAGTG-TAAACACCTGAAGGTCAGATCTGCTATGTCTT-CAATTT-GCTCCTTGTAAC
* * * * *
66373555 ACAAGCCGAATTCTAAATCATCTTCGATCTACTTCGATTTGAAAACATCCAAAGTCAGATCTGCT
313 ACAAG--GAATGCCAAATCATCTT-GATCTGCTTCGATGTGAAAACATCCAAAGTTAGATCTGCT
*
66373620 ATGTCTTCGATCTCCTCTCCGTCGAATAATGGACGA-TGCCAAATC-ATTTCTTCGA-TTGTCTC
375 ATGTCTTCGATCTGCTCTCCGTCGAATAATGGA-GATTGCCAAATCTATTTCTTCGATTTGTCTC
66373682 TGAC-
439 TGACA
* *
66373686 ATACAAGAGATTG-CC-AAT-ATCTTGGGATTTGCTTCAGTGTAAACACCTGAAGGTCA-ATCTT
1 ATAC-AGAGA-TGCCCAAATCATCTT-GGATATGCTT-AGTGTAAACACCTGAAGGTCAGATATT
* * * *
66373747 GTTATG-CTTCGATTTGCTCCTTAGTGAA-C-CAAGAATGCCAAATCA-CTTGGATCTTATATGC
62 GCTATGTCTTC-AATTGCTCCTT-GT-AAGCACAAGAATGCCAAATCATCTTCGAT-TCA-A--C
66373808 TTCAACTG-TGA-AAACA-TTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTCTTGA
120 TTCAA-TGTTGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTCTTGA
*
66373870 ATATGGAGAGTG--AAATCTGTTTGCTTCGATTATTCTCTGACAATACA-A-A-GCCCAAATCAT
184 ATATGGAGA-TGCCAAATCTGTTT-CTTCGATTATTCT-TGACAATAGAGAGATG-CCAAATCAT
* *
66373930 CTTGGATCTTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGC-ATGTC-TCAATTTGCTCCTTG
245 CTTGGAT-ATGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTG
* *
66373993 TAA-ATAGAAGAATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGACT
309 TAACACA-AGGAATGCCAAATCATCTTG-ATCTGCTTCGATGTGAAAACATCCAAA-GTTAGA-T
** * * * *
66374057 CTGCTAATGTCTTCGATCTGCTCTCCGTCGAAT-ATGG-GAGGGACAACTTTCGTTTCTTCGATT
370 CTGCT-ATGTCTTCGATCTGCTCTCCGTCGAATAATGGAGATTGCCAAATCT-ATTTCTTCGATT
66374120 TGTTCTCTGACA
433 TG-TCTCTGACA
* * * * * * *
66374132 AT-CAGAGATG-CCAAATACAACTTGGATCTACTTCAGAGT-AACAACTAAAGGTCAGAT-TCGA
1 ATACAGAGATGCCCAAAT-CATCTTGGATATGCTT-AGTGTAAACACCTGAAGGTCAGATAT--T
* * * * * **
66374193 GCTATTGTCTTCGAATTATGCTTC-TGTAA-AACAATAATGCC--ATCCATTTTGGA-TCTGCTT
62 GCTA-TGTCTTC-AA-T-TGCTCCTTGTAAGCACAAGAATGCCAAAT-CATCTTCGATTCAAC-T
* * * * * * * * * * *
66374253 TAAATGTT--TAAA-ATGTCCCATGG-CAGATCTGCTATGTTTC-CAATCTTCTCTCCCTCGAAT
121 TCAATGTTGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTCTTGAAT
* * * * *
66374313 ATGCAGATACCAAATCTGTTTTCTTCGATTATTCTTTGACAGACAGTGA-TTGCCAAATCATCTT
186 ATGGAGATGCCAAATCTG-TTTCTTCGATTATTC-TTGACA-ATAGAGAGATGCCAAATCATCTT
* *
66374377 -GATCTGCTTCAGTGTAAACA-CTAAAGGTCAGATCTGCTATGTCTTCAATTTGCTTCACTT-TA
248 GGATATGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGC-TC-CTTGTA
* * * *
66374439 A-ACAACAGAATGCCAAATCATCTTTTGATCTGCTTTGATGT-AAAA-ATCTAAAGGTCAGATCT
311 ACACAA-GGAATGCCAAATCATC--TTGATCTGCTTCGATGTGAAAACATCCAAA-GTTAGATCT
* *
66374501 GCTATGTCTTTC-ATCCTCCT-TCCATCGAAT-ATGGAGA--G-C-AATCTATTTCTTCGATTTG
372 GCTATGTC-TTCGAT-CTGCTCTCCGTCGAATAATGGAGATTGCCAAATCTATTTCTTCGATTTG
66374559 TTCTCTGACA
435 -TCTCTGACA
* * *
66374569 ATAACAG-GATG-GCAAATCATCTTGGAATCTACTTTAGTGTAAACACCTGGAAGGTCAG--ATT
1 AT-ACAGAGATGCCCAAATCATCTTGG-ATATGC-TTAGTGTAAACACCT-GAAGGTCAGATATT
* * * * * * *
66374630 GCTAT-TCTTCGATTTGC-CCTTGTAAACACAAGAATGCGAAAATCATCTTAGAAT--GCTTCGA
62 GCTATGTCTTC-AATTGCTCCTTGTAAGCACAAGAATGC-CAAATCATCTTCGATTCAACTTCAA
* * * *
66374691 TG-TGA-AAACA--TCCAAAGGTCAGATCTGCTACGTCT-TCGATCTACTCTC-CGTTGAACTAT
125 TGTTGATAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTC-TTGAA-TAT
66374750 -GAGATG-CAAAT
188 GGAGATGCCAAAT
66374761 AATCATTGGA
Statistics
Matches: 4070, Mismatches: 523, Indels: 939
0.74 0.09 0.17
Matches are distributed among these distances:
420 4 0.00
421 12 0.00
422 18 0.00
423 40 0.01
424 59 0.01
425 61 0.01
426 109 0.03
427 107 0.03
428 125 0.03
429 44 0.01
430 32 0.01
431 46 0.01
432 33 0.01
433 38 0.01
434 52 0.01
435 27 0.01
436 35 0.01
437 74 0.02
438 108 0.03
439 166 0.04
440 277 0.07
441 210 0.05
442 272 0.07
443 206 0.05
444 206 0.05
445 156 0.04
446 190 0.05
447 102 0.03
448 135 0.03
449 178 0.04
450 151 0.04
451 56 0.01
452 127 0.03
453 153 0.04
454 98 0.02
455 90 0.02
456 85 0.02
457 59 0.01
458 52 0.01
459 59 0.01
460 12 0.00
461 5 0.00
462 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (443 bp):
ATACAGAGATGCCCAAATCATCTTGGATATGCTTAGTGTAAACACCTGAAGGTCAGATATTGCTA
TGTCTTCAATTGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTCGATTCAACTTCAATGTTGA
TAAACATTTCCAAAGGTTAGATCTACTATGTCTCTCGATCTGCTCTCTCTTGAATATGGAGATGC
CAAATCTGTTTCTTCGATTATTCTTGACAATAGAGAGATGCCAAATCATCTTGGATATGCTTCAG
TGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAACACAAGGAATGCCA
AATCATCTTGATCTGCTTCGATGTGAAAACATCCAAAGTTAGATCTGCTATGTCTTCGATCTGCT
CTCCGTCGAATAATGGAGATTGCCAAATCTATTTCTTCGATTTGTCTCTGACA
Found at i:66375299 original size:216 final size:216
Alignment explanation
Indices: 66374761--66379282 Score: 1089
Period size: 219 Copynumber: 20.2 Consensus size: 216
66374751 AGATGCAAAT
* * *
66374761 AATCA-TTGGATCTGCTGTCGATGTGAAAAATCCAAAAGGTCAG-TCTGC-ATGTCTTCGATCTG
1 AATCATTTTGATCTGCT-TCGATGTG-AAACTCCCAAAGGTCAGATCTGCTATGTCTTCGATCTG
* * * * *
66374823 CTCTTCCACCGTCCAAATATGAGA-GCCAAAT-TGTTTCTTCCAATCCGCTCTCTGACAATACAG
64 CT-TTCCA---T-CGAATAT-AGATGCCAAATCTGTTTCTT-CGATTCGTTCCCTGACAATACAG
* *
66374886 AGATGCCAAATCATCTT-GCTCTACTTCAGTGTAAACACCTAAAGGTCAGATCTGCTACCGTCTT
122 AGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCGTCTT
66374950 CGATTTGCTCCTTGTAACACAAGAATGCCA
187 CGATTTGCTCCTTGTAACACAAGAATGCCA
* * * **
66374980 AATAATCTTT--TCTGCTTGGGATGGGAAAACAACCAACA-GTCA-ATC-GCTATGTCTTCCGAT
1 AATCAT-TTTGATCTGCTT-CGATGTG-AAACTCCCAA-AGGTCAGATCTGCTATGTCTT-CGAT
* * * * *
66375040 CTGCTCTCCGTCGAATATAGGGATGTTCAAATCTGTTTCTTCGATTGGTTCGCTGACAA-ACAGA
61 CTGCTTTCCATCGAATATA--GATG-CCAAATCTGTTTCTTCGATTCGTTCCCTGACAATACAGA
*
66375104 GATGCCAAATCA-CTTGGATCTACTTCAG-GTAAACAACTAAAGGTCA-ATCTGCTA-TGTCTT-
123 GATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCGTCTTC
* * *
66375164 GTTTTGCTTCTTGTTAAACACAATAATGCCCA
188 GATTTGCTCCTTG-T-AACACAAGAATG-CCA
* *
66375196 AATCATTTTGATCTGCTTCGATGTGAAATCGTCCCAATGGTCAGATCTGCTATGTCTTCGATCTT
1 AATCATTTTGATCTGCTTCGATGTGAAA-C-TCCCAAAGGTCAGATCTGCTATGTCTTCGATCTG
* *
66375261 CTTTCCATCGAATATCAGATGCCAAATCTGTTTCTTCGATTTGTTCCCTCGGACAATACAGTGAT
64 CTTTCCATCGAATAT-AGATGCCAAATCTGTTTCTTCGATTCGTTCCCT--GACAATACAGAGAT
* * * * * **
66375326 GCCAAAATCATCTTGGTATCTGCTTCAGTGT-AACACCTGAAGGTTAGATCTACTA-TTTCTTTC
126 GCC-AAATCATCTTGG-ATCTACTTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCGTC-TTC
* * *
66375389 AATTT-CTCCTTGTAAACACAAGAATTCTA
188 GATTTGCTCCTTGT-AACACAAGAATGCCA
* * *
66375418 AA-CATCTGGAT-TG-TACTCGATGTGAAACT-CC-AAGGTTCAGATCGTTTCTATCTGGT-TAT
1 AATCATTTTGATCTGCT--TCGATGTGAAACTCCCAAAGG-TCAGATC--TGCTA--T-GTCT-T
* * * * * * *
66375477 GCTATGTCTTCGATTGCTCCTGTCGAAATTATGGTGATGACAAATCTGTTTCTT-GATTTGTTCT
57 -CGA--TC-T-GCTT--TCC-ATCG-AA-TAT--AGATGCCAAATCTGTTTCTTCGATTCGTTCC
* * * * *
66375541 CTG-CAAT-CAGAGATTGCCAAATCATATTGGATTTGCTTCAGTGTAAACACCTGAAGGTCAGAT
110 CTGACAATACAGAGA-TGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGGTCAGA-
* * *
66375604 CTCTGTTA-TGTCTTCGATTTGCTCCTTGTGAACACAAGAATG-CG
173 -TCTGCTACCGTCTTCGATTTGCTCCTTGT-AACACAAGAATGCCA
* * * *
66375648 AATCATCTTGGATCTGC-TCGGATGTGAAAACAT-CCAAAGCTTAGATCTACTATGATCTTC-A-
1 AATCAT-TTTGATCTGCTTC-GATGTG-AAAC-TCCCAAAGGTCAGATCTGCTATG-TCTTCGAT
* * ** ** * **
66375709 CTGCTCTCCCT-GAATGGAGATGTGAAATCTGTTTCTCTCGATTTGTTTTCTG-CAACTACAGAG
61 CTGCTTTCCATCGAATATAGATGCCAAATCTGTTTCT-TCGATTCGTTCCCTGACAA-TACAGAG
* * * * *
66375772 ATTGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAACGGATCAGATCTGCCTACTAAG
124 A-TGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACT-AAAGG-TCAGATCTG-CTAC--CG
* ** * * *
66375837 TCGTATAATTGCTTCCTT-TAAGCACAAGAATTCTA
183 TCTTCGATTTGC-TCCTTGTAA-CACAAGAATGCCA
* **
66375872 AATTCATCTTCGAT-AAC-TCGATGTGAAAACAT-CCAAAGGTC-GATCTGCTATGTCTTCGATC
1 AA-TCAT-TTTGATCTGCTTCGATGTG-AAAC-TCCCAAAGGTCAGATCTGCTATGTCTTCGATC
* * * * * *
66375933 GGCTCTCCGTCGAATATGGAGTGCCAAATCTGTTTCTTCCGA-TCTGTTCTCTGACAATTAGAGA
62 TGCTTTCCATCGAATATAGA-TGCCAAATCTGTTTCTT-CGATTC-GTTCCCTGACAA-TACAGA
* * ** *
66375997 GATGCC-AATCATCTT-GATATATGCTTTCAGTGTAAACACCTGCCAGGTCAG-TC-GCTA-TGT
123 GATGCCAAATCATCTTGGATCTA--C-TTCAGTGTAAACAACT-AAAGGTCAGATCTGCTACCGT
* * * *
66376057 CTTCCAATTTACTCC-TGATAAACAACAAGAAT-TCT
184 CTT-CGATTTGCTCCTTG-T-AAC-ACAAGAATGCCA
* *
66376092 AATCATCTTCGGATCTACTTTCGATGTGAAA-TCATCCAAAGGTC-GATCTGCTATGT-TCTCGA
1 AATCAT-TT-TGATCTGC-TTCGATGTGAAACTC--CCAAAGGTCAGATCTGCTATGTCT-TCGA
* * * ** *
66376154 T-TCCTCTCC-GCGAATATGGGAGATGCCAAATC-GTTTCTTCGATTTATTCTCTGACAATACAG
60 TCTGCTTTCCATCGAATAT---AGATGCCAAATCTGTTTCTTCGATTCGTTCCCTGACAATACAG
* * * * * *
66376216 AGATGCCAAAATCATCTTGGAATCTGCTTTAGTGTAAAACCACCTGAAGGTCAGAATCTACTA-T
122 AGATGCC-AAATCATCTTGG-ATCTACTTCAGTGT-AAA-CAACTAAAGGTCAG-ATCTGCTACC
* * *
66376280 GTCTTCAATTTGCTCCTTGTAAACACAAGATTACCA
182 GTCTTCGATTTGCTCCTTGT-AACACAAGAATGCCA
* * *
66376316 AATCATCTTGAATCTGCTTCGATGTGCAAAACAT-CCAAAGGTTAGATCTGCTACGTCTTTCGCA
1 AATCATTTTG-ATCTGCTTCGATGTG--AAAC-TCCCAAAGGTCAGATCTGCTATGTC-TTCG-A
* ** * * *
66376380 TCTGCTCTTCCA-CGAATATGGGGATGAAAAAATTTGTTTCTTCGATTTG-TCTCTGACAATA-A
60 TCTGCT-TTCCATCGAATAT--AGATG-CCAAATCTGTTTCTTCGATTCGTTCCCTGACAATACA
* * * * *
66376442 GAGATGCCAAATCAACTTGGAT-TACTTCAGAGTAAACAACTAAAGTTCAAATC--CTA-TGTCT
121 GAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCGTC-
* * *
66376503 TTCAAGTTGCTCATTGTAAACACGAAGAAGCTGCCA
185 TTCGATTTGCTCCTTGT-AACAC-AAGAA--TGCCA
* *
66376539 AATCATGCTTTGAATCTGCTTTGATGTAAAACAT-CCAAAGGTCAGATCTGCTAT-TCTTCAGAT
1 AATCAT--TTTG-ATCTGCTTCGATGTGAAAC-TCCCAAAGGTCAGATCTGCTATGTCTTC-GAT
* * * * * * *
66376602 CTGCCTCGATCCTGTCGAATATGTGGGATGGCAAAATATGTTTC-TCGATTTGTTCTCTGACCAA
61 CTG-CT--TTCC-ATCGAATA--T-AGAT-GCCAAATCTGTTTCTTCGATTCGTTCCCTGA-CAA
*
66376666 TACAGACGATGCC-AATCATCTTGGATCTACTCTCA-TCGTAAACAACTTCAAGGTGCCAGATCT
117 TACAGA-GATGCCAAATCATCTTGGATCTACT-TCAGT-GTAAACAAC-TAAAGGT--CAGATCT
* *
66376729 GCTTA-TGTATTCGA-TTGCTTCCTT-TAAACACAA-AA-GCCA
176 GC-TACCGTCTTCGATTTGC-TCCTTGT-AACACAAGAATGCCA
* * *
66376768 AATCATTTTGGATC-GCTCTTGATGTAAAAAC-CGATCAAAGGTCA-ATCGTGCTATGTCTTCGA
1 AATCATTTT-GATCTGCT-TCGATGT-GAAACTC--CCAAAGGTCAGATC-TGCTATGTCTTCGA
* *
66376830 TCT-CTCTTCCCGTCAAATATGGAGA-GCCAAATCTG-TTCTTTC-A-TCTGTT--CTGACAATA
60 TCTGCT-TT-CCATCGAATAT--AGATGCCAAATCTGTTTC-TTCGATTC-GTTCCCTGACAATA
* * *
66376888 -AGAGATGCCCAAATCATC-TGGATCTGATTCGCGTTCAGTTTTAAACACCTGAA-GT--GA-CT
119 CAGAGATG-CCAAATCATCTTGGATCT-A----C-TTCAG-TGTAAACAACTAAAGGTCAGATCT
* *
66376947 GAATTA--TTCTTC-ATTTGCTCC-TGTTAAACACAAGAATGGCCA
176 G--CTACCGTCTTCGATTTGCTCCTTG-T-AACACAAGAAT-GCCA
* * *
66376989 AATCATTCTTGAATAT-C-TCGATGTGAAAACATTCC-AAGCTCAGAACGCGTTACCAT-CTTAC
1 AATCATT-TTG-ATCTGCTTCGATGTG-AAAC-TCCCAAAGGTCAG-A-----T--C-TGC-TA-
* * * *
66377050 TG-CTTCGATCTGCTTCTACC-TTGATATTTGGAGGATGCTTAAATCTGTTCCTTGCTTCGATTT
51 TGTCTTCGATCTGCTT-T-CCATCGA-ATAT--A-GATGC-CAAATCTG-T--TT-CTTCGATTC
* * * *
66377113 GTTCTCTTACAATTACAGAAGATGCCAAAGTTCATCTT-GATCTGCTT-AGTTGTAAACACCCT-
105 GTTCCCTGACAA-TACAG-AGATGCCAAA--TCATCTTGGATCTACTTCAG-TGTAAACA-ACTA
* * * *
66377175 AACGTCAGGATCTACTA-TGTCTCCTCGAATTTTCCGTCCTTGTAA-ACACAGAATGCCA
164 AAGGTCA-GATCTGCTACCGTCT--TCG-A-TTTGC-TCCTTGTAACACA-AGAATGCCA
* * * * * * *
66377233 AATCAGTCTTGGATCTGCTTATGATGTAAAAACATTTCCAAAGGTCATAT-TACTATGTCTTCCC
1 AATCA-T-TTTGATCTGCTT-CGATGT-GAAAC--TCCCAAAGGTCAGATCTGCTATGTCTT-CG
* *
66377297 ATCTGC-TTCCGTC-AGATATGGAGA-GCCCAAATCTGTTTCTTAC-ATT-GTTCTCTGA-AATA
59 ATCTGCTTTCCATCGA-ATAT--AGATG-CCAAATCTGTTTCTT-CGATTCGTTCCCTGACAATA
* ** *
66377356 CAGCAGATTCCAAATCATTCTTTTGG-TCGTGGTTCGTATTGTAAAACCAACT-AA-GTCAAGAT
119 CAG-AGATGCCAAATCA-TC--TTGGATC-TACTTC--AGTGT-AAA-CAACTAAAGGTC-AGAT
* *
66377418 CTGCTA-TGTCTCTTCGATTTGCTGCTTGTAACACACAGAATGCCA
174 CTGCTACCG--TCTTCGATTTGCTCCTTGTAACACA-AGAATGCCA
*
66377463 AATCATTTGTGAATCTGCTTGGAT-TGAGAA--CCCAAA-GTCAGA-CTGCTATGTC-TCGATTC
1 AATCATTT-TG-ATCTGCTTCGATGTGA-AACTCCCAAAGGTCAGATCTGCTATGTCTTCGA-TC
* * * * * * *
66377522 TTCCTTCCGTATCGAATTATGACATGCCAAATCT-TTGCCTT-TATTTGTGTCTCTGACAATAC-
62 TGCTTTCC--ATCGAA-TAT-AGATGCCAAATCTGTT-TCTTCGATTCGT-TCCCTGACAATACA
* * * **
66377584 GAGATG-CAACTCATCTTGGAATTCTACTTTCAGTGTAAACACCTGAA-G-CAGATCTGCTA-TA
121 GAGATGCCAAATCATCTTGG-A-TCTAC-TTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCG
66377645 TCTTCGATTTGCTTCCTTGTAAACCACAGAGAATGCCCA
183 TCTTCGATTTGC-TCCTTGT-AA-CACA-AGAATG-CCA
* * *** *
66377684 AATCA-CTTGAAATCTAC-TCGATG-GAAACAGTCAAAGGTTAGATCTGCTATGTCTTC-ATCTG
1 AATCATTTTG--ATCTGCTTCGATGTGAAACTCCCAAAGGTCAGATCTGCTATGTCTTCGATCTG
* * * * *
66377745 CTCTCGCATTGAATATGGGATGAACCAAAT-TGTTTCTT-GATTTG-TCTCTGACCAATACAATC
64 CTTTC-CATCGAATAT-AGATG--CCAAATCTGTTTCTTCGATTCGTTCCCTGA-CAATAC-A--
* * * * *** *
66377807 GCAATTTTCGATTGCCCTTGGAAAT-A-CATGGACTCTA-TCTGATTGCTTTAGTGA-TAACA-C
121 G--A-----GA-TG-CC----AAATCATCTTGGA-TCTACT-TCAGTG--TAAACAACTAA-AGG
* * * *
66377867 TAAAGGATCAGATCGCTA-TG-CTTC-ATTT-TTCCTTGTAAACACAATAATGCCA
168 T-CA-GATC---T-GCTACCGTCTTCGATTTGCTCCTTGT-AACACAAGAATGCCA
* *
66377919 AATCATCTTGGATCTGCTT-GATGTGAAAATCTCCAAAGGT-A-ATCTGCGTAT-TCTTCGAATC
1 AATCAT-TTTGATCTGCTTCGATGTGAAACTC-CCAAAGGTCAGATCTGC-TATGTCTTCG-ATC
* * * * *
66377980 TGCTCTCCAGTCGAATATGGGA-G-C-AATCTGATTGCATAAT-G-TTCGTGTTCGT-ACAATAC
62 TGCTTTCCA-TCGAATAT-AGATGCCAAATCTG-TTTC-T--TCGATTCGT-TCCCTGACAATAC
66378039 AGA-ACGTG-CAAATCATCTTGCGAT-TACCAATTCAG-GTAAAC--CTGAAAGGTCAGATCTGC
120 AGAGA--TGCCAAATCATCTTG-GATCTA-C--TTCAGTGTAAACAACT-AAAGGTCAGATCTGC
** *
66378098 TAGTGTCTTCGATTTGCTTTCTTGTAACACAAGGAATGCCA
178 TACCGTCTTCGATTTGC-TCCTTGTAACACAA-GAATGCCA
* *
66378139 AATCATCTATGATCTGCTTCGATGTGAAA-TCGTCACAA-GTCAGATCTGCTATGTC-TCGATTA
1 AATCAT-TTTGATCTGCTTCGATGTGAAACTC-CCA-AAGGTCAGATCTGCTATGTCTTCGA-T-
* * * * * *
66378201 CT-CTTT-CGTCAAATATAGAGTTGCCAAAT-TGTTT-TTTGATTTGTTTTCCATGATAA-A-A-
61 CTGCTTTCCATCGAATATAGA--TGCCAAATCTGTTTCTTCGATTCG--TTCCCTGACAATACAG
* * *
66378259 AGAT-CCAAATCATCTT-GATCT-CTTCAG-GT-AA-AACTGAAGGTCAAATCTG-TA-TGTTCT
122 AGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCG-TCT
*
66378316 TCAATTTGCTCCTTTGTAACACAAGAAT--CA
186 TCGATTTGCTCC-TTGTAACACAAGAATGCCA
* *
66378346 AATCATTTTGGATCTGCTTCGATGTGAAACAGT-CC--AGTCTCAGATCTGCTA-CT-TTCTGAT
1 AATCATTTT-GATCTGCTTCGATGTGAAAC--TCCCAAAG-GTCAGATCTGCTATGTCTTC-GAT
* * **
66378406 GCT-CTCTCCTGTCGAAT-TCATGATGCCAAA-CT-TTTC-T-GATT-G-TCTTTGACAATAGCA
61 -CTGCTTTCC-ATCGAATAT-A-GATGCCAAATCTGTTTCTTCGATTCGTTCCCTGACAATA-CA
* * *
66378463 GAGA---CAAATCATCTTGGATCGTGC-TCAG-GTGAAACACCTGGAAGGTCAAGATCTGC-ACT
121 GAGATGCCAAATCATCTTGGATC-TACTTCAGTGT-AAACAACT-AAAGGTC-AGATCTGCTAC-
*
66378522 ATGTCTTCGATTTGCTCCTTGTCAACACAAGAATGCCA
181 -CGTCTTCGATTTGCTCCTTGT-AACACAAGAATGCCA
* *
66378560 AATCATTTTGATCTGCTTCGATGTGAAAACTTCCAGTCCAAAGGTCAGATCTTCTA-CTCTTCGA
1 AATCATTTTGATCTGCTTCGATGTG-AAAC-T-C---CCAAAGGTCAGATCTGCTATGTCTTCGA
* * * * * * *
66378624 TACT-CTCGTCCGTCTAATATGAGATTCCAAAATCTGTTTTTTCGATTTGTT-TCTGACAATACA
60 T-CTGCT-TTCCATCGAATAT-AGATGCC-AAATCTGTTTCTTCGATTCGTTCCCTGACAATACA
* * *
66378687 GA-ACTG-CAAATCAT-TTGGATCTGC-TCAGATGTGAAGACATCCTGAAGGTCA-ATCT-CT-C
121 GAGA-TGCCAAATCATCTTGGATCTACTTCAG-TGT-AA-ACA-ACTAAAGGTCAGATCTGCTAC
** * *
66378745 ATATCTT-GATTTACTCCGTG-AACACAAGAATGCCA
181 -CGTCTTCGATTTGCTCCTTGTAACACAAGAATGCCA
* *
66378780 AATCATCTTGATTCCTGCTTCTATGTGAAACGAT-CCAAAGGTCAGATCTGGTTTTCTATGTCTA
1 AATCATTTTGA-T-CTGCTTCGATGTGAAAC--TCCCAAAGGTCAGATCT-G----CTATGTCT-
* * * * * * *
66378844 TCAATCTACTCTCCGTCAGAATATGGAGATGCCAAAATTTG-TTCTT-GCACTACGTTCTCTGGA
56 TCGATCTGCTTTCCATC-GAATAT--AGATGCC-AAATCTGTTTCTTCG-A-TTCGTTCCCT-GA
** *
66378907 CAATACAGCGAGATGCCAAATCATCTTGCCTGT-CATTCAGTGTAAACAA-TAAAAGGTC--A-C
114 CAATACA--GAGATGCCAAATCATCTTGGATCTAC-TTCAGTGTAAACAACT-AAAGGTCAGATC
* *
66378967 TGCATA---TCTTCG-TTTG-TCTCGTGTAAACACAAGTATAGCCA
175 TGC-TACCGTCTTCGATTTGCTC-CTTGT-AACACAAGAAT-GCCA
* *
66379008 AATTAATTCTT--TCT-C-TCTGATGTGAAA-TCGTCCAACGGTCACGA-CTTGCTATGTC-TCG
1 AA-TCATT-TTGATCTGCTTC-GATGTGAAACTC--CCAAAGGTCA-GATC-TGCTATGTCTTCG
* * ** * *
66379066 ATCTG-TCT-CGTAAAATATGGAGATTCCAAATCTCTGTTTCTTTCAGA-TC-TGTCTCTGACAA
59 ATCTGCTTTCCATCGAATAT--AGATGCCAAA--TCTGTTTC-TTC-GATTCGT-TCCCTGACAA
* * * * * * *
66379127 GACAGAGATGCCAAAATCATCTGAGGAACTGACCTCAGTGTAAACACCTGAAGTTCAGATCTGCT
117 TACAGAGATGCC-AAATCATCT-TGGATCT-ACTTCAGTGTAAACAACTAAAGGTCAGATCTGCT
** * *
66379192 ATTTGTCTTCGTATTTGCTCCTTGTAACACGAGAGTATGTCA
179 A-CCGTCTTCG-ATTTGCTCCTTGTAACAC-A-AGAATGCCA
*
66379234 AATTCATCTTGGATCTTGCTTCGATTGTGAAAACAT-CCAAA-GTCAGATC
1 AA-TCAT-TTTGATC-TGCTTCGA-TGTG-AAAC-TCCCAAAGGTCAGATC
66379283 GGCTTTACGT
Statistics
Matches: 3359, Mismatches: 411, Indels: 1055
0.70 0.09 0.22
Matches are distributed among these distances:
201 7 0.00
202 1 0.00
203 11 0.00
204 6 0.00
205 15 0.00
206 16 0.00
207 53 0.02
208 11 0.00
209 17 0.01
210 32 0.01
211 18 0.01
212 34 0.01
213 30 0.01
214 23 0.01
215 65 0.02
216 90 0.03
217 132 0.04
218 139 0.04
219 260 0.08
220 228 0.07
221 205 0.06
222 185 0.06
223 255 0.08
224 168 0.05
225 206 0.06
226 144 0.04
227 93 0.03
228 119 0.04
229 132 0.04
230 109 0.03
231 72 0.02
232 59 0.02
233 45 0.01
234 55 0.02
235 57 0.02
236 52 0.02
237 62 0.02
238 22 0.01
239 15 0.00
240 19 0.01
241 14 0.00
242 12 0.00
243 11 0.00
244 17 0.01
245 15 0.00
246 6 0.00
247 11 0.00
248 5 0.00
249 6 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (216 bp):
AATCATTTTGATCTGCTTCGATGTGAAACTCCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCT
TTCCATCGAATATAGATGCCAAATCTGTTTCTTCGATTCGTTCCCTGACAATACAGAGATGCCAA
ATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGGTCAGATCTGCTACCGTCTTCGATTTGCT
CCTTGTAACACAAGAATGCCA
Found at i:66375940 original size:223 final size:214
Alignment explanation
Indices: 66374778--66376913 Score: 1124
Period size: 223 Copynumber: 9.6 Consensus size: 214
66374768 GGATCTGCTG
*
66374778 TCGATGTGAAAA-ATCCAAAAGGTC-AGTCTGC-ATGTCTTCGATCTGCTCTTCCACCGTCCAAA
1 TCGATGTGAAAACATCC-AAAGGTCGA-TCTGCTATGTCTTCGATC-GCTC-T-C-CC-T--GAA
* ** *
66374840 TAT-GAGA-GCCAAAT-TGTTTCTTCCAATCCGCTCTCTGACAATACAGAGATGCCAAATCATCT
57 TATGGAGATGCCAAATCTGTTTCTT-CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* * * * ** * *
66374902 T-GCTCTACTTCAGTGTAAACACCTAAAGGTCAGATCTGCTACCGTCTTCGATTTGCTCCTTGTA
121 TGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATAGTCTTCCAATTGCTCCTT-TA
* * * * *
66374966 ACACAAGAATGCCAAATAATCTT--TTCTGC
185 ACACAAGAAT-TCTAATCATCTTCGATCTAC
* * * * *
66374995 TTGGGATGGGAAAACAACCAACA-GTCAATC-GCTATGTCTTCCGATCTGCTCTCCGTCGAATAT
1 -T-CGATGTGAAAACATCCAA-AGGTCGATCTGCTATGTCTT-CGATC-GCTCTCCCT-GAATAT
* * *
66375058 AGG-GATGTTCAAATCTGTTTCTTCGATTGGTTCGCTGACAA-ACAGAGATGCCAAATCA-CTTG
60 -GGAGATG-CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
* * * * *** *
66375120 GATCTACTTCAG-GTAAACAACTAAAGGTCA-ATCTGCTAT-GTCTT-GTTTTGCTTCTTGTTAA
123 GATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATAGTCTTCCAATTGC-TCCT-TT-A
* * * * *
66375181 ACACAATAATGCCCAAATCAT-TTTGATCTGC
185 ACACAAGAAT--TCTAATCATCTTCGATCTAC
* * * * * *
66375212 TTCGATGTGAAATCGTCCCAATGGTCAGATCTGCTATGTCTTCGATCTTCTTTCCATCGAATAT-
1 -TCGATGTGAAAACAT-CCAAAGGTC-GATCTGCTATGTCTTCGATC-GCTCTCCCT-GAATATG
* * *
66375276 CAGATGCCAAATCTGTTTCTTCGATTTGTTCCCTCGGACAATACAGTGATGCCAAAATCATCTTG
61 GAGATGCCAAATCTGTTTCTTCGATTTGTT--CTCTGACAATACAGAGATGCC-AAATCATCTTG
* * * * * *
66375341 GTATCTGCTTCAGTGT-AACACCTGAAGGTTAGATCTACTAT-TTCTTTCAATTTCTCCTTGTAA
123 G-ATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATAGTCTTCCAATTGCTCCTT-T-A
* * *
66375404 ACACAAGAATTCTAAACATC-TGGATTGTAC
185 ACACAAGAATTCTAATCATCTTCGA-TCTAC
* *
66375434 TCGATGTG-AAAC-TCCAAGGTTCAGATCGTTTCTATCTGGTTATGCTATGTCTTCGATTGCTC-
1 TCGATGTGAAAACATCCAA-----AG---G--TCGATC------TGCTATGTCTTCGATCGCTCT
** * *
66375496 CTGTCGAAATTATGGTGATGACAAATCTGTTTCTT-GATTTGTTCTCTG-CAAT-CAGAGATTGC
50 CCCT-G-AA-TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA-TGC
* * * * * *
66375558 CAAATCATATTGGATTTGCTTCAGTGTAAACACCTGAAGGTCAGATCT-CTGTTATGTCTTCGAT
111 CAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCT-ATA-GTCTTCCAA
* * * *
66375622 TTGCTCCTTGTGAACACAAGAATGCGAATCATCTTGGATCTGC
174 TTGCTCCTT-T-AACACAAGAATTCTAATCATCTTCGATCTAC
* * *
66375665 TCGGATGTGAAAACATCCAAAGCTTAGATCTACTATGATCTTC-A-CTGCTCTCCCTG-A-ATGG
1 TC-GATGTGAAAACATCCAAAG-GTCGATCTGCTATG-TCTTCGATC-GCTCTCCCTGAATATGG
** *
66375726 AGATGTGAAATCTGTTTCTCTCGATTTGTTTTCTG-CAACTACAGAGATTGCCAAATCATCTTGG
62 AGATGCCAAATCTGTTTCT-TCGATTTGTTCTCTGACAA-TACAGAGA-TGCCAAATCATCTTGG
* **
66375790 ATCTGCTTTAGTGTAAACACCTGAACGGATCAGATCTGCCTACTAAGTCGTATAATTGCTTCCTT
124 ATCTGCTTTAGTGTAAACACCTGAA-GG-TCAGATCTG-CTA-T-AGTCTTCCAATTGC-TCCTT
*
66375855 TAAGCACAAGAATTCTAAATTCATCTTCGAT-AAC
183 TAA-CACAAGAATTCT-AA-TCATCTTCGATCTAC
*
66375889 TCGATGTGAAAACATCCAAAGGTCGATCTGCTATGTCTTCGATCGGCTCTCCGTCGAATATGGAG
1 TCGATGTGAAAACATCCAAAGGTCGATCTGCTATGTCTTCGATC-GCTCTCCCT-GAATATGGAG
* * *
66375954 -TGCCAAATCTGTTTCTTCCGATCTGTTCTCTGACAATTAGAGAGATGCC-AATCATCTTGATAT
64 ATGCCAAATCTGTTTCTT-CGATTTGTTCTCTGACAA-TACAGAGATGCCAAATCATCTTG-GAT
* * * *
66376017 ATGCTTTCAGTGTAAACACCTGCCAGGTCAG-TC-GCTAT-GTCTTCCAATTTACTCCTGATAAA
126 CTGCTTT-AGTGTAAACACCTG-AAGGTCAGATCTGCTATAGTCTTCCAA-TTGCTCCT--TTAA
66376079 CAACAAGAATTCTAATCATCTTCGGATCTAC
186 C-ACAAGAATTCTAATCATCTTC-GATCTAC
*
66376110 TTTCGATGTGAAATCATCCAAAGGTCGATCTGCTATGT-TCTCGATTC-CTCTCCGC-GAATATG
1 --TCGATGTGAAAACATCCAAAGGTCGATCTGCTATGTCT-TCGA-TCGCTCTCC-CTGAATAT-
*
66376172 GGAGATGCCAAATC-GTTTCTTCGATTTATTCTCTGACAATACAGAGATGCCAAAATCATCTTGG
60 GGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCC-AAATCATCTTGG
*
66376236 AATCTGCTTTAGTGTAAAACCACCTGAAGGTCAGAATCTACTAT-GTCTT-CAATTTGCTCCTTG
124 -ATCTGCTTTAGTGT-AAA-CACCTGAAGGTCAG-ATCTGCTATAGTCTTCCAA-TTGCTCCTT-
* *
66376299 TAAACACAAG-ATTACCAAATCATCTT-GAATCTGC
183 T-AACACAAGAATT--CTAATCATCTTCG-ATCTAC
* *
66376333 TTCGATGTGCAAAACATCCAAAGGTTAGATCTGCTACGTCTTTCGCATCTGCTCTTCCAC-GAAT
1 -TCGATGTG-AAAACATCCAAAGG-TCGATCTGCTATGTC-TTCG-ATC-GCTC-TCC-CTGAAT
* ** * *
66376397 ATGGGGATGAAAAAATTTGTTTCTTCGATTTG-TCTCTGACAATA-AGAGATGCCAAATCAACTT
58 ATGGAGATG-CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* * * * * * * * *
66376460 GGAT-TACTTCAGAGTAAACAACTAAAGTTCAAATC--CTAT-GTCTTTCAAGTTGCTCATTGTA
122 GGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATAGTCTTCCAA-TTGCTCCTT-T-
* * * *
66376521 AACACGAAGAAGCTGCCAAATCATGCTTTGAATCTGC
184 AACAC-AAGAA--T-TCTAATCAT-CTTCG-ATCTAC
* *
66376558 TTTGATGT-AAAACATCCAAAGGTCAGATCTGCTAT-TCTTCAGATCTGCCTCGATCCTGTCGAA
1 -TCGATGTGAAAACATCCAAAGGTC-GATCTGCTATGTCTTC-GATC-G-CTC--TCC-CT-GAA
* * *
66376621 TATGTGGGATGGCAAAATATGTTTC-TCGATTTGTTCTCTGACCAATACAGACGATGCC-AATCA
57 TATG-GAGAT-GCCAAATCTGTTTCTTCGATTTGTTCTCTGA-CAATACAGA-GATGCCAAATCA
* * * * * *
66376684 TCTTGGATCTACTCTCA-TCGTAAACAACTTCAAGGTGCCAGATCTGCT-TATGTATT-CGATTG
118 TCTTGGATCTGCT-TTAGT-GTAAAC-ACCTGAAGGT--CAGATCTGCTATA-GTCTTCCAATTG
** * * *
66376746 CTTCCTTTAAACACAA-AAGCCAAATCATTTTGGATCGCT-C
177 C-TCCTTT-AACACAAGAATTCTAATCATCTTCGAT--CTAC
* * * * *
66376786 TTGATGTAAAAACCGAT-CAAAGGTCAATCGTGCTATGTCTTCGATCTCTCTTCCCGTCAAATAT
1 TCGATGTGAAAA-C-ATCCAAAGGTCGATC-TGCTATGTCTTCGATCGCTC-TCCC-T-GAATAT
*
66376850 GGAGA-GCCAAATCTG-TTCTTTC-ATCTG-T-TCTGACAATA-AGAGATGCCCAAATCATC-TG
60 GGAGATGCCAAATCTGTTTC-TTCGATTTGTTCTCTGACAATACAGAGATG-CCAAATCATCTTG
66376908 GATCTG
123 GATCTG
66376914 ATTCGCGTTC
Statistics
Matches: 1559, Mismatches: 190, Indels: 337
0.75 0.09 0.16
Matches are distributed among these distances:
213 6 0.00
214 9 0.01
215 47 0.03
216 63 0.04
217 65 0.04
218 60 0.04
219 149 0.10
220 84 0.05
221 98 0.06
222 125 0.08
223 208 0.13
224 82 0.05
225 106 0.07
226 80 0.05
227 41 0.03
228 69 0.04
229 91 0.06
230 24 0.02
231 52 0.03
232 16 0.01
233 37 0.02
234 35 0.02
235 8 0.01
236 4 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (214 bp):
TCGATGTGAAAACATCCAAAGGTCGATCTGCTATGTCTTCGATCGCTCTCCCTGAATATGGAGAT
GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCT
TTAGTGTAAACACCTGAAGGTCAGATCTGCTATAGTCTTCCAATTGCTCCTTTAACACAAGAATT
CTAATCATCTTCGATCTAC
Found at i:66392812 original size:220 final size:220
Alignment explanation
Indices: 66390177--66395527 Score: 5519
Period size: 220 Copynumber: 24.3 Consensus size: 220
66390167 TGGAACACCT
* * *
66390177 AAGAATGCCAAATCAT-TTGGATCT-TTTCGA-GTGTAAAAC-TCCGAAAGAGACAGATCTACT-
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG-AAAACATCC-AAAG-GTCAGATCTGCTA
** * **
66390237 TG-CTTCGATCTGTTCT-CGTCGAATATGGAGATTGCCCAAAATCTG-TTCTTC-AATTCAT-TC
63 TGTCTTCGATCTACTCTCCGTCGAATATGGAGA-TG-CC-AAATCTGTTTCTTCGATTTGTTCTC
* * * * *
66390297 TGAC-ATCTCAGATATGCTAAAT-ATGTCT-AATC--CATTC-GTGTAAACAACCT--A-GTCAG
125 TGACAAT-ACAGAGATGCCAAATCATCT-TGGATCTGC-TTCAGTGTAAAC-ACCTGAAGGTCA-
*
66390353 GATCTGCTATTTCTTC-ATTTGCTCCATTGTAAACAC
185 GATCTGCTATGTCTTCGATTTGCTCC-TTGTAAACAC
* *
66390389 AAGAACTGTGCAAATCATCTTGCATCTGC-TCGATGTTG-AAACATCGCAAAGGTCAGATCTGCT
1 AAGAA-TG-CCAAATCATCTTGGATCTGCTTCGATG-TGAAAACATC-CAAAGGTCAGATCTGCT
* * *
66390452 ATGTCTT-GATCT-CTCTCCCTCGAATATGGCAGATGACCAACTCTGTTTCCTCGACTTTGTTCT
62 ATGTCTTCGATCTACTCTCCGTCGAATATGG-AGATG-CCAAATCTGTTTCTTCGA-TTTGTTCT
* * ** * * *
66390515 C-CACAATAC-GAGATCACCAAATACATCTTGGATTCTATATTCAGAGTAAATCA-AT--A-CT-
124 CTGACAATACAGAGAT-GCCAAAT-CATCTTGGA-TCT-GCTTCAGTGTAAA-CACCTGAAGGTC
* *
66390573 A-ATATGCTATGTCTTC-A-TTGCTTCTTGTAAACAC
184 AGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACAC
* * * *
66390607 AATAATGCCCAATTCAT-TTGGATCTGTAGCATT-GATTGTGAAAGTCGTCCACAAGGTCAGAT-
1 AAGAATG-CCAAATCATCTTGGATC--T-GC-TTCGA-TGTGAAA-ACATCCA-AAGGTCAGATC
* * *** * *
66390669 TGCTATGGGTCTTCGTTCTTCTCTTAATCGAA-ATTGGAG--CCCAAATCTGTTTCTT---TGTG
58 TGCTAT--GTCTTCGATCTACTCTCCGTCGAATA-TGGAGATGCCAAATCTGTTTCTTCGATTTG
* *
66390728 TCTCTCTGACAATAC-GAGATGACAAGATCATCTTGGATCTACTATCAGTGTAGAACATCCTG-A
120 T-TCTCTGACAATACAGAGATGCCAA-ATCATCTTGGATCTGCT-TCAGTGTA-AACA-CCTGAA
* *
66390791 GGT-AG-TCTAC-ATGTCTGT-GAGTTTGCTCGTCTTGTGAACAC
180 GGTCAGATCTGCTATGTCT-TCGA-TTTGCTC--CTTGTAAACAC
*
66390832 AAGAATTGCCAAATGCATCTTTGATCTGCTTGGCGTATGTTGAAATAACATCCAAAGGTCAGATC
1 AAGAA-TGCCAAAT-CATCTTGGATCTGCTT--CG-ATG-TG-AA-AACATCCAAAGGTCAGATC
* *
66390897 TGCTACGTCTTCGATCTACTCTCCATCGAATATGGAGATG-CAAATCTG-TTCTTCGATTTGTTC
58 TGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTC
* * *
66390960 ACTGGACAATTTATAGAGA--CACAAATCATTCTT-GTTC-GCTTCAG-GTAAACCACCTGAAGG
123 TCT-GACAA--TACAGAGATGC-CAAATCA-TCTTGGATCTGCTTCAGTGTAAA-CACCTGAAGG
* * * *
66391020 TTCAAAT-TACTA-GTCGTCGATTTACTTCC-TGATAAACAC
182 -TCAGATCTGCTATGTCTTCGATTTGC-TCCTTG-TAAACAC
**
66391059 AAGAATGCCCAAATCATCTCTATACTCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTA
1 AAGAATG-CCAAATCATCT-TGGA-TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTA
* * * * * *
66391124 T-ACATTCGGT-TCCTGGCTCC--C--ATGATAGAGATGCCAAATCTTTTTCTTTGACTTTGTTC
63 TGTC-TTCGATCTACT--CTCCGTCGAAT-ATGGAGATGCCAAATCTGTTTCTTCGA-TTTGTTC
* * *
66391183 TCTGACAATTACAGAGATGCCAAATCAT-TT-G-TTTGCTTTAGTTGTAAACAACCTAAAGGTCA
123 TCTGACAA-TACAGAGATGCCAAATCATCTTGGATCTGCTTCAG-TGTAAAC-ACCTGAAGGTCA
*
66391245 GATCTGC-ATGTCTGC-ATTTGCTCCTTGTATAAC-C
185 GATCTGCTATGTCTTCGATTTGCTCCTTGTA-AACAC
* * *
66391279 AAGAATGCCAAATCAT-TTGAATCTTGCTTCGATGT-AAAACATCCAAA-GTTAGATCTGGTATG
1 AAGAATGCCAAATCATCTTGGATC-TGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATG
* * * * *
66391341 TC-TCGATCTGCTCCCCGTCGAATATGGGGATG-CAAATCTGGTTC-TCCATTTGTTCTCTGACA
65 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
* *** * * ** *
66391403 ATACCAGAGATGTCAAATTCATCTTGGATCAAATTCAGAGAAAACAAATAAAGGTCAGATCTGCT
130 ATA-CAGAGATGCCAAA-TCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCT
* * * *
66391468 ATGTCTTCCAATTTTCTTCTAGTAAACAC
193 ATGTCTT-CGATTTGCTCCTTGTAAACAC
* * * *
66391497 -AGAAGTGCCAAATCATTTTGGGATCTGCTTCGATGTGAAATCGTTC-AAGGTCAGATCTGCTAT
1 AAGAA-TGCCAAATCATCTT-GGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTAT
* * *
66391560 GT-TTCGATCTTCTCTCC-ACAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTTCTCT-A
64 GTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTG-TTCTCTGA
* * *
66391622 CAGTA-AGAGAGGCCAAAATCA-CTCT-GATCCTACTTCAGTGT-AACACCTG-AGGTCAGATCT
128 CAATACAGAGATGCC-AAATCATCT-TGGAT-CTGCTTCAGTGTAAACACCTGAAGGTCAGATCT
66391682 GCTATGTCTTCG---T--TCCTTG-AAACAC
190 GCTATGTCTTCGATTTGCTCCTTGTAAACAC
*
66391707 AAGAATGCCCAAATTC-TCTTGGATCTACTTCGATGTGAAAACATCCAAACAGGTCAGATCTGCT
1 AAGAATG-CCAAA-TCATCTTGGATCTGCTTCGATGTGAAAACATCC-AA-AGGTCAGATCTGCT
* * ** **
66391771 A-GTCTTCCATCTGCACTCTCC-TC-AATATGGAGATACCAAATTCTG-TTCGTTAAATCCGCTT
62 ATGTCTTCGATCT--ACTCTCCGTCGAATATGGAGATGCCAAA-TCTGTTTC-TTCGATTTG-TT
* *
66391832 CTC-GACAATACA-AGATGCCAAATCATCTTGGCTCTGC-TCAGACG-AAACACCTGAAGGTCAG
122 CTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAG-TGTAAACACCTGAAGGTCAG
66391893 ATCTGCTATGTCTTCGATTTGCGT-CTTGTAAAACACC
186 ATCTGCTATGTCTTCGATTTGC-TCCTTGT-AAACA-C
* * * * * *
66391930 AAG-ATGCC-AATCATCTTGTATCTGCTTTGATGT-TAAACAAACCAAAAAGGCCAGAACCTGGC
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAAC-ATCC--AAAGGTCAG-ATCT-GC
* * * *
66391992 TAT-TCTACGATCTACCCTCCGTCGAA-AT-AAGCCATTGCCAAATCTGTTTCTTTGA-TT-TTC
61 TATGTCTTCGATCTACTCTCCGTCGAATATGGAG--A-TGCCAAATCTGTTTCTTCGATTTGTTC
* * * *
66392052 TCTAACAATACAGAGATGCCATATCATC-TGCGATC-ACTTTCAGTGTAAACACCTGAAGGGGCC
123 TCTGACAATACAGAGATGCCAAATCATCTTG-GATCTGC-TTCAGTGTAAACACCTGAA--GGTC
*
66392115 AGATCTGCTATATCTTCGATTTGCTCCTTGTAAACAC
184 AGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACAC
* * *
66392152 GAGAATGCCAAATCATCTTGAATC-GCTTC-ATTGTTGGAAAAACAT-CAAAGGTTAGATCTGCT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGA-TG-T-G-AAAACATCCAAAGGTCAGATCTGCT
* *
66392214 ATGTCTTCGATCTGCTCTCCGGTCGAATATGTG-GATGACAAA-CTG-TTCTTCGATTTGTTCTC
62 ATGTCTTCGATCTACTCTCC-GTCGAATATG-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTC
* * *
66392276 TGACAATACAGAGATGCCCAAAATCATCTTGGATCTACTTCATTAGT-AACAACT-AAGGTCAGA
125 TGACAATACAGAGATG-CC-AAATCATCTTGGATCTGCTTCAGT-GTAAACACCTGAAGGTCAGA
*
66392339 TCTGCTA-GTCTTCGATGTTGCTCTTTGTAAAAACAC
187 TCTGCTATGTCTTCGAT-TTGCTCCTTGT--AAACAC
* * * *
66392375 AATAATG-CAAATCAT-TTGGATCTGCTTTGATGTGAAATCGTCCAAA-GTCAGATCTGCTA-GT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * *
66392436 CTTC-ATCTTCTCTCCCTC-AATATGGAGATGCAAAATCTGTTTCTTCGATTTGTTGTCTGACCA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGA-CA
* *
66392499 AT--AGAGATGCCAAAATCA-CTTTGGATCTATTTTAGTTGTGTTTAGTGTAAACACCTGAAGGT
130 ATACAGAGATGCC-AAATCATC-TTGGATC---------TG-CTTCAGTGTAAACACCTGAAGGT
*
66392561 C-GAATCTGCTATGTCTTCGATTTCCTCCTTGTAAACAC
183 CAG-ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACAC
* * *
66392599 AAGAATGCCAAATCATCTTGGATATACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* *
66392664 CTTCGATCTACTCTCTGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCACTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
** * *
66392729 TACAGAGACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
* *
66392794 TCATCGATTTCCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * * *
66392819 AAGAACGCCAAATCATCTTGGATCTGCTTCAATGAGAAAACATCCAAAGGTCAGATATGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * ** ** *
66392884 CTTCCATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTAAATCCGCTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* *
66392949 TACAGAGATTCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
*
66393014 TCTTTGATTTGCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * * *
66393039 AAGAATGCCAAATCATCTTGTATCTGCTTTGATGTGAAAACAACCAAAGGTCAGACCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * * *
66393104 CTTCGATCTACCCTCCGTCGAATATAGACATGCCAAATCTGTTTCTTTGATTTGTTATCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* * * *
66393169 TACAGAGATGCCATATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATA
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
*
66393234 TCTTTGATTTGCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * *
66393259 GAGAATGCCAAATCATCTTGAATCTACTTCGATGTGAAAA-A-CCAAAGGT-AGAT-TGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * *
66393320 CTTCAATCTGCTCTCCGTCGAATATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTGACA
66 CTTCGATCTACTCTCCGTCGAATATG-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
* * *
66393384 ATACAGAGATGCCAAATCATCTTGGATCTACTTCA-TAGTAAACAACTAAAGGTCAGATCTGCTA
130 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGT-GTAAACACCTGAAGGTCAGATCTGCTA
* *
66393448 TGCCTTCGATTTGCTTCTTGTAAACAC
194 TGTCTTCGATTTGCTCCTTGTAAACAC
* * * * * *
66393475 AATAATGCCAAATCATTTTGGATCTGCTTTGATGTGAAATCGTCCAAAGGTCAAATCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * *
66393540 CTTCGATCTTCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* * *
66393605 TACAGAGATGGCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
66393670 TCTTCGATTTGCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* ** * * * *
66393695 AAGAATGCCAAATCATCATATATCTGCTTCGATGTGAAAACGTTCAAAGGTCAGATTTGCTACGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* **
66393760 CTTCGATCTACTCTTCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTTCCAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* ** * *
66393825 TACAGAAACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
*
66393890 TCTTCAATTTGCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * * * *
66393915 AAGAATGCAAAATCATTTTGGATCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATTT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * * * ** * *
66393980 CTGCGAACTTCTCTCCATTGAATATACAGATTCCAAATCTATTTCTTCGATTTGTTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
** * *
66394045 TACAGAGATGGAAAAATCATCTTGGATCTACTTCAGCGTAAACACCTGAAGGTCAGATCTGCTAT
131 TACAGAGAT-GCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTAT
66394110 GTCTTCGATTTGCTCCTTGTAAACAC
195 GTCTTCGATTTGCTCCTTGTAAACAC
* * *
66394136 AAGAATGCCAAATCATCCTAGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
*
66394201 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTTTTCGATTTGTTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
** * *
66394266 TACAGAGACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
* ** *
66394331 TCTTTGATTTTATCCTTGTGAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * * * *
66394356 AAGAATGCCAAATCATTTTAGATCTGCTTCGATGTGAAATCGTACAAAGGTCAGATCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* ****
66394421 CTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTC-ACTCCACTCTCTGACA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGA-TTTGTTCTCTGACA
* * *
66394485 ATACAGAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACAACTAAAGGTCAGATCTGCTAT
130 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTAT
* *
66394550 ATCTTCGATTTGCTCCTGGTAAACAC
195 GTCTTCGATTTGCTCCTTGTAAACAC
* * ** * * * *
66394576 AAGAATGCCAAATAATATTGTTTCTGCTTTGATATGAAAACAACCAACGGTCAGATCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
** ** * * ****
66394641 CTTCGATCTGGTCTCCGTAAAATATGGAGATGTCAAATCTGTTTCTTCAATCCCCTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* * * * *
66394706 GACAGAGATGCCAAATCATCTTGGAACTGCTTCAGAGTAAGCACCTGAAGGTCAGATCGGCTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
66394771 TCTTCGATTTGCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* ** *
66394796 AGGAATGGTAAATCATCTTGGATCTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * * *
66394861 TTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTTTTCTATGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* *
66394926 TAGAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
*
66394991 TCTTCAATTTGCTCCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * *
66395016 AAGAATGCCAAATCATCTTGGTTCCGCTTCGATGTGAAAACATCCAATGGTCAGATCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * *
66395081 TTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
*
66395146 TACAGAGATGCCAACTCATCTTGGATCTGCTTCAGTGTAAACACCTGAA-GTCCAGATCTGCTAT
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT-CAGATCTGCTAT
66395210 GTCTTCGATTTGCTCCTTGTAAACAC
195 GTCTTCGATTTGCTCCTTGTAAACAC
* * *
66395236 AAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
* * * ** * *
66395301 CTTCGATCTGCTCTGCATTAAATATGGAGATGCCAAATCTATTTTTTCGATTTGTTCTCTGACAA
66 CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
* * *
66395366 TACAGAGATGCCAAATCATCTTGGATCCGCTTTAGTGTAAACACCTGAAAGTCAGATCTGCTATG
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
* * *
66395431 TCTTTGATTTTCTGCTTGTAAACAC
196 TCTTCGATTTGCTCCTTGTAAACAC
* * * * *
66395456 AAGAATGCCAAATCATTTTGGATCTACTTCGATGTGAAATCGTCCACAGGTCAGATCTGCTATGT
1 AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
66395521 CTTCGAT
66 CTTCGAT
66395528 TTGCTCCTTG
Statistics
Matches: 4336, Mismatches: 551, Indels: 496
0.81 0.10 0.09
Matches are distributed among these distances:
210 30 0.01
211 16 0.00
212 12 0.00
213 59 0.01
214 58 0.01
215 168 0.04
216 265 0.06
217 121 0.03
218 105 0.02
219 122 0.03
220 2227 0.51
221 355 0.08
222 193 0.04
223 94 0.02
224 102 0.02
225 63 0.01
226 105 0.02
227 82 0.02
228 39 0.01
229 38 0.01
230 61 0.01
231 17 0.00
232 4 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (220 bp):
AAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGT
CTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAA
TACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
TCTTCGATTTGCTCCTTGTAAACAC
Found at i:66395093 original size:89 final size:86
Alignment explanation
Indices: 66394933--66395093 Score: 207
Period size: 89 Copynumber: 1.8 Consensus size: 86
66394923 CAATAGAGAG
* * *
66394933 ATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAA
1 ATGCCAAATCATCTTGGATCCGCTTGAGTGAAAACACC-GAAGGTCAGATCTGCTATGTCTTCAA
*
66394998 TTTGCTCCTTGTAAACACAAGA
65 TCTGCTCCTTGTAAACACAAGA
* *
66395020 ATGCCAAATCATCTTGGTTCCGCTTCGATGTGAAAACATCC-AATGGTCAGATCTGCTATGTTTT
1 ATGCCAAATCATCTTGGATCCGCTT-GA-GTGAAAACA-CCGAA-GGTCAGATCTGCTATGTCTT
*
66395084 CGATCTGCTC
62 CAATCTGCTC
66395094 TTCGTCGAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
87 23 0.37
88 3 0.05
89 35 0.56
90 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (86 bp):
ATGCCAAATCATCTTGGATCCGCTTGAGTGAAAACACCGAAGGTCAGATCTGCTATGTCTTCAAT
CTGCTCCTTGTAAACACAAGA
Found at i:66395529 original size:89 final size:89
Alignment explanation
Indices: 66395416--66395616 Score: 267
Period size: 89 Copynumber: 2.3 Consensus size: 89
66395406 ACACCTGAAA
* * * * * *
66395416 GTCAGATCTGCTATGTCTTTGATTTTCTGCTTGTAAACACAAGAATGCCAAATCATTTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGACCT
* ** *
66395481 ACTTCGATGTGAAATCGTCCACAG
66 ACTTCGATGTGAAAACAACCAAAG
*
66395505 GTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCTACCT
1 GTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGACCT
* *
66395570 GCTTTGATGTGAAAACAACCAAAG
66 ACTTCGATGTGAAAACAACCAAAG
* *
66395594 GTCAGACCTGTTATGTCTTCGAT
1 GTCAGATCTGCTATGTCTTCGAT
66395617 CTACCCTCCG
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
89 97 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (89 bp):
GTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGACCT
ACTTCGATGTGAAAACAACCAAAG
Found at i:66395537 original size:309 final size:310
Alignment explanation
Indices: 66395198--66395842 Score: 918
Period size: 309 Copynumber: 2.1 Consensus size: 310
66395188 ACCTGAAGTC
*
66395198 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTAC
1 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGACCTAC
* * * * * * *
66395263 TTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATCTGCTCTGCATTAAATATGG
66 TTCGATGTGAAAACAACCAAAGGTCAGACCTGCTACGTCTTCGATCTACCCTCCATCAAATATAG
*
66395328 AGATGCCAAATCTATTT-TTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
131 ACATGCCAAATCTATTTCTTT-GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
* * * * * * * *
66395392 CCGCTTTAGTGTAAACACCTGAAAGTCAGATCTGCTATGTCTTTGATTTTCTGCTTGTAAACACA
195 CCACTTCAGTGTAAACACCTGAAAGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAACACA
* * * * * *
66395457 AGAATGCCAAATCATTTTGGATCTACTTCGATGTGAAATCGTCCACA-GGT
260 AGAATGCCAAATCATCTTGAATCTACTTCGATGTGAAAACATCCAAATGAT
* *
66395507 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCTACCTGC
1 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGACCTAC
* * * * *
66395572 TTTGATGTGAAAACAACCAAAGGTCAGACCTGTTATGTCTTCGATCTACCCTCCGTCGAATATAG
66 TTCGATGTGAAAACAACCAAAGGTCAGACCTGCTACGTCTTCGATCTACCCTCCATCAAATATAG
* *
66395637 ACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCATATCATCTTGGATC
131 ACATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATC
* * *
66395702 TACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAACACGA
196 CACTTCAGTGTAAACACCTGAAAGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAACACAA
*
66395767 GAATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAATGAT
261 GAATGCCAAATCATCTTGAATCTACTTCGATGTGAAAACATCCAAATGAT
* *
66395817 -AGATCTGCTATGTCTACGATCTGCTC
1 CAGATCTGCTATGTCTTCGATTTGCTC
66395843 TCCGTCGAAT
Statistics
Matches: 296, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
309 291 0.98
310 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (310 bp):
CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGACCTAC
TTCGATGTGAAAACAACCAAAGGTCAGACCTGCTACGTCTTCGATCTACCCTCCATCAAATATAG
ACATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATC
CACTTCAGTGTAAACACCTGAAAGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAACACAA
GAATGCCAAATCATCTTGAATCTACTTCGATGTGAAAACATCCAAATGAT
Found at i:66395751 original size:529 final size:529
Alignment explanation
Indices: 66394973--66396056 Score: 1658
Period size: 529 Copynumber: 2.0 Consensus size: 529
66394963 TAAACACCTG
* *
66394973 AAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGCT
* * * * * * * *
66395038 TCCGCTTCGATGTGAAAACATCCAATGGTCAGATCTGCTATGTTTTCGATCTGCTCTTCGTCGAA
66 ACCGCTTCGATGTGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAA
* *
66395103 TATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAACTCATCTT
131 TATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAACTCATCTT
* * * *
66395168 GGATCTGCTTCAGTGTAAACACCTGAAGTCCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAA
196 GGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAA
* *
66395233 CACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAAAACATCCAAA-GGTCAGATCTGCT
261 CACAAGAATGCCAAATCATCTTGAACCTACTTCGATGTGAAAACATCCAAATGAT-AGATCTGCT
* * * * *
66395297 ACGTCTTCGATCTGCTCTGCATTAAATATG-GAGATGCCAAATCTATTTTTTCGATTTGTTCTCT
325 ACGTCTACGATCTGCTCTCCATCAAATATGTG-GATGACAAATCTATTTCTTCGATTTGTTCTCT
* * *
66395361 GACAATACAGAGATGCCAAATCATCTTGGATCCGCTTTAGT-GTAAACACCTGAAA-GTCAGATC
389 GACAATACAGAGATGCCAAATCATCTTGGATCCACTTCA-TAGTAAACAACT-AAAGGTCAGATC
* ** *
66395424 TGCTATGTCTTTGATTTTCTGCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTACTTCGAT
452 TGCTATGCCTTCAATTTGCTGCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTACTTCGAT
66395489 GTGAAATCGTCCA
517 GTGAAATCGTCCA
*
66395502 CAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTT-CT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGCT
* *
66395566 ACCTGCTTTGATGTGAAAACAACCAAAGGTCAGACCTGTTATGTCTTCGATCTACCCTCCGTCGA
66 ACC-GCTTCGATGTGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGA
66395631 ATATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCATA-TCATC
130 ATATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCA-ACTCATC
66395695 TTGGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTA
194 TTGGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTA
* * *
66395760 AACACGAGAATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAATGATAGATCTGC
259 AACACAAGAATGCCAAATCATCTTGAACCTACTTCGATGTGAAAACATCCAAATGATAGATCTGC
* * * *
66395825 TATGTCTACGATCTGCTCTCCGTCGAATATGTGGATGACAAATCTGTTTCTTCGATTTGTTCTCT
324 TACGTCTACGATCTGCTCTCCATCAAATATGTGGATGACAAATCTATTTCTTCGATTTGTTCTCT
*
66395890 GACAATACAGAGATGCCAAATCATCTTGGATCTACTTCATAGTAAACAACTAAAGGTCAGATCTG
389 GACAATACAGAGATGCCAAATCATCTTGGATCCACTTCATAGTAAACAACTAAAGGTCAGATCTG
* * * *
66395955 CTATGCCTTCAATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTGGATCTGCTTTGATGT
454 CTATGCCTTCAATTTGCTGCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTACTTCGATGT
66396020 GAAATCGTCCA
519 GAAATCGTCCA
*
66396031 AAGGTCAAATCTGCTATGTCTTCGAT
1 AAGGTCAGATCTGCTATGTCTTCGAT
66396057 CTTCTCTCCA
Statistics
Matches: 502, Mismatches: 47, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
528 7 0.01
529 491 0.98
530 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (529 bp):
AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGCT
ACCGCTTCGATGTGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAA
TATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAACTCATCTT
GGATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAA
CACAAGAATGCCAAATCATCTTGAACCTACTTCGATGTGAAAACATCCAAATGATAGATCTGCTA
CGTCTACGATCTGCTCTCCATCAAATATGTGGATGACAAATCTATTTCTTCGATTTGTTCTCTGA
CAATACAGAGATGCCAAATCATCTTGGATCCACTTCATAGTAAACAACTAAAGGTCAGATCTGCT
ATGCCTTCAATTTGCTGCTTGTAAACACAAGAATGCCAAATCATTTTGGATCTACTTCGATGTGA
AATCGTCCA
Found at i:66395831 original size:220 final size:220
Alignment explanation
Indices: 66395503--66398262 Score: 3863
Period size: 220 Copynumber: 12.5 Consensus size: 220
66395493 AATCGTCCAC
** *
66395503 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCTAC
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * * * *
66395568 CTGCTTTGATGTGAAAACAACCAAAGGTCAGACCTGTTATGTCTTCGATCTACCCTCCGTCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * * *
66395633 ATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCATATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
*
66395698 GATCTACTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * * * *
66395723 AGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAACACGAGAATGCCAAATCATCTTGAAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* *
66395788 CTGCTTCGATGTGAAAACATCCAAATGAT-AGATCTGCTATGTCTACGATCTGCTCTCCGTCGAA
66 CTGCTTCGATGTGAAAACATCCAAA-GGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
*
66395852 TATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
130 TATG-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* * *
66395916 TGGATCTACTTCA-TAGTAAACAACTAA
194 TGGATCTGCTTCAGT-GTAAACACCTGA
* * * * *
66395943 AGGTCAGATCTGCTATGCCTTCAATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * * * *
66396008 CTGCTTTGATGTGAAATCGTCCAAAGGTCAAATCTGCTATGTCTTCGATCTTCTCTCCATCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * *
66396073 ATGGACATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
*
66396138 GATCTACTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * **
66396163 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTAGTAAACACAAGAATGCCAAATCATCATATAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * * * * *
66396228 CTGTTTGGATGTGAAAACATTCAAAGGTCAGATTTGCTACGTCTTCGATCTACTCTTCGTCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * **
66396293 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGCCAATACAGAAACACCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
66396358 GATCTGCTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * * * *
66396383 AGGTCAAATCTACTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCGAAATCATTTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * * * * * *
66396448 CTGCTTCGATGTGAAATCGTCCAAAGGTCTGATCTGCTATTTCTTCGAACTTCTCTCCATTGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
** * * **
66396513 ATACAGATTCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGAAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
*
66396578 GATCTACTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* *
66396603 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCCTAGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* *
66396668 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* **
66396733 ATGGAGATGCCAAATCTGTTTCATCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
66396798 GATCTGCTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * * ** * *
66396823 AGGTCAAATCTACTATGTCTTTGATTTTTTCCTTGTGAACACAAGAATGCCAAATCATTTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * *
66396888 CTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCAAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* ****
66396953 ATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACAGAGATGCCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
* *
66397018 GCTCTGCTTCAGTGTAAACACCTAA
196 GATCTGCTTCAGTGTAAACACCTGA
* * * * **
66397043 AGGTCAGATCTGCTATATCTTCGATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGTTT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * * **
66397108 CTGCTTTGATGTGAAAACAACCAACGGTCAGATCTGCTATGTCTTCGATCTGGTCTCCGTAAAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * ****
66397173 ATGGAGATGTCAAATCTGTTTCTTCAATCCCCTCTCTGACAATACAGAGATGCCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
* * * *
66397238 GAACCGCTTCAGAGTAAGCACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * **
66397263 AGGTCAGATCGGCTATGTCTTCGATTTGCTCCTTGTAAACACAGGAATGGTAAATCATCTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* *
66397328 CTGCTTCGATCTGAAAACATCCAAAGGTCAGATTTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * *
66397393 ATGGAGATGCCAAATCTATTTCTTCGATTTTTTCTATGACAATACAGAGATGCCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
*
66397458 GATCTACTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * * * * * *
66397483 ACGTCAGATTTGCTATGTCTTCAATTTACTCATTGTAAACACAAGAATTCTAAATCATCTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * *
66397548 CTGTTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATTTTCTCTCCGTCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
*
66397613 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
*
66397678 GATCTGCTTCAGTGTAAACAACTGA
196 GATCTGCTTCAGTGTAAACACCTGA
* * * *
66397703 AGGTCAGATCTACTATGTCTTCGATTTACTCATTGTAAACACAAGAATGCCAAATCATGTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
*
66397768 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCACTCCGTCGAAT
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
* * * * *
66397833 ATGGAGATGCCAAATCAGTTTCTTTGATTTGTTCTCTAACAATACAGAGATGCCAACTCAACTTG
131 ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
66397898 GATCTGCTTCAGTGTAAACACCTGA
196 GATCTGCTTCAGTGTAAACACCTGA
66397923 A-GTCCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AGGT-CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * * * *
66397987 CCTACTTCGATGTGAAAATATCCAAAGCTCAGATCTGCTACGTCTTCGATCTGCTCTGCATTGAA
65 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
* * * *
66398052 TATGGAGATGCCAAATCTATTTTTTTGATTTGTTCTCTGATAATACAGAGATGCCAAATCATCTT
130 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66398117 GGATCTGCTTCAGTGTAAACACCTGA
195 GGATCTGCTTCAGTGTAAACACCTGA
* * * * * *
66398143 AAGTCAGATCTGATATGTCTTTGATTTTCTGCTTGTAAACACAAGAATGCCAAATCATTTTGGAT
1 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * *
66398208 CTACTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATTTGCTC
66 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
66398263 CTTGTAAACA
Statistics
Matches: 2245, Mismatches: 287, Indels: 16
0.88 0.11 0.01
Matches are distributed among these distances:
219 6 0.00
220 2233 0.99
221 6 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
ATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAGTGTAAACACCTGA
Found at i:66395972 original size:749 final size:749
Alignment explanation
Indices: 66394754--66396220 Score: 2258
Period size: 749 Copynumber: 2.0 Consensus size: 749
66394744 AAGCACCTGA
* ** * *
66394754 AGGTCAGATCGGCTATGTCTTCGATTTGCTCCTTGTAAACACAGGAATGGTAAATCATCTTGGAT
1 AGGTCAGATCGGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGAC
* * * * *
66394819 CTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGTTTTCGATCTGCTCTCCGTCGAAT
66 CTGCTTCGATATGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAAT
* * * *
66394884 ATGGAGATGCCAAATCTGTTTCTTTGATTTTTTCTATGACAATAGAGAGATGCCAAATCATCTTG
131 ATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTATGACAATACAGAGATGCCAAATCATCTTG
* * * * *
66394949 GATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAAC
196 GATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCAATTTGCTCCTTGTAAAC
** *
66395014 ACAAGAATGCCAAATCATCTTGGTTCCGCTTCGATGTGAAAACATCCAATGGTCAGATCTGCTAT
261 ACAAGAATGCCAAATCATCTTGAATCCGCTTCGATGTGAAAACATCCAATGATCAGATCTGCTAT
* * * * *
66395079 GTTTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGAC
326 GTCTACGATCTGCTCTCCGTCGAATATGGAGATGACAAATCTGTTTCTTCGATTTGTTCTCTGAC
* * * *
66395144 AATACAGAGATGCCAACTCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGTCCAGATCTGCTA
391 AATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGTCCAGATCTGCTA
* *
66395209 TGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAA
456 TGCCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAA
* * * *
66395274 AACATCCAAAGGTCAGATCTGCTACGTCTTCGATCTGCTCTGCATTAAATATGGAGATGCCAAAT
521 AACATCCAAAGGTCAAATCTGCTACGTCTTCGATCTGCTCTCCATCAAATATGGACATGCCAAAT
* * *
66395339 CTATTTTTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCCGCTTTAGTGT
586 CTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCCACTTCAGTGT
* * * *
66395404 AAACACCTGAAAGTCAGATCTGCTATGTCTTTGATTTTCTGCTTGTAAACACAAGAATGCCAAAT
651 AAACACCTGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTAGTAAACACAAGAATGCCAAAT
66395469 CATTTTGGATCTACTTCGATGTGAAATCGTCCAC
716 CATTTTGGATCTACTTCGATGTGAAATCGTCCAC
* *
66395503 AGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCTAC
1 AGGTCAGATCGGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGAC
* * *
66395568 CTGCTTTGATGTGAAAACAACCAAAGGTCAGACCTGTTATGTCTTCGATCTACCCTCCGTCGAAT
66 CTGCTTCGATATGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAAT
* *
66395633 ATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCATATCATCTTG
131 ATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTATGACAATACAGAGATGCCAAATCATCTTG
*
66395698 GATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCGATTTGCTCCTTGTAAAC
196 GATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCAATTTGCTCCTTGTAAAC
* *
66395763 ACGAGAATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAATGAT-AGATCTGCTA
261 ACAAGAATGCCAAATCATCTTGAATCCGCTTCGATGTGAAAACATCC-AATGATCAGATCTGCTA
66395827 TGTCTACGATCTGCTCTCCGTCGAATATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTG
325 TGTCTACGATCTGCTCTCCGTCGAATATG-GAGATGACAAATCTGTTTCTTCGATTTGTTCTCTG
66395891 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCA-TAGTAAACAACTAAAGGT-CAGATCT
389 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGT-GTAAACAACTAAA-GTCCAGATCT
* * * * * *
66395954 GCTATGCCTTCAATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTGGATCTGCTTTGATG
452 GCTATGCCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATG
* * * * *
66396019 TGAAATCGTCCAAAGGTCAAATCTGCTATGTCTTCGATCTTCTCTCCATCGAATATGGACATGCC
517 TGAAAACATCCAAAGGTCAAATCTGCTACGTCTTCGATCTGCTCTCCATCAAATATGGACATGCC
* *
66396084 AAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGCAAATCATCTTGGATCTACTTCA
582 AAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCCACTTCA
*
66396149 GTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTAGTAAACACAAGAATGCC
647 GTGTAAACACCTGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTAGTAAACACAAGAATGCC
66396214 AAATCAT
712 AAATCAT
66396221 CATATATCTG
Statistics
Matches: 646, Mismatches: 68, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
748 1 0.00
749 637 0.99
750 8 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (749 bp):
AGGTCAGATCGGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTCGAC
CTGCTTCGATATGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAAT
ATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTATGACAATACAGAGATGCCAAATCATCTTG
GATCTACTTCAGTGTAAACACCTGAAGGCCAAATCTGCTATATCTTCAATTTGCTCCTTGTAAAC
ACAAGAATGCCAAATCATCTTGAATCCGCTTCGATGTGAAAACATCCAATGATCAGATCTGCTAT
GTCTACGATCTGCTCTCCGTCGAATATGGAGATGACAAATCTGTTTCTTCGATTTGTTCTCTGAC
AATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAACTAAAGTCCAGATCTGCTA
TGCCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAA
AACATCCAAAGGTCAAATCTGCTACGTCTTCGATCTGCTCTCCATCAAATATGGACATGCCAAAT
CTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCCACTTCAGTGT
AAACACCTGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTAGTAAACACAAGAATGCCAAAT
CATTTTGGATCTACTTCGATGTGAAATCGTCCAC
Found at i:66396987 original size:44 final size:43
Alignment explanation
Indices: 66396929--66397011 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
66396919 ATCTGCTATG
* * * **
66396929 TCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCACTCTCCGAC-AATACAGAGATGCCAAATCTGTT
*
66396973 TCTTCAATCCACTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCAATCCACTCTCCGACAATACAGAGATGCCAAATC
66397012 ATCTTGGCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (43 bp):
TCTTCAATCCACTCTCCGACAATACAGAGATGCCAAATCTGTT
Found at i:66398258 original size:89 final size:89
Alignment explanation
Indices: 66398102--66398345 Score: 316
Period size: 89 Copynumber: 2.8 Consensus size: 89
66398092 TAATACAGAG
* * *
66398102 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAAC-ACCTGAAA-GTCAGATCTGATATGTCT
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACC--AAAGGTCAGATCTGCTATGTCT
* * *
66398163 TTGATTTTCTGCTTGTAAACACAAGA
64 TCGATTTGCTCCTTGTAAACACAAGA
* * **
66398189 ATGCCAAATCATTTTGGATCTACTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTC
66398254 GATTTGCTCCTTGTAAACACAAGA
66 GATTTGCTCCTTGTAAACACAAGA
* * * *
66398278 ATGCCAAATCATCTTGTATCTGCTTTGATGTGAAAACAACCAAAGGTCAGACCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTC
66398343 GAT
66 GAT
66398346 CTACCCTCCG
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
87 24 0.18
88 4 0.03
89 106 0.78
90 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTC
GATTTGCTCCTTGTAAACACAAGA
Found at i:66398512 original size:87 final size:89
Alignment explanation
Indices: 66398411--66398571 Score: 211
Period size: 89 Copynumber: 1.8 Consensus size: 89
66398401 CAATACAGAG
* * * *
66398411 ATGCCATATCATCTTGGATCTACTTC-A-GTGTAAACA-CCTGAAGGCCAGATCTGCTATATCTT
1 ATGCCAAATCATCTTGAATCTACTTCGATGTGAAAACATCC-AAAGGCCAGATCTGCTATATCTT
*
66398473 CGATTTGCTCCTTGTAAACACGAGA
65 CGATCTGCTCCTTGTAAACACGAGA
* ** *
66398498 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGAATCTACTTCGATGTGAAAACATCCAAAGGCCAGATCTGCTATATCTTC
66398563 GATCTGCTC
66 GATCTGCTC
66398572 TCCGTCGAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 23 0.37
88 1 0.02
89 36 0.58
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGAATCTACTTCGATGTGAAAACATCCAAAGGCCAGATCTGCTATATCTTC
GATCTGCTCCTTGTAAACACGAGA
Found at i:66398544 original size:220 final size:220
Alignment explanation
Indices: 66398231--66414317 Score: 14920
Period size: 220 Copynumber: 73.1 Consensus size: 220
66398221 AAATCGTCCA
*
66398231 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGTA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66398296 TCTGCTTTGATGTGAAAACAACCAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * *
66398361 TATAGACATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCATATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66398426 GGATCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * *
66398451 AAGGCCAGATCTGCTATATCTTCGATTTGCTCCTTGTAAACACGAGAATGCCAAATCATCTTGAA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66398516 TCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66398581 TATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
131 TATG-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* * *
66398645 TGGATCTACTTCA-TAGTAAACAACTA
195 TGGATCTGCTTCAGT-GTAAACACCTG
* * * *
66398671 AAGGTCAGATCTGCTATGCCTTCGATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * * *
66398736 TCTGCTTTGATGTGAAATCGTCCAAAGGTCAAATCTGCTATGTCTTTGATCTTCTCTCCATCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* *
66398801 TATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66398866 GGATCTACTTCAGCGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* **
66398891 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCATATA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66398956 TCTGCTTCGATGTGAAAACATTCAAAGGTCAGATTTGCTACGTCTTCGATCTACTCTTCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* **
66399021 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGCCAATACAGAGACACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66399086 GGATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * *
66399111 AAGGTCAAATCTACTATGCCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* ** * * * * * *
66399176 TCTGCTTCGATTTGAAGTCGTCCAAAGGTCAGATCTGCTATTTCTTCGAACTTCTCTCCATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
** * * **
66399241 TATACAGATTCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGAAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66399306 GGATCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
*
66399331 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66399396 TCTGCTTCGATGTGAAAACATCCACAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* **
66399461 TATGGAGATGCCAAATCTGTTTCATCGATTTGTTCTCTGACAATACAGAGACACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66399526 GGATCTGCTTCAGTGTAAACACTTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * * *
66399551 AAGGTCAAATCTACTATGTCTTTGATTTTCTCCTTGTGAACACAAGAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66399616 TCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* ****
66399681 TATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* * *
66399746 GGCTCTACTTCAGTGTAAACACCTA
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * **
66399771 AAGGTCAGATCTGCTATATCTTCGATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGTT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * ** **
66399836 TCTGCTTTGATGTGAAAACAACCAATGGTCAGATCTGCTATGTCTTCGATCTGGTCTCCGTAAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * ***
66399901 TATGGAGATGTCAAATCTGTTTCTTCAATCCCCTT-TCTGACAATACAGAGATGCCAAATCATCT
131 TATGGAGATGCCAAATCTGTTTCTTCGAT-TTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* * * *
66399965 TGGAACCGCTTCAGAGTAAGCACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* **
66399991 AAGGTCAGATCGGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGGTAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66400056 TCTGCTTCGATGTGAAAACATCCAAATGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * * * *
66400121 TATGGAGATGCCAAATCTATTTCTTTGATTTTTTCTATGACAATAGAGAGATACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66400186 GGATCTGCTTTAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66400211 AAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * *
66400276 TCCGCATCGATGTGAAAACATCCAATGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66400341 TATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66400406 GGATCTGCTTTAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
*
66400431 AAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTT-GA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66400495 TCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTCGATCTGCTCTTCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * *
66400560 TATGGGGATGACAAATCTGGTTCTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*** * * *
66400625 GGATCAAATTCAGAGTAAACTA-ATA
196 GGATCTGCTTCAGTGTAAAC-ACCTG
66400650 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66400715 TCCGCTTCGATGTGAAAACATCCAATGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66400780 TATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66400845 GGATCTGCTTTAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
*
66400870 AAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * *
66400935 TCCGCTTCGATGTGAAATCATCCAAAGGTCAGATTTGCTATGTCTTCGATCTTCTCTCCATCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* *
66401000 TATGAAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCAAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66401065 GGATCTGCTTCAGTGTAAAAACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * *
66401090 AAGGTCAGATCTGCTATGTCTTCAATTTTCCCCTTGTAAACACAAGAATG-CAAATCATCTTGAA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * *
66401154 TCTGCTTC-ATTATGCAAACATCCAAAGGTTAGATCTGCTATGCCTTCGATCTGCTCTCCGTCGA
66 TCTGCTTCGA-TGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
* *
66401218 ATATGGAGATGCCAAATCTGTTTCTTCGATTTTTTCTCTGACAATACATAGATGCCAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* *
66401283 TGGATCTGTTTCAGTGTAAACAACTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * * **
66401309 AAGGTCAGATCTACTATGTCTTCGATCTGTTCTCC--GTCGAATA-TGGAGATGCCAAATCTATT
1 AAGGTCAGATCTGCTATGTCTTCGAT-T-TGCTCCTTGT-AAACACAAGA-ATGCCAAATC-A--
* ** * * * * * ** *
66401371 TATTCAATTTGTTCTCAGATATGTAGA-AT-C--ATCTTAGATCTGCTTCAGTGTAAACACCTAA
59 TCTTGGATCTGCT-TC-GATGTGAAAACATCCAAAGGTCAGATCTGC-T-A-TGT------CT--
* * * * * * ** ** * *
66401432 AGGTCAGATCTGCTATGTCTTCGACT-TGCTCCTTGTAAACACCAGAATGCAAATCATCTTGGAT
111 ---TC-GATCTACTCT-CCGTCGAATATG------G-AGATGCCA-AAT-C-TGT-TTCTTCGAT
* * * * * * * * * **
66401496 CTGCTTCGATGTGA-AA-ACATCCAAAGGTCATATATGCTATGTCTTCGATCTACTCTCCGT-CG
160 TTG-TTC--TCTGACAATACA--GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-TCAGTGTA
*
66401558 AATA--TGG
213 AACACCT-G
* * * * *
66401565 AGATGCCA-ATCTG-T-TTTCTTCGATTTGTTCTCC--G-ACAATAC-AGAGATACCAAATCATC
1 A-AGGTCAGATCTGCTATGTCTTCGATTTG--CTCCTTGTA-AACACAAGA-ATGCCAAATCATC
*** * * * *
66401623 TTGGATCAAATTCAGA-GT-AAACAAAT--AAAGGTCAGATCTGCTATTTCTTCGATTTGCT-TC
61 TTGGATCTGCTTC-GATGTGAAA-ACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTC
* * * * * * * * *
66401683 TTGT-AAACACAGTA-ATGCCAAATC--ATT-TTGGATTTGTTTCGATGTGA-AATCGTCCAAAG
124 -CGTCGAATA-TGGAGATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAA---T--ACA-
** * * * * *
66401742 GTCAGAT-CTCCTAT-GTCTTCGATCTTCTCTCCA-T-CAAATA--TGG
178 G--AGATGC-CAAATCATCTTGGATCTGCT-T-CAGTGTAAACACCT-G
* * * * * *
66401785 AGATGCCAAATCTG-T-T-TCTTTGATTTG-TTCTCTG-ACAATAC-AGAGATGCCAAATCATCT
1 A-AGGTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCT
* * * * * *
66401844 TGGATCTGCTT-TA-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTC-CTT
62 TGGATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTC-C
* * ** * * * * *
66401905 GT-AAACA-CAAGAATGCCAAATC---ATCTT-GATCTGCTTCGATGTGAAAACATCCAAAGGTT
125 GTCGAATATGGAG-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTG-ACA-AT--ACA-G--
*** * * * ***
66401964 AGAT-CTGGTAT-GTCTTCGATCTGCTCTTC-GTCG--AATATGGG
179 AGATGC-CAAATCATCTTGGATCTG--CTTCAGT-GTAAACACCTG
* * * * * * * *
66402005 GATGACAAATCTG--GT-TCTTCGATTTG-TTCTCTG-ACAATAC-AGAGATGTCAAATCATCTT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTT
*** * *
66402064 GGATCAAATTCAGA-GT--AAACTAAT--AAAGGTCAGATCTGCTATGTCTTCGATTTGCTC-CT
63 GGATCTGCTTC-GATGTGAAAAC--ATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTC-
* * * ** * * ** * *
66402123 TGT-AAACA-CAAGAATGCCAAATC---ATCTTGGATCCGCTTCGATGTGA-AA-ACATCCA-AT
124 CGTCGAATATGGAG-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA--GAGAT
* * * * * *
66402180 GGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCG--AATA--TGG
183 -GCCA-A-AT-C-A--TCTTGGATCTGCT-TCAGT-GTAAACACCT-G
* * * * * *
66402224 AGATGCCAAATCTG-T-T-TCTTTGA-TTG-TTCTCTG-ACAATAC-AGAGATGCCAAATCATCT
1 A-AGGTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCT
* * * * * *
66402282 TGGATCTGCTT--A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCTC-CTT
62 TGGATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTC-C
* * ** * * * *
66402342 GT-AAACA-CAAGAATGCCAAATCATCTTGGATCCGCTTCGATGTGAAATCATC-CA-AAGGT-C
125 GTCGAATATGGAG-ATGCCAAATC-TGTT---T---CTTCGATTTG--TTC-TCTGACAA--TAC
** * * * * * *
66402402 AGATTTG-C-TAT-GTCTTCGATCTTCTCTCCA-T-CAAATA--TG
177 AGAGATGCCAAATCATCTTGGATCTGCT-T-CAGTGTAAACACCTG
* * * *
66402441 AAGATGCCAAATCTG-T-T-TCTTCGA-TTG-TTCTCTG-ACAATAC-AGAGATG-CAAATCATC
1 AAG--GTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATC
* * *
66402498 TTGGATCTGCTTC-A-GTGTAAAA-A-CCTGAAGGTCAGATCTGCTATGTCTTCAAT-T-TTC-C
61 TTGGATCTGCTTCGATGTG-AAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTACTCTC
* * *** * * * * * *
66402556 CCTTGTAA-ACACAAGAATG-CAAATC---ATCTT-GAATCTGCTTCATTATGCAAACATCCAAA
124 CGTCG-AATA-TGGAG-ATGCCAAATCTGTTTCTTCG-ATTTG-TTC--TCTG-ACA-ATACAGA
* *** ** * * *
66402615 GGTTAGATCTGCTATGCCTTCGATCTGCTCTCCGTCG--AATA--TGG
180 GATGCCAAAT-C-AT--CTTGGATCTGCT-TCAGT-GTAAACACCT-G
* * * * * *
66402659 AGATGCCAAATCTG-T-T-TCTTCGATTT-TTTCTCTG-ACAATACATAG-ATGCCAAATCATCT
1 A-AGGTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACA-AGAATGCCAAATCATCT
* * * ** * **
66402718 TGGATCTGTTTC-A-GTGTAAACAACTGAAGGTCAGATCTACTATGTCTTCGATCTGTTCTCCGT
62 TGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGT
* * * * * *
66402781 CGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTC--A-GATA-TG-TA-G---AATCA
127 CGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCA
* *
66402837 TCTTAGATCTGCTTCAGTGTAAACACCTA
192 TCTTGGATCTGCTTCAGTGTAAACACCTG
* *
66402866 AAGGTCAGATCTGCTATGTCTTCGACTTGCTCCTTGTAAACACCAGAATG-CAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66402930 TCTGCTTCGATGTGAAAACATCCAAAGGTCATATATGCTATGTCTTCGATCTACTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* *
66402995 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACAATACAGAGATACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*** * ** *
66403060 GGATCAAATTCAGAGTAAACAAATA
196 GGATCTGCTTCAGTGTAAACACCTG
* * *
66403085 AAGGTCAGATCTGCTATTTCTTCGATTTGCTTCTTGTAAACAC-AGTAATGCCAAATCATTTTGG
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAG-AATGCCAAATCATCTTGG
* * * * * * * * *
66403149 ATTTGTTTCGATGTGAAATCGTCAAAAGGTCAGATCTCCTATGTCTTCGATCTTCTCTCCATCAA
65 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
* * *
66403214 ATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAGTACAGAGATGCTAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66403279 TGGATCTACTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
66403305 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66403370 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCATCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * **
66403435 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCACTGACAATATAGAGACACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66403500 GTATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * **
66403525 AAGGTCCA-ATCTACTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTAT
1 AAGGT-CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * * * *
66403589 ATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATG-CTTTTGGTCTGCTCTCCATTG
65 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTC-TTCGATCTACTCTCCGTCG
** *
66403653 AATATAAAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATC
129 AATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATC
*
66403718 TTGGATCTGCTTTAGTGTAAACACCTG
194 TTGGATCTGCTTCAGTGTAAACACCTG
* *
66403745 AAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGAA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66403810 TCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * * * *
66403875 TATGGGGATGACAAATCTGGTTCTTCGATTTGTTCTCTGACAGTACAAAGATGTCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *** * * ** *
66403940 GGGTCAAATTCAGAGAAAACAAATA
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * *
66403965 AAGGTCAGATCTGCTATGTCTTCGATTTGCTTCTAGTAAACA-TAGTAGTGCCAAATCATTTTGG
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAG-AATGCCAAATCATCTTGG
* * * * *
66404029 ATCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCATCAA
65 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
66404094 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATA-AGAGATGCCAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66404158 TGGATCTACTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * *
66404184 AAAGTTAGATCTGCTATGTCTTCGATTTCCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66404249 TCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCCATCTGCTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
** ** *
66404314 TATGGAGATGCCAAATCTGTTTCTTAAATCCGCTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66404379 GGCTCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
*
66404404 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGAA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66404469 TCTGCTTCTATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66404534 TATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
131 TATG-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* * *
66404598 TGGATCTACTTCA-TAGTAAACAACTA
195 TGGATCTGCTTCAGT-GTAAACACCTG
* * * *
66404624 AAGGTCAGATCTGCTATGTCTTCGATTTGTTTCTTGTAAACACAATAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * **
66404689 TCTGCTGT-GATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCAACGA
66 TCTGCT-TCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
* * *
66404753 ATATTGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66404818 TGGATCTACTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * * *
66404844 AAGGTCAAATCTGTTATGTCTTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCATAGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66404909 TCTGCTTTGATGTGAAAACATCCAAAGGTCAGATTTGCTACGTCTTCGATCTAATCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * **
66404974 TATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTCTTACAATACAGAGACACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66405039 GGATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * *
66405064 AAGGTCAAATCTACTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATTATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * ** *
66405129 TCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATTTCTTCGAACTTCTCTCTATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * *
66405194 TATGGAGATTCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66405259 TGATCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66405284 AAGGTCAGATCTACTATGTCTTGGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
*
66405349 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66405414 TATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66405479 GGATCTGCTTCAATGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66405504 AAGGCCAGATTTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66405569 CCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCT-TGTCTTCGATCTGCTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * *
66405633 TATGGAGATGCCAAATCTGTTTCTTCAATCTGCTCTCTGACAATATAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66405698 AGATCCGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * *
66405723 AAGGTCAAATCTGCTATGTCATCAATTTGCTCATTGTAAACACAAGAATGCCAAATCATCTTAGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * *
66405788 TCTGCTTCGATGTGAAAACGTCCAAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTGCATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
** *
66405853 TATGGAGATGCCAAATCAATTTCTTCGATTTGTTCTCTGACAAAACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66405918 GGATCTGCTTCAGTGTAAACACCTA
196 GGATCTGCTTCAGTGTAAACACCTG
* * *
66405943 AAGGTCAGATCTGCTATGTCTTTGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * *
66406008 TCTGATTCGATGTGAAATCGTCCAAAGGTCAGATCTACTATGTCTTCGATCTACTCTCTGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* **** *
66406073 TATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACATTACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66406138 GGCTCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
*
66406163 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGAA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66406228 TCTGCTTCTATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66406293 TATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
131 TATG-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* * *
66406357 TGGATCTACTTCA-TAGTAAACAACTA
195 TGGATCTGCTTCAGT-GTAAACACCTG
* * *
66406383 AAGGTCAGATCTGCTATGTCTTCGATTTGCTTCTTGTAAACACAATAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * **
66406448 TCTGCTGT-GATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCAACGA
66 TCTGCT-TCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
* * *
66406512 ATATTGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66406577 TGGATCTACTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * * *
66406603 AAGGTCAAATCTGTTATGTCTTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCATAGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66406668 TCTGCTTTGATGTGAAAACATCCAAAGGTCAGATTTGCTACGTCTTCGATCTAATCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * **
66406733 TATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTCTTACAATACAGAGACACCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66406798 GGATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * *
66406823 AAGGTCAAATCTACTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAAT--TTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * ** *
66406886 TCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATTTCTTCGAACTTCTCTCTATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * *
66406951 TATGGAGATTCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66407016 TGATCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66407041 AAGGTCAGATCTACTATGTCTTGGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
*
66407106 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66407171 TATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66407236 GGATCTGCTTCAATGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66407261 AAGGCCAGATTTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66407326 CCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * *
66407391 TATGGAGATGCCAAATCTGTTTCTTCAATCTGCTCTCTGACAATATAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66407456 AGATCCGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * *
66407481 AAGGTCAAATCTGCTATGTCATCAATTTGCTCATTGTAAACACAAGAATGCCAAATCATCTTAGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * *
66407546 TCTGCTTCGATGTGAAAACGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTGCATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
**
66407611 TATGGAGATGCCAAATCAATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66407676 GGATCTGCTTCAGTGTAAACACCTA
196 GGATCTGCTTCAGTGTAAACACCTG
* * *
66407701 AAGGTCAGATCTGCTATGTCTTTGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * *
66407766 TCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTACTATGTCTTCGATCTACTCTCTGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * * *
66407831 TATGGAGATGCCAAATCTGTTTCTTC-AATCGACTCTCTGACAGTAAAGAGATGCCAAATCATCT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTG-TTCTCTGACAATACAGAGATGCCAAATCATCT
*
66407895 TGGCTCTGCTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * **
66407921 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGTT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66407986 TTTGCTTTGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTCGATC-AGCTCTCCGTTGA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTA-CTCTCCGTCGA
** * * *
66408050 ATATAAAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGATGCAAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66408115 TGGATCTTCTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* *
66408141 AAGGCCAGATCTGCTATGTCTTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66408206 CCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATTTTCTCTCCGTC-AT
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA-
* * **** *
66408270 ATATGGAGATGCCAAATCTGTTACTTCAATCCCCTCTCTGACAATACAGAGATGCCAAATCATAT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* ** *
66408335 TAGATCCACTTCAGAGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * *
66408361 AAGGTCAGATCTGCTATGTTTTCAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCTTAGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * *
66408426 TCTGCTTCGATGTGAAAACGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTGCATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * *
66408491 TATGGTGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGGCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66408556 GGATCTACTTCAGTGTAAACACCTA
196 GGATCTGCTTCAGTGTAAACACCTG
* * *
66408581 AAGGTCAGATCTGCTATGTCTTTGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATTTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * *
66408646 TTTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* **** *
66408711 TATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACATTACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66408776 GGCTCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * **
66408801 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTGGTAAACACAAGAATGCCAAATAATATTGTT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * **
66408866 TCTGCTTTGATGTGAAAACAACCAAAGGTCAGATCTGCTATCTCTTCGATCTGCTCTCTGTTTAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
** * *
66408931 TATAAAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*
66408996 GGATCTACTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66409021 AAGGCCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGCA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66409086 CCTGCTTCGATGTGAAAACATCCATAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* **** * *
66409151 TATGGAGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACAATATAGAGATGCCAAATCATATT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* ** *
66409216 AGATCCACTTCAGAGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
*
66409241 AAGGTCAGATCTGCTATGTTTTCGATTTGC-CCTTTGTAAACACAAGAATGCCAAATCATCTTGG
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCC-TTGTAAACACAAGAATGCCAAATCATCTTGG
* * ** **
66409305 ATCTGCTTCGATGTAAAAACATCCAAAGGTCAGATCTGCTATATCTTCGATCTGTTCTCCGTTAA
65 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
* * *
66409370 ATTTAGAGATGCCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
* *
66409435 TGGATCTACTTAAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * * *
66409461 AAGGTCAGATCTGCTATGTCTTCAATTTACTCCTCGTAAACACAAGAATTCTAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66409526 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGGTCTGCTATGTCTTTGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* *
66409591 TATGGAGATGCCAAATCTATTTTTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66409656 GGATCTGCTTCAGTG-AAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * * *
66409680 AAAGTCAGATCTACTATTTCTTCGATTTACTCCTTGTAAACACAAGAATTCCAAATCATATTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66409745 TCTGCTTCGATGTGAAAACATCTAAAGGTCAGATCTGCTATGTTTTC-ATTCTACTCTCCGTCGA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGA-TCTACTCTCCGTCGA
*
66409809 ATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
66409874 TGGATCTGCTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * * *
66409900 AAGGCCAGATCTGCTATGTCTTTGATTTTCTCCTTGTAAACAAAAGAATGGCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * * * *
66409965 CCTACTTCGATGTCAAAACATCCAAAGGTCAGATCTGCTATGTCTTGGATCTGCT-TCAGT-GTA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCG--
* * * * * * *
66410028 AACACCT-GA-AGGTCAAATCTACTATGTCTTTGATTTGCTC-CTTGTA-AACACA-AGAATGCC
129 AATA--TGGAGATGCCAAATCT-GT-T-TCTTCGATTTGTTCTC-TG-ACAATACAGAG-ATGCC
* * *
66410088 AAATCATTTTGGATCTGCTTC-GATGTGAAATCGTCC-A
186 AAATCATCTTGGATCTGCTTCAG-TGT-AAA-C-ACCTG
* * * ** *
66410125 AAGGTTAGATCTGCTATTTCTTCGAACTTCT-CTCCATTG--AATA-TGGAGATTCCAAATCTAT
1 AAGGTCAGATCTGCTATGTCTTCG-A-TT-TGCTCC-TTGTAAACACAAGA-ATGCCAAATC-A-
* * * * * * *
66410186 TTCTTCGATTTG-TTC--TCTGACAATACA--GAGATGG-CA-A-AT-C-A--TCTTGGATCTAC
59 -TCTTGGATCTGCTTCGATGTGA-AA-ACATCCA-AAGGTCAGATCTGCTATGTCTTCGATCTAC
* * * * * * *
66410239 T-TCAGT-GTAAACACCT-GA-AGGCCAGATCTGCTATGTCTTTGATTTGCTC-CTTGTA-AACA
120 TCTCCGTCG--AATA--TGGAGATGCCAAATCTG-T-T-TCTTCGATTTGTTCTC-TG-ACAATA
* * * *
66410298 CA-AGAATGCCATATCATCTTGGACCTGCTTCGATGTGAAAACATCC-A
176 CAGAG-ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTG
* * * ** *
66410345 AAGGACAGATCTGCTATGTCTTCGATCTT-CT-CTCCGTCAAATA-TGGAGATGCCAAATCTGTT
1 AAGGTCAGATCTGCTATGTCTTCGAT-TTGCTCCT-TGT-AAACACAAGA-ATGCCAAATC--AT
** * * * * * * * * * * *
66410407 ACTTCAATC-CCCTC--TCTGACAATACA--GAGATGCCA-A-AT-C-A--TATTAGATCCACT-
60 -CTTGGATCTGCTTCGATGTGA-AA-ACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTC
* * * * * * * * * *
66410460 TCAGAGT-AAACACCT-GA-AGGTCAGATCTGCTATGTTTTCGATTTG-CCCCTTGTA-AACACA
122 TC--CGTCGAATA--TGGAGATGCCAAATCTG-T-T-TCTTCGATTTGTTCTC-TG-ACAATACA
* * *
66410520 -AGAATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACATCC-A
178 GAG-ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTG
* * ** *
66410565 AAGGTCAGATCTGTTATGTCTTCGATCTGCTCTCCATTG-AATA-TGAAG-ATGCCAAATCTGTT
1 AAGGTCAGATCTGCTATGTCTTCGATTTG--CTCC-TTGTAA-ACACAAGAATGCCAAATC---A
* * * * * * * * * *
66410627 TCTTCGATTTG-TTC--TCTGACAATACA--GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-
59 TCTTGGATCTGCTTCGATGTGA-AA-ACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTC
* * * * * * * * *
66410680 TCAGT-GTAAAAACCT-GA-AGGTCAGATCTGCTATGTCTTCAATTTG-CCCCTTGTA-AACACA
122 TCCGTCG--AATA--TGGAGATGCCAAATCTG-T-T-TCTTCGATTTGTTCTC-TG-ACAATACA
* * * *
66410740 -AGAATGCCAAATCATCTTGAATCTACTTC-GTTATGCAAACATCC-A
178 GAG-ATGCCAAATCATCTTGGATCTGCTTCAG---TGTAAACA-CCTG
* * * * * **
66410785 AAGGTTAGATCTGCTATGCCTTTGATCTGCT-CTCCGTCGAATATGC-AG-ATGCCAAATCTATT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCT-TGT--AA-ACACAAGAATGCCAAATC-A--
* ** * * * * * * * * *
66410847 TCTTCGAT-TTTTTC--TCTGACAATACA--GAGATGCCA-A-AT-C-A--TCTTGGATCT-GTT
59 TCTTGGATCTGCTTCGATGTGA-AA-ACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTC
* * * * * * * * **
66410900 TCAGT-GTAAACACCT-GA-AGGTCAGATCTGCTATGTCTTCGATCTGTTCTCCGTCGAATATGG
122 TCCGTCG--AATA--TGGAGATGCCAAATCTG-T-T-TCTTCGATTTGTTCTCTGAC-AATACAG
* ** * * * * *
66410962 AGATGCCAAATCTATTTATTCAATTTG-TTC--T-TAGATA-TTT
179 AGATGCCAAATC-A--TCTTGGATCTGCTTCAGTGTAAACACCTG
* * * ** * * *
66411002 AA----A-A--T-C-A--TCTTAGATCTACTTCAGTGTAAACACCTA-AAGGTCAAATCTGCTAT
1 AAGGTCAGATCTGCTATGTCTTCGATTTGC-TCCTTGTAAACA-CAAGAATGCCAAA--T-C-A-
* * * * * * *
66411055 GTCTTCGA-CGTGC-TC-CT-TGTAAACA-CCAGAATG-CA-A-AT-C-A--TCTTGGATCTGCT
59 -TCTTGGATC-TGCTTCGATGTGAAAACATCCA-AAGGTCAGATCTGCTATGTCTTCGATCTACT
* * ** * * * * * * ** * * **
66411108 -T-CGATGTGAAAGCATCCAAAGGTCATATCTACTATGTCTTCGATCTACTCTCCGTCGAATATG
121 CTCCG-T-CG-AA-TATGGAGATGCCAAATCT-GT-T-TCTTCGATTTGTTCTCTGAC-AATACA
* * **
66411171 GAGATGCCAAATCTGTTTCTTCGAT-TAG-TTCTCTGATAATACA---G
178 GAGATGCCAAATC---ATCTTGGATCT-GCTTCAGTG-TAA-ACACCTG
* * * * * ** ** * *
66411215 AGATGCCA-A-AT-C-A--TCTTGGATCTGCTTCAGTGTAAA-ACCTGAA-GATCAGATCTGCTA
1 A-AGGTCAGATCTGCTATGTCTTCGATTTGC-TCCTTGTAAACACAAGAATG-CCA-A-AT-C-A
* * * * * * * * * * *
66411272 TGCCTTCGATTTAC-TC-CT-TGTAAACA-CAAGAATGCCA-A-AT-C-A--TCTTGGATCTGCT
59 T--CTTGGATCTGCTTCGATGTGAAAACATCCA-AAGGTCAGATCTGCTATGTCTTCGATCTACT
* * ** * * * * * * * * *
66411327 -T-CGATGTGAACACATCCAAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTC-CATCGAATAT
121 CTCCG-T-CG-A-ATATGGAGATGCCAAATCTG-T-T-TCTTCGATTTGTTCTCTGA-C-AATAC
* * * ** * *
66411389 GGAGATGCCAAATCAGTTTCTTTGATTTG-TTCTCTG-ACAATA-CAG
177 AGAGATGCCAAATCA---TCTTGGATCTGCTTCAGTGTA-AACACCTG
* ** * * ** * * * *
66411434 -AGATGCA-AAGT-C-A--TCTTGGATCTGCTTCAGTGTAAACATC-TGAAGGTCAGATCTGCTA
1 AAGGT-CAGATCTGCTATGTCTTCGATTTGC-TCCTTGTAAACA-CAAGAATGCCA-A-AT-C-A
* * * * * * * * * * *
66411492 TGTCTTCGATTTAC-TC-CT-TGTAAACA-CAAGAATGCCA-A-AT-C-A--TCTTGGATCTGCT
59 --TCTTGGATCTGCTTCGATGTGAAAACATCCA-AAGGTCAGATCTGCTATGTCTTCGATCTACT
* * ** * * * * **** * * **
66411547 -T-CGATGTGAAAACATCCAAAGGTCAGATCTGCTTCGTCTTCGATCAACTCTCCGTCGAATATG
121 CTCCG-T-CG--AATATGGAGATGCCAAATCTG-TT--TCTTCGATTTGTTCTCTGAC-AATACA
* * * * * *
66411610 GAGATGCCAAATCTGTTTCTTCGATTTG-TTCACTG-ACAATA-CAG
178 GAGATGCCAAATC---ATCTTGGATCTGCTTCAGTGTA-AACACCTG
* * ** * * * ** ** * *
66411654 -A-GACACCAAAT-C-A--TCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCATATCTGCTAT
1 AAGGTCA-GATCTGCTATGTCTTCGATTTGC-TCCTTGTAAACACAAGAATGCCA-A-AT-C-A-
* * * * * * * * * * *
66411713 GTCTTCGATTTGC-TC-CT-TGTAAACA-CAAGAATGCCA-A-AT-C-A--TCTTGGACCTAAT-
59 -TCTTGGATCTGCTTCGATGTGAAAACATCCA-AAGGTCAGATCTGCTATGTCTTCGATCTACTC
* * ** * * * * * * * **
66411767 T-CGATGTGATAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTT-CTCTCCGTCAAATATG
122 TCCG-T-CG--AATATGGAGATGCCAAATCTG-T-T-TCTTCGAT-TTGTTCTCTGAC-AATACA
* * *
66411830 GAGATGCCAAATCATCTTAGAT-TCACTTCAGAGTAAACACCTG
178 GAGATGCCAAATCATCTTGGATCT-GCTTCAGTGTAAACACCTG
* ** * * * * * *
66411873 AAGGTCAGATCTGCTATGTTTTTTATTTGCCCCCTATAAACACAATAAAGCTAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66411938 TCTGCTTCGATGTAAAAACATCCAAAGGTCAGATCTGCTATATCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66412003 TATGGAGATGCCAAATCTGTTTGTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66412068 GGATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * *
66412093 AAGGTCAGATCTGCTATGTCTTCAATTTACTCCTCGTAAACACAAGAATTCTAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66412158 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * *
66412223 TATGGAGATGCCAATTCTGCTTT-TTCGGTTTGTTCTCTGACAATACAGAGATGCCAAATAATCT
131 TATGGAGATGCCAAATCTG-TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
66412287 TGGATCTGCTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * * * *
66412313 AAGGTCAGATCTACTATTTATTCGATTTACTCCTTGTAAACACAAGAATTCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
*
66412378 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTACTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* *
66412443 TATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCAGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66412508 GGATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66412533 AAGGCCAGATCTGCTATGTCTTCGATTTGCTACTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66412598 CCTGCTTCGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCAAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* ** * *
66412663 TATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTGACAATACGGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* *
66412728 AGATCCGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* * * * **
66412753 AAGGTCAAATCTGCTATATCTTCGTTTTGCTCTTTGTAAACACAAGAATGCCAAATCATCTTATA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66412818 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTTTCCATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* *
66412883 TATGAAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
* * *
66412948 GAATCTACTTTAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* *
66412973 AAGGTCAGATCTGTTATGTCTTCAATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66413038 TCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* ** * *
66413103 TATGGGGATAACAAATCTGGTTCTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
*** * ** *
66413168 GGATC-AAATCAGAGTAAACAAATA
196 GGATCTGCTTCAGTGTAAACACCTG
*
66413192 AAGGTCAGATCTGCTATGTCTTCGATTTGCTTCTTGTAAACAC-AGTAATGCCAAATCAT-TTCG
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAG-AATGCCAAATCATCTT-G
* * * *
66413255 GATCTGCTTCGATGT-AAAATCGTCCAAAGGTCAGATCTTCTATGTCTTCGATCTTCTCTCCATC
64 GATCTGCTTCGATGTGAAAA-CATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTC
* *
66413319 AAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCAT
128 GAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCAT
* *
66413384 CTTGGATGTACTTCAGTGTAAACACCTG
193 CTTGGATCTGCTTCAGTGTAAACACCTG
* * *
66413412 AAGGTCAGATCCGCTATGTTTTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
66413477 TCTGCTTCGATGTGAAAACACCCAAAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* * * * **
66413542 TATAGAGACGCCAAATCTGTTTCTTCGATTTGTTCACTAACAATACAGAGACCCCAAATCATCTT
131 TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
66413607 GGATCTGCTTCAGTGTAAACACCTG
196 GGATCTGCTTCAGTGTAAACACCTG
* ** **
66413632 AAGGTCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTATA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
66413697 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATATCTTCGATCTGCTCTCCATTGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
*
66413762 TATGAAGATGCCAAATCTGTTTCTTTC-ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
131 TATGGAGATGCCAAATCTGTTTC-TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66413826 TGGATCTGCTTTAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
* * *
66413852 AAGGTCAGATCTGCTATGTCTTCAATTTGCTCCTAGTAAACACAAGAATGCCAAATCATCTTGAA
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
66413917 TCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTCGATCTGCTCTCCGTCGAA
66 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
* ** * *
66413982 TATGGGGATAACAAATCTAG-TTCTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATCATAT
131 TATGGAGATGCCAAATCT-GTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*** * ** *
66414046 TGGATCAAATTCAGAGTAAACAAATA
195 TGGATCTGCTTCAGTGTAAACACCTG
* * *
66414072 AAGGTCAGATCTGCTATGTCTTCGATTTGCTTCTTGTAAACA-TAGTAATGCCAAATCATTTTGG
1 AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAG-AATGCCAAATCATCTTGG
* * * * * * *
66414136 ATCTGCTTCGATGTGAAATCGTCCAATGGTCAGATTTGCTATGTCTTCGATCTTCTCTCCATCAA
65 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGA
** *
66414201 ATATGGAGATGCCAAATCTGTTTCTTTTATTTTTTCTCTGACAATACAGAGATGCCAAATCATCT
130 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
*
66414266 TGGATCTGTTTCAGTGTAAACACCTG
195 TGGATCTGCTTCAGTGTAAACACCTG
66414292 AAGGTCAGATCTGCTATGTCTTCGAT
1 AAGGTCAGATCTGCTATGTCTTCGAT
66414318 CTGTTCTCCG
Statistics
Matches: 13690, Mismatches: 1745, Indels: 864
0.84 0.11 0.05
Matches are distributed among these distances:
204 2 0.00
205 7 0.00
206 42 0.00
207 17 0.00
208 52 0.00
209 47 0.00
210 158 0.01
211 1 0.00
212 8 0.00
213 6 0.00
214 6 0.00
215 6 0.00
216 16 0.00
217 103 0.01
218 473 0.03
219 1702 0.12
220 10437 0.76
221 130 0.01
222 42 0.00
223 76 0.01
224 53 0.00
225 34 0.00
226 42 0.00
227 27 0.00
228 23 0.00
229 11 0.00
231 2 0.00
233 1 0.00
234 2 0.00
235 8 0.00
236 4 0.00
237 11 0.00
238 6 0.00
241 2 0.00
243 1 0.00
244 5 0.00
245 3 0.00
246 1 0.00
247 4 0.00
248 11 0.00
249 14 0.00
250 18 0.00
251 9 0.00
252 3 0.00
253 19 0.00
254 15 0.00
255 3 0.00
256 6 0.00
257 17 0.00
258 4 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
AAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAA
TATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTT
GGATCTGCTTCAGTGTAAACACCTG
Found at i:66398967 original size:749 final size:749
Alignment explanation
Indices: 66397442--66399011 Score: 2310
Period size: 749 Copynumber: 2.1 Consensus size: 749
66397432 CAATACAGAG
* * * * *
66397442 ATGCCAAATCATCTTGGATCTACTTC-A-GTGTAAACA-CCTGAACGTCAGATTTGCTATGTCTT
1 ATGCCAAATCATCATAGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATTTGCTATGTCTT
* * * *
66397504 CAATTTACTCATTGTAAACACAAGAATTCTAAATCATCTTGGATCTGTTTCAATGTGAAAACATC
65 CGATTTACTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGTTTCAATGTGAAAACAAC
* * * * * *
66397569 CAAAGGTCAGATCTGCTATGTCTTCGATTTTCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
130 CAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAATATAGACATGCCAAATCTGTTT
* *
66397634 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAA
195 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAA
* * *
66397699 CTGAAGGTCAGATCTACTATGTCTTCGATTTACTCATTGTAAACACAAGAATGCCAAATCATGTT
260 CTGAAGGCCAGATCTACTATATCTTCGATTTACTCATTGTAAACACAAGAATGCCAAATCATCTT
*
66397764 GGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCACTCCGTC
325 GAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCACTCCGTC
* * *
66397829 GAATATGGAGATGCCAAATCAGTTTCTTTGATTTGTTCTCTAACAATACAGAGATGCCAACTCAA
390 GAATATGGAGATGACAAATCAGTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCAA
* * * *
66397894 CTTGGATCTGCTTCAGTGTAAACACCTGAAGTCCAGATCTGCTATGTCTTCGATTTGCTCCTTGT
455 CTTGGATCTACTTCAGTGTAAACAACTAAAGTCCAGATCTGCTATGCCTTCGATTTGCTCCTTGT
*
66397959 AAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAAAATATCCAAAGCTCAGATCTG
520 AAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAAAATATCCAAAGCTCAAATCTG
* * * *
66398024 CTACGTCTTCGATCTGCTCTGCATTGAATATGGAGATGCCAAATCTATTTTTTTGATTTGTTCTC
585 CTACGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTC
* * *
66398089 TGATAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAAGTCAGATCT
650 TGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTAAACACCTGAAAGTCAGATCT
* * *
66398154 GATATGTCTTTGATTTTCTGCTTGTAAACACAAGA
715 GATATGTCTTCGATTTGCTCCTTGTAAACACAAGA
** * * * *
66398189 ATGCCAAATCATTTTGGATCTACTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCATAGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATTTGCTATGTCTTC
* * * *
66398254 GATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGTATCTGCTTT-GATGTGAAAACAAC
66 GATTTACTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTG-TTTCAATGTGAAAACAAC
66398318 CAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAATATAGACATGCCAAATCTGTTT
130 CAAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAATATAGACATGCCAAATCTGTTT
* * *
66398383 CTTTGATTTGTTCTCTGACAATACAGAGATGCCATATCATCTTGGATCTACTTCAGTGTAAACAC
195 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAA
* * * *
66398448 CTGAAGGCCAGATCTGCTATATCTTCGATTTGCTCCTTGTAAACACGAGAATGCCAAATCATCTT
260 CTGAAGGCCAGATCTACTATATCTTCGATTTACTCATTGTAAACACAAGAATGCCAAATCATCTT
* *
66398513 GAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTC
325 GAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCACTCCGTC
* *
66398578 GAATATGTG-GATGACAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCA
390 GAATATG-GAGATGACAAATCAGTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCA
* *
66398642 TCTTGGATCTACTTCA-TAGTAAACAACTAAAGGT-CAGATCTGCTATGCCTTCGATTTGCTTCT
454 ACTTGGATCTACTTCAGT-GTAAACAACTAAA-GTCCAGATCTGCTATGCCTTCGATTTGCTCCT
* * * * * * *
66398705 TGTAAACACAATAATGCCAAATCATTTTGGATCTGCTTTGATGTG-AAATCGTCCAAAGGTCAAA
517 TGTAAACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAAAAT-ATCCAAAGCTCAAA
* * *
66398769 TCTGCTATGTCTTTGATCTTCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGT
581 TCTGCTACGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGT
* *
66398834 TCTCTGACAATACAGAGATGGCAAATCATCTTGGATCTACTTCAGCGTAAACACCTGAAGGTCAG
646 TCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTAAACACCTGAAAGTCAG
*
66398899 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGA
711 ATCTGATATGTCTTCGATTTGCTCCTTGTAAACACAAGA
* * * *
66398938 ATGCCAAATCATCATATATCTGCTTCGATGTGAAAACATTCAAAGGTCAGATTTGCTACGTCTTC
1 ATGCCAAATCATCATAGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATTTGCTATGTCTTC
*
66399003 GATCTACTC
66 GATTTACTC
66399012 TTCGTCGAAT
Statistics
Matches: 732, Mismatches: 83, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
747 25 0.03
748 6 0.01
749 693 0.95
750 8 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (749 bp):
ATGCCAAATCATCATAGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATTTGCTATGTCTTC
GATTTACTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGTTTCAATGTGAAAACAACC
AAAGGTCAGACCTGCTATGTCTTCGATCTACCCTCCGTCGAATATAGACATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACAAC
TGAAGGCCAGATCTACTATATCTTCGATTTACTCATTGTAAACACAAGAATGCCAAATCATCTTG
AATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCACTCCGTCG
AATATGGAGATGACAAATCAGTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCAAC
TTGGATCTACTTCAGTGTAAACAACTAAAGTCCAGATCTGCTATGCCTTCGATTTGCTCCTTGTA
AACACAAGAATGCCAAATCATCTTGGACCTACTTCGATGTGAAAATATCCAAAGCTCAAATCTGC
TACGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCT
GACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTAAACACCTGAAAGTCAGATCTG
ATATGTCTTCGATTTGCTCCTTGTAAACACAAGA
Found at i:66399716 original size:44 final size:43
Alignment explanation
Indices: 66399658--66399740 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
66399648 ATCTGCTATG
* * * **
66399658 TCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCACTCTCCGAC-AATACAGAGATGCCAAATCTGTT
*
66399702 TCTTCAATCCACTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCAATCCACTCTCCGACAATACAGAGATGCCAAATC
66399741 ATCTTGGCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (43 bp):
TCTTCAATCCACTCTCCGACAATACAGAGATGCCAAATCTGTT
Found at i:66400537 original size:88 final size:87
Alignment explanation
Indices: 66400391--66400550 Score: 216
Period size: 88 Copynumber: 1.8 Consensus size: 87
66400381 CAATACAGAG
* * *
66400391 ATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCAA
1 ATGCCAAATCATCTTGGATCTGCTTGAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCAA
*
66400456 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* *
66400478 ATGCCAAATCATCTT-GATCTGCTTCGATGTGAAAACATCC-AAAGGTTAGATCTGGTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTT-GA-GTGAAAACA-CCTAAAGGTCAGATCTGCTATGTCTT
*
66400541 CGATCTGCTC
63 CAATCTGCTC
66400551 TTCGTCGAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
86 9 0.14
87 16 0.25
88 36 0.57
89 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTGAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCAA
TCTGCTCCTTGTAAACACAAGA
Found at i:66401932 original size:87 final size:88
Alignment explanation
Indices: 66401830--66401989 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
66401820 CAATACAGAG
* * *
66401830 ATGCCAAATCATCTTGGATCTGCTT-TA-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTT-GATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
*
66401892 CGATTTGCTCCTTGTAAACACAAGA
64 CGATCTGCTCCTTGTAAACACAAGA
* *
66401917 ATGCCAAATCATCTTGATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTCG
1 ATGCCAAATCATCTTGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCG
66401982 ATCTGCTC
66 ATCTGCTC
66401990 TTCGTCGAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
86 9 0.14
87 16 0.25
88 37 0.58
89 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (88 bp):
ATGCCAAATCATCTTGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCG
ATCTGCTCCTTGTAAACACAAGA
Found at i:66403807 original size:87 final size:89
Alignment explanation
Indices: 66403705--66403865 Score: 220
Period size: 89 Copynumber: 1.8 Consensus size: 89
66403695 CAATACAGAG
* * * *
66403705 ATGCCAAATCATCTTGGATCTGCTT-TA-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
*
66403767 CAATTTGCTCCTTGTAAACACAAGA
65 CAATCTGCTCCTTGTAAACACAAGA
* *
66403792 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTC
1 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
*
66403857 GATCTGCTC
66 AATCTGCTC
66403866 TCCGTCGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
AATCTGCTCCTTGTAAACACAAGA
Found at i:66404513 original size:89 final size:87
Alignment explanation
Indices: 66404364--66404524 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
66404354 CAATACAGAG
** * *
66404364 ATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGAATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
*
66404429 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
*
66404451 ATGCCAAATCATCTTGAATCTGCTTCTATGTGAAAACATCC-AAAGGTTAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGAATCTGCTTC-A-GTGAAAACA-CCTAAAGGTCAGATCTGCTATGTCTT
66404515 CGATCTGCTC
63 CGATCTGCTC
66404525 TCCATCGAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 24 0.37
88 1 0.02
89 38 0.58
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (87 bp):
ATGCCAAATCATCTTGAATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:66405568 original size:87 final size:87
Alignment explanation
Indices: 66405464--66405623 Score: 225
Period size: 87 Copynumber: 1.8 Consensus size: 87
66405454 CAATACAGAG
* * *
66405464 ATGCCAAATCATCTTGGATCTGCTTCAATGT-AAACA-CCTGAAGGCCAGATTTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCAATGTAAAACATCC-AAAGGCCAGATCTGCT-TGTCTTC
*
66405527 GATTTGCTCCTTGTAAACACAAGA
64 GATCTGCTCCTTGTAAACACAAGA
* *
66405551 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTTGTCTTCG
1 ATGCCAAATCATCTTGGACCTGCTTCAATGT-AAAACATCCAAAGGCCAGATCTGCTTGTCTTCG
66405616 ATCTGCTC
65 ATCTGCTC
66405624 TCCGTCAAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
87 29 0.45
88 15 0.23
89 18 0.28
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGACCTGCTTCAATGTAAAACATCCAAAGGCCAGATCTGCTTGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:66405689 original size:43 final size:46
Alignment explanation
Indices: 66405601--66405692 Score: 127
Period size: 43 Copynumber: 2.1 Consensus size: 46
66405591 CAAAGGTCAG
* * *
66405601 ATCTGCTTGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAA
1 ATCTGCTTGTCTTCAATCTGCTCTCCGACAAATATAGAGATGCCAA
*
66405647 ATCTG-TT-TCTTCAATCTGCTCTCTGAC-AATATAGAGATGCCAA
1 ATCTGCTTGTCTTCAATCTGCTCTCCGACAAATATAGAGATGCCAA
66405690 ATC
1 ATC
66405693 ATCTTAGATC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 18 0.43
44 17 0.40
45 2 0.05
46 5 0.12
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (46 bp):
ATCTGCTTGTCTTCAATCTGCTCTCCGACAAATATAGAGATGCCAA
Found at i:66406225 original size:87 final size:89
Alignment explanation
Indices: 66406123--66406283 Score: 229
Period size: 89 Copynumber: 1.8 Consensus size: 89
66406113 CATTACAGAG
** * *
66406123 ATGCCAAATCATCTTGGCTCTACTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGAATCTACTTCTATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
*
66406185 CGATTTGCTCCTTGTAAACACAAGA
65 CGATCTGCTCCTTGTAAACACAAGA
* *
66406210 ATGCCAAATCATCTTGAATCTGCTTCTATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGAATCTACTTCTATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
66406275 GATCTGCTC
66 GATCTGCTC
66406284 TCCATCGAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
87 23 0.36
88 1 0.02
89 38 0.59
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGAATCTACTTCTATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:66407325 original size:87 final size:88
Alignment explanation
Indices: 66407221--66407381 Score: 227
Period size: 89 Copynumber: 1.8 Consensus size: 88
66407211 CAATACAGAG
* * *
66407221 ATGCCAAATCATCTTGGATCTGCTTCAATGT-AAACA-CCTGAAGGCCAGATTTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCAATGTAAAACATCC-AAAGGCCAGATCTGCTATGTCTTC
*
66407284 GATTTGCTCCTTGTAAACACAAGA
65 GATCTGCTCCTTGTAAACACAAGA
* * *
66407308 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTGTGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCAATGT-AAAACATCCAAAGGCCAGATCTGCTATGTCTTC
66407373 GATCTGCTC
65 GATCTGCTC
66407382 TCCGTCAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
87 29 0.45
89 33 0.52
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (88 bp):
ATGCCAAATCATCTTGGACCTGCTTCAATGTAAAACATCCAAAGGCCAGATCTGCTATGTCTTCG
ATCTGCTCCTTGTAAACACAAGA
Found at i:66407447 original size:43 final size:44
Alignment explanation
Indices: 66407363--66407450 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
66407353 GTCAGATCTG
* * *
66407363 CTGTGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAAT
1 CTGTGTCTTCAATCTGCTCTCCGACAAATATAGAGATGCCAAAT
* *
66407407 CTGTTTCTTCAATCTGCTCTCTGAC-AATATAGAGATGCCAAAT
1 CTGTGTCTTCAATCTGCTCTCCGACAAATATAGAGATGCCAAAT
66407450 C
1 C
66407451 ATCTTAGATC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 18 0.46
44 21 0.54
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (44 bp):
CTGTGTCTTCAATCTGCTCTCCGACAAATATAGAGATGCCAAAT
Found at i:66410038 original size:136 final size:136
Alignment explanation
Indices: 66409871--66410146 Score: 426
Period size: 136 Copynumber: 2.0 Consensus size: 136
66409861 TGCCAAATCA
* * *
66409871 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTTGATTTTCTCCTTG
1 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAAATCTACTATGTCTTTGATTTGCTCCTTG
*
66409936 TAAACAAAAGAATGGCAAATCATCTTGGACCTACTTCGATGTCAAAACATCCAAAGGTCAGATCT
66 TAAACAAAAGAATGCCAAATCATCTTGGACCTACTTCGATGTCAAAACATCCAAAGGTCAGATCT
66410001 GCTATG
131 GCTATG
*
66410007 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTTTGATTTGCTCCTTG
1 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAAATCTACTATGTCTTTGATTTGCTCCTTG
* * * * * * * *
66410072 TAAACACAAGAATGCCAAATCATTTTGGATCTGCTTCGATGTGAAATCGTCCAAAGGTTAGATCT
66 TAAACAAAAGAATGCCAAATCATCTTGGACCTACTTCGATGTCAAAACATCCAAAGGTCAGATCT
*
66410137 GCTATT
131 GCTATG
66410143 TCTT
1 TCTT
66410147 CGAACTTCTC
Statistics
Matches: 126, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
136 126 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (136 bp):
TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAAATCTACTATGTCTTTGATTTGCTCCTTG
TAAACAAAAGAATGCCAAATCATCTTGGACCTACTTCGATGTCAAAACATCCAAAGGTCAGATCT
GCTATG
Found at i:66410040 original size:47 final size:47
Alignment explanation
Indices: 66409871--66410066 Score: 124
Period size: 47 Copynumber: 4.3 Consensus size: 47
66409861 TGCCAAATCA
*
66409871 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATG
1 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
* * * ** *** *
66409918 TCTTTGATTTTC-TCCTTGTAAACAAAAGAATGG-CA-A-AT-C-A--
1 TCTTGGATCTGCTTCAGTGTAAACACCTGAA-GGTCAGATCTGCTATG
* * *
66409958 TCTTGGACCTACTTC-GATGTCAAAACATCC-AAAGGTCAGATCTGCTATG
1 TCTTGGATCTGCTTCAG-TGT--AAACA-CCTGAAGGTCAGATCTGCTATG
* *
66410007 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATG
1 TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
* *
66410054 TCTTTGATTTGCT
1 TCTTGGATCTGCT
66410067 CCTTGTAAAC
Statistics
Matches: 109, Mismatches: 25, Indels: 30
0.66 0.15 0.18
Matches are distributed among these distances:
40 8 0.07
41 5 0.05
42 3 0.03
43 10 0.09
44 2 0.02
45 2 0.02
46 18 0.17
47 44 0.40
49 16 0.15
50 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (47 bp):
TCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATG
Found at i:66411960 original size:177 final size:177
Alignment explanation
Indices: 66411659--66412019 Score: 517
Period size: 177 Copynumber: 2.0 Consensus size: 177
66411649 TACAGAGACA
* * *
66411659 CCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCATATCTGCTATGTCTTCGATTT
1 CCAAATCATCTTAGATCTACTTCAGAGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGATTT
* * * * * *
66411724 GCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTAATTCGATGTGATAACATCCAAAGG
66 GCCCCCTATAAACACAAGAAAGCCAAATCATCTTGGACCTAATTCGATGTAAAAACATCCAAAGG
* *
66411789 TCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAATATGGAGATG
131 TCAGATCTGCTATATCTTCGATCTGCTCTCCGTCAAATATGGAGATG
* * **
66411836 CCAAATCATCTTAGAT-TCACTTCAGAGTAAACACCTGAAGGTCAGATCTGCTATGTTTTTTATT
1 CCAAATCATCTTAGATCT-ACTTCAGAGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGATT
* * * **
66411900 TGCCCCCTATAAACACAATAAAGCTAAATCATCTTGGATCTGCTTCGATGTAAAAACATCCAAAG
65 TGCCCCCTATAAACACAAGAAAGCCAAATCATCTTGGACCTAATTCGATGTAAAAACATCCAAAG
*
66411965 GTCAGATCTGCTATATCTTCGATCTGCTCTCCGTCGAATATGGAGATG
130 GTCAGATCTGCTATATCTTCGATCTGCTCTCCGTCAAATATGGAGATG
66412013 CCAAATC
1 CCAAATC
66412020 TGTTTGTTCG
Statistics
Matches: 162, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
176 1 0.01
177 161 0.99
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (177 bp):
CCAAATCATCTTAGATCTACTTCAGAGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGATTT
GCCCCCTATAAACACAAGAAAGCCAAATCATCTTGGACCTAATTCGATGTAAAAACATCCAAAGG
TCAGATCTGCTATATCTTCGATCTGCTCTCCGTCAAATATGGAGATG
Found at i:66413080 original size:89 final size:87
Alignment explanation
Indices: 66412933--66413093 Score: 207
Period size: 89 Copynumber: 1.8 Consensus size: 87
66412923 CAATACAGAG
* * * *
66412933 ATGCCAAATCATCTTGAATCTACTTTAGTGTAAACACCTGAAGGTCAGATCTGTTATGTCTTCAA
1 ATGCCAAATCATCTTGAATCTACTTGAGTGAAAACACCTAAAGGTCAGATCTGGTATGTCTTCAA
*
66412998 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* * *
66413020 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGGTTAGATCTGGTATGTCTT
1 ATGCCAAATCATCTTGAATCTACTT-GA-GTGAAAACA-CCTAAAGGTCAGATCTGGTATGTCTT
*
66413084 CGATCTGCTC
63 CAATCTGCTC
66413094 TCCGTCGAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 23 0.37
88 1 0.02
89 36 0.58
90 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATCTTGAATCTACTTGAGTGAAAACACCTAAAGGTCAGATCTGGTATGTCTTCAA
TCTGCTCCTTGTAAACACAAGA
Found at i:66413910 original size:87 final size:89
Alignment explanation
Indices: 66413812--66413972 Score: 220
Period size: 89 Copynumber: 1.8 Consensus size: 89
66413802 CAATACAGAG
* * * *
66413812 ATGCCAAATCATCTTGGATCTGCTT-TA-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
*
66413874 CAATTTGCTCCTAGTAAACACAAGA
65 CAATCTGCTCCTAGTAAACACAAGA
* *
66413899 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTC
1 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
*
66413964 GATCTGCTC
66 AATCTGCTC
66413973 TCCGTCGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
AATCTGCTCCTAGTAAACACAAGA
Found at i:66414569 original size:561 final size:567
Alignment explanation
Indices: 66413679--66414871 Score: 1593
Period size: 561 Copynumber: 2.1 Consensus size: 567
66413669 AAACACAAGA
* * * *
66413679 ATGCCAAATCATCTTATATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATATCTT
1 ATGCCAAATCATCTTAGATCTGCTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
* * *
66413743 CGATCTGCTCTCCATTGAATATGAAGATGCCAAATCTGTTTCTTTCATTTGTTCTCTGACAATAC
63 CGATCTGCTCTCCATCGAATATGAAGATGCCAAATCTATTTCATTCATTTG-T-TCT-AC-ATAC
* * * * *
66413808 AGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
124 AGAGATGCAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCAATGTCT
* * *
66413873 TCAATTTGCTCCTAGTAAACACAAGAATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACAT
189 TCAACTTGCTCCTAGTAAACACAAGAATGACAAATCATCTTGAATCTGCTTCAATGTGAAAACAT
* ** * *
66413938 CCAAAGGTTAGATCTGGTATGTCTTCGATCTGCTCTCCGTCGAATATGGGGATAACAAATCTAGT
254 CCAAAGGTCAGATCTACTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATAACAAATCTAGT
* ***
66414003 TCTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATCATATTGGATCAAATTCAGAGTAAACA
319 TCTTCGATTTGTTCACTGACAATACAGAGACACCAAATCATATTGGATCAAATTCAGAGTAAACA
* * * * *
66414068 AATAAAGGTCAGATCTGCTATGTCTTCGATTTGCTTCTTGTAAACA-TAGTAATGCCAAATCATT
384 AATAAAGGCCAGATCTGCTATGCCTTCGATTTGCTCCTTGTAAACACAAG-AATGCCAAATCATC
* * * *
66414132 TTGGATCTGCTTCGATGTGA-AATCGTCCAATGGTCAGATTTGCTATGTCTTCGATCTTCTCTCC
448 TTGGACCTGCTTCGATGTGATAAT-ATCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCC
** ****
66414196 ATCAAATATGGAGATGCCAAATCTGTTTCTTTTATTTTTTCTCTGACAATACAGAG
512 ATCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACAGAG
* *
66414252 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
* * * *
66414317 TCTGTTCTCCGTCGAATATGGAGATGCCAAATCTATTT-ATTCAATTTG-T-T-C-T-CAGATAT
66 TCTGCTCTCCATCGAATATGAAGATGCCAAATCTATTTCATTC-ATTTGTTCTACATACAGAGAT
* *
66414376 GTAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCAATGTCTTCGACT
130 GCAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCAATGTCTTCAACT
* *
66414441 TGCTCCTTGTAAACAGC-AGAAT-ACAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAA
195 TGCTCCTAGTAAACA-CAAGAATGACAAATCATCTTGAATCTGCTTCAATGTGAAAACATCCAAA
* **
66414504 GGTCATATCTACTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCT-GTTTCTT
259 GGTCAGATCTACTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATAACAAATCTAG-TTCTT
* *** * ** *
66414568 CGATTTGTTCACTGACAATACAGAGACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTG
323 CGATTTGTTCACTGACAATACAGAGACACCAAATCATATTGGATCAAATTCAGAGTAAACAAATA
*
66414633 AAGGCCATATCTGCTATGCCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
388 AAGGCCAGATCTGCTATGCCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
*
66414698 CCTGCTTCGATGTGATAATATCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCGTCAAA
453 CCTGCTTCGATGTGATAATATCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCATCAAA
66414763 TATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACAGAG
518 TATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACAGAG
* * *
66414813 ATGCCAAATCATCTTAGAT-TCACTTCAGAGTAAACACCTGAAGGTCAGATTTGCTATGT
1 ATGCCAAATCATCTTAGATCT-GCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGT
66414872 TTTTTATTTG
Statistics
Matches: 546, Mismatches: 67, Indels: 26
0.85 0.10 0.04
Matches are distributed among these distances:
560 2 0.00
561 353 0.65
562 87 0.16
563 2 0.00
565 1 0.00
567 1 0.00
568 1 0.00
570 5 0.01
571 70 0.13
572 1 0.00
573 23 0.04
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (567 bp):
ATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
TCTGCTCTCCATCGAATATGAAGATGCCAAATCTATTTCATTCATTTGTTCTACATACAGAGATG
CAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCAATGTCTTCAACTT
GCTCCTAGTAAACACAAGAATGACAAATCATCTTGAATCTGCTTCAATGTGAAAACATCCAAAGG
TCAGATCTACTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATAACAAATCTAGTTCTTCGA
TTTGTTCACTGACAATACAGAGACACCAAATCATATTGGATCAAATTCAGAGTAAACAAATAAAG
GCCAGATCTGCTATGCCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCT
GCTTCGATGTGATAATATCCAAAGGTCAGATCTGCTATGTCTTCGATCTTCTCTCCATCAAATAT
GGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACAGAG
Found at i:66414585 original size:341 final size:347
Alignment explanation
Indices: 66413899--66414664 Score: 963
Period size: 341 Copynumber: 2.2 Consensus size: 347
66413889 AAACACAAGA
* * * * *
66413899 ATGCCAAATCATCTTGAATCTGCTTCGATGTGAAAACATCC-AAAGGTTAGATCTGGTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
* * *
66413963 CGATCTGCTCTCCGTCGAATATGGGGATAACAAATCTAGTTCTTCGATTTGTTCTCTGACAATAC
63 CGATCTGCTCTCCGTCGAATATGGAGATAACAAATCTAGTTATTCAATTTG-T-TCT-AC-ATAC
* * *
66414028 AGAGATGTCAAATCATATTGGATCAAATTCAGAGTAAACAAATAAAGGTCAGATCTGCTATGTCT
124 AGAGATGTAAAATCATATTAGATCAAATTCAGAGTAAACAAATAAAGGTCAGATCTGCAATGTCT
* * * * * * * *
66414093 TCGATTTGCTTCTTGTAAACATAGTAATGCCAAATCATTTTGGATCTGCTTCGATGTGAAATCGT
189 TCGACTTGCTCCTTGTAAACACAGTAATGACAAATCATCTTGGATCTGCTTCAATGTGAAAACAT
* * * *
66414158 CCAATGGTCAGATTTGCTATGTCTTCGATCTTCTCTCCATCAAATATGGAGATGCCAAATCTGTT
254 CCAAAGGTCAGATCTACTATGTCTTCGATCTACTCTCCATCAAATATGGAGATGCCAAATCTGTT
** * *
66414223 TCTTTTATTTTTTCTCTGACAATACAGAG
319 TCTTCGATTTGTTCACTGACAATACAGAG
*
66414252 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
* ** * *
66414317 TCTGTTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTG-T-T-C-T-CAGATATG
66 TCTGCTCTCCGTCGAATATGGAGATAACAAATCTAGTTATTCAATTTGTTCTACATACAGAGATG
* *** * **
66414377 TAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCAATGTCTTCGACTT
131 TAAAATCATATTAGATCAAATTCAGAGTAAACAAATAAAGGTCAGATCTGCAATGTCTTCGACTT
66414442 GCTCCTTGTAAACAGCAG-AAT-ACAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAG
196 GCTCCTTGTAAACA-CAGTAATGACAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAG
* * *
66414505 GTCATATCTACTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCG
260 GTCAGATCTACTATGTCTTCGATCTACTCTCCATCAAATATGGAGATGCCAAATCTGTTTCTTCG
66414570 ATTTGTTCACTGACAATACAGAG
325 ATTTGTTCACTGACAATACAGAG
** * * *
66414593 ACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCATATCTGCTATGCCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
*
66414658 TTTGCTC
66 TCTGCTC
66414665 CTTGTAAACA
Statistics
Matches: 360, Mismatches: 51, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
341 178 0.49
342 77 0.21
343 3 0.01
345 1 0.00
347 1 0.00
348 1 0.00
350 2 0.01
351 72 0.20
352 1 0.00
353 24 0.07
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (347 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
TCTGCTCTCCGTCGAATATGGAGATAACAAATCTAGTTATTCAATTTGTTCTACATACAGAGATG
TAAAATCATATTAGATCAAATTCAGAGTAAACAAATAAAGGTCAGATCTGCAATGTCTTCGACTT
GCTCCTTGTAAACACAGTAATGACAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAGG
TCAGATCTACTATGTCTTCGATCTACTCTCCATCAAATATGGAGATGCCAAATCTGTTTCTTCGA
TTTGTTCACTGACAATACAGAG
Found at i:66414757 original size:220 final size:220
Alignment explanation
Indices: 66414252--66416608 Score: 3341
Period size: 220 Copynumber: 10.8 Consensus size: 220
66414242 CAATACAGAG
* * *
66414252 ATGCCAAATCATCTTGGATCTGTTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
* * * *
66414314 CGATCTGTTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTG---T-T--C--T-C
65 CGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATAC
* ** * * *
66414370 AGATATGTAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCAATGTCT
130 AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
*
66414435 TCGACTTGCTCCTTGTAAACAGC-AGA
195 TCGATTTGCTCCTTGTAAACA-CAAGA
* * * *
66414461 AT-ACAAATCATCTTGGATCTGCTTCAATGTGAAAACATCCAAAGGTCATATCTACTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* *
66414525 GATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCACTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
** * * *
66414590 GAGACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCATATCTGCTATGCCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
66414655 CGATTTGCTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * *
66414680 ATGCCAAATCATCTTGGACCTGCTTCGATGTGATAATATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * ****
66414745 GATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * * * *
66414810 GAGATGCCAAATCATCTTAGAT-TCACTTCAGAGTAAACACCTGAAGGTCAGATTTGCTATGTTT
131 GAGATGCCAAATCATCTTGGATCT-GCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
** * *
66414874 TTTATTTGCCCCCTGTAAACACAAGA
195 TCGATTTGCTCCTTGTAAACACAAGA
* * * *
66414900 AAGCCAAATCATCTTGGATCTGCTTCGATGTAAAAACATCCAAAGGTCAGATCTGCTATATCATC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
*
66414965 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATATA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
66415030 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * *
66415095 CAATTTACTCCTCGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * * * *
66415120 ATTCTATATCATCTTGGATCTGCTTCGATGTGAAAATATCCAAAGGTCAGATCTGCTATGTCTTT
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * *
66415185 GATCTGCTCTCCGTCTAATATGGAGATGCCAATTCTGTTTTTTCGATTTATTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * *
66415250 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTACTATTTATT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* *
66415315 CAATTTACTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * *
66415340 ATTCCAAATCATCTTGGATCTTCTTTGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * *
66415405 AATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTACTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
*
66415470 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
66415535 CGATTTGCTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
*
66415560 ATGCCAAATCATCTTGGA-CGTGCTTCGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATC-TGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTT
* * ** *
66415624 CGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTGACAATAC
65 CGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATAC
* * * *
66415689 AGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGTTATGTCT
130 AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
*
66415754 TCAATTTGCTCCTTGTAAACACAAGA
195 TCGATTTGCTCCTTGTAAACACAAGA
* * * *
66415780 ATGCCAAATCATCTTGAATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGGTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* ** * *
66415845 GATCTGCTCTCCGTCGAATATGGGGATAACAAATCTGGTTCTTCGATTTGTTCTCTAACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *** * ** *
66415910 GAGATGTCAAATCATCTTGGATC-AAATCAGAGTAAACAAATAAAGGTCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
66415974 CGATTTGCTTCTTGTAAACAC-AGTA
196 CGATTTGCTCCTTGTAAACACAAG-A
* *
66415999 ATGCAAAATCAT-TTCGGATCTGCTTCGATGT-AAAATCGTCCAAAGGTCAGATCTGCTATGTCT
1 ATGCCAAATCATCTT-GGATCTGCTTCGATGTGAAAA-CATCCAAAGGTCAGATCTGCTATGTCT
* * * * *
66416062 TTGATCTTCTCTCCATCAAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATA
64 TCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATA
* *
66416127 CAGAGATGCTAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTC
129 CAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTC
66416192 TTCGATTTGCTCCTTGTAAACACAAGA
194 TTCGATTTGCTCCTTGTAAACACAAGA
*
66416219 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTACGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* *
66416284 GATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCACTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
** * *
66416349 GAGACACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAAATCTACTATGTCTT
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
66416414 CGATTTGCTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
** *
66416439 ATGCCAAATCATCTTATATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATATCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * * * *
66416504 GATCTGCTCTCCATTGAATATGAAGATGCCAAATCTATTTTTTTGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *
66416569 GAGATGCCAAATCATCTTAGATCTGCTTTAGTGTAAACAC
131 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAC
66416609 TTTAAATGCA
Statistics
Matches: 1903, Mismatches: 220, Indels: 39
0.88 0.10 0.02
Matches are distributed among these distances:
208 21 0.01
209 3 0.00
210 74 0.04
211 2 0.00
214 1 0.00
216 1 0.00
218 10 0.01
219 261 0.14
220 1520 0.80
221 10 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (220 bp):
ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
CGATTTGCTCCTTGTAAACACAAGA
Found at i:66415633 original size:89 final size:87
Alignment explanation
Indices: 66415473--66415633 Score: 227
Period size: 89 Copynumber: 1.8 Consensus size: 87
66415463 CAATACAGAG
* * *
66415473 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTAAAGGCCAAATCTGCTATGTCTTCGA
*
66415538 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
*
66415560 ATGCCAAATCATCTTGGA-CGTGCTTCGATGTGAAAACATCC-AAAGGTCAAATCTGCTATGTCT
1 ATGCCAAATCATCTTGGATC-TGCTTC-A-GTGAAAACA-CCTAAAGGCCAAATCTGCTATGTCT
66415623 TCGATCTGCTC
62 TCGATCTGCTC
66415634 TCCGTCAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
86 1 0.02
87 24 0.37
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTAAAGGCCAAATCTGCTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:66415678 original size:44 final size:43
Alignment explanation
Indices: 66415620--66415702 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
66415610 ATCTGCTATG
* * * **
66415620 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCGCTCTCCGAC-AATACAGAGATGCCAAATCTGTT
*
66415664 TCTTCAATCCGCTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCAATCCGCTCTCCGACAATACAGAGATGCCAAATC
66415703 ATCTTAGATC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
TCTTCAATCCGCTCTCCGACAATACAGAGATGCCAAATCTGTT
Found at i:66418680 original size:40 final size:40
Alignment explanation
Indices: 66418648--66418996 Score: 547
Period size: 40 Copynumber: 8.8 Consensus size: 40
66418638 CCAGCATGAT
* * * *
66418648 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
66418688 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
66418728 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66418768 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
66418808 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
66418848 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
66418888 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66418928 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66418968 TGCTCTTCGGGACTTAGCCCGGAT-CATCA
1 TGCTCTTCGGGACTTAGCCCGGATACATCA
66418997 TCGAGACCTT
Statistics
Matches: 289, Mismatches: 20, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
39 5 0.02
40 284 0.98
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:66419097 original size:38 final size:38
Alignment explanation
Indices: 66419049--66419160 Score: 181
Period size: 38 Copynumber: 2.9 Consensus size: 38
66419039 GAATTTTAAT
66419049 CGGACATAATCTCTGTACATAGCCATCGGGTCTTTACC
1 CGGACATAATCTCTGTACATAGCCATCGGGTCTTTACC
66419087 CGGACATAATCTCTGTACATAGCCATCGGGTCTTTACC
1 CGGACATAATCTCTGTACATAGCCATCGGGTCTTTACC
* * *
66419125 CGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTA
66419161 AACTCGGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 1 0.01
38 69 0.99
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (38 bp):
CGGACATAATCTCTGTACATAGCCATCGGGTCTTTACC
Found at i:66421793 original size:49 final size:47
Alignment explanation
Indices: 66421572--66421992 Score: 655
Period size: 47 Copynumber: 8.8 Consensus size: 47
66421562 CCCTTCGGGA
* * * * * *
66421572 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
66421620 CTGA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66421666 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66421713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66421760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66421809 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66421856 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66421905 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66421954 CTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC
66421993 TGTAACACCC
Statistics
Matches: 349, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
46 4 0.01
47 204 0.58
48 3 0.01
49 138 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66421812 original size:96 final size:96
Alignment explanation
Indices: 66421572--66421992 Score: 658
Period size: 96 Copynumber: 4.4 Consensus size: 96
66421562 CCCTTCGGGA
* * * * * *
66421572 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGA-CACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTTATCACATATATA
66421634 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
66421666 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66421729 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66421760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66421825 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
66421856 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
66421921 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
66421954 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGC
66421993 TGTAACACCC
Statistics
Matches: 304, Mismatches: 16, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
93 5 0.02
94 87 0.29
96 167 0.55
98 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66423372 original size:27 final size:27
Alignment explanation
Indices: 66423342--66423519 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66423332 ATATTAAGTC
* * *
66423342 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
66423369 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
66423397 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
66423424 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
66423451 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
66423478 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
66423505 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66423520 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:66423426 original size:55 final size:54
Alignment explanation
Indices: 66423342--66423519 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
66423332 ATATTAAGTC
* * *
66423342 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
66423397 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
66423451 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
66423505 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66423520 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:66423508 original size:81 final size:82
Alignment explanation
Indices: 66423363--66423518 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
66423353 TGCTATATAA
* *
66423363 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
66423428 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
66423445 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
66423508 ACACTTAGTGC
65 ACACTTAGTGC
66423519 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Done.