Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 194 of 311
Found at i:66659278 original size:24 final size:24
Alignment explanation
Indices: 66659242--66659315 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
66659232 GAGCCAACAT
*
66659242 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * * *
66659266 TGGCACTATGTGTGCGAAATCGAT
1 TGGCACTATGTGTGCGGATTTGAA
*
66659290 TGGCACTATGTATGCTGG-TTTGAA
1 TGGCACTATGTGTGC-GGATTTGAA
66659314 TG
1 TG
66659316 TCAATAAATG
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
24 38 0.97
25 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:66678657 original size:21 final size:21
Alignment explanation
Indices: 66678631--66678674 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
66678621 ACCCTCGAAA
*
66678631 GATTGAGGCAATTCTGGAATG
1 GATTGAGGCAATTCTAGAATG
66678652 GATTGAGGCAATTCTAGAATG
1 GATTGAGGCAATTCTAGAATG
66678673 GA
1 GA
66678675 AGTCACCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (21 bp):
GATTGAGGCAATTCTAGAATG
Found at i:66682579 original size:11 final size:10
Alignment explanation
Indices: 66682547--66682592 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
66682537 CATGAGATTT
66682547 TGATAT-ACA
1 TGATATGACA
*
66682556 TGATTTGACA
1 TGATATGACA
66682566 TGATATGCACA
1 TGATATG-ACA
*
66682577 TGATATG-TA
1 TGATATGACA
66682586 TGATATG
1 TGATATG
66682593 CGCATGAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 13 0.41
10 9 0.28
11 10 0.31
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:66685251 original size:31 final size:31
Alignment explanation
Indices: 66685216--66685278 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
66685206 AAGCAAACAT
66685216 AAAACATCATTTGCATAATCATCACCAAGAC
1 AAAACATCATTTGCATAATCATCACCAAGAC
66685247 AAAACATCATTTGCATAATCATCACCAAGAC
1 AAAACATCATTTGCATAATCATCACCAAGAC
66685278 A
1 A
66685279 TTCATATCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.25, G:0.06, T:0.22
Consensus pattern (31 bp):
AAAACATCATTTGCATAATCATCACCAAGAC
Found at i:66685691 original size:93 final size:93
Alignment explanation
Indices: 66685532--66685703 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
66685522 GCCCATAAGT
* * *
66685532 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
66685597 CGAGTTTGGATGCCTAGTTACTTCTCAC
66 CGAGTTCGGATGCCTAGTTACTTCTCAC
* * * *
66685625 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCTTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66685690 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
66685704 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACTTCTCAC
Found at i:66685699 original size:46 final size:45
Alignment explanation
Indices: 66685527--66685699 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 45
66685517 AACCCGCCCA
* * * * *
66685527 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
* * * * *
66685572 ATGAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTAC-TTC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCC
* *
66685621 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
66685665 TTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66685700 TGCCCAAATA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
44 3 0.03
45 2 0.02
46 58 0.57
47 28 0.27
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
Found at i:66685718 original size:46 final size:46
Alignment explanation
Indices: 66685575--66685718 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
66685565 CGCATCCATG
* * * *
66685575 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACTTCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTA--TCCC
* * *
66685623 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCTTA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC--C
*
66685668 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCC
66685714 AGTGA
1 AGTGA
66685719 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
43 5 0.06
45 2 0.03
46 34 0.44
47 28 0.36
48 5 0.06
50 3 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCC
Found at i:66696950 original size:10 final size:10
Alignment explanation
Indices: 66696935--66696959 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
66696925 CGATCACACG
66696935 GGCGTGTCTA
1 GGCGTGTCTA
66696945 GGCGTGTCTA
1 GGCGTGTCTA
66696955 GGCGT
1 GGCGT
66696960 ATGTAAGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.44, T:0.28
Consensus pattern (10 bp):
GGCGTGTCTA
Found at i:66701695 original size:31 final size:31
Alignment explanation
Indices: 66701619--66701692 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
66701609 TCAAGTTATC
66701619 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATTTAGAA
*
66701651 TCAAA-ACTAAAATAAATAATAAAAA-TTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATTTAGAA
66701681 TTAAATATAAAA
1 TTAAATATAAAA
66701693 ATATCAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 10 0.27
31 15 0.41
32 12 0.32
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATTTAGAA
Found at i:66704342 original size:46 final size:46
Alignment explanation
Indices: 66704291--66704419 Score: 165
Period size: 46 Copynumber: 2.8 Consensus size: 46
66704281 ATGGTTGAGC
*
66704291 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCAACAGG
* * *
66704338 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG
66704383 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
66704420 GGGTGGGTTA
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
43 6 0.08
45 4 0.06
46 29 0.41
47 29 0.41
48 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAACAGG
Found at i:66704679 original size:19 final size:20
Alignment explanation
Indices: 66704642--66704679 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66704632 ATAAGGTGGT
66704642 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66704662 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66704680 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66712087 original size:19 final size:20
Alignment explanation
Indices: 66712050--66712087 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66712040 ATAAGGTGGT
66712050 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66712070 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66712088 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66715965 original size:16 final size:18
Alignment explanation
Indices: 66715944--66715976 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
66715934 CATACTAGCT
66715944 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
66715960 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
66715977 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:66716611 original size:45 final size:45
Alignment explanation
Indices: 66716506--66716767 Score: 361
Period size: 45 Copynumber: 5.9 Consensus size: 45
66716496 CCGAATTCAT
* * * *
66716506 TCACCGGTATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
66716548 TCACTGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
66716593 TCACTGGTATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
66716638 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
66716683 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
66716728 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
66716768 TTACTGTACG
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
42 8 0.04
43 17 0.09
44 5 0.03
45 167 0.84
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:66717629 original size:47 final size:47
Alignment explanation
Indices: 66717573--66717711 Score: 251
Period size: 47 Copynumber: 3.0 Consensus size: 47
66717563 AAAATTTTAT
* * *
66717573 TTAACTAAGTAACTTATCCGGAAATAATAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
66717620 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
66717667 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAA
1 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAA
66717712 ACTTTAAATT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.27
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
Found at i:66718712 original size:6 final size:6
Alignment explanation
Indices: 66718703--66718733 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
66718693 TTTCAAAACC
*
66718703 AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
66718734 TCGTATGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:66718996 original size:20 final size:20
Alignment explanation
Indices: 66718972--66719020 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
66718962 TTTGTATTTC
66718972 ATTTTTATTT-GTTATCAAT
1 ATTTTTATTTAGTTATCAAT
* *
66718991 GTTTTTATTTATTTATCAAT
1 ATTTTTATTTAGTTATCAAT
66719011 ATTTTT-TTTA
1 ATTTTTATTTA
66719021 AATCTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTTTATTTAGTTATCAAT
Found at i:66719456 original size:15 final size:15
Alignment explanation
Indices: 66719433--66719483 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
66719423 CTACCCATGG
*
66719433 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
66719448 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
66719463 TCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
66719477 CCTTAAA
1 CCATAAA
66719484 TATTAATCCC
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:66719627 original size:18 final size:18
Alignment explanation
Indices: 66719604--66719638 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66719594 CCATATGATG
*
66719604 TTTTTTGGGGTTTAGGGT
1 TTTTTTAGGGTTTAGGGT
*
66719622 TTTTTTAGGTTTTAGGG
1 TTTTTTAGGGTTTAGGG
66719639 GTTTAGGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57
Consensus pattern (18 bp):
TTTTTTAGGGTTTAGGGT
Found at i:66719650 original size:16 final size:15
Alignment explanation
Indices: 66719625--66719657 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
66719615 TTAGGGTTTT
66719625 TTTAGGTTTTAGGGG
1 TTTAGGTTTTAGGGG
66719640 TTTAGGGTTTTAGGGG
1 TTTA-GGTTTTAGGGG
66719656 TT
1 TT
66719658 ATATAGACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.48
Consensus pattern (15 bp):
TTTAGGTTTTAGGGG
Found at i:66719856 original size:40 final size:40
Alignment explanation
Indices: 66719714--66719858 Score: 175
Period size: 41 Copynumber: 3.6 Consensus size: 40
66719704 GTTATATGAC
* *
66719714 TTTTAGTGGCGTTTTACCAAAAATGTCA-CTATTGCTCTGT
1 TTTTAGCGGCGCTTTACCAAAAATG-CAGCTATTGCTCTGT
* * * *
66719754 TTCTTAGCGGCGCTTTCCCAAAAAGGCCGCTATCGCTCTGTT
1 TT-TTAGCGGCGCTTTACCAAAAATGCAGCTATTGCTCTG-T
* *
66719796 TTTTAGCAGCGCTTTGCCAAAAATGCAGCTATTGCTCTGT
1 TTTTAGCGGCGCTTTACCAAAAATGCAGCTATTGCTCTGT
*
66719836 TTTTAGCGGCGTTTTACCAAAAA
1 TTTTAGCGGCGCTTTACCAAAAA
66719859 CGCCGCTAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 24 0.27
41 61 0.69
42 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGCTTTACCAAAAATGCAGCTATTGCTCTGT
Found at i:66723296 original size:21 final size:20
Alignment explanation
Indices: 66723262--66723302 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
66723252 TTTATGAGAA
66723262 CTATGATTATATATA-ATGG
1 CTATGATTATATATACATGG
66723281 CTATGATTAAATATATACATGG
1 CTATGATT--ATATATACATGG
66723303 TTTTTGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (20 bp):
CTATGATTATATATACATGG
Found at i:66728658 original size:30 final size:30
Alignment explanation
Indices: 66728622--66728714 Score: 159
Period size: 30 Copynumber: 3.1 Consensus size: 30
66728612 ACGGGCAGAG
66728622 ACACGGGCATGTGTCTCAGTTATGTGTGAC
1 ACACGGGCATGTGTCTCAGTTATGTGTGAC
* *
66728652 ACACGGGCGTGTGTCCCAGTTATGTGTGAC
1 ACACGGGCATGTGTCTCAGTTATGTGTGAC
*
66728682 ACACGGGCATGTGTCTCAGTTGTGTGTGAC
1 ACACGGGCATGTGTCTCAGTTATGTGTGAC
66728712 ACA
1 ACA
66728715 TAATCAAGTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (30 bp):
ACACGGGCATGTGTCTCAGTTATGTGTGAC
Found at i:66728997 original size:13 final size:13
Alignment explanation
Indices: 66728979--66729003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66728969 ATGTCTACAC
66728979 GGATTGGTCACAT
1 GGATTGGTCACAT
66728992 GGATTGGTCACA
1 GGATTGGTCACA
66729004 CGAGCATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (13 bp):
GGATTGGTCACAT
Found at i:66735804 original size:26 final size:27
Alignment explanation
Indices: 66735750--66735804 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
66735740 GTACATAGTA
* * *
66735750 CCTGCTAAATAAAACATCAGCATAGAG
1 CCTGCTAAATAAAACACCAGCACAAAG
*
66735777 CCTGCT-AATATAACACCAGCACAAAG
1 CCTGCTAAATAAAACACCAGCACAAAG
66735803 CC
1 CC
66735805 GACTACGCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.42, C:0.29, G:0.13, T:0.16
Consensus pattern (27 bp):
CCTGCTAAATAAAACACCAGCACAAAG
Found at i:66742971 original size:20 final size:20
Alignment explanation
Indices: 66742948--66742998 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
66742938 AATTAAAAAT
*
66742948 ATTTTTAAAAAAAATTATAA
1 ATTTTTAAAAAAAATAATAA
* **
66742968 ATTTGT-AAATCAATAATAA
1 ATTTTTAAAAAAAATAATAA
66742987 ATTTTATAAAAA
1 ATTTT-TAAAAA
66742999 TATTAAATAA
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
19 14 0.61
20 6 0.26
21 3 0.13
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
ATTTTTAAAAAAAATAATAA
Found at i:66743666 original size:11 final size:11
Alignment explanation
Indices: 66743650--66743688 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
66743640 AAAAAAACTA
66743650 TTGTTTTGTTG
1 TTGTTTTGTTG
*
66743661 TTGTTTT-TTCA
1 TTGTTTTGTT-G
66743672 TTGTTTTGTTG
1 TTGTTTTGTTG
66743683 TTGTTT
1 TTGTTT
66743689 CCTACTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 2 0.08
11 20 0.83
12 2 0.08
ACGTcount: A:0.03, C:0.03, G:0.21, T:0.74
Consensus pattern (11 bp):
TTGTTTTGTTG
Found at i:66744454 original size:28 final size:28
Alignment explanation
Indices: 66744414--66744467 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
66744404 ATCTTAATCT
66744414 TAAAATTTATTTTTATTTATTTATTTAA
1 TAAAATTTATTTTTATTTATTTATTTAA
*
66744442 TAAAATATT-TTTTTATTTTTTTATTT
1 TAAAAT-TTATTTTTATTTATTTATTT
66744468 TTTATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (28 bp):
TAAAATTTATTTTTATTTATTTATTTAA
Found at i:66746333 original size:26 final size:28
Alignment explanation
Indices: 66746287--66746351 Score: 64
Period size: 28 Copynumber: 2.3 Consensus size: 28
66746277 GGAATTTTTA
66746287 TTTATATTTTAAAAA-TCTTT-TTTATTT
1 TTTA-ATTTTAAAAATTCTTTATTTATTT
*
66746314 TTTAATTTTAAATAGTT-TTTATTTATTT
1 TTTAATTTTAAA-AATTCTTTATTTATTT
*
66746342 TCATAATTTT
1 T-TTAATTTT
66746352 TATTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 8 0.25
27 8 0.25
28 9 0.28
29 7 0.22
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (28 bp):
TTTAATTTTAAAAATTCTTTATTTATTT
Found at i:66746359 original size:27 final size:27
Alignment explanation
Indices: 66746329--66746393 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
66746319 TTTTAAATAG
66746329 TTTT-TATTTATTTTCATAA-TTTTTATT
1 TTTTATATTTATTTT-A-AATTTTTTATT
* *
66746356 TTTTAAATATATTTTAAATTTTTTATT
1 TTTTATATTTATTTTAAATTTTTTATT
66746383 TTTTATATTTA
1 TTTTATATTTA
66746394 AAATATGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.06
27 22 0.69
28 8 0.25
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (27 bp):
TTTTATATTTATTTTAAATTTTTTATT
Found at i:66746369 original size:19 final size:18
Alignment explanation
Indices: 66746319--66746380 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
66746309 TATTTTTTAA
*
66746319 TTTTAAATAGTTTTTATT
1 TTTTAAATAATTTTTATT
**
66746337 TATTTTCATAATTTTTATT
1 T-TTTAAATAATTTTTATT
*
66746356 TTTTAAATATATTTTAAATT
1 TTTTAAATA-ATTTT-TATT
66746376 TTTTA
1 TTTTA
66746381 TTTTTTATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 7 0.20
19 20 0.57
20 8 0.23
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTTAAATAATTTTTATT
Found at i:66751133 original size:24 final size:24
Alignment explanation
Indices: 66751102--66751162 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
66751092 TTCTCAATTC
66751102 AATC-AATTTAAATTGATTAATCT
1 AATCTAATTTAAATTGATTAATCT
* *
66751125 AATTTAATTTAATTTGATTAATCT
1 AATCTAATTTAAATTGATTAATCT
*
66751149 AATCTAATTCAAAT
1 AATCTAATTTAAAT
66751163 AATATTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 3 0.09
24 29 0.91
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (24 bp):
AATCTAATTTAAATTGATTAATCT
Found at i:66753781 original size:48 final size:48
Alignment explanation
Indices: 66753671--66753885 Score: 226
Period size: 46 Copynumber: 4.6 Consensus size: 48
66753661 TGATATGTGT
* * * *
66753671 GCTAGTATAAGACATGTCTAGGACATGCATCGG-C-C-ACAT-TACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTAC-A-A
*
66753717 GCTAGTGTAAGACATGTCTGGGATATGCATTGGCCTCGAGATGTACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTACAA
* * ** * * * *
66753765 GCCACTGTAAGACATGTCTGGGACATGCAACGGCATTGAGACG-A-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTACAA
*
66753811 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTACAA
* *
66753859 GCTAGTGTAAGACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
66753886 GCATCTGTTT
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
46 65 0.47
47 3 0.02
48 63 0.46
49 4 0.03
50 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTACAA
Found at i:66753839 original size:94 final size:92
Alignment explanation
Indices: 66753678--66753885 Score: 301
Period size: 94 Copynumber: 2.2 Consensus size: 92
66753668 TGTGCTAGTA
* *
66753678 TAAGACATGTCTAGGACATGCATCGGCCACATTACGAGAGCTAGTGTAAGACATGTCTGGGATAT
1 TAAGACATGTCTAGGACATGCAACGG-C-CATTACGAGAGCTAGTGTAAGACATGTCTGGGACAT
*
66753743 GCATTGGCCTCGAGATGTACAAGCCACTG
64 GCATTGGCCTCGAGATATACAAGCCACTG
*
66753772 TAAGACATGTCTGGGACATGCAACGG-CATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACA
1 TAAGACATGTCTAGGACATGCAACGGCCATT---ACGAGAGCTAGTGTAAGACATGTCTGGGACA
* *
66753836 TGCATTGGCCTCGAGATATACAAGCTAGTG
63 TGCATTGGCCTCGAGATATACAAGCCACTG
*
66753866 TAAGACCTGTCTAGGACATG
1 TAAGACATGTCTAGGACATG
66753886 GCATCTGTTT
Statistics
Matches: 103, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
91 4 0.04
94 99 0.96
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (92 bp):
TAAGACATGTCTAGGACATGCAACGGCCATTACGAGAGCTAGTGTAAGACATGTCTGGGACATGC
ATTGGCCTCGAGATATACAAGCCACTG
Found at i:66753969 original size:49 final size:49
Alignment explanation
Indices: 66753905--66753998 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
66753895 TGTTGTGTGT
*
66753905 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATGAGAGC
* * *
66753954 CAGTGTAAGATCTGTCTAGGACATGGCATCGACATCGATATATGA
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATGA
66753999 AAGTCAATGC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATGAGAGC
Found at i:66754025 original size:49 final size:49
Alignment explanation
Indices: 66753919--66754028 Score: 132
Period size: 49 Copynumber: 2.2 Consensus size: 49
66753909 GTAAGACCTG
* * * *
66753919 TCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGATCTG
1 TCTGGGACATGGCATCGACACCGATAGATGAAAGCCAATGCAAGATCTA
* * * *
66753968 TCTAGGACATGGCATCGACATCGATATATGAAAGTCAATGCAAGA-CTTA
1 TCTGGGACATGGCATCGACACCGATAGATGAAAGCCAATGCAAGATC-TA
66754017 TCTGGGACATGG
1 TCTGGGACATGG
66754029 ATTGACTTTG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 50 0.98
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (49 bp):
TCTGGGACATGGCATCGACACCGATAGATGAAAGCCAATGCAAGATCTA
Found at i:66755840 original size:93 final size:93
Alignment explanation
Indices: 66755733--66755903 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
66755723 GCCCTTAAGT
* *
66755733 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
66755798 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
66755826 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
66755891 CGAGTTCGGATGC
66 CGAGTTCGGATGC
66755904 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:66755900 original size:46 final size:46
Alignment explanation
Indices: 66755728--66755900 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
66755718 AACCCGCCCT
* * * * *
66755728 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
66755774 TAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
66755822 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
66755867 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
66755901 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:66762259 original size:37 final size:37
Alignment explanation
Indices: 66762209--66762287 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66762199 TTATTACGAA
* *
66762209 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
66762246 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
66762283 GTCTT
1 GTCTT
66762288 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:66762484 original size:47 final size:47
Alignment explanation
Indices: 66762406--66762801 Score: 679
Period size: 47 Copynumber: 8.5 Consensus size: 47
66762396 CCCTTCGGGA
* * * * * * *
66762406 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66762453 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66762500 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66762547 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66762594 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66762640 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66762686 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66762733 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66762780 CTTATCACATATATATACTTTC
1 CTTATCACATATATACACTTTC
66762802 TTGGCTGAAT
Statistics
Matches: 335, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
46 92 0.27
47 243 0.73
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66762722 original size:186 final size:188
Alignment explanation
Indices: 66762406--66762801 Score: 679
Period size: 186 Copynumber: 2.1 Consensus size: 188
66762396 CCCTTCGGGA
* * * * * *
66762406 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
66762471 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66762536 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66762594 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
66762658 TTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
66762722 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66762780 CTTATCACATATATATACTTTC
1 CTTATCACATATATACACTTTC
66762802 TTGGCTGAAT
Statistics
Matches: 197, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
186 122 0.62
187 42 0.21
188 33 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66775197 original size:46 final size:46
Alignment explanation
Indices: 66775147--66775322 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66775137 TGATTGAGCA
66775147 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66775193 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66775238 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66775286 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66775323 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66775303 original size:93 final size:93
Alignment explanation
Indices: 66775144--66775315 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66775134 GGATGATTGA
* *
66775144 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66775209 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66775237 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66775302 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66775316 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66779797 original size:93 final size:93
Alignment explanation
Indices: 66779690--66779860 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
66779680 GCCCCTAAGT
* * *
66779690 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
66779755 CGAGTCCGGATGCCTAGTTACATTTCAC
66 CGAGTCCGGATGCCTAGTTACATTTCAC
* *
66779783 GAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
66779848 CGAGTTCGGATGC
66 CGAGTCCGGATGC
66779861 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTCCGGATGCCTAGTTACATTTCAC
Found at i:66779857 original size:46 final size:46
Alignment explanation
Indices: 66779685--66779857 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
66779675 AACCCGCCCC
* * *
66779685 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
66779731 TAAGTGAACTC-GAACTCAACTCAACGAGTCCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCAG-ACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
66779779 TCA-CGAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
66779824 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
66779858 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 56 0.56
47 25 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:66779876 original size:46 final size:45
Alignment explanation
Indices: 66779783--66779868 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
66779773 TACATTTCAC
* *
66779783 GAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACAAGTTCGGA-ATGCGCAACCATAAGT
* * *
66779829 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCAGACTCAACTCAACAAGTTCGGAATGCGCAACCAT
66779869 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (45 bp):
GAACTCAGACTCAACTCAACAAGTTCGGAATGCGCAACCATAAGT
Found at i:66792147 original size:20 final size:19
Alignment explanation
Indices: 66792102--66792139 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
66792092 GAGCGAAAGG
66792102 AACGAG-AAACGGGCCAAA
1 AACGAGAAAACGGGCCAAA
*
66792120 AACGGAGAAAATGGGCCAAA
1 AAC-GAGAAAACGGGCCAAA
66792140 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.50, C:0.18, G:0.29, T:0.03
Consensus pattern (19 bp):
AACGAGAAAACGGGCCAAA
Found at i:66816978 original size:57 final size:58
Alignment explanation
Indices: 66816885--66817023 Score: 138
Period size: 57 Copynumber: 2.4 Consensus size: 58
66816875 AAAAACAATA
* ** ** * * *
66816885 GGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAAA-GAGCTT-GATCT
1 GGATTACCCGTCCAGGCTAAATCCAATCCATAACATATGCTCGAAAGGA-CTTAGATCC
* * *
66816942 GGATTACCCGTCCTGGCTAAATCCAATCCATAACATATGCTCGAGAGGACTTATATCC
1 GGATTACCCGTCCAGGCTAAATCCAATCCATAACATATGCTCGAAAGGACTTAGATCC
* *
66817000 AGATTACCCGTCCGGGCTAAATCC
1 GGATTACCCGTCCAGGCTAAATCC
66817024 TTTCATAAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
57 40 0.60
58 27 0.40
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (58 bp):
GGATTACCCGTCCAGGCTAAATCCAATCCATAACATATGCTCGAAAGGACTTAGATCC
Found at i:66824040 original size:7 final size:7
Alignment explanation
Indices: 66823983--66824040 Score: 71
Period size: 7 Copynumber: 8.3 Consensus size: 7
66823973 CTAGTCAATA
66823983 GGTTTAG
1 GGTTTAG
*
66823990 GCTTTAG
1 GGTTTAG
66823997 GGTTTAG
1 GGTTTAG
* *
66824004 GGCTTAA
1 GGTTTAG
*
66824011 GGTTTAA
1 GGTTTAG
*
66824018 GGTTTAA
1 GGTTTAG
66824025 GGTTTAG
1 GGTTTAG
66824032 GGTTTAG
1 GGTTTAG
66824039 GG
1 GG
66824041 GTGAAACATG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.19, C:0.03, G:0.38, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:66829442 original size:39 final size:39
Alignment explanation
Indices: 66829395--66829523 Score: 186
Period size: 39 Copynumber: 3.3 Consensus size: 39
66829385 TATATGAGAT
66829395 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
66829434 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATAC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* * * * **
66829473 TAGAAATATATCCGGACTTGATGTCCACAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
66829512 TGGAAAAATATC
1 TGGAAATATATC
66829524 AGGGTTAAAG
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:66837454 original size:39 final size:39
Alignment explanation
Indices: 66837408--66837539 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
66837398 TATATGAGAT
66837408 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
66837447 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* **
66837486 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
66837525 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
66837540 GTTAAAGACC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:66837555 original size:78 final size:78
Alignment explanation
Indices: 66837408--66837557 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
66837398 TATATGAGAT
* * * * *
66837408 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAGACC
66837473 GCAGGCTATATGC
66 GCAGGCTATATGC
* * **
66837486 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAGACC
66837550 TGCAGGCT
66 -GCAGGCT
66837558 TACGCTAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 5 0.08
78 57 0.92
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (78 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAGACC
GCAGGCTATATGC
Found at i:66845469 original size:39 final size:39
Alignment explanation
Indices: 66845423--66845554 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
66845413 TATATGAGAT
66845423 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
66845462 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* **
66845501 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
66845540 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
66845555 GTTAAAGACC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:66845570 original size:78 final size:78
Alignment explanation
Indices: 66845423--66845572 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
66845413 TATATGAGAT
* * * * *
66845423 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAGACC
66845488 GCAGGCTATATGC
66 GCAGGCTATATGC
* * **
66845501 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAGACC
66845565 TGCAGGCT
66 -GCAGGCT
66845573 TACGCTAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 5 0.08
78 57 0.92
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (78 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAGACC
GCAGGCTATATGC
Found at i:66848429 original size:40 final size:40
Alignment explanation
Indices: 66848374--66848591 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
66848364 CGGATGATAA
* ** *
66848374 CCGGGCTAAGTCCCGAAGGCATTTGCGTTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
66848414 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66848454 CCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66848494 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
66848534 CCGGGCTATGTCTCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
66848574 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66848592 TACCTGGCTT
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.09
40 143 0.91
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66850760 original size:30 final size:30
Alignment explanation
Indices: 66850724--66850785 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
66850714 TTATGTTTTG
66850724 TAATGTGTATATCATGCTATGTAATATGGC
1 TAATGTGTATATCATGCTATGTAATATGGC
*
66850754 TAATGTGTATATCATGCTATGTGATATGGC
1 TAATGTGTATATCATGCTATGTAATATGGC
66850784 TA
1 TA
66850786 GAATATGGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (30 bp):
TAATGTGTATATCATGCTATGTAATATGGC
Found at i:66850775 original size:16 final size:16
Alignment explanation
Indices: 66850726--66850780 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
66850716 ATGTTTTGTA
66850726 ATGTGTATATCATGCT
1 ATGTGTATATCATGCT
66850742 A--TGTA-AT-ATGGCT
1 ATGTGTATATCAT-GCT
66850755 AATGTGTATATCATGCT
1 -ATGTGTATATCATGCT
66850772 ATGTG-ATAT
1 ATGTGTATAT
66850781 GGCTAGAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
12 2 0.06
13 5 0.15
14 5 0.15
15 4 0.12
16 10 0.30
17 5 0.15
18 2 0.06
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (16 bp):
ATGTGTATATCATGCT
Found at i:66856651 original size:16 final size:16
Alignment explanation
Indices: 66856630--66856664 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
66856620 GCAATTCCCG
*
66856630 AAATGCCGAAAAGCTA
1 AAATGCCGAAAAGCCA
*
66856646 AAATGCTGAAAAGCCA
1 AAATGCCGAAAAGCCA
66856662 AAA
1 AAA
66856665 AGCCAGAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:66856924 original size:28 final size:28
Alignment explanation
Indices: 66856884--66857033 Score: 210
Period size: 28 Copynumber: 5.3 Consensus size: 28
66856874 ATTGCATGAC
66856884 TATGAATGTGATTGGGGCCAATGGGCCA
1 TATGAATGTGATTGGGGCCAATGGGCCA
66856912 TATGAATGTGATTGGGGCCAATGGGCCA
1 TATGAATGTGATTGGGGCCAATGGGCCA
*
66856940 TATGAATGTGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCAATGGGCCA
* **
66856968 TATGAATGTAATTTAGGCCTAATGGGCCA
1 TATGAATGTGATTGGGGCC-AATGGGCCA
* * * *
66856997 TATGAATGAGATTGGGTCTAGTGGGCCA
1 TATGAATGTGATTGGGGCCAATGGGCCA
*
66857025 TATGCATGT
1 TATGAATGT
66857034 ATGTAGACTT
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 86 0.80
29 21 0.20
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCCAATGGGCCA
Found at i:66857022 original size:57 final size:55
Alignment explanation
Indices: 66856884--66857034 Score: 194
Period size: 57 Copynumber: 2.7 Consensus size: 55
66856874 ATTGCATGAC
* * *
66856884 TATGAATGTGATTGGGGCCAATGGGCCATATGAATGTGATTGGGGCCAATGGGCCA
1 TATGAATGTGATTGGGG-CAGTGGGCCATATGAATGTAATTGAGGCCAATGGGCCA
* *
66856940 TATGAATGTGATTGGGGCCGATGGGCCATATGAATGTAATTTAGGCCTAATGGGCCA
1 TATGAATGTGATTGGGGCAG-TGGGCCATATGAATGTAATTGAGGCC-AATGGGCCA
* * *
66856997 TATGAATGAGATTGGGTCTAGTGGGCCATATGCATGTA
1 TATGAATGTGATTGGGGC-AGTGGGCCATATGAATGTA
66857035 TGTAGACTTG
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
55 1 0.01
56 40 0.48
57 41 0.49
58 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.28
Consensus pattern (55 bp):
TATGAATGTGATTGGGGCAGTGGGCCATATGAATGTAATTGAGGCCAATGGGCCA
Found at i:66872775 original size:46 final size:46
Alignment explanation
Indices: 66872725--66872897 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
66872715 TGGTTGAGCA
*
66872725 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
66872771 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
66872816 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGAATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
66872864 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66872898 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 29 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:66872881 original size:93 final size:93
Alignment explanation
Indices: 66872722--66872892 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
66872712 GGATGGTTGA
* * *
66872722 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCGAACTCGTTGAGT
66872787 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
66872815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGAATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCGAACTCGTTGAGT
66872880 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66872893 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66876013 original size:17 final size:18
Alignment explanation
Indices: 66875976--66876014 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
66875966 AGTATAAATG
66875976 TTAATTTTATTAGTAACT
1 TTAATTTTATTAGTAACT
*
66875994 TTAATTTTATTA-TTACT
1 TTAATTTTATTAGTAACT
66876011 TTAA
1 TTAA
66876015 GGTCTATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (18 bp):
TTAATTTTATTAGTAACT
Found at i:66880526 original size:93 final size:93
Alignment explanation
Indices: 66880413--66880584 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66880403 CGCCCATAAG
* *
66880413 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66880478 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
66880506 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
66880571 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
66880585 TCAATCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:66880581 original size:46 final size:46
Alignment explanation
Indices: 66880406--66880581 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66880396 TGTAACCCGC
* *
66880406 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
66880452 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
66880502 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
66880545 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
66880582 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:66888047 original size:18 final size:18
Alignment explanation
Indices: 66888033--66888073 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
66888023 CTCTATCACT
*
66888033 TCATATACATATATCTTA
1 TCATATACATATATCCTA
*
66888051 TCATATACATATAT-ATA
1 TCATATACATATATCCTA
66888068 TCATAT
1 TCATAT
66888074 CAATCCATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (18 bp):
TCATATACATATATCCTA
Found at i:66889505 original size:56 final size:56
Alignment explanation
Indices: 66889445--66889578 Score: 241
Period size: 56 Copynumber: 2.4 Consensus size: 56
66889435 TCCTAGATAG
*
66889445 GGTCTTACTCGCACACATATATCAGAGTCGCATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATAAAACGT
*
66889501 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAATGTATAAAACGT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATAAAACGT
*
66889557 GGCCTTACTCGCACACATATAT
1 GGTCTTACTCGCACACATATAT
66889579 TGATGCCATG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:66895786 original size:42 final size:41
Alignment explanation
Indices: 66895676--66895787 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 41
66895666 TGTGATTATG
* *
66895676 TGTAAGACCATGTCTGGGATATTGGCATCGTATATCAATTCG
1 TGTAAGACCATGTCTGGGATAGTGGCATCGTATATCAA-TCA
* *
66895718 TGTAAGACCCTGTTTGGGATAGTGGCATCGATAGGTGAT-AA-CA
1 TGTAAGACCATGTCTGGGATAGTGGCATCG-TA--T-ATCAATCA
*
66895761 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATGTCTGGGATAGTGGCAT
66895788 TGTAAGAGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
42 33 0.56
43 21 0.36
45 3 0.05
46 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGATAGTGGCATCGTATATCAATCA
Found at i:66900651 original size:42 final size:42
Alignment explanation
Indices: 66900555--66900668 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 42
66900545 CCAACATCCT
* * *
66900555 AGACATGGTCTTACATGTAAACAAATATCAATTCCATTGTCCC
1 AGACGTGGTCTTACATG-AAACAAATATCAATGCCAATGTCCC
*
66900598 AGACAG-GGTCTTACATGAAATCAAATAT-GATGCCAATGTCCC
1 AGAC-GTGGTCTTACATGAAA-CAAATATCAATGCCAATGTCCC
* *
66900640 AGACGTGGTCTTACACGAAAACACATATC
1 AGACGTGGTCTTACATG-AAACAAATATC
66900669 GGATCCTATG
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.02
42 34 0.57
43 25 0.42
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (42 bp):
AGACGTGGTCTTACATGAAACAAATATCAATGCCAATGTCCC
Found at i:66901755 original size:13 final size:13
Alignment explanation
Indices: 66901737--66901761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66901727 ACAAACGATT
66901737 AAATTTTCACACG
1 AAATTTTCACACG
66901750 AAATTTTCACAC
1 AAATTTTCACAC
66901762 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:66911399 original size:40 final size:40
Alignment explanation
Indices: 66911324--66911505 Score: 271
Period size: 40 Copynumber: 4.6 Consensus size: 40
66911314 AACCCAAGTA
* *
66911324 CCTTCAGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-T-AGCACAAATG
*
66911363 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
66911403 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
66911443 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
66911483 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
66911506 CATTCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 12 0.09
40 118 0.89
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:66914082 original size:93 final size:93
Alignment explanation
Indices: 66913970--66914141 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66913960 CGCCCATAAG
* *
66913970 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
66914035 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
66914063 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
66914128 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66914142 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66914138 original size:46 final size:46
Alignment explanation
Indices: 66913963--66914138 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66913953 TGTAACCCGC
* *
66913963 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
66914009 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
66914059 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
66914102 CCATAAGTGAACTCGGAATCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66914139 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66922232 original size:40 final size:40
Alignment explanation
Indices: 66922157--66922378 Score: 342
Period size: 40 Copynumber: 5.6 Consensus size: 40
66922147 AACCCAAGTA
*
66922157 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
* * *
66922196 CCTTCGGGTCTTAGCCCGTATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
66922236 CCTTCGGGACTTGGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
66922276 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66922316 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66922356 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
66922379 CATTCGAATA
Statistics
Matches: 167, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 153 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:66932204 original size:212 final size:212
Alignment explanation
Indices: 66931837--66932258 Score: 781
Period size: 212 Copynumber: 2.0 Consensus size: 212
66931827 CAGGCTAGAC
66931837 CACGGCCATGGCATTTTATCGTAGCCCGTGTTTGGGAAAAATGTTGCCCTGTTTCACACGACCCT
1 CACGGCCATGGCATTTTATCGTAGCCCGTGTTTGGGAAAAATGTTGCCCTGTTTCACACGACCCT
*
66931902 AAGCACGCCCGTGTGCTTGGCCGTGTCTCTGTGGAAAACCTATATTTAAGAGCTCCGTTAGTAAG
66 AAGCACGCCCGTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTTAAGAGCTCCGTTAGTAAG
*
66931967 TTAGGTGTTGAAGACTAAATTTTAAAGAAGTTAACACAGTTAGTGCTCGGGTTGCCTCCCAAGAA
131 TTAGGTGTTGAAGACTAAATTTTAAAGAAGTTAACACAGTTAGTGCTCAGGTTGCCTCCCAAGAA
66932032 GCGCTTATTTATAGTCG
196 GCGCTTATTTATAGTCG
* *
66932049 CACGGCCGTGGCATTTTATCGTAGCCCGTGTTTGGGAGAAATGTTGCCCTGTTTCACACGACCCT
1 CACGGCCATGGCATTTTATCGTAGCCCGTGTTTGGGAAAAATGTTGCCCTGTTTCACACGACCCT
*
66932114 AAGCACGCCTGTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTTAAGAGCTCCGTTAGTAAG
66 AAGCACGCCCGTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTTAAGAGCTCCGTTAGTAAG
* *
66932179 TTAGGTGTTGAAGACTAAATTTTAAAGAAGTTAACATAGTTAGTGCTCAGGTTGCCTCCCGAGAA
131 TTAGGTGTTGAAGACTAAATTTTAAAGAAGTTAACACAGTTAGTGCTCAGGTTGCCTCCCAAGAA
66932244 GCGCTTATTTATAGT
196 GCGCTTATTTATAGT
66932259 TTAAGCTCGA
Statistics
Matches: 203, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
212 203 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (212 bp):
CACGGCCATGGCATTTTATCGTAGCCCGTGTTTGGGAAAAATGTTGCCCTGTTTCACACGACCCT
AAGCACGCCCGTGTGCTTGGCCGTGTCTCTATGGAAAACCTATATTTAAGAGCTCCGTTAGTAAG
TTAGGTGTTGAAGACTAAATTTTAAAGAAGTTAACACAGTTAGTGCTCAGGTTGCCTCCCAAGAA
GCGCTTATTTATAGTCG
Found at i:66941255 original size:16 final size:16
Alignment explanation
Indices: 66941234--66941267 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
66941224 AAACTAAATT
66941234 TTCTGCTCATCTCTTC
1 TTCTGCTCATCTCTTC
*
66941250 TTCTGCTCATCTTTTC
1 TTCTGCTCATCTCTTC
66941266 TT
1 TT
66941268 TTTCTTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.32, G:0.06, T:0.56
Consensus pattern (16 bp):
TTCTGCTCATCTCTTC
Found at i:66942025 original size:8 final size:8
Alignment explanation
Indices: 66942012--66942052 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
66942002 CTAGATCGGC
66942012 AAAAGCCG
1 AAAAGCCG
*
66942020 AAAAGCCA
1 AAAAGCCG
66942028 AAAAGCCG
1 AAAAGCCG
66942036 AAATA-CCG
1 AAA-AGCCG
66942044 AAAAGCCG
1 AAAAGCCG
66942052 A
1 A
66942053 TAAGTTGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 1 0.03
8 27 0.93
9 1 0.03
ACGTcount: A:0.54, C:0.24, G:0.20, T:0.02
Consensus pattern (8 bp):
AAAAGCCG
Found at i:66942505 original size:27 final size:27
Alignment explanation
Indices: 66942465--66942575 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
66942455 AGGAAGTGTC
* *
66942465 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
66942492 CTGGTGGTTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
66942519 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* * *
66942546 CTGGTGACCCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
66942572 CTGG
1 CTGG
66942576 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 16 0.21
27 57 0.76
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:66947338 original size:46 final size:46
Alignment explanation
Indices: 66947175--66947350 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
66947165 TGTAACCCGC
* * * *
66947175 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * * * * *
66947221 ACATGAGTGAACTCAGACTCAACTGAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
66947271 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
66947314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66947351 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.57
47 25 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:66947346 original size:93 final size:93
Alignment explanation
Indices: 66947182--66947353 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
66947172 CGCCCATAAG
* * * * *
66947182 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATACATGAGTGAACTCAGACTCAACTGA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGACTCAACTCA
*
66947247 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
66947275 CGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGACTCAACTCA
66947340 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66947354 TCAACCATCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66953126 original size:27 final size:27
Alignment explanation
Indices: 66953047--66953133 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
66953037 AGGAAGCGTC
* *
66953047 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
66953074 CTGGTGGCTCTGGCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
*
66953101 CTGGTGGCTCTGCCACAATTTTCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
66953128 GTGGTG
1 CTGGTG
66953134 ACCTTGTCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.04
27 48 0.92
28 2 0.04
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:66959943 original size:23 final size:24
Alignment explanation
Indices: 66959900--66959944 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
66959890 ATGCTCGGAC
*
66959900 TCATCATTCAAATAAATCAATATA
1 TCATCAATCAAATAAATCAATATA
66959924 TCATCAAT-AAATACAA-CAATA
1 TCATCAATCAAATA-AATCAATA
66959945 AATTTATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (24 bp):
TCATCAATCAAATAAATCAATATA
Found at i:66974853 original size:17 final size:16
Alignment explanation
Indices: 66974828--66974866 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
66974818 TATAAATGTA
*
66974828 TTGATTCTATTGTTGTG
1 TTGAATCTATTG-TGTG
66974845 TTGAATCTATTGTGTG
1 TTGAATCTATTGTGTG
*
66974861 ATGAAT
1 TTGAAT
66974867 GAATGATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.21, C:0.05, G:0.23, T:0.51
Consensus pattern (16 bp):
TTGAATCTATTGTGTG
Found at i:66974865 original size:16 final size:17
Alignment explanation
Indices: 66974833--66974866 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
66974823 ATGTATTGAT
*
66974833 TCTATTGTTGTGTTGAA
1 TCTATTGTTGTGATGAA
66974850 TCTATTG-TGTGATGAA
1 TCTATTGTTGTGATGAA
66974866 T
1 T
66974867 GAATGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.50
Consensus pattern (17 bp):
TCTATTGTTGTGATGAA
Found at i:66981737 original size:27 final size:27
Alignment explanation
Indices: 66981699--66981786 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
66981689 TAAGACCTAT
66981699 GTTTGTAAAATTA-CTGAAATACCCCCG
1 GTTTGTAAAATTATC-GAAATACCCCCG
**
66981726 GTTTGTAAAATTATCGAAATACCCTTG
1 GTTTGTAAAATTATCGAAATACCCCCG
* *
66981753 ATTTGTAAAATTATCGAAATACCCCCA
1 GTTTGTAAAATTATCGAAATACCCCCG
66981780 GTTTGTA
1 GTTTGTA
66981787 CCTGATTTGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (27 bp):
GTTTGTAAAATTATCGAAATACCCCCG
Found at i:66981856 original size:91 final size:92
Alignment explanation
Indices: 66981700--66981867 Score: 252
Period size: 91 Copynumber: 1.8 Consensus size: 92
66981690 AAGACCTATG
* * **
66981700 TTTGTAAAATTACTGAAATACCCCCGGTTTGTAAAATTATCGAAATACCCTTGATTTGTAAAATT
1 TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTATCGAAATAACCTTGATGGGTAAAATT
*
66981765 ATCGAAATACCCCCAGTTTGTACCTGA
66 ACCGAAATACCCCCAGTTTGTACCTGA
66981792 TTTGTAAAATTA-TCGAAATACCCCCAG-TTGTAAAATTATCGAAATAACCTTG-TAGGGTAAAA
1 TTTGTAAAATTACT-GAAATACCCCCAGTTTGTAAAATTATCGAAATAACCTTGAT-GGGTAAAA
66981854 TTACCGAAATACCC
64 TTACCGAAATACCC
66981868 TTGTAGTGTA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
90 1 0.01
91 44 0.64
92 24 0.35
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (92 bp):
TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTATCGAAATAACCTTGATGGGTAAAATT
ACCGAAATACCCCCAGTTTGTACCTGA
Found at i:66981861 original size:27 final size:27
Alignment explanation
Indices: 66981821--66981935 Score: 158
Period size: 27 Copynumber: 4.3 Consensus size: 27
66981811 ACCCCCAGTT
* *
66981821 GTAAAATTATCGAAATAACCTTGTAGG
1 GTAAAATTACCGAAATACCCTTGTAGG
*
66981848 GTAAAATTACCGAAATACCCTTGTAGT
1 GTAAAATTACCGAAATACCCTTGTAGG
* * *
66981875 GTAAAATTACTGATATACCCTTGTAGT
1 GTAAAATTACCGAAATACCCTTGTAGG
*
66981902 GTAAAATTACCGAAATACCCCTGTAGG
1 GTAAAATTACCGAAATACCCTTGTAGG
*
66981929 GCAAAAT
1 GTAAAAT
66981936 GATTGTTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTTGTAGG
Found at i:66981906 original size:54 final size:54
Alignment explanation
Indices: 66981794--66981927 Score: 166
Period size: 54 Copynumber: 2.5 Consensus size: 54
66981784 GTACCTGATT
* **
66981794 TGTAAAATTATCGAAATACCC-CCAGTTGTAAAATTATCGAAATAACCTTGTAG
1 TGTAAAATTACCGAAATACCCTGTAGTTGTAAAATTATCGAAATAACCTTGTAG
* * *
66981847 GGTAAAATTACCGAAATACCCTTGTAG-TGTAAAATTA-CTGATATACCCTTGTAG
1 TGTAAAATTACCGAAATACCC-TGTAGTTGTAAAATTATC-GAAATAACCTTGTAG
66981901 TGTAAAATTACCGAAATACCCCTGTAG
1 TGTAAAATTACCGAAATA-CCCTGTAG
66981928 GGCAAAATGA
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
53 20 0.29
54 45 0.64
55 5 0.07
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (54 bp):
TGTAAAATTACCGAAATACCCTGTAGTTGTAAAATTATCGAAATAACCTTGTAG
Found at i:66984629 original size:55 final size:54
Alignment explanation
Indices: 66984473--66984654 Score: 158
Period size: 55 Copynumber: 3.3 Consensus size: 54
66984463 TATCCTTTTG
* * *
66984473 AAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCC-T-TAT
1 AAACTTACAATT-CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAT
* * * * * *
66984526 GAACTCACTAATGCCATGCCTTGGCATGGTCTTACAT-AGGA-CCTTTGCCTTATAT
1 AAACTTAC-AATTCCATGTCTTGACATGGTCTTACATGA-TATCC-TTGCCTTATAT
* *
66984581 AAACTTATCAATTCCATTTCTTGACATGGTCTTACATGATATCCTTGCCTTAGA-
1 AAACTTA-CAATTCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAT
*
66984635 AACCTTACCAATTGCCATGT
1 AAACTTA-CAATT-CCATGT
66984655 AACACCCCTA
Statistics
Matches: 100, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
52 2 0.02
53 33 0.33
54 14 0.14
55 47 0.47
56 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (54 bp):
AAACTTACAATTCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAT
Found at i:66985742 original size:39 final size:39
Alignment explanation
Indices: 66985683--66985828 Score: 229
Period size: 39 Copynumber: 3.7 Consensus size: 39
66985673 TTCCAACCCA
* * *
66985683 AATGGCTTCGGAACTTAGCCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
66985722 AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
66985761 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
66985800 AATGCCTTCGAGCCTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
66985829 ATCTCACATA
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:66993758 original size:39 final size:39
Alignment explanation
Indices: 66993703--66993878 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
66993693 TTCCAACCCA
* * *
66993703 AATGCCTTCGGAACTTAGCCTGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
66993742 AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
66993781 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
66993820 AATGCCTTCGGGCCTTAGCCCGGATATAAATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATAT-AATATCAGCACG
* * *
66993858 AAGGCCTGCGGGTCTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
66993879 TGTTAAAATC
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 18 0.15
39 101 0.81
40 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:67013099 original size:48 final size:47
Alignment explanation
Indices: 67013041--67013218 Score: 232
Period size: 48 Copynumber: 3.7 Consensus size: 47
67013031 ATATCGGTGC
*** * * *
67013041 CGATGCCATGTCCTGGACATGGTGTTACACTAGCACATATATCATCG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCG
* *
67013088 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCG
*
67013136 CCGATGCCATGTCCCAAACATGGTCTTACATTGGCACACATATCAATACG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATC-AT-CG
67013186 -GATGCCATGTCCCAAACATGGTCTTACACTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGC
67013219 TCCCATCTCT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 114 0.97
49 1 0.01
50 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCG
Found at i:67013139 original size:96 final size:96
Alignment explanation
Indices: 67013039--67013218 Score: 256
Period size: 96 Copynumber: 1.9 Consensus size: 96
67013029 TCATATCGGT
*** * *
67013039 GCCGATGCCATGTCCTGGACATGGTGTTACACTAGCACATATATC-AT-CGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATACG--GATGCCATGTCC
*
67013102 CAGACATGGTCTTACACTGGCACACATATCAAC
64 CAAACATGGTCTTACACTGGCACACATATCAAC
* *
67013135 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCACACATATCAATACGGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATACGGATGCCATGTCCCA
67013200 AACATGGTCTTACACTGGC
66 AACATGGTCTTACACTGGC
67013219 TCCCATCTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
96 70 0.95
97 2 0.03
98 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATACGGATGCCATGTCCCA
AACATGGTCTTACACTGGCACACATATCAAC
Found at i:67017806 original size:48 final size:50
Alignment explanation
Indices: 67017687--67017810 Score: 157
Period size: 48 Copynumber: 2.5 Consensus size: 50
67017677 CTAGTATGCA
** *
67017687 TAGTAGCCTGCACTTAGTACT--ACACATGAGACCAATTAGCCGGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACACATGAGA-CAACCAGCCGATACAAG
* * *
67017736 TAGTAGCCTGCACTTAGTACTACACACATG-G-CAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGAGACAACCAGCCGATACAAG
67017784 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
67017811 GTGATCGAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
48 38 0.57
49 21 0.31
50 1 0.01
51 7 0.10
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACATGAGACAACCAGCCGATACAAG
Found at i:67020633 original size:15 final size:15
Alignment explanation
Indices: 67020615--67020647 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
67020605 GAAGTCGAGA
67020615 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
67020630 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
67020645 ATA
1 ATA
67020648 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67023804 original size:49 final size:49
Alignment explanation
Indices: 67023748--67023979 Score: 311
Period size: 49 Copynumber: 4.7 Consensus size: 49
67023738 CTAGTACGCA
* *
67023748 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
* * ** *
67023797 TAGTAGCCTGCACTTAATACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
67023847 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
* *
67023898 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
*
67023947 TAGTAGCGTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
67023980 TCACAATAGA
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 71 0.46
50 46 0.30
51 38 0.25
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:67023971 original size:100 final size:99
Alignment explanation
Indices: 67023748--67023979 Score: 322
Period size: 100 Copynumber: 2.3 Consensus size: 99
67023738 CTAGTACGCA
* *
67023748 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
67023813 ATACTACACACATGACCTAACCATCTGATACACG
66 ATACTACACACACGACCTAACCATCTGATACACG
* * *
67023847 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* ** ** *
67023912 TAGTACTACACATGCGACC-AATTATCTGGTACACG
64 TAATACTACACACACGACCTAACCATCTGATACACG
*
67023947 TAGTAGCGTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
67023980 TCACAATAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 31 0.26
100 46 0.39
101 40 0.34
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
ATACTACACACACGACCTAACCATCTGATACACG
Found at i:67028521 original size:48 final size:48
Alignment explanation
Indices: 67028482--67028798 Score: 420
Period size: 48 Copynumber: 6.6 Consensus size: 48
67028472 ATCGGTGCTA
* * * *
67028482 ATGCCATCTCCTAGACATGGTCTTATACTAGCACACATATC-ATCACCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAAT-GCCG
* * * * *
67028530 ATGCCATGTCCCAGACATGGTCTTATACTGACACATATATCAATACCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAATGCCG
*
67028578 ATGCCATGTCCTAGACATGGTATTACACTGGCACACATATCAATGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAATGCCG
*
67028626 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAATGCCG
* *
67028674 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAATGCCG
* * * * * **
67028722 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCCCATCTTGGATGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACAT-ATCAATGCCG
*
67028771 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCTAGACATGGTCTTACAC
67028799 GGGATCTCAT
Statistics
Matches: 245, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
48 210 0.86
49 35 0.14
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAATGCCG
Found at i:67034811 original size:27 final size:27
Alignment explanation
Indices: 67034780--67034955 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
67034770 TAAATTGTAC
*
67034780 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67034807 TGCACTAAGTGTGCGA--AAAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67034831 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
67034859 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67034887 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67034914 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67034941 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67034956 GACTCAATAT
Statistics
Matches: 121, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
25 20 0.17
27 79 0.65
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67034919 original size:55 final size:54
Alignment explanation
Indices: 67034780--67034955 Score: 187
Period size: 55 Copynumber: 3.3 Consensus size: 54
67034770 TAAATTGTAC
* * *
67034780 AGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGA--AAAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTAAATATGT
* * ** *
67034831 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTAACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAG-TTAAATATGT
* * * * *
67034887 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTAAATATGT
*
67034941 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67034956 GACTCAATAT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
51 1 0.01
52 37 0.36
54 21 0.20
55 43 0.42
56 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTAAATATGT
Found at i:67042719 original size:25 final size:25
Alignment explanation
Indices: 67042687--67042857 Score: 157
Period size: 25 Copynumber: 6.6 Consensus size: 25
67042677 TTAAATTTAC
67042687 AGCACTAAGTGTGCGATTTGAATGT
1 AGCACTAAGTGTGCGATTTGAATGT
* ** *
67042712 TGCACTAAGTGTGCGAAATAAATG-
1 AGCACTAAGTGTGCGATTTGAATGT
* *
67042736 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGA--ATGT
*
67042764 GGCACTAAGTGTGCGAGTTT-ATATGT
1 AGCACTAAGTGTGCGA-TTTGA-ATGT
*
67042790 AGCACTAAGTGTGCGATTTGATTAGT
1 AGCACTAAGTGTGCGATTTGAAT-GT
* *
67042816 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGA--ATGT
*
67042843 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67042858 GACTCAATAT
Statistics
Matches: 120, Mismatches: 17, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
25 42 0.35
26 41 0.34
27 34 0.28
28 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (25 bp):
AGCACTAAGTGTGCGATTTGAATGT
Found at i:67042801 original size:26 final size:25
Alignment explanation
Indices: 67042687--67042857 Score: 141
Period size: 26 Copynumber: 6.6 Consensus size: 25
67042677 TTAAATTTAC
67042687 AGCACTAAGTGTGCGATTTGA-ATGT
1 AGCACTAAGTGTGCGATTT-ATATGT
* ** *
67042712 TGCACTAAGTGTGCGAAATAAATG-
1 AGCACTAAGTGTGCGATTTATATGT
* * *
67042736 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTTA-TATGT
*
67042764 GGCACTAAGTGTGCGAGTTTATATGT
1 AGCACTAAGTGTGCGA-TTTATATGT
67042790 AGCACTAAGTGTGCGATTTGAT-TAGT
1 AGCACTAAGTGTGCGATTT-ATAT-GT
* *
67042816 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTTA-TATGT
*
67042843 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67042858 GACTCAATAT
Statistics
Matches: 119, Mismatches: 16, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
24 1 0.01
25 37 0.31
26 42 0.35
27 38 0.32
28 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (25 bp):
AGCACTAAGTGTGCGATTTATATGT
Found at i:67042821 original size:52 final size:52
Alignment explanation
Indices: 67042687--67042857 Score: 179
Period size: 53 Copynumber: 3.3 Consensus size: 52
67042677 TTAAATTTAC
* ** *
67042687 AGCACTAAGTGTGCGATTTGAAT-GTTGCACTAAGTGTGCGA-AATAAATG-
1 AGCACTAAGTGTGCGATTTGAATAGTAGCACTAAGTGTGCGAGTTTATATGT
* **
67042736 ATGCACTAAGTGTGCGAATTGACCAT-GCGGCACTAAGTGTGCGAGTTTATATGT
1 A-GCACTAAGTGTGCGATTTGA--ATAGTAGCACTAAGTGTGCGAGTTTATATGT
* * *
67042790 AGCACTAAGTGTGCGATTTGATTAGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGAATAGTAGCACTAAGTGTGCGAGTTTA-TATGT
*
67042843 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67042858 GACTCAATAT
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
49 1 0.01
50 19 0.19
51 1 0.01
52 38 0.37
53 42 0.41
54 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (52 bp):
AGCACTAAGTGTGCGATTTGAATAGTAGCACTAAGTGTGCGAGTTTATATGT
Found at i:67046720 original size:27 final size:27
Alignment explanation
Indices: 67046689--67046863 Score: 185
Period size: 27 Copynumber: 6.6 Consensus size: 27
67046679 TAAATTGTAC
*
67046689 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* ** *
67046716 TGCACTAAGTGTGCGA--AAAATATG-
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
67046740 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGACTATGT
*
67046768 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
67046795 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
67046822 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
67046849 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67046864 GACTCAATAT
Statistics
Matches: 123, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
25 20 0.16
27 103 0.84
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:67054637 original size:27 final size:27
Alignment explanation
Indices: 67054606--67054782 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
67054596 TAAATTGTAC
67054606 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67054633 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67054659 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67054687 GGCACTAAGTGTGCGAGTTT-ACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67054714 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67054741 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67054768 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67054783 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 122 0.96
28 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67054667 original size:54 final size:55
Alignment explanation
Indices: 67054606--67054782 Score: 216
Period size: 54 Copynumber: 3.3 Consensus size: 55
67054596 TAAATTGTAC
* **
67054606 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** * *
67054661 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
67054714 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
67054768 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67054783 GACTCAATAT
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 102 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:67054746 original size:81 final size:81
Alignment explanation
Indices: 67054607--67054761 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
67054597 AAATTGTACA
* *
67054607 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
67054672 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
67054688 GCACTAAGTGTGCGAGTTT-ACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
67054751 GTGCGAGTTGA
64 GTGCGAATTGA
67054762 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 62 0.94
82 3 0.05
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67054773 original size:81 final size:81
Alignment explanation
Indices: 67054603--67054782 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
67054593 GATTAAATTG
* *
67054603 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67054668 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67054684 TGCGGCACTAAGTGTGCGAGTTT-ACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67054747 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67054765 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67054783 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 79 0.95
82 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67057170 original size:40 final size:40
Alignment explanation
Indices: 67057111--67057288 Score: 288
Period size: 40 Copynumber: 4.5 Consensus size: 40
67057101 CGGATGATAA
*
67057111 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67057151 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67057191 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67057231 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67057271 GC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67057289 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 17 0.13
40 114 0.87
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67057556 original size:22 final size:22
Alignment explanation
Indices: 67057516--67057557 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
67057506 GAATGTGCAT
*
67057516 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
67057538 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
67057558 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:67065217 original size:39 final size:40
Alignment explanation
Indices: 67065120--67065217 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
67065110 CAGATGATAA
* *
67065120 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAT
*
67065160 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CTATAT
*
67065200 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67065218 TACTTGGGTT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 17 0.32
40 36 0.68
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAT
Found at i:67065485 original size:22 final size:22
Alignment explanation
Indices: 67065445--67065486 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
67065435 GAATGTGCAT
*
67065445 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
67065467 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
67065487 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:67065997 original size:12 final size:12
Alignment explanation
Indices: 67065977--67066007 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
67065967 AGTAGGAATG
*
67065977 GAATTAAATAGT
1 GAATAAAATAGT
67065989 GAATAAAATAGT
1 GAATAAAATAGT
67066001 GAATAAA
1 GAATAAA
67066008 TTATGTAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.16, T:0.26
Consensus pattern (12 bp):
GAATAAAATAGT
Found at i:67068849 original size:19 final size:20
Alignment explanation
Indices: 67068808--67068849 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
67068798 TTTTGTAAAG
* *
67068808 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
67068828 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
67068847 TTT
1 TTT
67068850 AGGTTTCTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:67069479 original size:46 final size:46
Alignment explanation
Indices: 67069355--67069672 Score: 161
Period size: 48 Copynumber: 6.8 Consensus size: 46
67069345 TAGCCACATT
*
67069355 ACGAGAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
1 ACGAGAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
* * *
67069401 A-GTTGCAAGTCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAG
1 ACG-AG--AGTCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
* * * *
67069449 ACGAGAG-CTAGTGTAAGGCATATCTGGGACATGCATCTGCTTCGAG
1 ACGAGAGTC-AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
** * * * * * * *
67069495 ATATAAAAG-CTAGTGTAAAACCTGTTTGGGACATGGCGTCAGC-T--TG
1 --ACGAGAGTC-AGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAG
** * * * *
67069541 TTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACA-C-AG
1 ACGAGAGTCAGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAG
* * * *
67069586 A-TAGAGTCAGTGTAAGACCTGTCTGGGACACGGCATCGGTC-TCGATAT
1 ACGAGAGTCAGTGTAAGACATGTCTGGGACA-TGCATCGG-CATCG--AG
* * * *
67069634 ATGAAAGTTAGTGTAAGACCTGTCTGGGACATGGCATCG
1 ACGAGAGTCAGTGTAAGACATGTCTGGGACAT-GCATCG
67069673 ACTTTGATGT
Statistics
Matches: 209, Mismatches: 44, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
44 61 0.29
45 6 0.03
46 36 0.17
48 67 0.32
49 39 0.19
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
ACGAGAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
Found at i:67069479 original size:94 final size:94
Alignment explanation
Indices: 67069355--67069529 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 94
67069345 TAGCCACATT
* **
67069355 ACGAGAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGT-TGCAAG-TCAGTGTA
1 ACGAGAGTCAGTGTAAGACATATCTGGGACATGCATCGGCCTCGAGA-TATAAAAGCT-AGTGTA
*
67069418 AGACATGTTTGGGACATGCATCGGCATTGAG
64 AAACATGTTTGGGACATGCATCGGCATTGAG
* * *
67069449 ACGAGAG-CTAGTGTAAGGCATATCTGGGACATGCATCTGCTTCGAGATATAAAAGCTAGTGTAA
1 ACGAGAGTC-AGTGTAAGACATATCTGGGACATGCATCGGCCTCGAGATATAAAAGCTAGTGTAA
*
67069513 AACCTGTTTGGGACATG
65 AACATGTTTGGGACATG
67069530 GCGTCAGCTT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.03
94 67 0.96
95 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (94 bp):
ACGAGAGTCAGTGTAAGACATATCTGGGACATGCATCGGCCTCGAGATATAAAAGCTAGTGTAAA
ACATGTTTGGGACATGCATCGGCATTGAG
Found at i:67069595 original size:44 final size:47
Alignment explanation
Indices: 67069360--67069674 Score: 174
Period size: 44 Copynumber: 6.8 Consensus size: 47
67069350 ACATTACGAG
* * *
67069360 AGTCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGAGT-TGCA
1 AGTCAGTGTAAGACCTGTCTGGGACATGGCATC-GACACGAGA-TATG-A
* * * * *
67069408 AGTCAGTGTAAGACATGTTTGGGACAT-GCATCGGCATTGAG--ACGA
1 AGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACA-CGAGATATGA
* * * * *
67069453 GAG-CTAGTGTAAGGCATATCTGGGACAT-GCATCTG-CTTCGAGATATAAA
1 -AGTC-AGTGTAAGACCTGTCTGGGACATGGCATC-GAC-ACGAGATAT-GA
* * * * ** * *
67069502 AG-CTAGTGTAAAACCTGTTTGGGACATGGCGTC-A-GCTTGTTGTG-
1 AGTC-AGTGTAAGACCTGTCTGGGACATGGCATCGACACGAGATATGA
*
67069546 TGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-AGATA-G-
1 AGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACGAGATATGA
* * * *
67069590 AGTCAGTGTAAGACCTGTCTGGGACACGGCATCGGTCTCGATATATGAA
1 AGTCAGTGTAAGACCTGTCTGGGACATGGCATC-GACACGAGATATG-A
*
67069639 AGTTAGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 AGTCAGTGTAAGACCTGTCTGGGACATGGCATCGAC
67069675 TTTGATGTGC
Statistics
Matches: 208, Mismatches: 40, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
44 59 0.28
45 9 0.04
46 41 0.20
47 4 0.02
48 59 0.28
49 36 0.17
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACGAGATATGA
Found at i:67069659 original size:49 final size:45
Alignment explanation
Indices: 67069547--67069672 Score: 164
Period size: 49 Copynumber: 2.7 Consensus size: 45
67069537 CTTGTTGTGT
67069547 GTCAGTGTAAGACCTGTCTGGGACATGGCATC-GACACAGATAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGACACAGATAGA
* * * *
67069591 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGGTCTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGACAC-AGATA-G--A
*
67069640 GTTAGTGTAAGACCTGTCTGGGACATGGCATCG
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCG
67069673 ACTTTGATGT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
44 31 0.44
45 3 0.04
46 4 0.06
47 1 0.01
49 32 0.45
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (45 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGACACAGATAGA
Found at i:67078877 original size:108 final size:108
Alignment explanation
Indices: 67078687--67078983 Score: 513
Period size: 108 Copynumber: 2.7 Consensus size: 108
67078677 ATAAGGATAT
* * * *
67078687 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
67078752 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * * *
67078796 CATGTAAGACCATGCTAAGGAATGGCATTGGTGAGTTCATAAGACGAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
67078861 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
67078904 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
67078969 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
67078984 ATAGTAAATT
Statistics
Matches: 176, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
108 142 0.81
109 34 0.19
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:67078981 original size:53 final size:54
Alignment explanation
Indices: 67078679--67078983 Score: 388
Period size: 55 Copynumber: 5.6 Consensus size: 54
67078669 TTGGTAAGAT
* * * *
67078679 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
67078733 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
67078788 AAAGG-TCCCATGTAAGACCATG-CTAAGGA-ATGGCATTGGTGAGTTC-ATAAGAC
1 -AAGGATACCATGTAAGACCATGTC-AA-GACATGGCATTGATGAGTTCTATAAGGC
*
67078841 GAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
67078896 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
67078949 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
67078984 ATAGTAAATT
Statistics
Matches: 219, Mismatches: 21, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
52 9 0.04
53 73 0.33
54 46 0.21
55 82 0.37
56 9 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Done.