Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 195 of 311
Found at i:67083923 original size:3 final size:3
Alignment explanation
Indices: 67083915--67083939 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67083905 TAATTATGAC
67083915 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
67083940 GCATTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:67089266 original size:42 final size:42
Alignment explanation
Indices: 67089110--67089267 Score: 165
Period size: 42 Copynumber: 3.7 Consensus size: 42
67089100 AGTACTACAC
* * * **
67089110 CAATGCCATAACCCAGATATGATCTTACATAGGATCT-AGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACAAAATCTCA-TAT
* * * * * **
67089152 CAATTCCAATAGCCTAGCTACGGTCTTACATGAAATCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATAT
*
67089195 CGATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAT
*
67089237 TAATGCCATATCCCAGATATGGTCTTACACA
1 CAATGCCATATCCCAGATATGGTCTTACACA
67089268 TAGTCTTGGT
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 64 0.67
43 30 0.32
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAT
Found at i:67093898 original size:12 final size:12
Alignment explanation
Indices: 67093881--67093924 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
67093871 AATTGAAATG
*
67093881 AAAATAAAAATA
1 AAAATAAGAATA
*
67093893 AGAATAAGAATA
1 AAAATAAGAATA
*
67093905 AGAATAAGAATA
1 AAAATAAGAATA
67093917 AAAA-AAGA
1 AAAATAAGA
67093925 TAGGAGGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 4 0.14
12 25 0.86
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (12 bp):
AAAATAAGAATA
Found at i:67093904 original size:18 final size:18
Alignment explanation
Indices: 67093881--67093924 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
67093871 AATTGAAATG
*
67093881 AAAATAAAAATAAGAATA
1 AAAATAAGAATAAGAATA
*
67093899 AGAATAAGAATAAGAATA
1 AAAATAAGAATAAGAATA
67093917 AAAA-AAGA
1 AAAATAAGA
67093925 TAGGAGGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (18 bp):
AAAATAAGAATAAGAATA
Found at i:67118292 original size:12 final size:12
Alignment explanation
Indices: 67118275--67118299 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67118265 TGGACAAAAA
67118275 TTGGCTTTTAAT
1 TTGGCTTTTAAT
67118287 TTGGCTTTTAAT
1 TTGGCTTTTAAT
67118299 T
1 T
67118300 CATTTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TTGGCTTTTAAT
Found at i:67122448 original size:28 final size:28
Alignment explanation
Indices: 67122385--67122566 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
67122375 ATATTAAGTC
* *
67122385 CGCACACTCAGTGCAATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
67122412 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
67122440 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67122468 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67122496 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67122524 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67122553 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67122567 CAATCTCATG
Statistics
Matches: 145, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 21 0.14
28 105 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67130632 original size:28 final size:28
Alignment explanation
Indices: 67130569--67130747 Score: 288
Period size: 28 Copynumber: 6.4 Consensus size: 28
67130559 ATATTAAGTC
*
67130569 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
67130596 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
67130624 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67130652 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67130680 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67130708 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67130737 CGCACACTTAG
1 CGCACACTTAG
67130748 CGCCAATCTC
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.15
28 105 0.73
29 16 0.11
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67141193 original size:28 final size:28
Alignment explanation
Indices: 67141130--67141308 Score: 288
Period size: 28 Copynumber: 6.4 Consensus size: 28
67141120 ATATTAAGTC
*
67141130 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
67141157 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
67141185 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67141213 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67141241 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67141269 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67141298 CGCACACTTAG
1 CGCACACTTAG
67141309 CGCCAATCTC
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.15
28 105 0.73
29 16 0.11
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67155426 original size:19 final size:18
Alignment explanation
Indices: 67155404--67155440 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
67155394 AATTAAAATT
67155404 AAAATTAAAAATATTTATA
1 AAAATTAAAAA-ATTTATA
*
67155423 AAAATTCAAAAATTTATA
1 AAAATTAAAAAATTTATA
67155441 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTAAAAAATTTATA
Found at i:67155451 original size:18 final size:19
Alignment explanation
Indices: 67155430--67155471 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
67155420 ATAAAAATTC
67155430 AAAAATTTATA-TTTTTAA
1 AAAAATTTATATTTTTTAA
67155448 AAAAA-TTATATTTTTTAA
1 AAAAATTTATATTTTTTAA
67155466 AAAAAT
1 AAAAAT
67155472 CTAAAGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AAAAATTTATATTTTTTAA
Found at i:67155997 original size:19 final size:19
Alignment explanation
Indices: 67155945--67155998 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
67155935 GTAACAAAAT
*
67155945 TTTTCTATAATTTTTTATTG
1 TTTT-TATAATTTTTTAATG
* *
67155965 TTTTTACAAGTTTTTAATG
1 TTTTTATAATTTTTTAATG
67155984 TTTTTATAATTTTTT
1 TTTTTATAATTTTTT
67155999 TAAAAAATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 25 0.86
20 4 0.14
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (19 bp):
TTTTTATAATTTTTTAATG
Found at i:67157825 original size:34 final size:33
Alignment explanation
Indices: 67157787--67157862 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
67157777 GTGGCATGCT
* *
67157787 TAGATCAATGTGATAACATTTAATGGGCTTATAA
1 TAGATCAAT-TGATAACAATTAATAGGCTTATAA
* * *
67157821 TAGATCAATTGGTAGCAATTAATATGCTTATAA
1 TAGATCAATTGATAACAATTAATAGGCTTATAA
67157854 TAGATCAAT
1 TAGATCAAT
67157863 ACGATAGTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (33 bp):
TAGATCAATTGATAACAATTAATAGGCTTATAA
Found at i:67157882 original size:34 final size:34
Alignment explanation
Indices: 67157813--67157929 Score: 130
Period size: 33 Copynumber: 3.5 Consensus size: 34
67157803 CATTTAATGG
* *
67157813 GCTTATAATAGATCAAT-TGGTAGCAATTAATAT
1 GCTTATAATAGATCAATACGATAGCAATTAATAT
* *
67157846 GCTTATAATAGATCAATACGATAGTACTTAATAT
1 GCTTATAATAGATCAATACGATAGCAATTAATAT
* * * *
67157880 GCTTATAATCGGTC-ATACAATTGCAATTAATAT
1 GCTTATAATAGATCAATACGATAGCAATTAATAT
* *
67157913 GCTTATCATAAATCAAT
1 GCTTATAATAGATCAAT
67157930 TCAGTAGCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
33 42 0.62
34 26 0.38
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (34 bp):
GCTTATAATAGATCAATACGATAGCAATTAATAT
Found at i:67159366 original size:7 final size:7
Alignment explanation
Indices: 67159354--67159379 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
67159344 TATTTGCATG
67159354 TATATAA
1 TATATAA
67159361 TATATAA
1 TATATAA
67159368 TATATAA
1 TATATAA
67159375 TATAT
1 TATAT
67159380 TTTTATCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TATATAA
Found at i:67159877 original size:14 final size:14
Alignment explanation
Indices: 67159860--67159886 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67159850 ATTAATTTTT
67159860 TAATATTAAAATAA
1 TAATATTAAAATAA
67159874 TAATATTAAAATA
1 TAATATTAAAATA
67159887 GTGCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TAATATTAAAATAA
Found at i:67162285 original size:12 final size:13
Alignment explanation
Indices: 67162268--67162296 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
67162258 CAATCGATTC
67162268 TTTTATTTTT-AT
1 TTTTATTTTTAAT
67162280 TTTTATTTTTAAT
1 TTTTATTTTTAAT
67162293 TTTT
1 TTTT
67162297 GATGTTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTATTTTTAAT
Found at i:67162525 original size:17 final size:17
Alignment explanation
Indices: 67162503--67162562 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
67162493 TGTATTTTTA
67162503 TATTAAATTTAAAATTT
1 TATTAAATTTAAAATTT
* *
67162520 TATTAAA-GTAATATTT
1 TATTAAATTTAAAATTT
*
67162536 TAATTAAAATTTATTAATTT
1 T-ATT-AAATTTA-AAATTT
*
67162556 TACTAAA
1 TATTAAA
67162563 ATTTGAGGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 8 0.24
17 10 0.30
18 6 0.18
19 4 0.12
20 5 0.15
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TATTAAATTTAAAATTT
Found at i:67166409 original size:27 final size:28
Alignment explanation
Indices: 67166375--67166457 Score: 100
Period size: 29 Copynumber: 3.0 Consensus size: 28
67166365 CCTTTGTTTC
* *
67166375 ACTT-TTTTCTTT-TTCTCACTT-TTGTT
1 ACTTCTTTTCTTTGTTCACAATTCTT-TT
67166401 ACTTCTTTTCCTTTGTTCACAATTCTTTT
1 ACTTCTTTT-CTTTGTTCACAATTCTTTT
67166430 ACTTCTTTTCCTTTGTTCACAATTCTTT
1 ACTTCTTTT-CTTTGTTCACAATTCTTT
67166458 CATCACTCTA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
26 4 0.08
27 4 0.08
28 4 0.08
29 37 0.73
30 2 0.04
ACGTcount: A:0.12, C:0.23, G:0.04, T:0.61
Consensus pattern (28 bp):
ACTTCTTTTCTTTGTTCACAATTCTTTT
Found at i:67166431 original size:29 final size:29
Alignment explanation
Indices: 67166399--67166457 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
67166389 CTCACTTTTG
67166399 TTACTTCTTTTCCTTTGTTCACAATTCTT
1 TTACTTCTTTTCCTTTGTTCACAATTCTT
67166428 TTACTTCTTTTCCTTTGTTCACAATTCTT
1 TTACTTCTTTTCCTTTGTTCACAATTCTT
67166457 T
1 T
67166458 CATCACTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.14, C:0.24, G:0.03, T:0.59
Consensus pattern (29 bp):
TTACTTCTTTTCCTTTGTTCACAATTCTT
Found at i:67166501 original size:21 final size:21
Alignment explanation
Indices: 67166460--67166502 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
67166450 AATTCTTTCA
*
67166460 TCACTCTATTTCTTTCTCTTT
1 TCACTCTATTTCTTTCACTTT
67166481 TCACTCTGATTTC-TTCACTTT
1 TCACTCT-ATTTCTTTCACTTT
67166502 T
1 T
67166503 TTAATTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.12, C:0.28, G:0.02, T:0.58
Consensus pattern (21 bp):
TCACTCTATTTCTTTCACTTT
Found at i:67200202 original size:42 final size:44
Alignment explanation
Indices: 67200156--67200253 Score: 112
Period size: 44 Copynumber: 2.3 Consensus size: 44
67200146 CAGTTAGGGT
* *
67200156 CTTACAC-AAAATCA-AA-TACGGTGCCGATATCCCAGACATGGC
1 CTTACACGAAAATCATAAGT-CGATGCCAATATCCCAGACATGGC
* * * *
67200198 CTTACACGTAAATCATAAGTCGATGCCAATGTCCCAGACGTGGT
1 CTTACACGAAAATCATAAGTCGATGCCAATATCCCAGACATGGC
67200242 CTTACACGAAAA
1 CTTACACGAAAA
67200254 CACATATCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 7 0.15
43 6 0.13
44 32 0.70
45 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (44 bp):
CTTACACGAAAATCATAAGTCGATGCCAATATCCCAGACATGGC
Found at i:67205670 original size:35 final size:36
Alignment explanation
Indices: 67205623--67205748 Score: 161
Period size: 35 Copynumber: 3.5 Consensus size: 36
67205613 TATAATCTTC
*
67205623 AATGATATGCAATCTTAGATATGATACAATGTTAGA
1 AATGATATGCAATCTTAGATATGATACAATCTTAGA
67205659 AATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA
1 AATGATATGCAATCTTAGATATGATA--CAATCTTAGA
* *
67205696 TATGATA--CAATCTTAGATATGATTGCAATCTTAGA
1 AATGATATGCAATCTTAGATATGA-TACAATCTTAGA
*
67205731 TATGATATG-AATCTTAGA
1 AATGATATGCAATCTTAGA
67205749 AGATATGATT
Statistics
Matches: 81, Mismatches: 3, Indels: 12
0.84 0.03 0.12
Matches are distributed among these distances:
35 36 0.44
36 30 0.37
37 15 0.19
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (36 bp):
AATGATATGCAATCTTAGATATGATACAATCTTAGA
Found at i:67205675 original size:18 final size:18
Alignment explanation
Indices: 67205624--67205748 Score: 166
Period size: 18 Copynumber: 6.9 Consensus size: 18
67205614 ATAATCTTCA
67205624 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
* * *
67205643 ATGA-TACAATGTTAGAA
1 ATGATTGCAATCTTAGAT
67205660 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
67205678 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
67205697 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
67205714 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
67205732 ATGATATG-AATCTTAGA
1 ATGAT-TGCAATCTTAGA
67205749 AGATATGATT
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
17 30 0.32
18 41 0.44
19 23 0.24
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:67205683 original size:54 final size:54
Alignment explanation
Indices: 67205624--67205748 Score: 225
Period size: 54 Copynumber: 2.3 Consensus size: 54
67205614 ATAATCTTCA
*
67205624 ATGATATGCAATCTTAGATATGATACAATGTTAGAAATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGATTGCAATCTTAGAT
*
67205678 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGATTGCAATCTTAGAT
67205732 ATGATATG-AATCTTAGA
1 ATGATATGCAATCTTAGA
67205749 AGATATGATT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
53 9 0.13
54 60 0.87
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGATTGCAATCTTAGAT
Found at i:67205770 original size:23 final size:21
Alignment explanation
Indices: 67205674--67205771 Score: 65
Period size: 18 Copynumber: 5.0 Consensus size: 21
67205664 TTGCAATCTT
67205674 AGATATGATATGCAATCTT---
1 AGATATGATATG-AATCTTAGA
*
67205693 AGATATGATA-CAATCTTAG-
1 AGATATGATATGAATCTTAGA
67205712 --ATATGAT-TGCAATCTT---
1 AGATATGATATG-AATCTTAGA
67205728 AGATATGATATGAATCTTAGA
1 AGATATGATATGAATCTTAGA
*
67205749 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATG-AATCTTAGA
67205772 GATTTAATTT
Statistics
Matches: 64, Mismatches: 3, Indels: 20
0.74 0.03 0.23
Matches are distributed among these distances:
17 13 0.20
18 19 0.30
19 12 0.19
21 8 0.12
22 3 0.05
23 9 0.14
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (21 bp):
AGATATGATATGAATCTTAGA
Found at i:67212539 original size:11 final size:11
Alignment explanation
Indices: 67212515--67212576 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
67212505 CTTCTATTTC
*
67212515 AAAAAAAAAGG
1 AAAAAAAAAAG
*
67212526 AAAAAGAAAAG
1 AAAAAAAAAAG
67212537 AAAAAGAGAAAA-
1 AAAAA-A-AAAAG
*
67212549 AAATATAAAAAG
1 AAA-AAAAAAAG
67212561 AAAAAAAAAAG
1 AAAAAAAAAAG
67212572 AAAAA
1 AAAAA
67212577 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
11 30 0.71
12 7 0.17
13 5 0.12
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:67212549 original size:29 final size:27
Alignment explanation
Indices: 67212515--67212576 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 27
67212505 CTTCTATTTC
*
67212515 AAAAAAAAAGGAAAAAGAAAAGAAAAAGAG
1 AAAAAAATA-GAAAAAGAAAA-AAAAA-AG
*
67212545 AAAAAAATATAAAAAGAAAAAAAAAAG
1 AAAAAAATAGAAAAAGAAAAAAAAAAG
67212572 AAAAA
1 AAAAA
67212577 TGGAGAGGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 7 0.23
28 5 0.17
29 10 0.33
30 8 0.27
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (27 bp):
AAAAAAATAGAAAAAGAAAAAAAAAAG
Found at i:67213877 original size:205 final size:205
Alignment explanation
Indices: 67213516--67214679 Score: 1870
Period size: 205 Copynumber: 5.7 Consensus size: 205
67213506 GCAGATCTGG
*
67213516 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
67213581 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGACGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
67213646 AGAACAAATCGAAGTTTTGCATCTCCATTTCAACGGAGAGTAGATACATAGTAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
67213711 AGATGTTTATA
195 AGATGTTTATA
*
67213722 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
67213787 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAAA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
67213852 GAACAAATCGAAGTCTGGTATCTCCATTTCGGCGAAGAGTAGATACATAGCAGATCTAAGCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
67213917 GATGTTTATA
196 GATGTTTATA
67213927 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
67213992 ATTTGGCTTTCACGTGTTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
67214057 GAACAAATCAAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
67214122 GATGTTTATA
196 GATGTTTATA
67214132 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
67214197 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
67214262 GAACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATGTAAACTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
67214327 GATGTTTATA
196 GATGTTTATA
* * * *
67214337 CTGAATCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATATCTT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
67214402 ATTTGGCTTTCATGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
67214467 GAACAAATCAAAGTCTGGCATCTCCATTTCGATGGAGAGCAGATACATAGCAGATCTAACCTTTA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
67214532 GATG-----A
196 GATGTTTATA
* *
67214537 CTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * *
67214602 ATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTTAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
67214667 GAAGAAATTGAAG
131 GAACAAATCGAAG
67214680 AAACAGATTT
Statistics
Matches: 895, Mismatches: 63, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
200 130 0.15
205 758 0.85
206 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
GATGTTTATA
Found at i:67215001 original size:261 final size:261
Alignment explanation
Indices: 67214536--67215029 Score: 679
Period size: 261 Copynumber: 1.9 Consensus size: 261
67214526 CCTTTAGATG
* * * * *
67214536 ACTGAAGCATATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGCA
* * * * * * * *
67214601 GATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTTAG
66 GATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAA
* * *
67214666 AGAAGAAATTGAAGAAACAGATTTGGCGTCTCTGTATTCAGCGGAGAGCAGATCGAAGATATCAA
131 AAAAGAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCAGCGGAGAGCAGATCAAAGATATCAA
67214731 CAGGACAGTCATAAGTTTACAA-GAAGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATT
196 CAGGACAGTCATAAGTTTACAATG-AGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATT
67214795 TT
260 TT
* *
67214797 ACTGAAGTAGATCCAAGATGATTTGGCATCCTTGTG-TTCACAAGGAGCAAATCGAAGACACAGC
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTT-ACAAGGAACAAATCGAAGACACAGC
*
67214861 AGATTTGGCTTTCACGTGATTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTATATTGTCA
65 AGATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCA
* * * * *
67214926 AAAAATAAATCGAAGAAGCAGATTTGGCGTCTCTGTGTTC-GATGGAGAGCAGATCAAAGATATT
130 AAAAAGAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCAG-CGGAGAGCAGATCAAAGATATC
* * * * *
67214990 AACATGACAGTCTTGAGTTTCCAATGAGCAGATTGAAGAC
194 AACAGGACAGTCATAAGTTTACAATGAGCAGATTAAAGAC
67215030 CATGATTCGA
Statistics
Matches: 201, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
260 3 0.01
261 197 0.98
262 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (261 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGCA
GATTTGGCTTTCACGTGATTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAA
AAAAGAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCAGCGGAGAGCAGATCAAAGATATCAA
CAGGACAGTCATAAGTTTACAATGAGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATTT
T
Found at i:67215333 original size:19 final size:19
Alignment explanation
Indices: 67215309--67215412 Score: 155
Period size: 17 Copynumber: 5.7 Consensus size: 19
67215299 ATAATCTTCA
67215309 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
67215328 ATGATA--CAATCTTAGAA
1 ATGATATGCAATCTTAGAT
67215345 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67215363 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
67215382 ATGATA--CAATCTTATAT
1 ATGATATGCAATCTTAGAT
67215399 ATGATATGCAATCT
1 ATGATATGCAATCT
67215413 AAAAAGATAT
Statistics
Matches: 77, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
17 31 0.40
18 15 0.19
19 31 0.40
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:67215381 original size:54 final size:55
Alignment explanation
Indices: 67215309--67215412 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 55
67215299 ATAATCTTCA
67215309 ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGATATGCAATCTTAGAT
* *
67215363 ATGATATGCAATCTTAGATATGATACAATCTTATATATGATATGCAATCT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGATATGCAATCT
67215413 AAAAAGATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 39 0.83
55 8 0.17
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (55 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAAATGATATGCAATCTTAGAT
Found at i:67217821 original size:29 final size:27
Alignment explanation
Indices: 67217760--67217828 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 27
67217750 CAAAGAAAAC
67217760 AAAATAAAATAAAAAGGAAAAATAAAT
1 AAAATAAAATAAAAAGGAAAAATAAAT
**
67217787 AGAAATAAAATGAAAAAGGATCTAATGAAA-
1 A-AAATAAAAT-AAAAAGGA-AAAAT-AAAT
67217817 AAAATAAAATAA
1 AAAATAAAATAA
67217829 GGTCACTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 1 0.03
28 11 0.31
29 17 0.47
30 4 0.11
31 3 0.08
ACGTcount: A:0.72, C:0.01, G:0.10, T:0.16
Consensus pattern (27 bp):
AAAATAAAATAAAAAGGAAAAATAAAT
Found at i:67222325 original size:30 final size:30
Alignment explanation
Indices: 67222291--67222386 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
67222281 ATTTATCTAG
*
67222291 ATATTAAAATGAGATATTAAATTTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTA
* * * **
67222321 ATATTTATCT-AGATAGTATTTTATTAATTTA
1 ATATTAATATGAGATATTA-AAT-TTAATTTA
*
67222352 ATATTAATATGAGATATTTAATTTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTA
67222382 ATATT
1 ATATT
67222387 TATCTTGGCA
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 7 0.14
30 21 0.41
31 17 0.33
32 6 0.12
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (30 bp):
ATATTAATATGAGATATTAAATTTAATTTA
Found at i:67222348 original size:31 final size:29
Alignment explanation
Indices: 67222313--67222417 Score: 111
Period size: 31 Copynumber: 3.4 Consensus size: 29
67222303 GATATTAAAT
*
67222313 TTAATTTAATATTTATCTAGATAGTATTTTA
1 TTAATTTAATATTTATCT-GACA-TATTTTA
* * * *
67222344 TTAATTTAATATTAATATGAGATATTTAA
1 TTAATTTAATATTTATCTGACATATTTTA
*
67222373 TTTAATTTAATATTTATCTTGGCAATATTTTA
1 -TTAATTTAATATTTATC-TGAC-ATATTTTA
67222405 TTAATTTAATATT
1 TTAATTTAATATT
67222418 AATGTGATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
29 6 0.10
30 18 0.29
31 31 0.50
32 7 0.11
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (29 bp):
TTAATTTAATATTTATCTGACATATTTTA
Found at i:67222364 original size:61 final size:61
Alignment explanation
Indices: 67222291--67222420 Score: 206
Period size: 61 Copynumber: 2.1 Consensus size: 61
67222281 ATTTATCTAG
* * *
67222291 ATATTAAAATGAGATATTAAATTTAATTTAATATTTATCTAGATAGTATTTTATTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGACAATATTTTATTAATTTA
* * *
67222352 ATATTAATATGAGATATTTAATTTAATTTAATATTTATCTTGGCAATATTTTATTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGACAATATTTTATTAATTTA
67222413 ATATTAAT
1 ATATTAAT
67222421 GTGATTAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (61 bp):
ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGACAATATTTTATTAATTTA
Found at i:67228475 original size:6 final size:6
Alignment explanation
Indices: 67228466--67228503 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
67228456 AAATAACTTT
67228466 TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA TT
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA TT
67228504 GTTATTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TTATAA
Found at i:67231547 original size:28 final size:29
Alignment explanation
Indices: 67231506--67231560 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
67231496 ATTTAATATT
67231506 TAAAAAGTAAAT-AACTAAATTCTTAAAAA
1 TAAAAAGTAAATAAACTAAATT-TTAAAAA
* *
67231535 TAAAAA-TACATAAATTAAATTTTAAA
1 TAAAAAGTAAATAAACTAAATTTTAAA
67231561 TTTATGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (29 bp):
TAAAAAGTAAATAAACTAAATTTTAAAAA
Found at i:67232882 original size:17 final size:17
Alignment explanation
Indices: 67232860--67232894 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
67232850 AACCACCAAC
67232860 ACACCAGATTGTGGTTT
1 ACACCAGATTGTGGTTT
67232877 ACACCAGATTGTGGTTT
1 ACACCAGATTGTGGTTT
67232894 A
1 A
67232895 ACTACCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (17 bp):
ACACCAGATTGTGGTTT
Found at i:67235730 original size:46 final size:44
Alignment explanation
Indices: 67235634--67235834 Score: 156
Period size: 46 Copynumber: 4.4 Consensus size: 44
67235624 ATACCGATGC
* * * *
67235634 CATGTCTTACACTAGCTT-AGCTCGTAGTCGATGCATGTCTCAGA
1 CATGTCTTACACTAGCTTCATCTCG-AGGCGATGCATGTCCCAAA
*
67235678 CATGTCTTACACTGGCTTACATCTCGAGGCTGATGCATGTCCCAAA
1 CATGTCTTACACTAGCTT-CATCTCGAGGC-GATGCATGTCCCAAA
* * *
67235724 CATGTCTTACACTAGCTCTCGTCTC-ACTGCCGATGACATGTCCCGAA
1 CATGTCTTACACTAGCT-TCATCTCGA--GGCGATG-CATGTCCCAAA
* * * * * *
67235771 CATGGTCTTACACTAGCTCTCGTAAT-GTGGCCAATGCATGTCCTAGA
1 CAT-GTCTTACACTAGCT-TCAT-CTCGAGG-CGATGCATGTCCCAAA
67235818 CATGTCTTACACTAGCT
1 CATGTCTTACACTAGCT
67235835 CACAGTAGTC
Statistics
Matches: 130, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
44 17 0.13
45 4 0.03
46 57 0.44
47 28 0.22
48 23 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (44 bp):
CATGTCTTACACTAGCTTCATCTCGAGGCGATGCATGTCCCAAA
Found at i:67235811 original size:47 final size:45
Alignment explanation
Indices: 67235710--67235835 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 45
67235700 CTCGAGGCTG
* *
67235710 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCACTGCCG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAT-ACTGCCA
* *
67235756 ATGACATGTCCCGAACATGGTCTTACACTAGCTCTCGTA-ATGTGGCCA
1 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTATA-CT-GCCA
* *
67235804 ATGCATGTCCTAGACATGTCTTACACTAGCTC
1 ATGCATGTCCCAAACATGTCTTACACTAGCTC
67235836 ACAGTAGTCC
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
46 19 0.28
47 25 0.36
48 25 0.36
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTATACTGCCA
Found at i:67242495 original size:47 final size:47
Alignment explanation
Indices: 67242444--67242637 Score: 316
Period size: 47 Copynumber: 4.1 Consensus size: 47
67242434 GATTTTATGA
*
67242444 GATGAATGTGAACATGCATATATGGGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
67242491 GATGAATGTGAACATGCATGTACGTGATAAGGTCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
67242538 GATGAATGTGAACATACATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
67242585 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
67242632 GATGAA
1 GATGAA
67242638 CGTGGAAGTG
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:67242540 original size:22 final size:21
Alignment explanation
Indices: 67242514--67242634 Score: 66
Period size: 22 Copynumber: 5.2 Consensus size: 21
67242504 ATGCATGTAC
67242514 GTGATAAGGTCGAATGGCCAAT
1 GTGATAAGGT-GAATGGCCAAT
* * *
67242536 GTGATGAATGTGAACAT-ACATATAT
1 GTGAT-AAGGTG-A-ATGGC-CA-AT
67242561 GTGATAAGGCTGAATGGCCAAT
1 GTGATAAGG-TGAATGGCCAAT
* *
67242583 GTGATGAATGTGAACAT-GCATATAT
1 GTGAT-AAGGTG-A-ATGGC-CA-AT
67242608 GTGATAAGGTAGAATGGCCAAT
1 GTGATAAGGT-GAATGGCCAAT
67242630 GTGAT
1 GTGAT
67242635 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 28
0.66 0.09 0.25
Matches are distributed among these distances:
22 22 0.29
23 18 0.24
24 18 0.24
25 17 0.23
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (21 bp):
GTGATAAGGTGAATGGCCAAT
Found at i:67242562 original size:25 final size:25
Alignment explanation
Indices: 67242487--67242612 Score: 83
Period size: 25 Copynumber: 5.3 Consensus size: 25
67242477 CGAATGGCCA
*
67242487 ATGTGATGAATGTGAACATGCATGT
1 ATGTGATGAATGTGAACATGCATAT
* * *
67242512 ACGTGAT-AAGGTCG-A-ATGGC-CA-
1 ATGTGATGAATGT-GAACAT-GCATAT
*
67242534 ATGTGATGAATGTGAACATACATAT
1 ATGTGATGAATGTGAACATGCATAT
* *
67242559 ATGTGAT-AAGGCTG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
67242581 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
67242606 ATGTGAT
1 ATGTGAT
67242613 AAGGTAGAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 28
0.64 0.11 0.24
Matches are distributed among these distances:
22 16 0.22
23 17 0.23
24 18 0.24
25 23 0.31
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:67242670 original size:47 final size:46
Alignment explanation
Indices: 67242472--67242677 Score: 159
Period size: 47 Copynumber: 4.4 Consensus size: 46
67242462 TATATGGGAT
* ** * *
67242472 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATGTACGTGAT-
1 AAGGCCGAATGGCCAATGTGATGAATGTG-A-ATGTACATATGTGGTG
* ** *
67242519 AAGGTCGAATGGCCAATGTGATGAATGTGAACATACATATAT-GTG
1 AAGGCCGAATGGCCAATGTGATGAATGTGAATGTACATATGTGGTG
* * * *
67242564 ATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAT-
1 --AAGGCCGAATGGCCAATGTGATGAATGTG-A-ATGTACATATGTGGTG
** *
67242613 AAGGTAGAATGGCCAATGTGATGAACGTGGAAGTGTACATATGTGGTG
1 AAGGCCGAATGGCCAATGTGATGAATGT-GAA-TGTACATATGTGGTG
*
67242661 AA-GCCGAATGGCTAATG
1 AAGGCCGAATGGCCAATG
67242678 CGAAATGTGT
Statistics
Matches: 124, Mismatches: 26, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
44 1 0.01
45 5 0.04
46 2 0.02
47 104 0.84
48 4 0.03
49 7 0.06
50 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (46 bp):
AAGGCCGAATGGCCAATGTGATGAATGTGAATGTACATATGTGGTG
Found at i:67242715 original size:46 final size:46
Alignment explanation
Indices: 67242651--67242879 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
67242641 GGAAGTGTAC
* * *
67242651 ATATGTGGTGAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
67242697 ATATGAGGTAAAGTCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
67242743 ATATGAGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
67242789 ATATGAGGTAAAACCGAATGGCTAATGAGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * **
67242835 ATATGAGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
67242880 TGTATATATA
Statistics
Matches: 168, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 168 1.00
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:67245450 original size:55 final size:53
Alignment explanation
Indices: 67245338--67245735 Score: 323
Period size: 55 Copynumber: 7.5 Consensus size: 53
67245328 AACTTACCAT
* * * * *
67245338 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACTTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATCAA
* *
67245391 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * * * *
67245446 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATGAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
* * ***
67245500 TGCCATGCCTTGGCATGGTCTTACAT-G-A--TATCCTTATCTTAC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
** * *
67245546 TGCCATGTTCC-AAACATGGTATTACATGGTATCCTTGT-CTTAT-GAACTCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTT-TCCTTATAGAACTCATCAA
* * * *
67245600 TTCCATGTCTTGACATGGTCTTACTTGGGACCTTTTCCTTATAGCAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * * * * *
67245655 TGCCATGTCTTGACATGGTCTTACAAGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
67245709 TGCCATGCCTTGACATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
67245736 ATATCCTTAT
Statistics
Matches: 273, Mismatches: 51, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
46 9 0.03
47 12 0.04
48 4 0.01
49 10 0.04
51 2 0.01
52 14 0.05
53 56 0.21
54 75 0.27
55 87 0.32
56 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
Found at i:67245525 original size:54 final size:54
Alignment explanation
Indices: 67245338--67245743 Score: 361
Period size: 54 Copynumber: 7.6 Consensus size: 54
67245328 AACTTACCAT
* * * * * *
67245338 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACTTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* ** *
67245391 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
67245446 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATGAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* **
67245500 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
** * * * *
67245546 TGCCATGTTCC-AAACATGGTATTACATGGTATCCTTGTCTTAT-GAACTCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * * ** *
67245600 TTCCATGTCTTGACATGGTCTTACTTGGGA-CCTTTTCCTTATAGCAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
67245655 TGCCATGTCTTGACATGGTCTTACAAGATTTCCTTGCCTTATAGAACTTATAAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
67245709 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
67245744 ATCTTACCAA
Statistics
Matches: 286, Mismatches: 49, Indels: 35
0.77 0.13 0.09
Matches are distributed among these distances:
46 9 0.03
47 22 0.08
48 4 0.01
49 3 0.01
51 2 0.01
52 8 0.03
53 56 0.20
54 91 0.32
55 87 0.30
56 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:67245713 original size:209 final size:209
Alignment explanation
Indices: 67245350--67245796 Score: 770
Period size: 209 Copynumber: 2.1 Consensus size: 209
67245340 CCATGTCTTG
* * *
67245350 ACATGGTCTTACGTGGTATCCTT-ACTTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTC-TTATGAACTCACCAATGCCATGCCTTGACATGGTCTTA
* *
67245414 CATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCC
65 CATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGACATGGTCTTACAAGATTTCC
* *
67245479 TTGCCTTATAGAACTTATGAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCA
130 TTGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCA
67245544 AATGCCATGTTCCAA
195 AATGCCATGTTCCAA
* * *
67245559 ACATGGTATTACATGGTATCCTTGTCTTATGAACTCACCAATTCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
*
67245624 TTGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGACATGGTCTTACAAGATTTCCT
66 ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGACATGGTCTTACAAGATTTCCT
67245689 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
*
67245754 ATGTCATGTTCCAA
196 ATGCCATGTTCCAA
67245768 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
67245797 CCAAATGCCA
Statistics
Matches: 224, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
209 223 1.00
210 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (209 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
ATGGGACCTTTTCCTTATAGCAACTCATCAATGCCATGTCTTGACATGGTCTTACAAGATTTCCT
TGCCTTATAGAACTTATAAATGCCATGCCTTGACATGGTCTTACATGATATCCTTATCTTACCAA
ATGCCATGTTCCAA
Found at i:67245773 original size:47 final size:47
Alignment explanation
Indices: 67245721--67245843 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
67245711 CCATGCCTTG
* * *
67245721 ACATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
67245768 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
*
67245815 ACATGGTCTTACATGGTAGCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
67245844 GTACCAATGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAA
Found at i:67254372 original size:27 final size:27
Alignment explanation
Indices: 67254330--67254383 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
67254320 GTGTCATGTG
* *
67254330 AAATTGAATGACAAATTATTGTTACAT
1 AAATTGAATGACAAATTACTATTACAT
**
67254357 AAATTGAATGTTAAATTACTATTACAT
1 AAATTGAATGACAAATTACTATTACAT
67254384 GGGTTGTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.39
Consensus pattern (27 bp):
AAATTGAATGACAAATTACTATTACAT
Found at i:67254712 original size:49 final size:50
Alignment explanation
Indices: 67254630--67254876 Score: 275
Period size: 49 Copynumber: 5.0 Consensus size: 50
67254620 ATCTATTATG
* * *
67254630 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
67254680 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCT-TTCCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACG-TGTACCAGATAA-TT
* * * * **
67254730 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* **
67254780 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
67254830 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
67254877 CCTTGTCTAC
Statistics
Matches: 163, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 79 0.48
50 49 0.30
51 35 0.21
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:67258716 original size:3 final size:3
Alignment explanation
Indices: 67258708--67258749 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
67258698 TATATGTCAT
67258708 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67258750 GAAAGTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67262306 original size:48 final size:47
Alignment explanation
Indices: 67262254--67262461 Score: 137
Period size: 48 Copynumber: 4.5 Consensus size: 47
67262244 AGATCCCGTA
67262254 TAAGACCATGTCTGGGACATGGCATCGACATCAGTATGAGATCTCATG
1 TAAGACCATGTCTGGGACATGGCATCG-CATCAGTATGAGATCTCATG
* * * * * *
67262302 TAAGACCATATTTGGGATATGGCATTTGCATC-GATGTGAGGTC-C-TG
1 TAAGACCATGTCTGGGACATGGCA-TCGCATCAG-TATGAGATCTCATG
* * * * *
67262348 TATAAGACCATGGCTGGGACATGGCATCGGCACCAATATGAGA-CTTCGTA
1 --TAAGACCATGTCTGGGACATGGCATC-GCATCAGTATGAGATC-TCATG
* * * * *
67262398 TAAGACCATATCTAGGATATGGCATCG-AT-A-TGTG-G-TCCCATG
1 TAAGACCATGTCTGGGACATGGCATCGCATCAGTATGAGATCTCATG
*
67262440 TAAGACCATGTCCGGGACATGG
1 TAAGACCATGTCTGGGACATGG
67262462 GCTTGGAACT
Statistics
Matches: 121, Mismatches: 29, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
42 20 0.17
43 2 0.02
44 3 0.02
45 1 0.01
46 3 0.02
47 5 0.04
48 83 0.69
49 3 0.02
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGCATCAGTATGAGATCTCATG
Found at i:67270122 original size:48 final size:48
Alignment explanation
Indices: 67269939--67270240 Score: 216
Period size: 48 Copynumber: 6.5 Consensus size: 48
67269929 CTCATGTAAA
* * * *
67269939 ACCATGT-TCGGGACATGGCATTGGCATCAAAATGTGAT---GTATAAG
1 ACCATGTCT-GGGACATGGCATCGGCATCGATATGAGATCCCGTATAAG
* * * * * * * **
67269984 ACCATATCAGGGATATGGCTTTGGCATC-ATTAAGTGATTTCGTATAAG
1 ACCATGTCTGGGACATGGCATCGGCATCGA-TATGAGATCCCGTATAAG
*
67270032 ACCATGTCTAGGACATGGCATC-G-AT--A-A-GAGATCCCGTATAAG
1 ACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCCCGTATAAG
* * * *
67270074 ACTATGTCTGGGACATGGCATCGGCATCAATATGAGATCCCATGTAAG
1 ACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCCCGTATAAG
* * ** * * *
67270122 ACCATATCTGGGATATGGCATTAGTATCGATGTGAGGTCCCGTATAAG
1 ACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCCCGTATAAG
*
67270170 ACCATGTCTGGGACATGGCATCGGCA-CTGATATGAGA-CTTCGTATAAG
1 ACCATGTCTGGGACATGGCATCGGCATC-GATATGAGATC-CCGTATAAG
* * *
67270218 ACCATATCTGGGATATGGTATCG
1 ACCATGTCTGGGACATGGCATCG
67270241 ATATGTGGTT
Statistics
Matches: 203, Mismatches: 41, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
42 32 0.16
43 2 0.01
44 3 0.01
45 30 0.15
46 3 0.01
47 4 0.02
48 129 0.64
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
ACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCCCGTATAAG
Found at i:67271593 original size:42 final size:44
Alignment explanation
Indices: 67271491--67271649 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 44
67271481 TATGTGTTAT
* ** * *
67271491 CGTGTAAGACAACATCTGGGACGTTGGCATCGATTTTTTATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTA
*
67271535 CGTGTAAGACCATGTCTGGGACGTTGGCGTCG-TATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTA
* *
67271577 CGTGTAAGACTC-TGTCTAGGACAG-TGGCATTGATATTTGA-TTA
1 CGTGTAAGAC-CATGTCTGGGAC-GTTGGCATCGATATTTGATTTA
* * ** *
67271620 CATGTAAGATCACATCTGGGACATTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
67271650 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.30
43 38 0.40
44 28 0.30
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:67273103 original size:54 final size:54
Alignment explanation
Indices: 67273034--67273151 Score: 191
Period size: 54 Copynumber: 2.2 Consensus size: 54
67273024 ATGGTCACGC
* *
67273034 ACACACGGGCGTGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGGGCTAG
1 ACACACGGGCATGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGAGCTAG
** *
67273088 ACACACGGGCATGTGCCAGACCGTGTGGCCAAGTCAGTTTCGACCACGAGCTAG
1 ACACACGGGCATGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGAGCTAG
67273142 ACACACGGGC
1 ACACACGGGC
67273152 GTGTCTTGTG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.25, C:0.31, G:0.30, T:0.14
Consensus pattern (54 bp):
ACACACGGGCATGTGCCAGACCGTACGACCAAGTCAGTTTCGACCACGAGCTAG
Found at i:67280591 original size:18 final size:17
Alignment explanation
Indices: 67280568--67280626 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 17
67280558 TAGCCTATTT
67280568 CAGTAACAGAAATCAGTG
1 CAGTAACAG-AATCAGTG
*
67280586 CAGTAACCATG-ATCAATG
1 CAGTAA-CA-GAATCAGTG
*
67280604 CAGTAACAGTAATCAGTT
1 CAGTAACAG-AATCAGTG
67280622 CAGTA
1 CAGTA
67280627 TGCAAGCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
16 1 0.03
17 2 0.06
18 28 0.82
19 2 0.06
20 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (17 bp):
CAGTAACAGAATCAGTG
Found at i:67280933 original size:23 final size:23
Alignment explanation
Indices: 67280884--67280933 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
67280874 ACCCCATGCA
*
67280884 ATGCAACATAATATTATATATGG
1 ATGCAACATAATATTATACATGG
67280907 ATGCAACATACATA-TA-ACATGG
1 ATGCAACATA-ATATTATACATGG
67280929 CATGC
1 -ATGC
67280934 TCAAATACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.21
23 16 0.67
24 3 0.12
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (23 bp):
ATGCAACATAATATTATACATGG
Found at i:67281018 original size:27 final size:26
Alignment explanation
Indices: 67280995--67281084 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 26
67280985 GGTTATTACA
*
67280995 GTCATTTTACCCTACAGGGGTATTTTG
1 GTCATTTTACCCTACAGGGGTA-TTCG
* *
67281022 GTCATTCTACCCTATGAGGGTGT-TTCG
1 GTCATTTTACCCTA-CAGGG-GTATTCG
**
67281049 GTCATTTTACCCT-GTGAGGGTATTTCG
1 GTCATTTTACCCTACAG-GGGTA-TTCG
67281076 GTCATTTTA
1 GTCATTTTA
67281085 TCACATAAGA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
25 4 0.08
26 2 0.04
27 41 0.77
28 4 0.08
29 2 0.04
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.41
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGGTATTCG
Found at i:67286694 original size:48 final size:48
Alignment explanation
Indices: 67286641--67286819 Score: 205
Period size: 48 Copynumber: 3.7 Consensus size: 48
67286631 GTGTGAGTAT
* *
67286641 TGAGATCCCATATAAGACCATTTCTGGGATATGGCATCGGCATCAATA
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATCAATA
* * * * * * *
67286689 GGAGATCCCATGTAAGACCATATTTGGGATATGGCATTGGCATTAATA
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATCAATA
* * * * *
67286737 TGAGGTCCCACATAAGACCATGTCTGGGACATAGCATCGGCACCATTA
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATCAATA
** *
67286785 TGAGATTTCATGTAAGACCATGTCTGGGACATGGC
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGC
67286820 TTTGATATAA
Statistics
Matches: 107, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 107 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (48 bp):
TGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATCAATA
Found at i:67286790 original size:96 final size:96
Alignment explanation
Indices: 67286641--67286819 Score: 241
Period size: 96 Copynumber: 1.9 Consensus size: 96
67286631 GTGTGAGTAT
* * * * *
67286641 TGAGATCCCATATAAGACCATTTCTGGGATATGGCATCGGCATCAATAGGAGATCCCATGTAAGA
1 TGAGATCCCACATAAGACCATGTCTGGGACATAGCATCGGCACCAATAGGAGATCCCATGTAAGA
* *
67286706 CCATATTTGGGATATGGCATTGGCATTAATA
66 CCATATCTGGGACATGGCATTGGCATTAATA
* * * **
67286737 TGAGGTCCCACATAAGACCATGTCTGGGACATAGCATCGGCACCATTATGAGATTTCATGTAAGA
1 TGAGATCCCACATAAGACCATGTCTGGGACATAGCATCGGCACCAATAGGAGATCCCATGTAAGA
*
67286802 CCATGTCTGGGACATGGC
66 CCATATCTGGGACATGGC
67286820 TTTGATATAA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 70 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (96 bp):
TGAGATCCCACATAAGACCATGTCTGGGACATAGCATCGGCACCAATAGGAGATCCCATGTAAGA
CCATATCTGGGACATGGCATTGGCATTAATA
Found at i:67286937 original size:85 final size:85
Alignment explanation
Indices: 67286823--67287017 Score: 246
Period size: 85 Copynumber: 2.3 Consensus size: 85
67286813 ACATGGCTTT
* * * * * *
67286823 GATATAATATTTCCTGTAAGATCATGTCTGGGACATGGCATTGATACAATATTCCGTGTAAGACC
1 GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATCGATACAAGATTCCGTGTAAGACC
* *
67286888 ATATCTGGGCTATTGGCATC
66 ATAGCTAGGCTATTGGCATC
* * * ** * *
67286908 GGTATGATATTACGTGTAAGACCATGTCTGGGACATGGCATCGTTATGAGATTTCGTTTAAGACC
1 GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATCGATACAAGATTCCGTGTAAGACC
*
67286973 ATAGCTAGGCTATTGGCTTC
66 ATAGCTAGGCTATTGGCATC
67286993 GATATGATATTACATGTAAGACCAT
1 GATATGATATTACATGTAAGACCAT
67287018 ATTCGAGATA
Statistics
Matches: 93, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (85 bp):
GATATGATATTACATGTAAGACCATGTCTGGGACATGGCATCGATACAAGATTCCGTGTAAGACC
ATAGCTAGGCTATTGGCATC
Found at i:67286970 original size:42 final size:42
Alignment explanation
Indices: 67286749--67287017 Score: 220
Period size: 42 Copynumber: 6.2 Consensus size: 42
67286739 AGGTCCCACA
* * *
67286749 TAAGACCATGTCTGGGACATAGCATCGGCACCATTATGAGATTTCATG
1 TAAGACCATGTCTGGGACATGGCATC-G----A-TATGATATTTCGTG
* * * *
67286797 TAAGACCATGTCTGGGACATGGCTTTGATATAATATTTCCTG
1 TAAGACCATGTCTGGGACATGGCATCGATATGATATTTCGTG
* * ** *
67286839 TAAGATCATGTCTGGGACATGGCATTGATACAATATTCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGATATGATATTTCGTG
* * *
67286881 TAAGACCATATCTGGG-CTATTGGCATCGGTATGATATTACGTG
1 TAAGACCATGTCTGGGAC-A-TGGCATCGATATGATATTTCGTG
* * *
67286924 TAAGACCATGTCTGGGACATGGCATCGTTATGAGATTTCGTT
1 TAAGACCATGTCTGGGACATGGCATCGATATGATATTTCGTG
* * * *
67286966 TAAGACCATAG-CTAGG-CTATTGGCTTCGATATGATATTACATG
1 TAAGACCAT-GTCTGGGAC-A-TGGCATCGATATGATATTTCGTG
67287009 TAAGACCAT
1 TAAGACCAT
67287018 ATTCGAGATA
Statistics
Matches: 185, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.01
42 96 0.52
43 62 0.34
44 1 0.01
47 1 0.01
48 23 0.12
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATCGATATGATATTTCGTG
Found at i:67289811 original size:44 final size:44
Alignment explanation
Indices: 67289746--67289830 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
67289736 ATGATATCTC
* * *
67289746 AAATTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACGTA
1 AAATTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGTA
* * *
67289790 AAATTCCAT-GTTCATAACATGGCATTTAAAGAGGAATTGAC
1 AAATTCCATGGTT-ATAACATGGAAATTAAAGAAGAATTGAC
67289831 AGTTAAGGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (44 bp):
AAATTCCATGGTTATAACATGGAAATTAAAGAAGAATTGACGTA
Found at i:67290090 original size:47 final size:47
Alignment explanation
Indices: 67289969--67290090 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
67289959 GCATTGGCAC
* *
67289969 TAAGACAAGGATACCATGTAAGACCATATTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
*
67290016 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
* *
67290063 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
67290091 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
Found at i:67290269 original size:108 final size:108
Alignment explanation
Indices: 67290077--67290373 Score: 486
Period size: 108 Copynumber: 2.7 Consensus size: 108
67290067 ATAAGGATAT
* * * *
67290077 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
** *
67290142 ATGTCAAGACATGATATTGATGAGTTACTACAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTACAAGGAAAAGGTCC
* *
67290186 TATGTAAGACCATTCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
*
67290251 TGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTACAAGGAAAAGGTCC
*
67290294 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
67290359 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
67290374 ATGGTAAGTT
Statistics
Matches: 175, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
108 141 0.81
109 34 0.19
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTACAAGGAAAAGGTCC
Found at i:67290385 original size:53 final size:54
Alignment explanation
Indices: 67290069--67290373 Score: 361
Period size: 55 Copynumber: 5.6 Consensus size: 54
67290059 TTGGTAAGAT
* * * *
67290069 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * ** *
67290123 AAGGAAATCATGTAAGACCATGTCAAGACATGATATTGATGAGTTACTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* *
67290178 AAAGG-T-CCTATGTAAGACCAT-TCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACC-ATGTAAGACCATGT-CAAGACATGGCATTGATGAGTTCTATAAGGC
*
67290231 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * *
67290287 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
67290339 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
67290374 ATGGTAAGTT
Statistics
Matches: 214, Mismatches: 26, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
52 8 0.04
53 71 0.33
54 47 0.22
55 80 0.37
56 8 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:67294524 original size:21 final size:22
Alignment explanation
Indices: 67294498--67294539 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
67294488 GTGTATTTTG
67294498 ATGTTTAATGGTAGA-AAACAT
1 ATGTTTAATGGTAGATAAACAT
*
67294519 ATGTTTAATGTTAGATAAACA
1 ATGTTTAATGGTAGATAAACA
67294540 ATATTTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.36
Consensus pattern (22 bp):
ATGTTTAATGGTAGATAAACAT
Found at i:67294546 original size:21 final size:21
Alignment explanation
Indices: 67294501--67294546 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
67294491 TATTTTGATG
*
67294501 TTTAATGGTAGAAAACATATG
1 TTTAATGGTAGAAAACATATA
*
67294522 TTTAATGTTAGATAAACA-ATA
1 TTTAATGGTAGA-AAACATATA
67294543 TTTA
1 TTTA
67294547 CAAAGTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (21 bp):
TTTAATGGTAGAAAACATATA
Found at i:67294643 original size:26 final size:26
Alignment explanation
Indices: 67294613--67294664 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
67294603 AATTTGTAGA
67294613 AAAGTGTGAATAAATGAAAAATGTGG
1 AAAGTGTGAATAAATGAAAAATGTGG
*
67294639 AAAGTGTGAATAAATGAAAATTGTGG
1 AAAGTGTGAATAAATGAAAAATGTGG
67294665 GCTTTTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.27, T:0.25
Consensus pattern (26 bp):
AAAGTGTGAATAAATGAAAAATGTGG
Found at i:67296648 original size:20 final size:20
Alignment explanation
Indices: 67296617--67296670 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
67296607 CACGGCCTGC
*
67296617 CCACACGAGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
*
67296637 CCACATGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
67296657 CCACACGGGCGTGT
1 CCACACGGGCGTGT
67296671 GACCCCTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.24, C:0.37, G:0.26, T:0.13
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAA
Found at i:67301560 original size:26 final size:26
Alignment explanation
Indices: 67301531--67301638 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
67301521 TGGTACAAAT
67301531 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
67301557 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67301583 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67301609 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67301635 TGAT
1 TGAT
67301639 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67307376 original size:25 final size:25
Alignment explanation
Indices: 67307348--67307395 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
67307338 CGTGGAAGAA
67307348 AATTCTTAGATTTGGTTGCAAAGCC
1 AATTCTTAGATTTGGTTGCAAAGCC
67307373 AATTCTTAGATTTGGTTGCAAAG
1 AATTCTTAGATTTGGTTGCAAAG
67307396 TCAAGTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (25 bp):
AATTCTTAGATTTGGTTGCAAAGCC
Found at i:67320781 original size:20 final size:19
Alignment explanation
Indices: 67320741--67320782 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
67320731 TGTAAGTCTC
**
67320741 TTTGTTTTGTTTTTTTTTT
1 TTTGTTTTGTTTTTTCCTT
67320760 TTTGTTGTTGTTTTTTCCTT
1 TTTGTT-TTGTTTTTTCCTT
67320780 TTT
1 TTT
67320783 TATTTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (19 bp):
TTTGTTTTGTTTTTTCCTT
Found at i:67322799 original size:34 final size:34
Alignment explanation
Indices: 67322761--67322830 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
67322751 ACAACTTTTG
* *
67322761 TAAAAGGTGTTAGCATGAAAACACCTAAAAGGAC
1 TAAAAGGTGTTAGCATAAAAACACATAAAAGGAC
*
67322795 TAAAAGGTGTTAGCATAAAAACATATAAAAGGAC
1 TAAAAGGTGTTAGCATAAAAACACATAAAAGGAC
67322829 TA
1 TA
67322831 TTTTGCATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.50, C:0.11, G:0.19, T:0.20
Consensus pattern (34 bp):
TAAAAGGTGTTAGCATAAAAACACATAAAAGGAC
Found at i:67323472 original size:46 final size:46
Alignment explanation
Indices: 67323422--67323543 Score: 122
Period size: 46 Copynumber: 2.6 Consensus size: 46
67323412 GAGTGATAGC
* *
67323422 GTAAGACATGTCAGGGATATGCATCGGTTTCGAGACG-TAAGCCAGT
1 GTAAGACATGTCAGGGATATGCATCGGCTACGAGACGAT-AGCCAGT
* * * *
67323468 GTAAGACATGTCTA-GGACATGCATCAGCTACGAGATGATAGTCAGT
1 GTAAGACATGTC-AGGGATATGCATCGGCTACGAGACGATAGCCAGT
* *
67323514 GTAACACCATGTCTGGGATATGGCATCGGC
1 GTAAGA-CATGTCAGGGATAT-GCATCGGC
67323544 ACCCTACCCC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
46 41 0.67
47 13 0.21
48 7 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GTAAGACATGTCAGGGATATGCATCGGCTACGAGACGATAGCCAGT
Found at i:67325334 original size:51 final size:51
Alignment explanation
Indices: 67325255--67325495 Score: 276
Period size: 50 Copynumber: 4.8 Consensus size: 51
67325245 GATAATAACA
* **
67325255 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGT-ATCGG
* * * * *
67325306 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGA-CCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGTATCGG
* *
67325356 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGTATCGG
* * * * * *
67325406 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGA-CATGATCTTA-AGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCT-CTCGTATCGG
67325456 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
67325496 TCTTTACCCA
Statistics
Matches: 163, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 90 0.55
51 71 0.44
52 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGTATCGG
Found at i:67325461 original size:101 final size:101
Alignment explanation
Indices: 67325254--67325498 Score: 336
Period size: 101 Copynumber: 2.4 Consensus size: 101
67325244 TGATAATAAC
**
67325254 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* * * *
67325319 TCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
65 TCCCAGACATGGTCTTACAGGGGACATATCATCTAGG
* *
67325356 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
67325419 TCCCAGACATGGTCTTACAGGGGACATGATC-T-TAAGG
65 TCCCAGACATGGTCTTACAGGGGACAT-ATCATCT-AGG
* *
67325456 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
67325499 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
99 2 0.02
100 49 0.38
101 78 0.60
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (101 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACATATCATCTAGG
Found at i:67325614 original size:13 final size:13
Alignment explanation
Indices: 67325593--67325624 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
67325583 GCTTGGATCA
*
67325593 TCATCAAATAAAT
1 TCATAAAATAAAT
67325606 TCATAAAATAAAT
1 TCATAAAATAAAT
67325619 TCATAA
1 TCATAA
67325625 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:67325871 original size:30 final size:30
Alignment explanation
Indices: 67325836--67325893 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
67325826 CCTCGACTCT
* *
67325836 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTACCCCTA
* *
67325866 AACTTTTACATAATTACATTTTTACCCC
1 AACTTTTACAAAATTACAATTTTACCCC
67325894 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTACCCCTA
Found at i:67329026 original size:50 final size:51
Alignment explanation
Indices: 67328949--67329077 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
67328939 GACCATGGCA
*
67328949 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
67329000 A-AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATTAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
67329050 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
67329078 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:67329091 original size:31 final size:31
Alignment explanation
Indices: 67329053--67329201 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
67329043 ACAAATGACA
67329053 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
67329084 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
67329115 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
67329146 AGTGAAAAATGGTAGATCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
67329177 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
67329202 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:67329289 original size:47 final size:46
Alignment explanation
Indices: 67329219--67329341 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 46
67329209 AAGTGATTTC
* * *
67329219 CGTATAAGACCATATCTGGGATATGGCATCTGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
67329265 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
67329312 CGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
67329342 GATATATGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:67329376 original size:42 final size:43
Alignment explanation
Indices: 67329313--67329427 Score: 155
Period size: 42 Copynumber: 2.7 Consensus size: 43
67329303 TATGTGATTC
* *
67329313 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTAGGCTATGGCATCGATTATATGAAGAT
*
67329355 GTGTAAGACCATAGCTAGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTAGGCTATGGCATCGATTATATGAAGAT
* *
67329397 GTGTAAGACCATAG-TTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTAG-GCTATGGCATCGA
67329428 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
41 3 0.05
42 61 0.94
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTAGGCTATGGCATCGATTATATGAAGAT
Found at i:67335862 original size:93 final size:93
Alignment explanation
Indices: 67335703--67335873 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
67335693 GGATGGTTGA
* * * *
67335703 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
*
67335768 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
67335796 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
67335861 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67335874 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67335880 original size:46 final size:45
Alignment explanation
Indices: 67335707--67335881 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
67335697 GGTTGAGCAT
* * * *
67335707 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AACGC
* * * * * *
67335753 CCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAAATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACAACGC
*
67335798 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATACGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AACGC
*
67335846 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67335882 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.03
46 66 0.62
47 32 0.30
48 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAACGC
Found at i:67343985 original size:46 final size:47
Alignment explanation
Indices: 67343908--67344224 Score: 342
Period size: 46 Copynumber: 6.9 Consensus size: 47
67343898 TTATCTTTGA
* * * * ** *
67343908 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACCCATTTTC-TGC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTCATGT
* * *
67343954 CATGCTGCTATGGTATC-TTCTAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTC-AACCATGGTCTTATACATTTTCATGT
* * * * **
67344000 TACGTTGCCATGGTATCTTTCAACCATGGTTTTATTCA-TTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTCATGT
*
67344046 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTCATGT
* *
67344092 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTCATGT
* * * *
67344138 CAGGTTGCCATGGTATCTTTCAACAATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTCATGT
* * *
67344184 CAGGTTGCCATGATATCTTTCAACCATGATCTTATACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTT
67344225 CATATCAAAG
Statistics
Matches: 238, Mismatches: 29, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
45 7 0.03
46 226 0.95
47 5 0.02
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTCATGT
Found at i:67344071 original size:92 final size:92
Alignment explanation
Indices: 67343913--67344225 Score: 385
Period size: 92 Copynumber: 3.4 Consensus size: 92
67343903 TTTGACATGA
* * * * * * * *
67343913 TGCCATAGTGTCTTTCAACTATGGTCTTACCCATTTTCTGCCATGCTGCTATGGTATC-TTCTAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTC-AA
* * *
67343977 CCATGGTCTTATTCATTTCATGTTACGT
65 CCATGGTCTTATACATTTCATATCACGT
* ** *
67344005 TGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
*
67344070 CATGGTCTTATACATTTCATATCATGT
66 CATGGTCTTATACATTTCATATCACGT
* * *
67344097 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* * *
67344162 AATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTATACATTTCATATCACGT
* * *
67344189 TGCCATGATATCTTTCAACCATGATCTTATACATTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
67344226 ATATCAAAGA
Statistics
Matches: 192, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
92 189 0.98
93 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATACATTTCATATCACGT
Found at i:67344161 original size:138 final size:138
Alignment explanation
Indices: 67343908--67344231 Score: 391
Period size: 138 Copynumber: 2.3 Consensus size: 138
67343898 TTATCTTTGA
* * * * ** ** *
67343908 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACCCATTTTC-TGCCATGCTGCTATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACA-TTTCATATCATGCTGCCATGGTATCT
** * * * * **
67343972 TCTAACCATGGTCTTATTCATTTCATGTTACGTTGCCATGGTATCTTTCAACCATGGTTTTATTC
65 TCTAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACAATGGTCTTACAC
* *
67344037 ATTTCCCGT
130 ATTTCACAT
*
67344046 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCATGCTGCCATGGTATCTT
*
67344111 -TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACAATGGTCTTACAC
66 CT-AACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACAATGGTCTTACAC
*
67344175 ATTTCATAT
130 ATTTCACAT
* * *
67344184 CAGGTTGCCATGATATCTTTCAACCATGATCTTATACATTTCATATCA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCA
67344232 AAGAGCACAC
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
137 5 0.03
138 154 0.97
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (138 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCATGCTGCCATGGTATCTT
CTAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACAATGGTCTTACACA
TTTCACAT
Found at i:67344225 original size:46 final size:46
Alignment explanation
Indices: 67343963--67344231 Score: 378
Period size: 46 Copynumber: 5.8 Consensus size: 46
67343953 CCATGCTGCT
* * * *
67343963 ATGGTATC-TTCTAACCATGGTCTTATTCATTTCATGTTACGTTGCC
1 ATGGTATCTTTC-AACCATGGTCTTATACATTTCATATCAGGTTGCC
* * *** *
67344009 ATGGTATCTTTCAACCATGGTTTTATTCATTTCCCGTCATGTTGCC
1 ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGTTGCC
*
67344055 ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCATGTTGCC
1 ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGTTGCC
*
67344101 ATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCC
1 ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGTTGCC
* *
67344147 ATGGTATCTTTCAACAATGGTCTTACACATTTCATATCAGGTTGCC
1 ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGTTGCC
* *
67344193 ATGATATCTTTCAACCATGATCTTATACATTTCATATCA
1 ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCA
67344232 AAGAGCACAC
Statistics
Matches: 205, Mismatches: 17, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
46 202 0.99
47 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (46 bp):
ATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGTTGCC
Found at i:67346069 original size:31 final size:29
Alignment explanation
Indices: 67346015--67346083 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 29
67346005 ATACTAATAA
*
67346015 AATAATAATAAATTATCTTATTAAA-ACATT
1 AATAA-AATAAATTATCTAATTAAATA-ATT
67346045 AATAAAATAATATTTATCTAATTAAATAATT
1 AATAAAATAA-A-TTATCTAATTAAATAATT
67346076 -ATAAAATA
1 AATAAAATA
67346084 TCAAAATATC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 5 0.14
30 14 0.40
31 15 0.43
32 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (29 bp):
AATAAAATAAATTATCTAATTAAATAATT
Found at i:67349712 original size:29 final size:29
Alignment explanation
Indices: 67349605--67349705 Score: 168
Period size: 29 Copynumber: 3.5 Consensus size: 29
67349595 TAGGTCACTA
67349605 AACTTTAATTTATTACGTTTTGGTCATTG
1 AACTTTAATTTATTACGTTTTGGTCATTG
*
67349634 AACTTTAATTTATT-CGTTTTGATCATTG
1 AACTTTAATTTATTACGTTTTGGTCATTG
* *
67349662 GACTTTAATTTATTACCTTTTGGTCATTG
1 AACTTTAATTTATTACGTTTTGGTCATTG
67349691 AACTTTAATTTATTA
1 AACTTTAATTTATTA
67349706 TATTTTGATC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
28 26 0.39
29 40 0.61
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (29 bp):
AACTTTAATTTATTACGTTTTGGTCATTG
Found at i:67354831 original size:3 final size:3
Alignment explanation
Indices: 67354819--67354873 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
67354809 GCATCTCCAT
* * * *
67354819 TTC TTC -TC TTC TTT TTC TTC TTC -TC CTC TTC TTA TTC TTC TTA TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
67354865 -TC TTC TTC T
1 TTC TTC TTC T
67354874 ACTGTTTTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
2 6 0.14
3 36 0.86
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:67354841 original size:17 final size:17
Alignment explanation
Indices: 67354819--67354859 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
67354809 GCATCTCCAT
* * *
67354819 TTCTTCTCTTCTTTTTC
1 TTCTTCTCCTCTTCTTA
67354836 TTCTTCTCCTCTTCTTA
1 TTCTTCTCCTCTTCTTA
67354853 TTCTTCT
1 TTCTTCT
67354860 TATTCTCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (17 bp):
TTCTTCTCCTCTTCTTA
Found at i:67354847 original size:20 final size:20
Alignment explanation
Indices: 67354819--67354871 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
67354809 GCATCTCCAT
*
67354819 TTCTTCTCTTCTTTTTCTTC
1 TTCTTCTCTTCTTATTCTTC
*
67354839 TTCTCCTCTTCTTATTCTTC
1 TTCTTCTCTTCTTATTCTTC
*
67354859 TTATTCTCTTCTT
1 TTCTTCTCTTCTT
67354872 CTACTGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (20 bp):
TTCTTCTCTTCTTATTCTTC
Found at i:67355187 original size:16 final size:16
Alignment explanation
Indices: 67355166--67355214 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
67355156 ATGCGTTTCC
67355166 CTCTTTTCTTT-TTCTT
1 CTCTTTTCTTTCTT-TT
*
67355182 CTCTTTCCTTTCTTTT
1 CTCTTTTCTTTCTTTT
* *
67355198 CTCTCTTCTTTATTTT
1 CTCTTTTCTTTCTTTT
67355214 C
1 C
67355215 CCTATCCTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 26 0.93
17 2 0.07
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (16 bp):
CTCTTTTCTTTCTTTT
Found at i:67355894 original size:19 final size:20
Alignment explanation
Indices: 67355872--67355913 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
67355862 AAAGCATAAG
*
67355872 AAGG-AAAAAAAAAGAAACA
1 AAGGAAAAAAAAAAGAAAAA
67355891 AAGGAAAAAAAAAAGAAAAA
1 AAGGAAAAAAAAAAGAAAAA
67355911 AAG
1 AAG
67355914 TCAATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (20 bp):
AAGGAAAAAAAAAAGAAAAA
Found at i:67359331 original size:28 final size:28
Alignment explanation
Indices: 67359300--67359355 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
67359290 TTTCTAATTA
* * *
67359300 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
67359328 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
67359356 TTTAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:67359401 original size:17 final size:17
Alignment explanation
Indices: 67359381--67359414 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
67359371 TATATTACTA
67359381 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
67359398 TTATTATCATATATTTT
1 TTATTATCATATATTTT
67359415 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:67359493 original size:20 final size:21
Alignment explanation
Indices: 67359465--67359504 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
67359455 TTTCTTTATA
*
67359465 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
67359485 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
67359505 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:67359845 original size:18 final size:18
Alignment explanation
Indices: 67359819--67359859 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
67359809 TACCATATTA
*
67359819 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
67359837 TATTACATACTATATTTT
1 TATTACATACTATATTTT
67359855 TATTA
1 TATTA
67359860 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:67360016 original size:21 final size:20
Alignment explanation
Indices: 67359966--67360027 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
67359956 TGCAAAATAC
67359966 TTATTATA-TTTTTATTATTT
1 TTATTATATTTTTTATTA-TT
67359986 TATATTATATTTTCTTA-TATT
1 T-TATTATATTTT-TTATTATT
*
67360007 TTATTCATATTATATTATTAT
1 TTATT-ATATT-TTTTATTAT
67360028 ACATAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
20 5 0.14
21 18 0.51
22 9 0.26
23 3 0.09
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTATATTTTTTATTATT
Found at i:67360021 original size:5 final size:5
Alignment explanation
Indices: 67359967--67360024 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
67359957 GCAAAATACT
* * * * *
67359967 TATTA TATTTT TATTA TTTTA TATTA TATTT TCTTA TATTT TATTCA TATTA
1 TATTA TA-TTA TATTA TATTA TATTA TATTA TATTA TATTA TATT-A TATTA
67360019 TATTA T
1 TATTA T
67360025 TATACATAAC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 33 0.80
6 8 0.20
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (5 bp):
TATTA
Found at i:67367425 original size:37 final size:37
Alignment explanation
Indices: 67367384--67367484 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
67367374 CAAATAGTCC
* *
67367384 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
67367421 CCACACGTAGTCATCGGGCCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
67367458 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
67367485 AAATATATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:67367685 original size:48 final size:48
Alignment explanation
Indices: 67367627--67367964 Score: 545
Period size: 48 Copynumber: 7.0 Consensus size: 48
67367617 ATATACACAC
* *
67367627 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
67367675 ATCTCATACATATTTCACACTAG-C-TTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
67367721 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
67367771 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
67367819 ATCTCATACATGTTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
67367867 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
67367915 ATCTCATACATATTTCACATTATCCATTCGGCTTTACCACATATTCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
67367963 AT
1 AT
67367965 ATATTTATCT
Statistics
Matches: 272, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
46 26 0.10
47 1 0.00
48 218 0.80
49 1 0.00
50 26 0.10
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:67376143 original size:206 final size:205
Alignment explanation
Indices: 67375781--67376335 Score: 840
Period size: 206 Copynumber: 2.7 Consensus size: 205
67375771 GCAGATCTGG
* * *
67375781 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACCAGGAACAAATCGAAGACATAACT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCT
* *
67375846 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATAATTTGGCATCTCTGTATTGTCAG
64 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
67375911 AGAGCAGATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
129 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
*
67375976 CAGATGATTAGA
194 CAGATGAGTAGA
*
67375988 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATTGAAATCATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAA-CATAGCTG
* * *
67376053 ATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
67376118 GAACAAATCGAATTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAGCCTTT
130 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
67376183 AGATGAGTAGA
195 AGATGAGTAGA
* * * * *
67376194 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTATTTACAACGAGCAAATCGAAAACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCG-AAACATAGCTG
* ** *
67376259 ATTTGGTTTTCGTGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
67376324 GAACAAATCGAA
130 GAACAAATCGAA
67376336 AAAGCAGATT
Statistics
Matches: 316, Mismatches: 30, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
205 1 0.00
206 305 0.97
207 10 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACATAGCTGA
TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCA
GATGAGTAGA
Found at i:67377896 original size:28 final size:28
Alignment explanation
Indices: 67377865--67377920 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
67377855 TTTCTAATTA
* * *
67377865 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
67377893 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
67377921 TTTAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:67377966 original size:17 final size:17
Alignment explanation
Indices: 67377946--67377979 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
67377936 TATATTACTA
67377946 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
67377963 TTATTATCATATATTTT
1 TTATTATCATATATTTT
67377980 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:67378016 original size:14 final size:14
Alignment explanation
Indices: 67377961--67378035 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
67377951 ATCCATTATT
*
67377961 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
67377976 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
67377992 TATTATATTATATA
1 TTTTATTTTATATA
67378006 TTTTATTTTATATA
1 TTTTATTTTATATA
*
67378020 -TTT-CTTTATATA
1 TTTTATTTTATATA
67378032 TTTT
1 TTTT
67378036 TTATAAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:67378027 original size:12 final size:11
Alignment explanation
Indices: 67378011--67378040 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
67378001 ATATATTTTA
67378011 TTTTATATATT
1 TTTTATATATT
67378022 TCTTTATATATT
1 T-TTTATATATT
67378034 TTTTATA
1 TTTTATA
67378041 AAATTGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:67378058 original size:20 final size:21
Alignment explanation
Indices: 67378030--67378068 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
67378020 TTTCTTTATA
*
67378030 TATTTTTTA-TAAAATTGTGT
1 TATTATTTACTAAAATTGTGT
*
67378050 TATTATTTACTAAATTTGT
1 TATTATTTACTAAAATTGT
67378069 AAATGGCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.59
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTGT
Found at i:67378412 original size:18 final size:18
Alignment explanation
Indices: 67378386--67378426 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
67378376 TACCATATTA
*
67378386 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
67378404 TATTACATACTATATTTT
1 TATTACATACTATATTTT
67378422 TATTA
1 TATTA
67378427 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:67378560 original size:21 final size:22
Alignment explanation
Indices: 67378536--67378596 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
67378526 GCAAAATACT
67378536 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
67378557 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
67378579 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
67378597 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:67380060 original size:16 final size:17
Alignment explanation
Indices: 67380023--67380062 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
67380013 TCCAAAACAT
*
67380023 TATTAAAAATGATAGAA
1 TATTAAAAATGATACAA
67380040 -A-TAAAAAT-ATACAA
1 TATTAAAAATGATACAA
67380054 TATTAAAAA
1 TATTAAAAA
67380063 ATGCTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (17 bp):
TATTAAAAATGATACAA
Found at i:67382466 original size:27 final size:26
Alignment explanation
Indices: 67382404--67382498 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 26
67382394 AATACTTTAG
* *
67382404 TTTACCAAATTACTAAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTC-A
* ** *
67382431 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTC-A
***
67382458 TTTACAAAATTACCATTTTACCCTCA
1 TTTACAAAATTACCAAAATACCCTCA
67382484 GTTTACAAAATTACC
1 -TTTACAAAATTACC
67382499 GTTTTACCCT
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (26 bp):
TTTACAAAATTACCAAAATACCCTCA
Found at i:67382503 original size:27 final size:27
Alignment explanation
Indices: 67382449--67382513 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
67382439 ATTACCAAAG
67382449 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
67382476 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCATTT
67382503 TACCCTCGATT
1 TACCCTCGATT
67382514 GTGAAATTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.06, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:67382575 original size:27 final size:27
Alignment explanation
Indices: 67382545--67382620 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
67382535 TGTAGGATAG
**
67382545 AATTACCAAAATACCAC-TGGTTTG-AGA
1 AATTACCAAAATACC-CTTAATTTGTA-A
*
67382572 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
67382599 AATTACCAAAATACCCTTAATT
1 AATTACCAAAATACCCTTAATT
67382621 AACAAAATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:67382627 original size:27 final size:27
Alignment explanation
Indices: 67382571--67382629 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
67382561 CTGGTTTGAG
* ***
67382571 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACCAAAATACCCTTAATTAACA
67382598 AAATTACCAAAATACCCTTAATTAACA
1 AAATTACCAAAATACCCTTAATTAACA
67382625 AAATT
1 AAATT
67382630 TTAGAAAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAATTAACA
Found at i:67383532 original size:31 final size:31
Alignment explanation
Indices: 67383494--67383572 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
67383484 TTTAACGGTT
67383494 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
67383525 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
67383556 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67383573 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:67383643 original size:42 final size:42
Alignment explanation
Indices: 67383596--67383687 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
67383586 TGACCCTTAG
* ** *
67383596 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
67383638 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
67383680 GCCCATTT
1 GCCCATTT
67383688 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Done.