Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 196 of 311
Found at i:67383863 original size:25 final size:25
Alignment explanation
Indices: 67383835--67383904 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
67383825 CTCTTTTAAT
67383835 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
67383860 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
67383885 AACTGGGGTAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
67383905 AGCACTTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:67384764 original size:27 final size:27
Alignment explanation
Indices: 67384703--67384766 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
67384693 GGCGTATTCA
*
67384703 TCATTTTACCATACAAGGGTTTTACGG
1 TCATTTTACCATACAAGGGCTTTACGG
* * *
67384730 TCACTTTACCCTACAGGGGCTTTACGG
1 TCATTTTACCATACAAGGGCTTTACGG
*
67384757 TCTTTTTACC
1 TCATTTTACC
67384767 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGCTTTACGG
Found at i:67384871 original size:27 final size:27
Alignment explanation
Indices: 67384820--67384871 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
67384810 GTAAATCTAC
*
67384820 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTCCAATAATTTTGT
* * *
67384847 AAACCAATGGTATTCCTATAGTTTT
1 AAACCAAGGGTATTCCAATAATTTT
67384872 AAAAAAAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTCCAATAATTTTGT
Found at i:67384934 original size:27 final size:26
Alignment explanation
Indices: 67384882--67384980 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 26
67384872 AAAAAAAGTC
*
67384882 AAGGGTATTTCT-GTAATTTTGTAAATT
1 AAGGGTATTT-TGGTAATTTT-CAAATT
67384909 AAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTT-CAAATT
* * * * *
67384936 GAGGGTGTCTCGGTAATTTCTCAAA-C
1 AAGGGTATTTTGGTAATTT-TCAAATT
*
67384962 CAGTGGTATTTTGGTAATT
1 AAG-GGTATTTTGGTAATT
67384981 CTATCCTACA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.05
27 54 0.93
28 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (26 bp):
AAGGGTATTTTGGTAATTTTCAAATT
Found at i:67385046 original size:27 final size:26
Alignment explanation
Indices: 67385016--67385103 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
67385006 TTTCACAGTC
67385016 GAGGGTAAAATGGTAATTTTGTAAACT
1 GAGGGTAAAATGGTAATTTTGTAAA-T
67385043 GAGGGTAAAATGGTAATTTTGTAAAT
1 GAGGGTAAAATGGTAATTTTGTAAAT
* * * *
67385069 CGAGGGTAAAACGATAATTCTATAAATT
1 -GAGGGTAAAATGGTAATTTTGTAAA-T
67385097 GAGGGTA
1 GAGGGTA
67385104 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.31
Consensus pattern (26 bp):
GAGGGTAAAATGGTAATTTTGTAAAT
Found at i:67385087 original size:54 final size:54
Alignment explanation
Indices: 67385014--67385130 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 54
67385004 AATTTCACAG
* * * * **
67385014 TCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAA
1 TCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGGTAATTTTACAAA
* *** *
67385068 TCGAGGGTAAAACGATAATTCTATAAATTGAGGGTACTTTGGTAATTTTACAAG
1 TCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGGTAATTTTACAAA
67385122 TCGAGGGTA
1 TCGAGGGTA
67385131 TTTCAGTAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (54 bp):
TCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATGGTAATTTTACAAA
Found at i:67390364 original size:30 final size:31
Alignment explanation
Indices: 67390294--67390376 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
67390284 TCAATCTCAA
67390294 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
67390324 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
67390354 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
67390377 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 27 0.55
31 22 0.45
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:67390625 original size:25 final size:25
Alignment explanation
Indices: 67390597--67390667 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
67390587 CTCTTTTAAT
*
67390597 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
67390622 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
67390647 AACTGGGGCAAAAACCCTTTT
1 AACTGGGGC-AAAGCCCTTTT
67390668 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 32 0.76
26 10 0.24
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:67395160 original size:77 final size:81
Alignment explanation
Indices: 67395040--67395222 Score: 227
Period size: 77 Copynumber: 2.3 Consensus size: 81
67395030 TTGAATGATG
*
67395040 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAT
67395103 TTGTGCGAG-TACTA-A
65 TTGTGCGAGTTACTATA
* * * **
67395118 TTCCGGG-TAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAT
67395180 TTGTGCGAGTTACTATA
65 TTGTGCGAGTTACTATA
* *
67395197 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67395223 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
76 1 0.01
77 44 0.49
78 21 0.23
79 10 0.11
80 14 0.16
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:67395229 original size:40 final size:40
Alignment explanation
Indices: 67395040--67395222 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
67395030 TTGAATGATG
* * * *
67395040 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67395080 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67395119 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67395157 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67395198 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67395223 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
37 19 0.15
38 16 0.13
39 12 0.10
40 69 0.55
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67395240 original size:80 final size:76
Alignment explanation
Indices: 67395093--67395255 Score: 195
Period size: 80 Copynumber: 2.1 Consensus size: 76
67395083 GGACTAAGAT
* **
67395093 CCGAAGGCATTTGTGCGAGTACTAATTCCGGGTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGAAGGCATTTGTGCGAGTACTAATACCGGGTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
67395158 CCGGGTTAAGTC
66 CC-GGTTAAATC
*
67395170 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAG-TACTAAT-ACCGGG-TAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
67395233 TATATCCGGTTAAATT
61 TAAATCCGGTTAAATC
67395249 CCGAAGG
1 CCGAAGG
67395256 TACGTGATTT
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
77 21 0.28
78 9 0.12
79 19 0.26
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTACTAATACCGGGTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGTTAAATC
Found at i:67403085 original size:35 final size:38
Alignment explanation
Indices: 67402976--67403152 Score: 168
Period size: 39 Copynumber: 4.6 Consensus size: 38
67402966 TGAATGATGT
* * *
67402976 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATAATC
1 CGGGTTAAGT-CCGAAGGCATTTGTGC-GAGTTAC-TAATC
**
67403016 CGGGTTAAGTCCGAAGGCATTTGTGTGCGAGTTACTCCT-
1 CGGGTTAAGTCCGAAGGCA-TT-TGTGCGAGTTACTAATC
67403055 CGGGTTAAGT-C-AAGGCATTTGTGCGAGTTACTAATC
1 CGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATC
*
67403091 CGGGTTAAGTCCCGAA-GCA-TTGTGCGAGTTACTATAAC
1 CGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-ATC
* *
67403129 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGT-CCGAAGGCATTTG
67403153 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 10, Indels: 20
0.80 0.07 0.14
Matches are distributed among these distances:
35 14 0.12
36 12 0.10
37 21 0.18
38 21 0.18
39 23 0.20
40 14 0.12
41 7 0.06
42 5 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (38 bp):
CGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATC
Found at i:67444099 original size:46 final size:46
Alignment explanation
Indices: 67444046--67444174 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
67444036 TGGTTGAGCA
*
67444046 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
67444092 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
67444138 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67444175 GCGGATTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:67450592 original size:14 final size:14
Alignment explanation
Indices: 67450573--67450602 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67450563 ACCCCTTCAT
*
67450573 TCCCTCATTCATCA
1 TCCCTCATCCATCA
67450587 TCCCTCATCCATCA
1 TCCCTCATCCATCA
67450601 TC
1 TC
67450603 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:67450902 original size:15 final size:15
Alignment explanation
Indices: 67450882--67450914 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67450872 AATGTTAGCT
67450882 TAATTTTATTTAAGC
1 TAATTTTATTTAAGC
67450897 TAATTTTATTTAAGC
1 TAATTTTATTTAAGC
67450912 TAA
1 TAA
67450915 GATGATTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (15 bp):
TAATTTTATTTAAGC
Found at i:67455658 original size:21 final size:21
Alignment explanation
Indices: 67455634--67455674 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
67455624 AAATTTTGTT
67455634 GAAATATCAGAATGGTGAATA
1 GAAATATCAGAATGGTGAATA
*
67455655 GAAATGTCAGAATGGTGAAT
1 GAAATATCAGAATGGTGAAT
67455675 TACTTCATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.27, T:0.24
Consensus pattern (21 bp):
GAAATATCAGAATGGTGAATA
Found at i:67464846 original size:47 final size:46
Alignment explanation
Indices: 67464735--67464861 Score: 136
Period size: 47 Copynumber: 2.7 Consensus size: 46
67464725 GGCTATTGTG
*
67464735 GGCTAGTGTAAGACATGTCTAGGACATGCATCAACCACCTTATGAGA
1 GGCTAGTGTAAGACATGTCTAGGACATGCATCGACCA-CTTATGAGA
* * *
67464782 GG-TAGTTTAACGCCATGTCTTGGACATGGCATCGA-CA-TTGA-GACGA
1 GGCTAGTGTAA-GACATGTCTAGGACAT-GCATCGACCACTT-ATGA-GA
67464828 GTGCTAGTGTAAGACATGTCTAGGACATGCATCG
1 G-GCTAGTGTAAGACATGTCTAGGACATGCATCG
67464862 GCCTCGAGAC
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
45 4 0.06
46 17 0.25
47 33 0.49
48 13 0.19
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (46 bp):
GGCTAGTGTAAGACATGTCTAGGACATGCATCGACCACTTATGAGA
Found at i:67475955 original size:46 final size:46
Alignment explanation
Indices: 67475897--67476115 Score: 178
Period size: 46 Copynumber: 4.7 Consensus size: 46
67475887 GGGCCATTGT
* * ***
67475897 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACATGA
* * * * *
67475943 GAGCCAGTGTAAGACCATGTCTTGGACATGGCATCGGCGTTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGACATGA
* * *
67475991 GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACAT-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC--GACATGA
* *
67476038 -AGCCAGTGTAAGACATGTCTGAGACATGCATCGG-CTACGAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGACATGA
* * *
67476081 GTGTCAGTGTAAGACCCTGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
67476116 AACATAGATA
Statistics
Matches: 140, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 15 0.11
45 14 0.10
46 58 0.41
47 27 0.19
48 26 0.19
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACATGA
Found at i:67477056 original size:25 final size:25
Alignment explanation
Indices: 67477021--67477069 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
67477011 GCCGTGTGTC
*
67477021 TCAGCCGTGTGAGGGACACTGCCTG
1 TCAGCCATGTGAGGGACACTGCCTG
67477046 TCAGCCATGTGAGGGACACTGCCT
1 TCAGCCATGTGAGGGACACTGCCT
67477070 AGCACACGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (25 bp):
TCAGCCATGTGAGGGACACTGCCTG
Found at i:67477400 original size:13 final size:13
Alignment explanation
Indices: 67477379--67477424 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
67477369 ATGGGACACG
*
67477379 CCCGTGTCCTACA
1 CCCGTGTCCCACA
*
67477392 CCTGTGTCCCACA
1 CCCGTGTCCCACA
67477405 CCCGTGTCCCACA
1 CCCGTGTCCCACA
67477418 CCCGTGT
1 CCCGTGT
67477425 GGAATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.13, C:0.48, G:0.17, T:0.22
Consensus pattern (13 bp):
CCCGTGTCCCACA
Found at i:67493935 original size:43 final size:42
Alignment explanation
Indices: 67493849--67493993 Score: 148
Period size: 43 Copynumber: 3.4 Consensus size: 42
67493839 TCCCGGAGAG
* * *
67493849 GGTCTTACATGAAATCGATTAACGATGCCAATGTCTTAGACAT
1 GGTCTTACATGTAATCGA-TAATGATGCCAATGTCCTAGACAT
* *
67493892 GGTCTTACATGTAATCGTATAATGATGCCAATGTCCCATACAT
1 GGTCTTACATGTAATCG-ATAATGATGCCAATGTCCTAGACAT
* * ** * *
67493935 GATATTACACATAATC-ACAATATAATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCGA-TA-ATGATGCCAATGTCCTAGACAT
67493978 GGTCTTACATGTAATC
1 GGTCTTACATGTAATC
67493994 TCATCTCGGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 79 0.96
44 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
GGTCTTACATGTAATCGATAATGATGCCAATGTCCTAGACAT
Found at i:67514942 original size:34 final size:34
Alignment explanation
Indices: 67514904--67514969 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
67514894 ATTTCAGTTA
* *
67514904 GGGCCTTAGCTCATTACAGTATCAGTATTAGTGT
1 GGGCCTTAGCCCATTACAGTATCAGTAATAGTGT
*
67514938 GGGCCTTAGCCCATTACAGTATTAGTAATAGT
1 GGGCCTTAGCCCATTACAGTATCAGTAATAGT
67514970 AAAGAATGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (34 bp):
GGGCCTTAGCCCATTACAGTATCAGTAATAGTGT
Found at i:67518056 original size:93 final size:93
Alignment explanation
Indices: 67517897--67518083 Score: 302
Period size: 93 Copynumber: 2.0 Consensus size: 93
67517887 TAAGTATAGG
* * *
67517897 TGAGGATCTTCAATAGGCAGTCCACTGAATTGGCCCACTATCTGAAGCATTTGGAACATGACTGG
1 TGAGGATCTTCAATAGGCAGTCCACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
*
67517962 CTTCAGCTCGAACTGTTGTGCCTCAATT
66 CTTCAGCTCGAACTATTGTGCCTCAATT
* * *
67517990 TGAGGATCTTCAGTAGGCATTCTACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
1 TGAGGATCTTCAATAGGCAGTCCACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
*
67518055 CTTTAGCTCGAACTATTGTGCCTCAATT
66 CTTCAGCTCGAACTATTGTGCCTCAATT
67518083 T
1 T
67518084 CAAGTCTCCT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 86 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (93 bp):
TGAGGATCTTCAATAGGCAGTCCACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
CTTCAGCTCGAACTATTGTGCCTCAATT
Found at i:67529712 original size:25 final size:25
Alignment explanation
Indices: 67529677--67529747 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
67529667 GGAGGTAATG
67529677 CAAAAGGGCTTTTACCCAGTTTA-C
1 CAAAAGGGCTTTTACCCAGTTTATC
**
67529701 CGAAAAGGGCTTTGCCCCAGTTTATC
1 C-AAAAGGGCTTTTACCCAGTTTATC
*
67529727 CAAAAGGG-ATTTACCCCAGTT
1 CAAAAGGGCTTTTA-CCCAGTT
67529748 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 3 0.08
25 34 0.87
26 2 0.05
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (25 bp):
CAAAAGGGCTTTTACCCAGTTTATC
Found at i:67530001 original size:29 final size:30
Alignment explanation
Indices: 67529968--67530048 Score: 103
Period size: 31 Copynumber: 2.7 Consensus size: 30
67529958 CATTTACAGT
*
67529968 AAAGGCTTTGGCCCAGTGATAT-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATAATAATGA
* *
67529997 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATAT-AATAATGA
*
67530028 AAAGGCTTCGGCCTAGT-ATAT
1 AAAGGCTTCGGCCCAGTGATAT
67530049 GTTGAGATTG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 20 0.44
30 3 0.07
31 22 0.49
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATAATAATGA
Found at i:67530032 original size:31 final size:29
Alignment explanation
Indices: 67529968--67530040 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 29
67529958 CATTTACAGT
* *
67529968 AAAGGCTTTGGCCCAGTGATATATAATGA
1 AAAGGCTTCGGCCCAGTGACATATAATGA
*
67529997 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACAT--ATAATGA
67530028 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
67530041 TAGTATATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
29 20 0.51
31 19 0.49
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (29 bp):
AAAGGCTTCGGCCCAGTGACATATAATGA
Found at i:67534335 original size:47 final size:46
Alignment explanation
Indices: 67534267--67534522 Score: 186
Period size: 47 Copynumber: 5.5 Consensus size: 46
67534257 TATGTGTGCT
*
67534267 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCC
* * * *
67534313 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCA-TTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACAT--GATGAGAGCC
* *
67534361 AGTGTAAGACATGTCTGGGACATGCAT-TAGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CCAC-ATGATG-AGAGCC
* * * * * *
67534407 AGTGTAAGACATGTCTAGAACATGCATCGGCTACATGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCC
* ** ** *
67534451 AGTGTAAGACCATGTCTGGGACATGGCAT-GAACTTAACATGAGAACC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATGATGAGAGCC
*
67534498 AGTGTAAGACCATGTCTTGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67534523 GTATCAGCAT
Statistics
Matches: 162, Mismatches: 32, Indels: 32
0.72 0.14 0.14
Matches are distributed among these distances:
44 11 0.07
45 17 0.10
46 55 0.34
47 57 0.35
48 22 0.14
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCC
Found at i:67534421 original size:46 final size:45
Alignment explanation
Indices: 67534267--67534522 Score: 191
Period size: 46 Copynumber: 5.5 Consensus size: 45
67534257 TATGTGTGCT
* *
67534267 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTCATGATGAGAGCC
* * * *
67534313 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GC-CTCATGATGAGAGCC
*
67534361 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGCCTC-ATGATG-AGAGCC
* * * * *
67534407 AGTGTAAGACATGTCTAGAACATGCATCGGCTACATGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCT-CATGATGAGAGCC
* * ** *
67534451 AGTGTAAGACCATGTCTGGGACATGGCAT-GAACTTAACATGAGAACC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG-CCTCATGATGAGAGCC
*
67534498 AGTGTAAGACCATGTCTTGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67534523 GTATCAGCAT
Statistics
Matches: 168, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
44 11 0.07
45 22 0.13
46 56 0.33
47 55 0.33
48 22 0.13
49 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCATGATGAGAGCC
Found at i:67535539 original size:28 final size:28
Alignment explanation
Indices: 67535499--67535554 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
67535489 ACACTGGGTA
*
67535499 GGACACGGGC-GTGTCATGGCCGTGTGAG
1 GGACACAGGCGGTGTCA-GGCCGTGTGAG
67535527 GGACACAGGCGTGTGTCAGGCCGTGTGA
1 GGACACAGGCG-GTGTCAGGCCGTGTGA
67535555 AAACCCCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 10 0.40
30 6 0.24
ACGTcount: A:0.16, C:0.21, G:0.45, T:0.18
Consensus pattern (28 bp):
GGACACAGGCGGTGTCAGGCCGTGTGAG
Found at i:67541752 original size:27 final size:27
Alignment explanation
Indices: 67541721--67541898 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67541711 TAAATTGTAC
67541721 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67541748 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67541774 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67541802 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67541830 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67541857 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67541884 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67541899 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67541835 original size:82 final size:81
Alignment explanation
Indices: 67541722--67541877 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67541712 AAATTGTACA
* *
67541722 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67541786 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67541803 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67541868 TGCGAGTTGA
65 TGCGAATTGA
67541878 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67541889 original size:82 final size:81
Alignment explanation
Indices: 67541718--67541898 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67541708 GATTAAATTG
* *
67541718 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67541783 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67541799 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67541863 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67541881 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67541899 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67544608 original size:22 final size:21
Alignment explanation
Indices: 67544573--67544613 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
67544563 GTTGTAATGT
67544573 TCACACGAGAGTGTTGCCCTTC
1 TCACACGAGAGTG-TGCCCTTC
* *
67544595 TCACACGGGCGTGTGCCCT
1 TCACACGAGAGTGTGCCCT
67544614 GTGTCACGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.15, C:0.34, G:0.27, T:0.24
Consensus pattern (21 bp):
TCACACGAGAGTGTGCCCTTC
Found at i:67550595 original size:27 final size:27
Alignment explanation
Indices: 67550565--67550736 Score: 168
Period size: 27 Copynumber: 6.3 Consensus size: 27
67550555 TACAGCGACT
*
67550565 AGTGTGCGATTTGACTATGTTGCACTA
1 AGTGTGCGATTTGACTATGTAGCACTA
** *
67550592 AGTGTGCGAAATGAATATG-ATGCACACTA
1 AGTGTGCGATTTGACTATGTA-G--CACTA
* **
67550621 AGTGTGCGAATTGAC-ATGCGGCACTA
1 AGTGTGCGATTTGACTATGTAGCACTA
67550647 AGTGTGCGAGTTTGACTATGTAGCACTA
1 AGTGTGCGA-TTTGACTATGTAGCACTA
* * *
67550675 AGTGTGAGATTTGATTACGTAGCACTA
1 AGTGTGCGATTTGACTATGTAGCACTA
* * * *
67550702 AGTGTGCGAGTTGATTATATAGCACTG
1 AGTGTGCGATTTGACTATGTAGCACTA
67550729 AGTGTGCG
1 AGTGTGCG
67550737 GACTCAATAT
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 14 0.12
27 68 0.56
28 21 0.17
29 18 0.15
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGTGTGCGATTTGACTATGTAGCACTA
Found at i:67558725 original size:27 final size:27
Alignment explanation
Indices: 67558694--67558871 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67558684 TAAATTGTAC
67558694 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67558721 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67558747 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67558775 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67558803 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67558830 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67558857 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67558872 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67558808 original size:82 final size:81
Alignment explanation
Indices: 67558695--67558850 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67558685 AAATTGTACA
* *
67558695 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67558759 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67558776 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67558841 TGCGAGTTGA
65 TGCGAATTGA
67558851 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67558862 original size:82 final size:81
Alignment explanation
Indices: 67558691--67558871 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67558681 GATTAAATTG
* *
67558691 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67558756 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67558772 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67558836 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67558854 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67558872 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67564531 original size:46 final size:46
Alignment explanation
Indices: 67564481--67564650 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
67564471 AGCATCCGAA
67564481 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAG
* * * * *
67564527 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G-A-CTGAG
* * *
67564574 CTCGTTGAGTTGAGTCTGAGTTTACTTATGGATGCGAACGCCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAG
* *
67564620 CTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67564651 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 54 0.55
47 24 0.24
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAG
Found at i:67564631 original size:93 final size:93
Alignment explanation
Indices: 67564472--67564643 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67564462 GGATGATTGA
*
67564472 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAGCTCATTGAGT
67564537 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67564565 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTTACTTATGGATGCGAACGCCTGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAGCTCATTGAGT
67564630 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67564644 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACTGAGCTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67572123 original size:46 final size:46
Alignment explanation
Indices: 67571976--67572146 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
67571966 TATGTGTGCT
* * *
67571976 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAT-GAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGGA-AGCC
* * * * * * *
67572022 AGTGTAAGACCATGTCTTGGACATGGCATCGACATTGAGACGGGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGGAAGCC
*
67572070 AGTGTAAGACATGTCTGGGACATTCATCGGCCTCGAGATGGAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGGAAGCC
*
67572116 AGTGTAAGACATGTCTGGAACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
67572147 TACATGATGT
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 54 0.53
47 26 0.26
48 19 0.19
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGGAAGCC
Found at i:67582505 original size:13 final size:13
Alignment explanation
Indices: 67582487--67582515 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67582477 TGTAAGTTTG
67582487 TTTGGTTTAACTC
1 TTTGGTTTAACTC
67582500 TTTGGTTTAACTC
1 TTTGGTTTAACTC
67582513 TTT
1 TTT
67582516 TTGCATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (13 bp):
TTTGGTTTAACTC
Found at i:67584544 original size:21 final size:20
Alignment explanation
Indices: 67584519--67584558 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
67584509 TTCCCCACAG
*
67584519 GGTGTGTTGGATGGTATGGGA
1 GGTGTGATGGATGG-ATGGGA
67584540 GGTGTGATGGATGGATGGG
1 GGTGTGATGGATGGATGGG
67584559 GTTGGGTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (20 bp):
GGTGTGATGGATGGATGGGA
Found at i:67586868 original size:15 final size:15
Alignment explanation
Indices: 67586848--67586876 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
67586838 ATGCCTTACA
67586848 CACTGTGTTATCAAT
1 CACTGTGTTATCAAT
67586863 CACTGTGTTATCAA
1 CACTGTGTTATCAA
67586877 GCAACAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (15 bp):
CACTGTGTTATCAAT
Found at i:67593369 original size:43 final size:40
Alignment explanation
Indices: 67593315--67593578 Score: 309
Period size: 40 Copynumber: 6.5 Consensus size: 40
67593305 CGGATGATAA
67593315 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
67593356 AACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATGAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
67593399 AACCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67593441 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67593481 CTGAGCTAAGTCCCGAATGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** * **
67593521 CCGGGCTAAGTCCCGAATACAGTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67593561 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67593579 TACTTGGTGT
Statistics
Matches: 196, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 15 0.08
40 103 0.53
41 2 0.01
42 4 0.02
43 72 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67598407 original size:24 final size:24
Alignment explanation
Indices: 67598378--67598428 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
67598368 TGATGACAAT
67598378 TGTTTGAGGTTCAGAAGTCGTTTG
1 TGTTTGAGGTTCAGAAGTCGTTTG
67598402 TGTTTGAGGTTCAGAAGTCGTTTG
1 TGTTTGAGGTTCAGAAGTCGTTTG
67598426 TGT
1 TGT
67598429 GTTCCAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.16, C:0.08, G:0.33, T:0.43
Consensus pattern (24 bp):
TGTTTGAGGTTCAGAAGTCGTTTG
Found at i:67601280 original size:43 final size:43
Alignment explanation
Indices: 67601219--67601423 Score: 271
Period size: 43 Copynumber: 4.9 Consensus size: 43
67601209 GAATATTCGG
67601219 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
67601262 ATGATAATCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67601305 ATGATAACCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
67601348 AT-AT--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * *
67601388 AT-AT--CTAGGCTAAGTCCCGAAGGCAGTTGAGCGAGT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67601424 AGCTATATCC
Statistics
Matches: 146, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
40 63 0.43
41 2 0.01
42 4 0.03
43 77 0.53
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (43 bp):
ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67601365 original size:40 final size:40
Alignment explanation
Indices: 67601226--67601447 Score: 261
Period size: 43 Copynumber: 5.4 Consensus size: 40
67601216 CGGATGATAA
67601226 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * *
67601267 AATCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATGAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
67601310 AACCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
67601352 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** * *
67601392 CTAGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67601432 CC-GGCTAAATCCCGAA
1 CCGGGCTAAGTCCCGAA
67601448 TGTACTTGGT
Statistics
Matches: 160, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 15 0.09
40 69 0.43
41 2 0.01
42 4 0.03
43 70 0.44
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67601429 original size:80 final size:82
Alignment explanation
Indices: 67601219--67601447 Score: 295
Period size: 80 Copynumber: 2.8 Consensus size: 82
67601209 GAATATTCGG
* * * * *
67601219 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATGATAATCGGGCCAAGTCCC
1 ATGAT-ACCAGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTAT-AT--CCGGGCTAAGTCCC
*
67601283 GAAGGCATTTGTGTGAGTTACT
61 GAAGGCATTTGTGCGAGTTACT
*
67601305 ATGATAACCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATATCCGGGCTAAGTCCCGAAG
1 ATGAT-ACCAGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATATCCGGGCTAAGTCCCGAAG
67601370 GCATTTGTGCGAGTTACT
65 GCATTTGTGCGAGTTACT
* *
67601388 AT-AT-CTAGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATATCC-GGCTAAATCCCGAA
1 ATGATACCAGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATATCCGGGCTAAGTCCCGAA
67601448 TGTACTTGGT
Statistics
Matches: 134, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
79 13 0.10
80 40 0.30
82 2 0.01
83 35 0.26
85 4 0.03
86 40 0.30
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (82 bp):
ATGATACCAGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCGAGTTACT
Found at i:67605439 original size:46 final size:48
Alignment explanation
Indices: 67605388--67605518 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 48
67605378 ATGTTTGGGC
*
67605388 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * *
67605435 -TCCGAACTTGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-AGG
*
67605480 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67605519 GTGGGTTACA
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 1 0.01
45 2 0.03
46 27 0.40
47 26 0.38
49 1 0.01
50 2 0.03
51 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:67618125 original size:14 final size:14
Alignment explanation
Indices: 67618093--67618124 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
67618083 TTTTTATCTC
67618093 ATTTTATTTTAGTT
1 ATTTTATTTTAGTT
67618107 ATTTTA-TTTAGTT
1 ATTTTATTTTAGTT
67618120 ATTTT
1 ATTTT
67618125 TTTCGTAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (14 bp):
ATTTTATTTTAGTT
Found at i:67620298 original size:13 final size:13
Alignment explanation
Indices: 67620280--67620306 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67620270 AAAGTAATTA
67620280 CACACGGGCGTGT
1 CACACGGGCGTGT
67620293 CACACGGGCGTGT
1 CACACGGGCGTGT
67620306 C
1 C
67620307 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:67632915 original size:80 final size:78
Alignment explanation
Indices: 67632831--67633002 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
67632821 GGACTAAGAT
*
67632831 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
67632894 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
67632911 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
67632976 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
67632990 CCGAAGGCATTTG
1 CCGAAGGCATTTG
67633003 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
79 38 0.47
80 37 0.46
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:67632993 original size:39 final size:39
Alignment explanation
Indices: 67632778--67633000 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
67632768 TTGAATGCTG
* * * * * *
67632778 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
67632818 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
67632858 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
67632898 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
67632938 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
67632977 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67633001 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 37 0.24
40 105 0.69
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:67633020 original size:79 final size:80
Alignment explanation
Indices: 67632858--67633034 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
67632848 AGATACAAGT
* * * *
67632858 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
67632923 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
67632938 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
67633002 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
67633017 TCC-GGTTAAATCCCGAAG
1 TCCGGGTTAAGTCCCGAAG
67633035 TACGTGATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 15 0.18
79 48 0.59
80 19 0.23
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:67640767 original size:40 final size:39
Alignment explanation
Indices: 67640730--67640906 Score: 189
Period size: 39 Copynumber: 4.5 Consensus size: 39
67640720 ATATCCGGAC
*
67640730 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAA-ATCCGGGT
* *
67640770 TAAGCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* *
67640809 TAAGTCCCGAAGGCATTCGTGCGAG-TCATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGGT
* * * *
67640849 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
67640888 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
67640907 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 65 0.55
40 54 0.45
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:67640819 original size:79 final size:78
Alignment explanation
Indices: 67640683--67640906 Score: 215
Period size: 79 Copynumber: 2.8 Consensus size: 78
67640673 TTGAATGCTG
* * * * * * *
67640683 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
67640746 TTGTGCGAG-A-TACAA
63 TTGTGCGAGCATTA-AA
* * *
67640761 GTTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 --TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCAT
*
67640825 TCGTGCGAGTCATTAAA
63 TTGTGCGAG-CATTAAA
* * *
67640842 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
67640907 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 88 0.72
80 28 0.23
81 4 0.03
82 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGCATTAAA
Found at i:67640924 original size:79 final size:80
Alignment explanation
Indices: 67640763--67640937 Score: 196
Period size: 79 Copynumber: 2.2 Consensus size: 80
67640753 AGATACAAGT
* * *
67640763 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
67640827 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
67640842 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
67640906 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
67640921 TCC-GGTTAAATCCCGAA
1 TCCGGGTTAAGTCCCGAA
67640938 AGTACGTGAT
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 14 0.17
79 59 0.73
80 8 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:67648486 original size:34 final size:34
Alignment explanation
Indices: 67648448--67648518 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
67648438 TCCCTAAATG
* *
67648448 ATTGCCTTGTTTTCTTGAAAAGCTTTCATATCAT
1 ATTGCCTTGTTCTCTTGAAAAGCTTTCATAACAT
*
67648482 ATTGCCTTGTTCTCTTGAAATGCTTTCATAACAT
1 ATTGCCTTGTTCTCTTGAAAAGCTTTCATAACAT
67648516 ATT
1 ATT
67648519 TAGGATAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.46
Consensus pattern (34 bp):
ATTGCCTTGTTCTCTTGAAAAGCTTTCATAACAT
Found at i:67654653 original size:23 final size:23
Alignment explanation
Indices: 67654635--67654755 Score: 124
Period size: 23 Copynumber: 5.3 Consensus size: 23
67654625 CAGCTCATTG
67654635 GAGCTTACCGTTTCAGCTCG-TA
1 GAGCTTACCGTTTCAGCTCGATA
* * *
67654657 TGAGCTTGCTG-TTCAACTCGATA
1 -GAGCTTACCGTTTCAGCTCGATA
* *
67654680 AAGCTTACTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTCGATA
* *
67654702 GAGCTTACCATTTCAACTCGATA
1 GAGCTTACCGTTTCAGCTCGATA
*
67654725 GAGCTTACCGTTTCATCTC-ATTA
1 GAGCTTACCGTTTCAGCTCGA-TA
67654748 GAGCTTAC
1 GAGCTTAC
67654756 TATTCATCAG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
22 35 0.42
23 48 0.58
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCGATA
Found at i:67654686 original size:45 final size:46
Alignment explanation
Indices: 67654636--67654755 Score: 142
Period size: 45 Copynumber: 2.7 Consensus size: 46
67654626 AGCTCATTGG
*
67654636 AGCTTACCGTTTCAGCTCG-TATGAGCTT-GC-TGTTCAACTCGATAA
1 AGCTTACCGTTTCAGCTCGATA-GAGCTTACCAT-TTCAACTCGATAA
* *
67654681 AGCTTACTG-TTCAGCTCGATAGAGCTTACCATTTCAACTCGATAG
1 AGCTTACCGTTTCAGCTCGATAGAGCTTACCATTTCAACTCGATAA
*
67654726 AGCTTACCGTTTCATCTC-ATTAGAGCTTAC
1 AGCTTACCGTTTCAGCTCGA-TAGAGCTTAC
67654756 TATTCATCAG
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
44 15 0.23
45 32 0.49
46 18 0.28
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (46 bp):
AGCTTACCGTTTCAGCTCGATAGAGCTTACCATTTCAACTCGATAA
Found at i:67659765 original size:26 final size:26
Alignment explanation
Indices: 67659722--67659800 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
67659712 ACCCTCAAAT
* *
67659722 TGACAAAATGATTGTTATGCCCCTATG
1 TGAC-AAATGACTATTATGCCCCTATG
67659749 TGACAAATGACTATTATGCCCCTATG
1 TGACAAATGACTATTATGCCCCTATG
*
67659775 TGACAAATGACTATTATGCCCTTATG
1 TGACAAATGACTATTATGCCCCTATG
67659801 AGATGTCTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 45 0.92
27 4 0.08
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (26 bp):
TGACAAATGACTATTATGCCCCTATG
Found at i:67660035 original size:22 final size:23
Alignment explanation
Indices: 67660010--67660052 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
67660000 TATCCCCACA
*
67660010 TGGAGTGT-AGGGCTGGATGGAG
1 TGGAGTGTAAAGGCTGGATGGAG
67660032 TGGAGTGTAAAGGCTGGATGG
1 TGGAGTGTAAAGGCTGGATGG
67660053 GTAGGATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.21, C:0.05, G:0.51, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAAAGGCTGGATGGAG
Found at i:67676878 original size:22 final size:23
Alignment explanation
Indices: 67676853--67676898 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67676843 CAACCAAATC
67676853 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
67676875 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
67676898 A
1 A
67676899 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:67676904 original size:23 final size:23
Alignment explanation
Indices: 67676860--67676904 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67676850 ATCAATTCAA
*
67676860 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
67676883 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
67676905 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:67682496 original size:11 final size:10
Alignment explanation
Indices: 67682478--67682535 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
67682468 TTCTCTGTTC
67682478 TTTTTCTTTA
1 TTTTTCTTTA
67682488 TTGTTTCTTTA
1 TT-TTTCTTTA
*
67682499 TTCTT-TTTA
1 TTTTTCTTTA
67682508 TTATTTCTTTTA
1 TT-TTTC-TTTA
*
67682520 TTTTACTTTA
1 TTTTTCTTTA
67682530 TATTTT
1 T-TTTT
67682536 TATATTATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 6 0.15
10 11 0.28
11 16 0.41
12 6 0.15
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.76
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:67682542 original size:32 final size:32
Alignment explanation
Indices: 67682480--67682551 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
67682470 CTCTGTTCTT
*
67682480 TTTC-TTTATTGTTTCTTTATTCTTTTTATTA
1 TTTCTTTTATTGTTACTTTATTCTTTTTATTA
67682511 TTTCTTTTATT-TTACTTTATAT-TTTTATATTA
1 TTTCTTTTATTGTTACTTTAT-TCTTTT-TATTA
67682543 TATT-TTTTA
1 T-TTCTTTTA
67682552 GTTATAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
31 16 0.44
32 18 0.50
33 2 0.06
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (32 bp):
TTTCTTTTATTGTTACTTTATTCTTTTTATTA
Found at i:67690882 original size:20 final size:18
Alignment explanation
Indices: 67690854--67690892 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
67690844 TGCTTATTAT
*
67690854 TTAAGAAATAATAATTATAA
1 TTAAAAAAT-ATAA-TATAA
67690874 TTAAAAAATATAATATAA
1 TTAAAAAATATAATATAA
67690892 T
1 T
67690893 AATATAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
TTAAAAAATATAATATAA
Found at i:67690918 original size:27 final size:26
Alignment explanation
Indices: 67690856--67690921 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
67690846 CTTATTATTT
*
67690856 AAGAAATAATAATTATAATTAAAAAA
1 AAGAAATAATAATTATAAGTAAAAAA
* *
67690882 TATAATATAATAA-TATAAAGTAAAATAA
1 AAGAA-ATAATAATTAT-AAGTAAAA-AA
67690910 AAGAAATAATAA
1 AAGAAATAATAA
67690922 AAAGAATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 6 0.19
27 21 0.66
28 5 0.16
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (26 bp):
AAGAAATAATAATTATAAGTAAAAAA
Found at i:67690942 original size:11 final size:10
Alignment explanation
Indices: 67690896--67690948 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
67690886 ATATAATAAT
*
67690896 ATAAAGTAAA
1 ATAAAGAAAA
67690906 ATAAAAGAAATA
1 AT-AAAGAAA-A
*
67690918 ATAAA-AAGA
1 ATAAAGAAAA
67690927 ATAAAGAAACA
1 ATAAAGAAA-A
67690938 ATAAAGAAAA
1 ATAAAGAAAA
67690948 A
1 A
67690949 GAACAAAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 6 0.17
10 8 0.22
11 19 0.53
12 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.13
Consensus pattern (10 bp):
ATAAAGAAAA
Found at i:67690957 original size:31 final size:31
Alignment explanation
Indices: 67690896--67690958 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 31
67690886 ATATAATAAT
* *
67690896 ATAAAGTAAAATAAAAGAAATAATAAAAAGA
1 ATAAAGAAAAATAAAAGAAATAAGAAAAAGA
67690927 ATAAAGAAACAAT-AAAGAAA-AAGAACAAAGA
1 ATAAAGAAA-AATAAAAGAAATAAGAA-AAAGA
67690958 A
1 A
67690959 GTGGAATGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 4 0.14
31 21 0.75
32 3 0.11
ACGTcount: A:0.75, C:0.03, G:0.11, T:0.11
Consensus pattern (31 bp):
ATAAAGAAAAATAAAAGAAATAAGAAAAAGA
Found at i:67691912 original size:6 final size:6
Alignment explanation
Indices: 67691901--67691930 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
67691891 GTACCGCTAG
*
67691901 TGTTAC TGTTAC TGTTAT TGTTAC TGTTAC
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC
67691931 GGTGTATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.53
Consensus pattern (6 bp):
TGTTAC
Found at i:67707294 original size:203 final size:203
Alignment explanation
Indices: 67706939--67707334 Score: 747
Period size: 203 Copynumber: 2.0 Consensus size: 203
67706929 CTCATATAGT
67706939 CACTTATCATGTTAGTAATCAACTTCTAAAGGCAAATAGTCATATTAAAATTTAATACATATTCA
1 CACTTATCATGTTAGTAATCAACTTCTAAAGGCAAATAGTCATATTAAAATTTAATACATATTCA
67707004 CTGAAGTGCATAATCTCAATTATCGAAATAATATTTCATATACATATATTAATTATATAACCGAA
66 CTGAAGTGCATAATCTCAATTATCGAAATAATATTTCATATACATATATTAATTATATAACCGAA
* *
67707069 AATACCGCATAATATGTACACATATATAAGAGTTATTCATGACATACTAACTATTCATTCAATAA
131 AATACCGCATAATATATACACATATATAAGAGTTATTCAAGACATACTAACTATTCATTCAATAA
67707134 GCCAAATA
196 GCCAAATA
67707142 CACTTATCATGTTAGTAATCAACTTCTAAAGGCAAATAGTCATATTAAAATTTAATACATATTCA
1 CACTTATCATGTTAGTAATCAACTTCTAAAGGCAAATAGTCATATTAAAATTTAATACATATTCA
*
67707207 CTGAAGTGCATAATCTCAATTATCGAAATAATATTTCATATGCATATATTAATTATATAACCGAA
66 CTGAAGTGCATAATCTCAATTATCGAAATAATATTTCATATACATATATTAATTATATAACCGAA
* *
67707272 AATACCTCATCATATATACACATATATAAGAGTTATTCAAGACATACTAACTATTCATTCAAT
131 AATACCGCATAATATATACACATATATAAGAGTTATTCAAGACATACTAACTATTCATTCAAT
67707335 TTGCACCTTC
Statistics
Matches: 188, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
203 188 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (203 bp):
CACTTATCATGTTAGTAATCAACTTCTAAAGGCAAATAGTCATATTAAAATTTAATACATATTCA
CTGAAGTGCATAATCTCAATTATCGAAATAATATTTCATATACATATATTAATTATATAACCGAA
AATACCGCATAATATATACACATATATAAGAGTTATTCAAGACATACTAACTATTCATTCAATAA
GCCAAATA
Found at i:67720800 original size:73 final size:73
Alignment explanation
Indices: 67720681--67720842 Score: 324
Period size: 73 Copynumber: 2.2 Consensus size: 73
67720671 TAAAATCGAA
67720681 GCTCTCTTGTACACATAGTGGCCTTCACTTAGCATCACTCATGTGACCTAGCTCAATTGTACACA
1 GCTCTCTTGTACACATAGTGGCCTTCACTTAGCATCACTCATGTGACCTAGCTCAATTGTACACA
67720746 TAATTTTG
66 TAATTTTG
67720754 GCTCTCTTGTACACATAGTGGCCTTCACTTAGCATCACTCATGTGACCTAGCTCAATTGTACACA
1 GCTCTCTTGTACACATAGTGGCCTTCACTTAGCATCACTCATGTGACCTAGCTCAATTGTACACA
67720819 TAATTTTG
66 TAATTTTG
67720827 GCTCTCTTGTACACAT
1 GCTCTCTTGTACACAT
67720843 GGTGAACACT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.35
Consensus pattern (73 bp):
GCTCTCTTGTACACATAGTGGCCTTCACTTAGCATCACTCATGTGACCTAGCTCAATTGTACACA
TAATTTTG
Found at i:67721566 original size:30 final size:30
Alignment explanation
Indices: 67721532--67721592 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67721522 TCCTTAACTC
67721532 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67721562 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67721592 A
1 A
67721593 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67727123 original size:40 final size:40
Alignment explanation
Indices: 67727068--67727325 Score: 348
Period size: 40 Copynumber: 6.5 Consensus size: 40
67727058 CGGATGATAA
*
67727068 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
*
67727108 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
67727148 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
*
67727188 CCGGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* * *
67727228 CCGGGCTAGGTCTCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
67727268 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATAT
*
67727308 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67727326 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
39 18 0.09
40 184 0.91
41 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
Found at i:67735097 original size:40 final size:40
Alignment explanation
Indices: 67735042--67735297 Score: 330
Period size: 40 Copynumber: 6.5 Consensus size: 40
67735032 CGGATGATAA
*
67735042 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
*
67735082 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
67735122 CCGGGCTAAGT-CCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
*
67735161 CCGGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* * *
67735201 CCGGGCTAGGTCTCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
67735241 CCGGGCTAAGTCCCGAAGGCATTTGAGCGA--TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATAT
*
67735280 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67735298 TACTTGGTTT
Statistics
Matches: 200, Mismatches: 12, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
38 18 0.09
39 40 0.20
40 142 0.71
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
Found at i:67735245 original size:80 final size:79
Alignment explanation
Indices: 67735042--67735265 Score: 321
Period size: 79 Copynumber: 2.8 Consensus size: 79
67735032 CGGATGATAA
*
67735042 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGT-CCGAAGGCATTTGTG-TGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATT
67735105 TGTGCTAGTGACTAATT
63 TGTGCTAGTGACTAATT
*
67735122 CCGGGCTAAGTCCGAAGGCATTTGTGTGAGTTACTATATCCGGGATAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
67735187 G-TGAGTTACT-ATAT
66 GCT-AGTGACTAAT-T
* *
67735201 CCGGGCTAGGTCTCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTC-CGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
67735266 AGCGATAGCT
Statistics
Matches: 133, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
78 4 0.03
79 67 0.50
80 62 0.47
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTGACTAATT
Found at i:67735278 original size:119 final size:118
Alignment explanation
Indices: 67735042--67735297 Score: 326
Period size: 119 Copynumber: 2.2 Consensus size: 118
67735032 CGGATGATAA
67735042 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
* * *
67735107 TGCTAGTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGTGTGAGTTACTATAT
66 TGCTAGTGACTAATACCGGGCTAAGTCCGAAGGCATTTGAGCGAG-TACTATAT
* * * *
67735161 CCGGGATAAGTCCCGAAGGCATTTGTG-TGAGTTACT-ATATCCGGGCTAGGTCTCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATT
*
67735224 TGTG-TGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGA-TAGCTATAT
64 TGTGCT-AGTGACTAAT-ACCGGGCTAAGT-CCGAAGGCATTTGAGCGAGTA-CTATAT
*
67735280 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67735298 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
118 22 0.18
119 83 0.69
120 16 0.13
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
TGCTAGTGACTAATACCGGGCTAAGTCCGAAGGCATTTGAGCGAGTACTATAT
Found at i:67739353 original size:17 final size:17
Alignment explanation
Indices: 67739331--67739363 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67739321 CTAATTACTT
67739331 CTAATTAAAAATAATTA
1 CTAATTAAAAATAATTA
*
67739348 CTAATTAAAACTAATT
1 CTAATTAAAAATAATT
67739364 CAACTCACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
CTAATTAAAAATAATTA
Found at i:67743016 original size:40 final size:40
Alignment explanation
Indices: 67742961--67743217 Score: 348
Period size: 40 Copynumber: 6.5 Consensus size: 40
67742951 CGGATGATAA
*
67742961 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
*
67743001 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
67743041 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
*
67743081 CCGGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
67743121 CCGGGCTAGGT-CCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
67743160 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATAT
*
67743200 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67743218 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 55 0.27
40 147 0.72
41 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
Found at i:67750258 original size:39 final size:40
Alignment explanation
Indices: 67750201--67750377 Score: 222
Period size: 40 Copynumber: 4.5 Consensus size: 40
67750191 ATCCGGATAA
67750201 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-T
67750241 CCGGGCTAA-TCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-T
*
67750280 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATAT
* * * *
67750320 CCAGGCTAAGTTCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-CTATAT
*
67750360 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67750378 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
39 55 0.44
40 69 0.55
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:67750366 original size:79 final size:79
Alignment explanation
Indices: 67750201--67750377 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
67750191 ATCCGGATAA
* *
67750201 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAATCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAATCCCGAAGGCATTTGA
*
67750266 GCTAGTGACTAATT
66 GCGAGTGACTAATT
* *
67750280 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT-ATATCCAGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAAT-TCCAGGCTAA-TCCCGAAGGCATT
67750343 TGAGCGAGT-AGCT-ATAT
63 TGAGCGAGTGA-CTAAT-T
*
67750360 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67750378 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
78 3 0.03
79 60 0.69
80 24 0.28
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAATCCCGAAGGCATTTGA
GCGAGTGACTAATT
Found at i:67755920 original size:6 final size:6
Alignment explanation
Indices: 67755901--67756027 Score: 100
Period size: 6 Copynumber: 20.5 Consensus size: 6
67755891 GGGTTGTTAC
* *
67755901 AATCAG AA-CTAG AATCAG AATCAG AATCAA AATCAG -GTGACAG AATCAG
1 AATCAG AATC-AG AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG
* *
67755950 AATCAG AATCAG AATCAG TATCAGG TAA-CAG AATCAA AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCA-G -AATCAG AATCAG AATCAG AATCAG
* *
67755999 TATCAGG TAA-CAG AATCAAA AATCAG AAT
1 AATCA-G -AATCAG AATC-AG AATCAG AAT
67756028 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
5 6 0.06
6 73 0.75
7 15 0.15
8 3 0.03
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
AATCAG
Found at i:67755947 original size:31 final size:31
Alignment explanation
Indices: 67755911--67756027 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 31
67755901 AATCAGAACT
* *
67755911 AGAATCAGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAAAATCAGAATCAAAATCAGGTAAC
*
67755942 AGAATCAGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATC--AA--A--ATCAGGTAAC
**
67755979 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAAAATCAGGTAAC
67756010 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
67756028 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
31 34 0.45
32 11 0.15
33 2 0.03
35 2 0.03
37 26 0.35
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAAAATCAGGTAAC
Found at i:67756004 original size:37 final size:37
Alignment explanation
Indices: 67755913--67756027 Score: 143
Period size: 37 Copynumber: 3.2 Consensus size: 37
67755903 TCAGAACTAG
* * *
67755913 AATCAGAATCAGAATCAAAATCAGGTGACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
*
67755950 AATCAGAATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
67755987 AATCAGAATCAG--T----ATCAGGTAACAGAATCAAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATC-AA
67756019 AATCAGAAT
1 AATCAGAAT
67756028 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
31 16 0.22
32 11 0.15
35 1 0.01
37 45 0.62
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.18
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:67756207 original size:27 final size:26
Alignment explanation
Indices: 67756164--67756222 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
67756154 GTTCAGTTAT
* *
67756164 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTATGACAGAGCCACCAGA-A
67756191 CAGATATTATGGA-AGAGCCACCAGAA
1 CAGATATTAT-GACAGAGCCACCAGAA
67756217 CAGATA
1 CAGATA
67756223 AAATGGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 7 0.24
27 20 0.69
28 2 0.07
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGATATTATGACAGAGCCACCAGAA
Found at i:67756228 original size:26 final size:28
Alignment explanation
Indices: 67756177--67756237 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 28
67756167 ATATTGTGAC
* **
67756177 AGAGTCACCAGATACAGATATTATGG-A
1 AGAGCCACCAGATACAGATAAAATGGCA
67756204 AGAGCCACCAGA-ACAGATAAAATGGCA
1 AGAGCCACCAGATACAGATAAAATGGCA
67756231 A-AGCCAC
1 AGAGCCAC
67756238 TTAACAGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 17 0.57
27 13 0.43
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.13
Consensus pattern (28 bp):
AGAGCCACCAGATACAGATAAAATGGCA
Found at i:67756424 original size:22 final size:22
Alignment explanation
Indices: 67756396--67756460 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
67756386 GCAAATACGT
*
67756396 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
67756418 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
67756440 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
67756461 ACGGCTTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:67756944 original size:27 final size:27
Alignment explanation
Indices: 67756888--67757081 Score: 223
Period size: 27 Copynumber: 7.2 Consensus size: 27
67756878 GGGCAAAATG
* * * * *
67756888 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCC
* * * **
67756914 GTAATTCCACCTTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCC
67756941 GTAATTCTACCCTACAGGGGTATTT-C
1 GTAATTCTACCCTACAGGGGTATTTCC
*
67756967 GATAATTCTACCCTACAGGGGTA-TTGC
1 G-TAATTCTACCCTACAGGGGTATTTCC
*
67756994 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCC
*
67757022 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCC
*
67757049 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCC
67757076 GTAATT
1 GTAATT
67757082 TTTTAAATCG
Statistics
Matches: 150, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.10
27 132 0.88
28 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCC
Found at i:67756974 original size:54 final size:54
Alignment explanation
Indices: 67756888--67757081 Score: 266
Period size: 54 Copynumber: 3.6 Consensus size: 54
67756878 GGGCAAAATG
* * * * * * * *
67756888 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCTTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* *
67756941 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
67756994 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
67757049 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
67757082 TTTTAAATCG
Statistics
Matches: 126, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
53 15 0.12
54 110 0.87
55 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:67757016 original size:81 final size:81
Alignment explanation
Indices: 67756915--67757081 Score: 262
Period size: 81 Copynumber: 2.1 Consensus size: 81
67756905 GGTATCTCGG
* *
67756915 TAATTCCACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 TAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
67756980 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* * * *
67756996 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
1 TAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
* *
67757061 TACAGGGGTATTTCGG
66 TACAGGGGTATTGCGA
67757077 TAATT
1 TAATT
67757082 TTTTAAATCG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (81 bp):
TAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
TACAGGGGTATTGCGA
Found at i:67757105 original size:81 final size:81
Alignment explanation
Indices: 67756941--67757110 Score: 202
Period size: 81 Copynumber: 2.1 Consensus size: 81
67756931 GGGTATTTTA
*
67756941 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACA
* * ***
67757006 CTACAGGGGTATTTCG
66 ATACAGGGATAAAACG
* * * *
67757022 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAA--TTCTA
67757087 -AAT-C-GAGGATAAAACG
64 CAATACAG-GGATAAAACG
67757103 GTAATTCT
1 GTAATTCT
67757111 GTAAATCAAG
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
80 1 0.01
81 70 0.92
82 1 0.01
83 4 0.05
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACA
ATACAGGGATAAAACG
Found at i:67757149 original size:27 final size:26
Alignment explanation
Indices: 67757117--67757460 Score: 312
Period size: 27 Copynumber: 12.8 Consensus size: 26
67757107 TTCTGTAAAT
* *
67757117 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAA-A
* *** **
67757144 CGAGGGTATTTCCATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACA-AA
* ** *
67757171 CGAGGGTATTTCAGTAATTTCACAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
*
67757197 TC-AGGTTTATTTTGGTAATTTTACAAA
1 -CAAGG-GTATTTTGGTAATTTTACAAA
*
67757224 CTAAGGGTATTTTGATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
67757251 CCAGGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
67757278 CCAGTGGTATTTTGGTAATTTTATAAA
1 CAAG-GGTATTTTGGTAATTTTACAAA
*
67757305 CAAAGGGTATTTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* **
67757332 CCAGGGGTATTTTGGTAATTTTGTAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
67757359 CCAATGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* * *
67757386 CCAGGGGTATTTTGGTGATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
67757413 CCAAGGGTAGTTTAGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
67757440 CTAGAGGTATTTTGGTAATTT
1 CAAG-GGTATTTTGGTAATTT
67757461 GGTAAACTAA
Statistics
Matches: 262, Mismatches: 45, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
26 9 0.03
27 246 0.94
28 7 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
CAAGGGTATTTTGGTAATTTTACAAA
Found at i:67757467 original size:54 final size:54
Alignment explanation
Indices: 67757204--67757460 Score: 354
Period size: 54 Copynumber: 4.8 Consensus size: 54
67757194 AAATCAGGTT
* * * * *
67757204 TATTTTGGTAATTTTACAAACTA-AGGGTATTTTGATAATTTTACAAACCAGGGG
1 TATTTTAGTAATTTTACAAACCAGA-GGTATTTTGGTAATTTTATAAACCAAGGG
* * *
67757258 TATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTATAAACAAAGGG
1 TATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAAGGG
* * *
67757312 TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAATGG
1 TATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAAGGG
* * *
67757366 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGG
1 TATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAAGGG
* *
67757420 TAGTTTAGTAATTTTACAAACTAGAGGTATTTTGGTAATTT
1 TATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTT
67757461 GGTAAACTAA
Statistics
Matches: 182, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 182 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
TATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAAGGG
Found at i:67770027 original size:12 final size:12
Alignment explanation
Indices: 67770010--67770044 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
67770000 CTTATGGCAT
67770010 AAGCTCTAGCTG
1 AAGCTCTAGCTG
*
67770022 AAGCTCTAGCCG
1 AAGCTCTAGCTG
*
67770034 GAGCTCTAGCT
1 AAGCTCTAGCT
67770045 TCAGATTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (12 bp):
AAGCTCTAGCTG
Found at i:67776032 original size:13 final size:13
Alignment explanation
Indices: 67776014--67776038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67776004 GAATTACTAT
67776014 GTGTGAAAATTTC
1 GTGTGAAAATTTC
67776027 GTGTGAAAATTT
1 GTGTGAAAATTT
67776039 GATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:67777282 original size:42 final size:42
Alignment explanation
Indices: 67777167--67777283 Score: 112
Period size: 42 Copynumber: 2.8 Consensus size: 42
67777157 TACTTATGAT
* * ** *
67777167 TTACATGTAAGACCATGTTTGGGACATCAGTATCG-TATTTGA
1 TTACATGTAAGACCACGTCTGGGACATTGGCATCGATA-TTGA
* ** *
67777209 TCT-CGTGTAAGACCTTGTCTGGGACAATGGCATCGATATTGA
1 T-TACATGTAAGACCACGTCTGGGACATTGGCATCGATATTGA
*
67777251 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TTACATGTAAGACCACGTCTGGGACATTGGCAT
67777284 TGTATGAGCT
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.02
42 56 0.93
43 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACATTGGCATCGATATTGA
Found at i:67778022 original size:23 final size:23
Alignment explanation
Indices: 67777996--67778050 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
67777986 AGTTTATGGT
67777996 ATGAATTTGAATTATGATTTGGC
1 ATGAATTTGAATTATGATTTGGC
*
67778019 ATGACTTTGAATTATGATTTGGC
1 ATGAATTTGAATTATGATTTGGC
*
67778042 ATGATTTTG
1 ATGAATTTG
67778051 GTATGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.45
Consensus pattern (23 bp):
ATGAATTTGAATTATGATTTGGC
Found at i:67779655 original size:26 final size:26
Alignment explanation
Indices: 67779620--67779670 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
67779610 ATGTGAAAAG
*
67779620 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
67779646 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
67779671 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:67779681 original size:104 final size:104
Alignment explanation
Indices: 67779541--67779807 Score: 439
Period size: 104 Copynumber: 2.6 Consensus size: 104
67779531 TTGTATATAA
** *
67779541 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
67779606 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
67779645 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
67779709 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
67779749 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
67779808 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
103 24 0.16
104 127 0.84
105 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:67787130 original size:26 final size:26
Alignment explanation
Indices: 67787095--67787145 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
67787085 AATGTGAAAG
*
67787095 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
67787121 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
67787146 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:67787183 original size:103 final size:103
Alignment explanation
Indices: 67787018--67787281 Score: 442
Period size: 103 Copynumber: 2.6 Consensus size: 103
67787008 TTGTATATAA
** *
67787018 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
67787082 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
67787120 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
67787185 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
67787224 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCA
67787282 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
102 28 0.18
103 88 0.58
104 36 0.24
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:67794682 original size:26 final size:26
Alignment explanation
Indices: 67794647--67794698 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
67794637 AATGTGAAAG
*
67794647 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
67794673 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
67794699 TTCAGCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:67794727 original size:103 final size:104
Alignment explanation
Indices: 67794465--67794730 Score: 453
Period size: 104 Copynumber: 2.6 Consensus size: 104
67794455 TTGTATATAA
** * *
67794465 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
67794530 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
67794569 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
67794634 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
**
67794672 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
67794731 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
103 60 0.39
104 92 0.61
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:67806735 original size:16 final size:16
Alignment explanation
Indices: 67806710--67806742 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67806700 ACTTCCATTC
67806710 CAAGGAAATATGTCAT
1 CAAGGAAATATGTCAT
*
67806726 CAAGGGAATATGTCAT
1 CAAGGAAATATGTCAT
67806742 C
1 C
67806743 TGCCCCAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (16 bp):
CAAGGAAATATGTCAT
Found at i:67826612 original size:65 final size:65
Alignment explanation
Indices: 67826513--67826635 Score: 201
Period size: 65 Copynumber: 1.9 Consensus size: 65
67826503 GGTCACACGG
* *
67826513 CTGTATGACAGGTTGAGGCCATTTGGAGCTAAGTGACATGGTCGTGTTGTCAACTGATCACACAA
1 CTGTATGACAGGTTAAGGCCATTTGGAGCCAAGTGACATGGTCGTGTTGTCAACTGATCACACAA
* * *
67826578 CTGTATGACAGGTTAAGGCCGTTTGGAGCCAAGTGGCATGGTTGTGTTGTCAACTGAT
1 CTGTATGACAGGTTAAGGCCATTTGGAGCCAAGTGACATGGTCGTGTTGTCAACTGAT
67826636 GTCATGAAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (65 bp):
CTGTATGACAGGTTAAGGCCATTTGGAGCCAAGTGACATGGTCGTGTTGTCAACTGATCACACAA
Found at i:67827851 original size:25 final size:25
Alignment explanation
Indices: 67827787--67827853 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
67827777 GTGAGATGAT
*
67827787 AATGCTCACACGAGCTATGAATGTA
1 AATGCTCACACGAGTTATGAATGTA
*
67827812 AATGCTCACACGAGTTGTGAATGTA
1 AATGCTCACACGAGTTATGAATGTA
*
67827837 AATGCTCACATGAGTTA
1 AATGCTCACACGAGTTA
67827854 GGAAAATGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (25 bp):
AATGCTCACACGAGTTATGAATGTA
Found at i:67831383 original size:22 final size:22
Alignment explanation
Indices: 67831358--67831400 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
67831348 ATTATTAACG
*
67831358 TAATGAATTTTGATTAATTTTA
1 TAATAAATTTTGATTAATTTTA
67831380 TAATAAATTTTGATTAATTTT
1 TAATAAATTTTGATTAATTTT
67831401 TCTTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (22 bp):
TAATAAATTTTGATTAATTTTA
Found at i:67836063 original size:14 final size:14
Alignment explanation
Indices: 67836044--67836074 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67836034 GCATTAGAAC
*
67836044 TTTATTTTATTTTG
1 TTTATTTTACTTTG
67836058 TTTATTTTACTTTG
1 TTTATTTTACTTTG
67836072 TTT
1 TTT
67836075 TCTAGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.77
Consensus pattern (14 bp):
TTTATTTTACTTTG
Found at i:67843123 original size:15 final size:15
Alignment explanation
Indices: 67843103--67843144 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
67843093 GCTGTAAATG
67843103 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
67843118 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
67843133 GGATTTCCTTAT
1 GGATTTCCTTAT
67843145 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:67845762 original size:31 final size:31
Alignment explanation
Indices: 67845719--67845951 Score: 288
Period size: 31 Copynumber: 7.5 Consensus size: 31
67845709 GTGTACAATA
*
67845719 TGAAGAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
67845750 TGAAAAGTGGTAGCTTCAGATACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
67845781 TGAAAAGTGGTAGCTTCGGCTACTTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
67845812 TGAAAAGTAGTAGCTT-AGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCA-GCTACCTGATCAG
** * *
67845843 TGAAAAGTGGTAGCTTTGGCCAACTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * * * *
67845874 TGAAAAGTAGTAACCTCAGCTACCTAATTAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
67845905 TGGAAAGTGGTAGCTCCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
67845936 TGAATAGTGATAGCTT
1 TGAAAAGTGGTAGCTT
67845952 TGGCTATCGA
Statistics
Matches: 168, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
31 168 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:67845968 original size:29 final size:29
Alignment explanation
Indices: 67845935--67846029 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
67845925 TACCTGATCA
*
67845935 GTGAATAGTGATAGCTTTGGCTATCGAAT
1 GTGAAAAGTGATAGCTTTGGCTATCGAAT
* *
67845964 GTGAAAAGGGATAGCTTCGGCTATCGAAT
1 GTGAAAAGTGATAGCTTTGGCTATCGAAT
67845993 GTGAAAAGTGATAGCTTTGGCTATTC-AAT
1 GTGAAAAGTGATAGCTTTGGCTA-TCGAAT
67846022 GTGAAAAG
1 GTGAAAAG
67846030 GTTAGGTATA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 58 0.97
30 2 0.03
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (29 bp):
GTGAAAAGTGATAGCTTTGGCTATCGAAT
Found at i:67846060 original size:33 final size:33
Alignment explanation
Indices: 67846023--67846185 Score: 175
Period size: 33 Copynumber: 5.0 Consensus size: 33
67846013 CTATTCAATG
* *
67846023 TGAAAAGGTTAGGTATACTTTGTGTATATCACA
1 TGAAAAGGTTATGTATACTTTGTGTATACCACA
* * * * *
67846056 TGAAAAAGTTATGTACACTTTTTGTGTA-CACT
1 TGAAAAGGTTATGTATACTTTGTGTATACCACA
*
67846088 TGAAAAGGTTATGTATACTTTGTGTATACCATA
1 TGAAAAGGTTATGTATACTTTGTGTATACCACA
** *
67846121 TGAAAAGGAAATGTATACTTTGTGTATACCATA
1 TGAAAAGGTTATGTATACTTTGTGTATACCACA
*** * *
67846154 TGAAAAGAAAAGGTATACTTTGTGTGTACCAC
1 TGAAAAGGTTATGTATACTTTGTGTATACCAC
67846186 TTAGAAAGAA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
32 27 0.24
33 84 0.76
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (33 bp):
TGAAAAGGTTATGTATACTTTGTGTATACCACA
Found at i:67864223 original size:139 final size:139
Alignment explanation
Indices: 67863973--67864253 Score: 526
Period size: 139 Copynumber: 2.0 Consensus size: 139
67863963 TGTATGTACC
*
67863973 TATATTGCTTATTCTTATCATACTTTTATTCTCGTCTTGAATATGCCCGTTGAACCATTCAGAAT
1 TATATTGCTTATTCTGATCATACTTTTATTCTCGTCTTGAATATGCCCGTTGAACCATTCAGAAT
*
67864038 CATTACGAATACTTGATAATCACATATAGCTCGTACAATGTCATATCCTAGATATGGTCTTACAT
66 CATTACGAATACTTGATAATCACATATAGCTCGTACAATGCCATATCCTAGATATGGTCTTACAT
67864103 ATTATCAGA
131 ATTATCAGA
*
67864112 TATATTGCTTATTCTGATCATACTTTTATTCTTGTCTTGAATATGCCCGTTGAACCATTCAGAAT
1 TATATTGCTTATTCTGATCATACTTTTATTCTCGTCTTGAATATGCCCGTTGAACCATTCAGAAT
67864177 CATTACGAATACTTGATAATCACATATAGCTCGTACAATGCCATATCCTAGATATGGTCTTACAT
66 CATTACGAATACTTGATAATCACATATAGCTCGTACAATGCCATATCCTAGATATGGTCTTACAT
*
67864242 CTTATCAGA
131 ATTATCAGA
67864251 TAT
1 TAT
67864254 CGATGCCATG
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 138 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.39
Consensus pattern (139 bp):
TATATTGCTTATTCTGATCATACTTTTATTCTCGTCTTGAATATGCCCGTTGAACCATTCAGAAT
CATTACGAATACTTGATAATCACATATAGCTCGTACAATGCCATATCCTAGATATGGTCTTACAT
ATTATCAGA
Found at i:67864318 original size:50 final size:50
Alignment explanation
Indices: 67864254--67864425 Score: 214
Period size: 50 Copynumber: 3.5 Consensus size: 50
67864244 TATCAGATAT
67864254 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTTATATCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTTATATCAAGGC
* * * *
67864304 TGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCCTT-TATC-CGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CTTATATCAAG-GC
* *
67864354 CGATGCCATGTCCCAGACATGGTCTGACACTGA--CAC--ATATCAA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTTATATCAAGGC
*
67864399 CAATGCCATGTCCCAGACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
67864426 GACTAGCTCA
Statistics
Matches: 106, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
45 27 0.25
46 4 0.04
47 1 0.01
48 1 0.01
49 1 0.01
50 69 0.65
51 3 0.03
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTTATATCAAGGC
Found at i:67867149 original size:28 final size:28
Alignment explanation
Indices: 67867056--67867157 Score: 89
Period size: 28 Copynumber: 3.6 Consensus size: 28
67867046 CTTCGATGTC
* * *
67867056 TTGCACACTATGTACCATACTCGATACC
1 TTGCACACTAAGTGCCATACTCGATACT
* * * * * *
67867084 TCGCACGCTAAGTGCTATTCTGGAT-GT
1 TTGCACACTAAGTGCCATACTCGATACT
* *
67867111 TTCGCATACTAAGTGCCATCCTCGATACT
1 TT-GCACACTAAGTGCCATACTCGATACT
67867140 TTGCACACTAAGTGCCAT
1 TTGCACACTAAGTGCCAT
67867158 TTATATATAT
Statistics
Matches: 55, Mismatches: 17, Indels: 4
0.72 0.22 0.05
Matches are distributed among these distances:
27 1 0.02
28 51 0.93
29 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (28 bp):
TTGCACACTAAGTGCCATACTCGATACT
Found at i:67868608 original size:34 final size:34
Alignment explanation
Indices: 67868558--67868625 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
67868548 ACCCAAACCG
67868558 ACCATACCCCCCATTTCCACAATTTTATTCTTTT
1 ACCATACCCCCCATTTCCACAATTTTATTCTTTT
* * *
67868592 ACCATAGCCCCTATTTCCACCATTTTATTCTTTT
1 ACCATACCCCCCATTTCCACAATTTTATTCTTTT
67868626 TCTTTCTCCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.22, C:0.34, G:0.01, T:0.43
Consensus pattern (34 bp):
ACCATACCCCCCATTTCCACAATTTTATTCTTTT
Found at i:67871124 original size:39 final size:39
Alignment explanation
Indices: 67871081--67871167 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 39
67871071 CTCAAGTCTT
* * * *
67871081 GATATATTTCTAGCATATAGCCTTCGGA-TCTCATGTTCG
1 GATATATTTCCACCATATAGCCTGCGGACT-TCATGTCCG
*
67871120 GATATTTTTCCACCATATAGCCTGCGGACTTCATGTCCG
1 GATATATTTCCACCATATAGCCTGCGGACTTCATGTCCG
67871159 GATATATTT
1 GATATATTT
67871168 TCAATCTCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 40 0.98
40 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (39 bp):
GATATATTTCCACCATATAGCCTGCGGACTTCATGTCCG
Found at i:67873155 original size:27 final size:27
Alignment explanation
Indices: 67873138--67873315 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67873128 ATATTAAGTC
67873138 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* ** *
67873165 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
67873192 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
67873220 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
67873247 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
67873274 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
67873301 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
67873316 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:67873277 original size:82 final size:81
Alignment explanation
Indices: 67873159--67873314 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67873149 TGCTATATAA
* *
67873159 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67873224 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67873241 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67873305 CACTTAGTGC
65 CACTTAGTGC
67873315 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.