Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 197 of 311
Found at i:67873298 original size:54 final size:54
Alignment explanation
Indices: 67873138--67873314 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
67873128 ATATTAAGTC
* * * *
67873138 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
67873192 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
67873247 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
67873301 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67873315 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 57 0.55
55 45 0.43
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:67881298 original size:27 final size:27
Alignment explanation
Indices: 67881194--67881368 Score: 181
Period size: 27 Copynumber: 6.5 Consensus size: 27
67881184 ATATTAAGTC
* * * * *
67881194 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * *
67881221 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
* *
67881248 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCAACATAGTCAAAT
** * *
67881275 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * **
67881302 CG-ACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAAT
67881328 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
67881355 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67881369 TGTACAATTT
Statistics
Matches: 127, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 21 0.17
27 106 0.83
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAAAT
Found at i:67881331 original size:53 final size:54
Alignment explanation
Indices: 67881194--67881369 Score: 212
Period size: 54 Copynumber: 3.3 Consensus size: 54
67881184 ATATTAAGTC
* * * * * *
67881194 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
67881248 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
67881302 CG-ACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
67881355 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67881370 GTACAATTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 44 0.43
54 58 0.56
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:67889215 original size:27 final size:27
Alignment explanation
Indices: 67889198--67889375 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67889188 ATATTAAGTC
67889198 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* ** *
67889225 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
67889252 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
67889280 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
67889307 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
67889334 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
67889361 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
67889376 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:67889337 original size:82 final size:81
Alignment explanation
Indices: 67889219--67889374 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67889209 TGCTATATAA
* *
67889219 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67889284 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67889301 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67889365 CACTTAGTGC
65 CACTTAGTGC
67889375 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67889358 original size:54 final size:54
Alignment explanation
Indices: 67889198--67889374 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
67889188 ATATTAAGTC
* * * *
67889198 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
67889252 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
67889307 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
67889361 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67889375 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 57 0.55
55 45 0.43
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:67900407 original size:41 final size:40
Alignment explanation
Indices: 67900362--67900474 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
67900352 ATATGTGTGT
*
67900362 GCATTAGAATTGAGAGTTATATCCGGGCTAAGTCCCGAAGA
1 GCATTAGAACTG-GAGTTATATCCGGGCTAAGTCCCGAAGA
* ** *
67900403 GCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
1 GCATTAGAACTGGAGTTATATCCGGGCTAAGTCCCGAAGA
* ** * *
67900443 GCATTCGTGCTGGTGTTACATCCGGGCTAAGT
1 GCATTAGAACTGGAGTTATATCCGGGCTAAGT
67900475 TCTGAAGGGC
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
40 58 0.88
41 8 0.12
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GCATTAGAACTGGAGTTATATCCGGGCTAAGTCCCGAAGA
Found at i:67900422 original size:40 final size:40
Alignment explanation
Indices: 67900377--67900492 Score: 196
Period size: 40 Copynumber: 2.9 Consensus size: 40
67900367 AGAATTGAGA
67900377 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
67900417 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * * *
67900457 GTTACATCCGGGCTAAGTTCTGAAGGGCATTCGTGC
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
67900493 CTGTGATGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:67900584 original size:43 final size:43
Alignment explanation
Indices: 67900490--67900585 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
67900480 AGGGCATTCG
* *
67900490 TGCCTGTGATGTGCAATCAGGCCTTCATGCCTAGCAGGCTTTG
1 TGCCGGTGATGTGCAATCAGGCCTTCATGCCTAGCAGGCTTTA
* * * * * *
67900533 TGCTGGTGATGTGTATTCGGGCCTTCGTTCCTAGCAGG-TTTCA
1 TGCCGGTGATGTGCAATCAGGCCTTCATGCCTAGCAGGCTTT-A
67900576 TGCCGGTGAT
1 TGCCGGTGAT
67900586 TCGAGCAAAG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
42 3 0.07
43 40 0.93
ACGTcount: A:0.14, C:0.23, G:0.30, T:0.33
Consensus pattern (43 bp):
TGCCGGTGATGTGCAATCAGGCCTTCATGCCTAGCAGGCTTTA
Found at i:67900756 original size:25 final size:23
Alignment explanation
Indices: 67900704--67900749 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
67900694 TGTGTAATAA
67900704 CGAATGAATATAGGCACTGTGTG
1 CGAATGAATATAGGCACTGTGTG
67900727 CGAATGAAT-TGAGGCACTGTGTG
1 CGAATGAATAT-AGGCACTGTGTG
67900750 TGCGAATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (23 bp):
CGAATGAATATAGGCACTGTGTG
Found at i:67900779 original size:28 final size:28
Alignment explanation
Indices: 67900740--67900840 Score: 96
Period size: 28 Copynumber: 3.5 Consensus size: 28
67900730 ATGAATTGAG
*
67900740 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
* ** * ** *
67900768 GCACTATGTGTGCGAGA-CCGGTCAGTGG
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
67900796 GCACTATGTGTGTGCGAATTCTTTAACCGA
1 GCACTA--TGTGTGCGAATTCTTTAACCGA
67900826 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
67900841 GATCGGTTAG
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
28 33 0.61
29 2 0.04
30 19 0.35
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:67900813 original size:58 final size:58
Alignment explanation
Indices: 67900744--67900865 Score: 217
Period size: 58 Copynumber: 2.1 Consensus size: 58
67900734 ATTGAGGCAC
67900744 TGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGGCACTA
1 TGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGGCACTA
* * *
67900802 TGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTTAGTGGGCACTG
1 TGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGGCACTA
67900860 TGTGTG
1 TGTGTG
67900866 CGGATTTCGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (58 bp):
TGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGACCGGTCAGTGGGCACTA
Found at i:67900830 original size:30 final size:30
Alignment explanation
Indices: 67900744--67900837 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
67900734 ATTGAGGCAC
67900744 TGTGTGTGCGAATTCTTTAACCGAGCACTA
1 TGTGTGTGCGAATTCTTTAACCGAGCACTA
* ** * ** *
67900774 --TGTGTGCGAGA-CCGGTCAGTGGGCACTA
1 TGTGTGTGCGA-ATTCTTTAACCGAGCACTA
67900802 TGTGTGTGCGAATTCTTTAACCGAGCACTA
1 TGTGTGTGCGAATTCTTTAACCGAGCACTA
67900832 TGTGTG
1 TGTGTG
67900838 CGAGATCGGT
Statistics
Matches: 46, Mismatches: 14, Indels: 8
0.68 0.21 0.12
Matches are distributed among these distances:
28 19 0.41
29 2 0.04
30 25 0.54
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (30 bp):
TGTGTGTGCGAATTCTTTAACCGAGCACTA
Found at i:67900857 original size:28 final size:28
Alignment explanation
Indices: 67900768--67900867 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 28
67900758 CTTTAACCGA
* *
67900768 GCACTATGTGTGCGAGACCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTTAGTGG
* ** *
67900796 GCACTATGTGTGTGCGA-ATTC-TTTAACCGA
1 GCACTA--TGTGTGCGAGA-TCGGTT-AGTGG
67900826 GCACTATGTGTGCGAGATCGGTTAGTGG
1 GCACTATGTGTGCGAGATCGGTTAGTGG
*
67900854 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
67900868 GATTTCGTTT
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
28 32 0.58
29 5 0.09
30 18 0.33
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTTAGTGG
Found at i:67929231 original size:64 final size:64
Alignment explanation
Indices: 67929150--67929333 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
67929140 AGACATTATG
* *
67929150 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * * *
67929214 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAGGACACCATGCAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67929279 AA
63 AA
* * * * *
67929281 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCATCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
67929334 CGAACTATAT
Statistics
Matches: 93, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 20 0.22
65 8 0.09
66 15 0.16
67 30 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67934510 original size:30 final size:30
Alignment explanation
Indices: 67934458--67934554 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
67934448 TTATGGAGCA
67934458 AAGATAAGAAGAAAACC-GAATAAAGAAATCC
1 AAGAT-AG-AGAAAACCAGAATAAAGAAATCC
*
67934489 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAGAGAAAACCAGAATAAAGAAATCC
* * * * *
67934519 -AGAATAAAGAGATCCAGGATAAAGAAACCC
1 AAG-ATAGAGAAAACCAGAATAAAGAAATCC
67934549 AAGATA
1 AAGATA
67934555 CGATACTATG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 9 0.16
30 41 0.72
31 7 0.12
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGATAGAGAAAACCAGAATAAAGAAATCC
Found at i:67934514 original size:15 final size:15
Alignment explanation
Indices: 67934466--67934545 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
67934456 CAAAGATAAG
*
67934466 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67934480 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67934495 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
67934510 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67934525 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67934540 AAGAAA
1 AAGAAA
67934546 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67934554 original size:15 final size:15
Alignment explanation
Indices: 67934477--67934554 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
67934467 AGAAAACCGA
67934477 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
67934492 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
67934506 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
67934521 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67934537 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67934552 ATA
1 ATA
67934555 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67938207 original size:47 final size:47
Alignment explanation
Indices: 67938076--67938244 Score: 162
Period size: 47 Copynumber: 3.6 Consensus size: 47
67938066 ATAGTAAAAC
* * * *
67938076 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * * ** *
67938125 CATGGTCTTACAC-GGATCACATATCACACTAATGCCATATCTCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* *
67938171 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
67938218 TATGGTCTTATACGGAAGCACATATCA
1 TATGGTCTTACACAGTAGCACATATCA
67938245 TATTTCTCCG
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 24 0.24
47 52 0.53
48 10 0.10
49 12 0.12
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:67949457 original size:44 final size:44
Alignment explanation
Indices: 67949409--67949526 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 44
67949399 CAATACCGAG
* * *
67949409 ATAGCTTCTGTTAAT-TGAGAAAGCACTAAGTGCGCGGAATTATT
1 ATAGCTTCGGCTAATCT-AGAAAGCACTAAGTGCGCAGAATTATT
** * *
67949453 ATAGCTTCGGCTAATCTTTAAAGCACTAAGTGTGCAGAATTGTT
1 ATAGCTTCGGCTAATCTAGAAAGCACTAAGTGCGCAGAATTATT
**
67949497 ATAGCTTCGGCTAATCTTTAAAGCACTAAG
1 ATAGCTTCGGCTAATCTAGAAAGCACTAAG
67949527 GGTGCAGATG
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 65 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (44 bp):
ATAGCTTCGGCTAATCTAGAAAGCACTAAGTGCGCAGAATTATT
Found at i:67949532 original size:44 final size:44
Alignment explanation
Indices: 67949428--67949534 Score: 178
Period size: 44 Copynumber: 2.4 Consensus size: 44
67949418 GTTAATTGAG
* *
67949428 AAAGCACTAAGTGCGCGGAATTATTATAGCTTCGGCTAATCTTT
1 AAAGCACTAAGTGTGCAGAATTATTATAGCTTCGGCTAATCTTT
*
67949472 AAAGCACTAAGTGTGCAGAATTGTTATAGCTTCGGCTAATCTTT
1 AAAGCACTAAGTGTGCAGAATTATTATAGCTTCGGCTAATCTTT
*
67949516 AAAGCACTAAGGGTGCAGA
1 AAAGCACTAAGTGTGCAGA
67949535 TGTTTAAAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
AAAGCACTAAGTGTGCAGAATTATTATAGCTTCGGCTAATCTTT
Found at i:67956169 original size:55 final size:53
Alignment explanation
Indices: 67956027--67956187 Score: 137
Period size: 55 Copynumber: 3.0 Consensus size: 53
67956017 TTACCATTAA
* * * *
67956027 CATGTCTTGACACGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGC
* * * ** * *
67956080 CATGCCTTGGCATGGTCTTACTTGGGATAT--TTGCCTTATAGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACAT--GATATCCTTGCCTTAT-G-AACTCACCAATGC
* * *
67956135 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATG
1 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATG
67956188 TCAAGCCATA
Statistics
Matches: 84, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
53 32 0.38
54 10 0.12
55 42 0.50
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGC
Found at i:67957016 original size:11 final size:11
Alignment explanation
Indices: 67956919--67957015 Score: 113
Period size: 11 Copynumber: 8.8 Consensus size: 11
67956909 AACACGACAA
* *
67956919 AAAATAGCAGC
1 AAAACAGCACC
*
67956930 AAAATAGCACC
1 AAAACAGCACC
67956941 AAAACAGCACC
1 AAAACAGCACC
* *
67956952 CAAACAACACC
1 AAAACAGCACC
67956963 AAAACAGCACC
1 AAAACAGCACC
*
67956974 CAAACAGCACC
1 AAAACAGCACC
67956985 AAAACAGCACC
1 AAAACAGCACC
* * *
67956996 CAAACTGCAGC
1 AAAACAGCACC
67957007 AAAACAGCA
1 AAAACAGCA
67957016 GTGAGCTAGG
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 73 1.00
ACGTcount: A:0.53, C:0.34, G:0.10, T:0.03
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:67966717 original size:46 final size:46
Alignment explanation
Indices: 67966545--67966711 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
67966535 TGTAAGCCGC
*
67966545 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGTTCGCAT
* * * * * *
67966591 CCATAAGTGAACTCGAACTCAACTCAACAAGCTCGGATGCCTAGTTACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCG-CA-T
* * * *
67966640 TC-TCA-TGAACTCGGACGCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
67966684 CCAAAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
67966712 CAGTTCAGAT
Statistics
Matches: 94, Mismatches: 21, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 54 0.57
47 31 0.33
48 3 0.03
49 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:67966723 original size:93 final size:93
Alignment explanation
Indices: 67966553--67966724 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
67966543 GCCCATAAGC
* *
67966553 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACGCAACTCAACGAGCTCGAGCGTTCGCATCCAAAAGTGAACTCGAACTCAACTCAA
*
67966618 CAAGCTCGGATGCCTAGTTACTTCTCAT
66 CAAGCTCAGATGCCTAGTTACTTCTCAT
* *
67966646 GAACTCGGACGCAACTCAACGAGTTCG-GACGTTCGCATCCAAAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACGCAACTCAACGAGCTCGAG-CGTTCGCATCCAAAAGTGAACTCGAACTCAACTCA
* *
67966710 ACCAGTTCAGATGCC
65 ACAAGCTCAGATGCC
67966725 CAAATATACG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACGCAACTCAACGAGCTCGAGCGTTCGCATCCAAAAGTGAACTCGAACTCAACTCAA
CAAGCTCAGATGCCTAGTTACTTCTCAT
Found at i:67966865 original size:46 final size:45
Alignment explanation
Indices: 67966797--67967064 Score: 215
Period size: 46 Copynumber: 5.8 Consensus size: 45
67966787 TCTCCCCGCC
*
67966797 CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
* * *
67966842 CTATAAGTGAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 C-ATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCACAT
* * *
67966892 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCACAT
1 CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
* * * *
67966935 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCACAT
* * * *
67966985 C-TCA-CGAACTCAGACTCAACTTAACGAGTTCAGACGTTCGCAT
1 CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
* * *
67967028 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 -CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA
67967065 TGCCCAAATA
Statistics
Matches: 175, Mismatches: 29, Indels: 37
0.73 0.12 0.15
Matches are distributed among these distances:
42 6 0.03
43 7 0.04
44 4 0.02
45 5 0.03
46 83 0.47
47 49 0.28
48 4 0.02
49 3 0.02
50 8 0.05
51 6 0.03
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (45 bp):
CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:67966915 original size:47 final size:47
Alignment explanation
Indices: 67966850--67967005 Score: 178
Period size: 47 Copynumber: 3.3 Consensus size: 47
67966840 ATCTATAAGT
67966850 GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
* * * * * *
67966897 GAACTCGGACTCAACTCAACGAGTTC--A-GAC--GTTCACATCCATAAGT
1 GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
*
67966943 GAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
67966990 GAACTCAGACTCAACT
1 GAACTCAGACTCAACT
67967006 TAACGAGTTC
Statistics
Matches: 88, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.05
44 3 0.03
45 3 0.03
46 24 0.27
47 38 0.43
48 3 0.03
49 3 0.03
50 4 0.05
51 3 0.03
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
Found at i:67966962 original size:93 final size:93
Alignment explanation
Indices: 67966803--67967068 Score: 451
Period size: 93 Copynumber: 2.9 Consensus size: 93
67966793 CGCCCATAAG
* * *
67966803 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCTATAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
67966868 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
* *
67966896 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
67966961 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
*
67966989 CGAACTCAGACTCAACTTAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
** *
67967054 ATGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
67967069 CAAATATCTT
Statistics
Matches: 162, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:67970176 original size:14 final size:14
Alignment explanation
Indices: 67970157--67970211 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
67970147 TAAAGATAAC
*
67970157 AAGAAAACCAAATA
1 AAGAAATCCAAATA
*
67970171 AAGAAATCCAAGATG
1 AAGAAATCCAA-ATA
* *
67970186 GAGAAACCCAGAATA
1 AAGAAATCCA-AATA
67970201 AAGAAATCCAA
1 AAGAAATCCAA
67970212 GATACGATCT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
14 11 0.34
15 20 0.62
16 1 0.03
ACGTcount: A:0.60, C:0.16, G:0.15, T:0.09
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:67970201 original size:30 final size:29
Alignment explanation
Indices: 67970158--67970214 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
67970148 AAAGATAACA
67970158 AGAAAACCAAATAAAGAAATCCAAGATGG
1 AGAAAACCAAATAAAGAAATCCAAGATGG
*
67970187 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACCA-AATAAAGAAATCCAAGAT
67970215 ACGATCTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (29 bp):
AGAAAACCAAATAAAGAAATCCAAGATGG
Found at i:67976488 original size:48 final size:47
Alignment explanation
Indices: 67976426--67976710 Score: 484
Period size: 48 Copynumber: 6.0 Consensus size: 47
67976416 GAAATGATAG
67976426 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-GA
67976474 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67976520 TAAGGCCTAATGGCCGAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTATATATGTGA
*
67976568 TAAGGCCTAATGGCCGATGTGATTGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGA-TGAATGTGAAAGTGTATATATGTGA
* *
67976616 TAATGGGCCTAATGGCGGATGTGATGAATGTGAAAGTGTGTATATGTGA
1 TAA--GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67976665 TAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67976711 CGGGGCGAGT
Statistics
Matches: 226, Mismatches: 6, Indels: 12
0.93 0.02 0.05
Matches are distributed among these distances:
46 38 0.17
47 55 0.24
48 89 0.39
49 26 0.12
50 18 0.08
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:67976602 original size:95 final size:94
Alignment explanation
Indices: 67976426--67976708 Score: 489
Period size: 95 Copynumber: 3.0 Consensus size: 94
67976416 GAAATGATAG
67976426 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-GATAAGGCCTAATGGCCGA
67976491 TGTGATGAATGTGAAAGTGTATATATGT-A
65 TGTGATGAATGTGAAAGTGTATATATGTAA
67976520 TAAGGCCTAATGGCCGAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
67976585 TGTGATTGAATGTGAAAGTGTATATATGTAA
65 TGTGA-TGAATGTGAAAGTGTATATATGTAA
* *
67976616 TAATGGGCCTAATGGCGGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 TAA--GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67976681 ATGTGATG-ATGTGAAAGTGTATATATGT
64 ATGTGATGAATGTGAAAGTGTATATATGT
67976709 GACGGGGCGA
Statistics
Matches: 182, Mismatches: 2, Indels: 9
0.94 0.01 0.05
Matches are distributed among these distances:
94 40 0.22
95 72 0.40
96 6 0.03
97 52 0.29
98 12 0.07
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAA
Found at i:67976934 original size:36 final size:37
Alignment explanation
Indices: 67976879--67976956 Score: 115
Period size: 36 Copynumber: 2.1 Consensus size: 37
67976869 CCGAGCTCTA
*
67976879 AAGACCCGATGACTACGTGTGG-GAATT-TGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
67976915 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67976952 AAGAC
1 AAGAC
67976957 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 23 0.61
37 15 0.39
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67978381 original size:47 final size:47
Alignment explanation
Indices: 67978312--67978544 Score: 360
Period size: 47 Copynumber: 5.0 Consensus size: 47
67978302 GGGTGTTACA
* *
67978312 ATGAATATGAACATGCATATATGTGATAAGGCCGAATGACCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
*
67978359 ATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67978406 ATGAATGTGAACATGCTTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67978453 AAGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
67978500 ATAAATGTGAACATGCATTACATGTGATAA-GCAGAATGGCCAATG
1 ATGAATGTGAACATGCA-TATATGTGATAAGGCCGAATGGCCAATG
67978545 GCAATTGATG
Statistics
Matches: 170, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 159 0.94
48 11 0.06
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (47 bp):
ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:67978629 original size:46 final size:46
Alignment explanation
Indices: 67978571--67978665 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 46
67978561 GATGTGTATA
* * *
67978571 TATGTGGGAAAGCCGAATGGTTAATGCGAAATTTGTATGAGATGGG
1 TATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGGG
* * * *
67978617 TATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATGTG
1 TATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGGG
67978663 TAT
1 TAT
67978666 ATATATATTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.31
Consensus pattern (46 bp):
TATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGGG
Found at i:67981498 original size:46 final size:46
Alignment explanation
Indices: 67981431--67981698 Score: 266
Period size: 46 Copynumber: 5.8 Consensus size: 46
67981421 TGTAACCCTC
67981431 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
67981477 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * *
67981527 -C-TCACG-G-ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
67981570 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* *
67981620 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
67981663 CCATAAGTGAACTCAGACTCAACCCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67981699 ATGACCAAGT
Statistics
Matches: 183, Mismatches: 19, Indels: 40
0.76 0.08 0.17
Matches are distributed among these distances:
42 6 0.03
43 6 0.03
44 6 0.03
45 5 0.03
46 86 0.47
47 51 0.28
48 5 0.03
49 6 0.03
50 6 0.03
51 6 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:67981548 original size:93 final size:93
Alignment explanation
Indices: 67981439--67981701 Score: 445
Period size: 93 Copynumber: 2.8 Consensus size: 93
67981429 TCCCATAAGT
* *
67981439 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67981504 TGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
67981532 GGACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67981597 CGAGCTCGGATGCCTAGTTACATCTCAT
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
67981625 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACCCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67981690 CGAGTTCGGATG
66 CGAGCTCGGATG
67981702 ACCAAGTATC
Statistics
Matches: 159, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 159 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:67981549 original size:47 final size:47
Alignment explanation
Indices: 67981491--67981652 Score: 174
Period size: 47 Copynumber: 3.5 Consensus size: 47
67981481 AAGTGAACTT
* *
67981491 GGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCACGGACTC
1 GGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAAGGACTC
* *
67981538 GGACTCAACTCAACGAGTTCGGA---C--GTTCGCATC-CATAAGTGAACTC
1 GGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC--AAG-G-ACTC
* *
67981584 GGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTC
1 GGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAAGGACTC
*
67981631 GGACTCAACTCAACGAGTTCGG
1 GGACTCAACTCAACGAGCTCGG
67981653 GCGTTCGCAT
Statistics
Matches: 95, Mismatches: 9, Indels: 22
0.75 0.07 0.17
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 3 0.03
45 1 0.01
46 26 0.27
47 46 0.48
49 3 0.03
50 4 0.04
51 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (47 bp):
GGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAAGGACTC
Found at i:67984434 original size:14 final size:14
Alignment explanation
Indices: 67984415--67984469 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
67984405 TAAAGTTAAC
*
67984415 AAGAAAACCAAATA
1 AAGAAATCCAAATA
*
67984429 AAGAAATCCAAGATT
1 AAGAAATCCAA-ATA
* *
67984444 GAGAAACCCAGAATA
1 AAGAAATCCA-AATA
67984459 AAGAAATCCAA
1 AAGAAATCCAA
67984470 GATACGATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
14 11 0.34
15 20 0.62
16 1 0.03
ACGTcount: A:0.60, C:0.16, G:0.13, T:0.11
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:67984459 original size:30 final size:29
Alignment explanation
Indices: 67984416--67984472 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
67984406 AAAGTTAACA
67984416 AGAAAACCAAATAAAGAAATCCAAGATTG
1 AGAAAACCAAATAAAGAAATCCAAGATTG
*
67984445 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACCA-AATAAAGAAATCCAAGAT
67984473 ACGATACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.58, C:0.16, G:0.14, T:0.12
Consensus pattern (29 bp):
AGAAAACCAAATAAAGAAATCCAAGATTG
Found at i:67987486 original size:46 final size:47
Alignment explanation
Indices: 67987419--67987592 Score: 155
Period size: 46 Copynumber: 3.7 Consensus size: 47
67987409 TGTAAGCCGC
*
67987419 CCATAAGAGAACTC-AGACTCAACTCAACGAGCTCGAG-CGTTCGCAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTCGAGACGTTCGCAT
* * * *
67987465 CCATAAGTGAACTCGAACTCAACTCAATGAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGC-TCGA-GAC--GTTCGCAT
* * *
67987515 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTC-AGACGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGAGACGTTCGCAT
* * *
67987558 CCAAAAGTGAACTTGAACTCAAATCAACGAGCTCG
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCG
67987593 GATGCCTAGT
Statistics
Matches: 100, Mismatches: 17, Indels: 21
0.72 0.12 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 2 0.02
46 52 0.52
47 26 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGAGACGTTCGCAT
Found at i:67987535 original size:47 final size:47
Alignment explanation
Indices: 67987472--67987641 Score: 136
Period size: 47 Copynumber: 3.6 Consensus size: 47
67987462 CATCCATAAG
*
67987472 TGAACTCGAACTCAACTCAATGAGCTTGGATGCCTAGTTACATCTCA
1 TGAACTCGAACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCA
* * * *
67987519 TGAACTCGGACTCAACTCAACGAG-TT-CA-GAC--GTTCGCATC-CAAAA
1 TGAACTCGAACTCAACTCAACGAGCTTGGATGCCTAGTT-ACATCTC---A
* * *
67987564 GTGAACTTGAACTCAAATCAACGAGCTCGGATGCCTAGTTACATCTCA
1 -TGAACTCGAACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCA
* * * * *
67987612 CGAACTCGGACTCAGCTCAACAAGTTTGGA
1 TGAACTCGAACTCAACTCAACGAGCTTGGA
67987642 CGTTCGCATC
Statistics
Matches: 92, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 2 0.02
45 2 0.02
46 23 0.25
47 45 0.49
48 2 0.02
49 2 0.02
50 4 0.04
51 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (47 bp):
TGAACTCGAACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCA
Found at i:67987540 original size:93 final size:94
Alignment explanation
Indices: 67987427--67987691 Score: 360
Period size: 93 Copynumber: 2.9 Consensus size: 94
67987417 GCCCATAAGA
* *
67987427 GAACTCAGACTCAACTCAACGAGCTCGAG-CGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
67987491 ATGAGCTTGGATGCCTAGTTACATCTCAT
66 ATGAGCTTGGATGCCTAGTTACATCTCAC
* * *
67987520 GAACTCGGACTCAACTCAACGAGTTC-AGACGTTCGCATCCAAAAGTGAACTTGAACTCAAATCA
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
* *
67987584 ACGAGCTCGGATGCCTAGTTACATCTCAC
66 ATGAGCTTGGATGCCTAGTTACATCTCAC
* * * * *
67987613 GAACTCGGACTCAGCTCAACAAGTTTG-GACGTTCGCATCCATAAGTGAACTC-AGACTCGACTT
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCATAAGTGAACTCGA-ACTCAACTC
67987676 AATGAG-TTCGGATGCC
65 AATGAGCTT-GGATGCC
67987692 CAAATATCCG
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
92 4 0.03
93 146 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
ATGAGCTTGGATGCCTAGTTACATCTCAC
Found at i:67989211 original size:40 final size:40
Alignment explanation
Indices: 67989161--67989343 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
67989151 TACTCACTCG
* * *
67989161 AATGTCTTCGGGACATAGCCCGGATGTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
67989201 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
67989241 AATGCCTTCGGGGCTTAACCCAGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
67989281 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGA-A
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGC-ACA
67989321 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
67989344 TTATCATCCG
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:67993113 original size:18 final size:19
Alignment explanation
Indices: 67993090--67993126 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
67993080 CTACTTTTAG
67993090 AACAAA-GGACTAAATCGT
1 AACAAATGGACTAAATCGT
67993108 AACAAATTGGACTAAATCG
1 AACAAA-TGGACTAAATCG
67993127 AATAGACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (19 bp):
AACAAATGGACTAAATCGT
Found at i:67998154 original size:48 final size:48
Alignment explanation
Indices: 67998083--67998258 Score: 253
Period size: 48 Copynumber: 3.7 Consensus size: 48
67998073 ATAAGGTCCC
67998083 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * *
67998131 ATGTAAGATCATGCCTGGGACATGCCATCGGCGTGGATATGTGAGCCA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * * *
67998179 GTGTAAGACCATGTCTGGGACATGGCATCGGTGCTGATATGTGTGCTA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
67998227 GTGTAAGATCATGTCTGGGACATGGCATCGGC
1 ATGTAAGACCATGTCTGGGACATGGCATCGGC
67998259 ACTAACATGA
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (48 bp):
ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:67998248 original size:96 final size:96
Alignment explanation
Indices: 67998084--67998258 Score: 287
Period size: 96 Copynumber: 1.8 Consensus size: 96
67998074 TAAGGTCCCA
*
67998084 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAATGTAAGATCATGCCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGCTGATATGTGAGCCAATGTAAGATCATGCCTGG
67998149 GACATGCCATCGGCGTGGATATGTGAGCCAG
66 GACATGCCATCGGCGTGGATATGTGAGCCAG
* * * * *
67998180 TGTAAGACCATGTCTGGGACATGGCATCGGTGCTGATATGTGTGCTAGTGTAAGATCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGCTGATATGTGAGCCAATGTAAGATCATGCCTGG
*
67998245 GACATGGCATCGGC
66 GACATGCCATCGGC
67998259 ACTAACATGA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 72 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGCTGATATGTGAGCCAATGTAAGATCATGCCTGG
GACATGCCATCGGCGTGGATATGTGAGCCAG
Found at i:67998282 original size:96 final size:96
Alignment explanation
Indices: 67998086--67998304 Score: 251
Period size: 96 Copynumber: 2.3 Consensus size: 96
67998076 AGGTCCCATG
*
67998086 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAATGTAAGATCATGCCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCGCTGATATGTGAGCCAATGTAAGATCATGCCTGGGA
* * * * *
67998151 CATGCCATCGGCGTGGATATGTGAGCCAGTG
66 CATGCCATCGGCCTGAACATGAGAGCCAGTA
* * * * *
67998182 TAAGACCATGTCTGGGACATGGCATCGGTGCTGATATGTGTGCTAGTGTAAGATCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCGCTGATATGTGAGCCAATGTAAGATCATGCCTGGGA
* ****
67998247 CATGGCATCGGCACT-AACATGAGATTTTGTA
66 CATGCCATCGGC-CTGAACATGAGAGCCAGTA
* * *
67998278 TAAGACCATATCCGGGATATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
67998305 ATATGTGGAT
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
96 102 0.99
97 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGCTGATATGTGAGCCAATGTAAGATCATGCCTGGGA
CATGCCATCGGCCTGAACATGAGAGCCAGTA
Found at i:68001418 original size:35 final size:35
Alignment explanation
Indices: 68001379--68001451 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
68001369 CAGGTATGTG
68001379 ATATATATTATTTATGTGAGATTAATCTGACGAGA
1 ATATATATTATTTATGTGAGATTAATCTGACGAGA
*
68001414 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTAATCTGACGAGA
68001449 ATA
1 ATA
68001452 AAGAATGTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTAATCTGACGAGA
Found at i:68002667 original size:17 final size:17
Alignment explanation
Indices: 68002636--68002677 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
68002626 GTTTATGCTT
68002636 TGTTAATGTTATAAATGA
1 TGTTAATGTTATAAAT-A
*
68002654 TGTT-ATGTTTTAAATA
1 TGTTAATGTTATAAATA
*
68002670 TGTGAATG
1 TGTTAATG
68002678 AGAACTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 4 0.19
17 13 0.62
18 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (17 bp):
TGTTAATGTTATAAATA
Found at i:68002896 original size:43 final size:43
Alignment explanation
Indices: 68002848--68002983 Score: 227
Period size: 43 Copynumber: 3.2 Consensus size: 43
68002838 GCATGAAACT
*
68002848 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
68002891 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* **
68002934 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
68002977 CGGTGAT
1 CGGTGAT
68002984 TCGAGCAAGG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:68003173 original size:29 final size:29
Alignment explanation
Indices: 68003140--68003239 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
68003130 ATGATTAGAG
*
68003140 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCAAATTCCTTTAACCGA
* ** **
68003169 GCACTATGTGTGCGAGA-T-CAGTAATTGA
1 GCACTATGTGTGC-AAATTCCTTTAACCGA
* * *
68003197 GGCACTGTGTGTACGAATTCCTTTAACCGA
1 -GCACTATGTGTGCAAATTCCTTTAACCGA
68003227 GCACTATGTGTGC
1 GCACTATGTGTGC
68003240 GAGATCGGTA
Statistics
Matches: 51, Mismatches: 16, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
28 7 0.14
29 36 0.71
30 8 0.16
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCCTTTAACCGA
Found at i:68003259 original size:29 final size:29
Alignment explanation
Indices: 68003169--68003323 Score: 113
Period size: 29 Copynumber: 5.4 Consensus size: 29
68003159 CTTTAACCGA
* *
68003169 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTAACTGAG
* * ** *
68003198 GCACTGTGTGTACGA-ATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGA-T-CGGTAACTGAG
*
68003227 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTAACTGAG
* * * *
68003256 GCACTGTGTGTGCGAGTTC-TTCAACCGA-
1 GCACTATGTGTGCGAGATCGGT-AACTGAG
* *
68003284 GCACTATGTGTGCGAGATCGGTCAGTG-G
1 GCACTATGTGTGCGAGATCGGTAACTGAG
*
68003312 GCACTAAGTGTG
1 GCACTATGTGTG
68003324 TGAAATGAGA
Statistics
Matches: 95, Mismatches: 24, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
28 38 0.40
29 50 0.53
30 7 0.07
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCGGTAACTGAG
Found at i:68003315 original size:28 final size:28
Alignment explanation
Indices: 68003227--68003323 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 28
68003217 CTTTAACCGA
* *
68003227 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* * * * *
68003256 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGCGAGATCGGTC-ACTGG
*
68003284 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCACTGG
*
68003312 GCACTAAGTGTG
1 GCACTATGTGTG
68003324 TGAAATGAGA
Statistics
Matches: 52, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
28 31 0.60
29 21 0.40
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCACTGG
Found at i:68003323 original size:58 final size:58
Alignment explanation
Indices: 68003137--68003305 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
68003127 CGAATGATTA
* *
68003137 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
*
68003195 GAGGCACTGTGTGTACGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
68003253 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
68003306 CAGTGGGCAC
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 31 0.30
58 74 0.70
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:68007281 original size:35 final size:35
Alignment explanation
Indices: 68007242--68007314 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
68007232 GGTATGTGAT
68007242 ATATATATTATTTATGTGAGATTAATCTGACGAGA
1 ATATATATTATTTATGTGAGATTAATCTGACGAGA
*
68007277 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTAATCTGACGAGA
68007312 ATA
1 ATA
68007315 AAGAATGTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTAATCTGACGAGA
Found at i:68014750 original size:12 final size:13
Alignment explanation
Indices: 68014734--68014771 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
68014724 AAGTAATGTA
68014734 AGGTATAATATAT
1 AGGTATAATATAT
*
68014747 -GGTAAAATATAT
1 AGGTATAATATAT
68014759 AGTGTATAATATA
1 AG-GTATAATATA
68014772 ATTTGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:68014828 original size:21 final size:19
Alignment explanation
Indices: 68014777--68014829 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 19
68014767 ATATAATTTG
*
68014777 TAAACAAAATATATAATAA
1 TAAAAAAAATATATAATAA
* **
68014796 TATAAACCATATGATAAGTAA
1 TAAAAAAAATAT-ATAA-TAA
68014817 TAAAAAAAATATA
1 TAAAAAAAATATA
68014830 ATATAATATA
Statistics
Matches: 25, Mismatches: 7, Indels: 3
0.71 0.20 0.09
Matches are distributed among these distances:
19 8 0.32
20 5 0.20
21 12 0.48
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (19 bp):
TAAAAAAAATATATAATAA
Found at i:68014886 original size:10 final size:10
Alignment explanation
Indices: 68014822--68014923 Score: 56
Period size: 10 Copynumber: 10.6 Consensus size: 10
68014812 AGTAATAAAA
68014822 AAAATATAAT
1 AAAATATAAT
68014832 ATAATATATAAT
1 A-AA-ATATAAT
68014844 AAAA-ATAA-
1 AAAATATAAT
*
68014852 AAAA-ATACT
1 AAAATATAAT
* **
68014861 ATAA-GGAAT
1 AAAATATAAT
*
68014870 AATATATAAT
1 AAAATATAAT
*
68014880 AAAATATGAT
1 AAAATATAAT
*
68014890 ---ATGTAAT
1 AAAATATAAT
68014897 AAAATATAAAT
1 AAAATAT-AAT
68014908 AAAATATAAT
1 AAAATATAAT
*
68014918 GAAATA
1 AAAATA
68014924 AAAATGCTAT
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
7 5 0.07
8 7 0.10
9 11 0.16
10 24 0.35
11 14 0.20
12 8 0.12
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.29
Consensus pattern (10 bp):
AAAATATAAT
Found at i:68014891 original size:17 final size:17
Alignment explanation
Indices: 68014871--68014903 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68014861 ATAAGGAATA
68014871 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
68014888 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
68014904 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:68034827 original size:49 final size:50
Alignment explanation
Indices: 68034755--68034940 Score: 205
Period size: 49 Copynumber: 3.5 Consensus size: 50
68034745 TGAGGTCACG
68034755 TGTGTAGTACTAAGTGCAGGCTACTA-CGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATCGTGTACCGGATAATTGGTCGCA
* * * * *
68034804 TGTGTAGTACTAAGTGCAGGCTACTATC-CGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATCGTGTACCGGATAA-TT-GGTCGCA
68034855 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGG---CTAC---TATC-G-T-GTACCGGATAATTGGTCGCA
*
68034914 TGTGTAGTACTAAGTGCAGGGTACTAT
1 TGTGTAGTACTAAGTGCAGGCTACTAT
68034941 TCGTACTATA
Statistics
Matches: 113, Mismatches: 11, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
49 36 0.32
50 3 0.03
51 24 0.21
53 3 0.03
54 4 0.04
56 3 0.03
57 4 0.04
59 24 0.21
60 2 0.02
61 10 0.09
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATCGTGTACCGGATAATTGGTCGCA
Found at i:68038033 original size:15 final size:15
Alignment explanation
Indices: 68038015--68038047 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
68038005 TGGATTCTCG
68038015 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
68038030 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
68038045 TAT
1 TAT
68038048 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:68040889 original size:49 final size:49
Alignment explanation
Indices: 68040810--68041037 Score: 285
Period size: 49 Copynumber: 4.6 Consensus size: 49
68040800 TCTATTGTGA
*
68040810 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
68040859 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * * **
68040910 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
68040959 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
**
68041009 GGTTGCATGTGTAGTACTAAGTGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
68041038 GCTATGCATA
Statistics
Matches: 150, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 68 0.45
50 43 0.29
51 39 0.26
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:68042797 original size:48 final size:48
Alignment explanation
Indices: 68042722--68042984 Score: 249
Period size: 48 Copynumber: 5.4 Consensus size: 48
68042712 GTTATGTGAA
* *
68042722 CTAGTGTAAGACCACGTTTGGAACATGGCATCGACATTGATATGAGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAG
* * * * * * *
68042770 CTAATGTAAGACCTTGTCTGGGACATGGCATCAACCTCGATATGTGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAG
* * * *
68042818 CTAGTGTAAAACCATGTTTGGAACATGGCATCGGCATTTATATATGAGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATCGACA-TT-GATATGAGAG
* * * * * ** * *
68042868 CTAGTGTAAGACCATGTCTGGGACATGGTATTGGCCTCAACATGTGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAG
* *
68042916 CTAGTGTAAGACCATGTTTGGAACATGGCATCAGCACCAAT-ATATGAGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATC-G-A-CATTGATATGAGAG
*
68042966 CCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACCATGTCT
68042985 AAGACATGAC
Statistics
Matches: 168, Mismatches: 42, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
48 102 0.61
49 3 0.02
50 62 0.37
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAG
Found at i:68042894 original size:98 final size:97
Alignment explanation
Indices: 68042714--68043000 Score: 369
Period size: 98 Copynumber: 2.9 Consensus size: 97
68042704 ATACCAGGGT
* * * * *
68042714 TATGTGAACTAGTGTAAGACCACGTTTGGAACATGGCATCGACATT-GATATGAGAGCTAATGTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATATATGAGAGCTAGTGTA
* *
68042778 AGACCTTGTCTGGGACATGGCATCAACCTCGA
66 AGACCATGTCTGGGACATGGCATCAACCTCAA
*
68042810 TATGTGAGCTAGTGTAAAACCATGTTTGGAACATGGCATCGGCATTTATATATGAGAGCTAGTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-TTATATATGAGAGCTAGTGT
* ***
68042875 AAGACCATGTCTGGGACATGGTATTGGCCTCAA
65 AAGACCATGTCTGGGACATGGCATCAACCTCAA
* * ** *
68042908 CATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCACCAATATATGAGAGCCAGTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-TTATATATGAGAGCTAGTGT
** *
68042973 AAGACCATGTCTAAGACATGACATCAAC
65 AAGACCATGTCTGGGACATGGCATCAAC
68043001 ATCTTACCCT
Statistics
Matches: 163, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
96 40 0.25
97 2 0.01
98 121 0.74
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (97 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATATATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCATCAACCTCAA
Found at i:68044611 original size:28 final size:27
Alignment explanation
Indices: 68044515--68044616 Score: 89
Period size: 28 Copynumber: 3.7 Consensus size: 27
68044505 TAAATATCGC
* *
68044515 CCACTAGGCCCAATCTCTTTCATATGG
1 CCACTAGGCCCAATCACATTCATATGG
* * * * *
68044542 CC-CATTGGCCCATTCATATTTATGTGG
1 CCAC-TAGGCCCAATCACATTCATATGG
*
68044569 CCAATTAGGCCCAAATCACATTCATATGG
1 CC-ACTAGGCCC-AATCACATTCATATGG
68044598 CCACTAGGCCCAAATCACA
1 CCACTAGGCCC-AATCACA
68044617 CTTACAATTA
Statistics
Matches: 57, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
26 1 0.02
27 20 0.35
28 22 0.39
29 14 0.25
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (27 bp):
CCACTAGGCCCAATCACATTCATATGG
Found at i:68044867 original size:16 final size:16
Alignment explanation
Indices: 68044833--68044867 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68044823 GTAGCCAAAC
*
68044833 TTTCAACTTTTCGGCA
1 TTTCAACTTTGCGGCA
*
68044849 TTTCAACTTTGCGGGA
1 TTTCAACTTTGCGGCA
68044865 TTT
1 TTT
68044868 GCCGATCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (16 bp):
TTTCAACTTTGCGGCA
Found at i:68048320 original size:43 final size:42
Alignment explanation
Indices: 68048234--68048357 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
68048224 TTTTTATCCT
* *
68048234 AAAATAATAATTTAAAAA-TGATAAGATAATCTTGGGTTGTTG
1 AAAA-AATAATTTAAAAAGAGATAAGATAAACTTGGGTTGTTG
* * * *
68048276 AAAAAATAATTTAAAAAGAGAAGAAGATAACCTTAGGTTTTTG
1 AAAAAATAATTTAAAAAGAG-ATAAGATAAACTTGGGTTGTTG
* * *
68048319 AAAGAAGAATTTAAAAGGAGGATAAGATAAACTTGGGTT
1 AAAAAATAATTTAAAAAGA-GATAAGATAAACTTGGGTT
68048358 CTTAGATTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 13 0.19
42 5 0.07
43 49 0.72
44 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.19, T:0.29
Consensus pattern (42 bp):
AAAAAATAATTTAAAAAGAGATAAGATAAACTTGGGTTGTTG
Found at i:68052036 original size:134 final size:133
Alignment explanation
Indices: 68051797--68052046 Score: 360
Period size: 134 Copynumber: 1.9 Consensus size: 133
68051787 TAAATGGGTA
* ** *
68051797 TGCTCACACAAGTTGATAGTCCGAATGTAATTACACGATACCGCTCACACAAGCTGGTGAGTATC
1 TGCTCACACAAGTAGATAGTAAGAATGTAATTACACGATACCGCTCACACAAGCTGATGAGTATC
* * *
68051862 TATAACAAATGTCAAAACCCAACCATCGGTAGGACATTCAAGACCAGCACCTTGAACATAGTAAC
66 TACAACAAATGTCAAAACCCAACCATCGATAGGACATTCAAGACAAGCACCTTGAACATAGTAAC
68051927 CTC
131 CTC
* * *
68051930 TGCTCACACAAGTAGATGGTAAGAATGTAAGTTACACGAT-GCGACTCATACAAGCTGATGAGTA
1 TGCTCACACAAGTAGATAGTAAGAATGTAA-TTACACGATACCG-CTCACACAAGCTGATGAGTA
*
68051994 TCTACAACAAATGTC-GAACCTCAACCATCGATAGGACATTCAAGACAAGCACC
64 TCTACAACAAATGTCAAAACC-CAACCATCGATAGGACATTCAAGACAAGCACC
68052047 CGAAGCGTGG
Statistics
Matches: 103, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
133 32 0.31
134 71 0.69
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (133 bp):
TGCTCACACAAGTAGATAGTAAGAATGTAATTACACGATACCGCTCACACAAGCTGATGAGTATC
TACAACAAATGTCAAAACCCAACCATCGATAGGACATTCAAGACAAGCACCTTGAACATAGTAAC
CTC
Found at i:68053393 original size:33 final size:34
Alignment explanation
Indices: 68053333--68053401 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 34
68053323 CTTTTAGAGA
68053333 GAAAGAAATGAGAAAAAGGCAAGATGAAAGTTGG
1 GAAAGAAATGAGAAAAAGGCAAGATGAAAGTTGG
*
68053367 GAAAGAAATGAG-AAAATGCAAGATGAAAGTTGG
1 GAAAGAAATGAGAAAAAGGCAAGATGAAAGTTGG
68053400 GA
1 GA
68053402 CACTATAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 22 0.65
34 12 0.35
ACGTcount: A:0.52, C:0.03, G:0.32, T:0.13
Consensus pattern (34 bp):
GAAAGAAATGAGAAAAAGGCAAGATGAAAGTTGG
Found at i:68054648 original size:11 final size:11
Alignment explanation
Indices: 68054632--68054656 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
68054622 CATCAATAGC
68054632 CTATGGAACTA
1 CTATGGAACTA
68054643 CTATGGAACTA
1 CTATGGAACTA
68054654 CTA
1 CTA
68054657 CGATCAATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (11 bp):
CTATGGAACTA
Found at i:68056905 original size:48 final size:48
Alignment explanation
Indices: 68056834--68057160 Score: 363
Period size: 48 Copynumber: 6.8 Consensus size: 48
68056824 TTTGGGTGAT
* *
68056834 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACAAC
1 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACAAC
* * * * ***
68056882 ATGAGAGCCAATGTAAGACCATGTATGGGATATGGCATCGGCCACCTT
1 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACAAC
68056930 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACAAC
1 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACAAC
* * * ** *
68056978 ATGAGAGCTAGTGTAAG-CTCATGTTTGGGACATGGCA-TCGACATTGAT
1 ATGAGAGCCAGTGTAAGAC-CATGTTTGGGACATGGCATTGGCCA-CAAC
* * * ***
68057026 AT-ATGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACCTT
1 ATGA-GAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACAAC
* *
68057074 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTTGGCCTCAAC
1 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCA-TTGGCCACAAC
* **
68057123 ATGTGAGCCAGTGTAAGACCATGTTTGAAACATGGCAT
1 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
68057161 CGAGAATTCA
Statistics
Matches: 232, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
47 6 0.03
48 182 0.78
49 44 0.19
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACAAC
Found at i:68057094 original size:144 final size:145
Alignment explanation
Indices: 68056893--68057163 Score: 447
Period size: 144 Copynumber: 1.9 Consensus size: 145
68056883 TGAGAGCCAA
* *
68056893 TGTAAGACCATGTATGGGATATGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTATGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGG
* **
68056958 GACATGGCA-TTGGCCACAACATGAGAGCTAGTGTAAG-CTCATGTTTGGGACATGGCATCGACA
66 GACATGGCATTTGGCCACAACATGAGAGCCAGTGTAAGAC-CATGTTTGAAACATGGCATCGACA
68057021 TTGATATATGTGCTAG
130 TTGATATATGTGCTAG
*
68057037 TGTAAGACCATGTTTGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTATGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGG
* *
68057102 GACATGGCATTTGGCCTCAACATGTGAGCCAGTGTAAGACCATGTTTGAAACATGGCATCGA
66 GACATGGCATTTGGCCACAACATGAGAGCCAGTGTAAGACCATGTTTGAAACATGGCATCGA
68057164 GAATTCACTC
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
144 71 0.61
145 45 0.38
146 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (145 bp):
TGTAAGACCATGTATGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATTTGGCCACAACATGAGAGCCAGTGTAAGACCATGTTTGAAACATGGCATCGACAT
TGATATATGTGCTAG
Found at i:68073536 original size:30 final size:30
Alignment explanation
Indices: 68073501--68073559 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
68073491 TTTACGAGCA
* *
68073501 TAGGGGTAAAATAGTAATTTTGTAAAAATC
1 TAGGGGCAAAATAGTAATTTTGCAAAAATC
* *
68073531 TAGGGGCAAAATGGTCATTTTGCAAAAAT
1 TAGGGGCAAAATAGTAATTTTGCAAAAAT
68073560 ATGATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATAGTAATTTTGCAAAAATC
Found at i:68073989 original size:48 final size:48
Alignment explanation
Indices: 68073937--68074304 Score: 319
Period size: 48 Copynumber: 7.7 Consensus size: 48
68073927 TGTGTGTGCT
* * *
68073937 AGTGTAAGACTATGGCTGGGACATGGCATCGACCACAACATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCC
* * * ***
68073985 AGTGTAAGACCATGTCTGGGACATGTCATTGGCCACCTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCC
* *
68074033 AGTGTATGACCATGTTTGGGACATGGCATC-AGCCACAACATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CCACAACATGAGAGCC
* * * ** * * *
68074081 AATGTAAGACCATGTTTGGGACATGGCATC-AGCATTGACATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CAACATGAGAGCC
** ** * * * *
68074129 AGTGTAAGACCATGTCTGGGACATGGCATCG-GTATTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CAACATGAGAGCC
* * ***
68074177 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACCTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCC
* * * * * *
68074225 AGTGTAAGACCATGTTTGGGACATGGCATTGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCC
* * *
68074273 AGTGCAAGACCATGTTTGGAACATGGCATCGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA
68074305 TAATCCAGCC
Statistics
Matches: 268, Mismatches: 48, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
47 2 0.01
48 265 0.99
49 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCC
Found at i:68074053 original size:96 final size:96
Alignment explanation
Indices: 68073937--68074303 Score: 393
Period size: 96 Copynumber: 3.8 Consensus size: 96
68073927 TGTGTGTGCT
* ** * *
68073937 AGTGTAAGACTATGGCTGGGACATGGCATCGACCACAACATAAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGACCACAACATGAGAGCCAGTGTAAGACCATGTTT
* *
68074002 GGGACATGTCATTGGCCACCTTATGAGAGCC
66 GGGACATGGCATCGGCCACCTTATGAGAGCC
* *
68074033 AGTGTATGACCATGTTTGGGACATGGCATC-AGCCACAACATGAGAGCCAATGTAAGACCATGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGA-CCACAACATGAGAGCCAGTGTAAGACCATGTT
* * * *
68074097 TGGGACATGGCATCAG-CA--TTGACATGTGTGCT
65 TGGGACATGGCATCGGCCACCTT---ATGAGAGCC
* ** ** * * * *
68074129 AGTGTAAGACCATGTCTGGGACATGGCATCG-GTATTGATATGTGTGCTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGACCA-CAACATGAGAGCCAGTGTAAGACCATGTT
68074193 TGGGACATGGCATCGGCCACCTTATGAGAGCC
65 TGGGACATGGCATCGGCCACCTTATGAGAGCC
* * * * * *
68074225 AGTGTAAGACCATGTTTGGGACATGGCATTGGCCTCGACATGTGAGCCAGTGCAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGACCACAACATGAGAGCCAGTGTAAGACCATGTTT
*
68074290 GGAACATGGCATCG
66 GGGACATGGCATCG
68074304 ATAATCCAGC
Statistics
Matches: 222, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
93 2 0.01
95 4 0.02
96 212 0.95
97 2 0.01
99 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (96 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGACCACAACATGAGAGCCAGTGTAAGACCATGTTT
GGGACATGGCATCGGCCACCTTATGAGAGCC
Found at i:68074139 original size:144 final size:143
Alignment explanation
Indices: 68073939--68074303 Score: 419
Period size: 144 Copynumber: 2.5 Consensus size: 143
68073929 TGTGTGCTAG
* ** * * **
68073939 TGTAAGACTATGGCTGGGACATGGCATCGACCA-CAACATAAGAGCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTTTGGGACATGGCATC-AGCATCGACATGTGAGCCAGTGTAAGACCATGTCTG
* * *
68074003 GGACATGTCATTGGCCACCT-TATGAGAGCCAGTGTATGACCATGTTTGGGACATGGCATCAGCC
65 GGACATGGCATCGG-CA-CTATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCC
68074067 ACAACATGAGAGCCAA
128 ACAACATGAGAGCCAA
* * *
68074083 TGTAAGACCATGTTTGGGACATGGCATCAGCATTGACATGTGTGCTAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGTGAGCCAGTGTAAGACCATGTCTGG
* * * * * *
68074148 GACATGGCATCGGTATTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
66 GACATGGCATCGGCACT-ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCAC
*** *
68074213 CTTATGAGAGCCAG
130 AACATGAGAGCCAA
** * * *
68074227 TGTAAGACCATGTTTGGGACATGGCATTGGCCTCGACATGTGAGCCAGTGCAAGACCATGTTTGG
1 TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGTGAGCCAGTGTAAGACCATGTCTGG
*
68074292 AACATGGCATCG
66 GACATGGCATCG
68074304 ATAATCCAGC
Statistics
Matches: 186, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
142 1 0.01
143 4 0.02
144 181 0.97
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (143 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGCATCGACATGTGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCACTATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACA
ACATGAGAGCCAA
Found at i:68082463 original size:40 final size:39
Alignment explanation
Indices: 68082372--68082522 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 39
68082362 TGGATGAAAA
* ** * *
68082372 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
68082411 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
68082451 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* *
68082491 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
68082523 AGTTATATCC
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 31 0.31
40 65 0.65
41 2 0.02
42 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68084112 original size:22 final size:23
Alignment explanation
Indices: 68084078--68084126 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
68084068 TACTAACATG
*
68084078 TATATATACTATATATTTTTAT-
1 TATATATACTATACATTTTTATA
68084100 TATAT-TACGTATACATTTTTATA
1 TATATATAC-TATACATTTTTATA
68084123 TATA
1 TATA
68084127 CGCCATGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 3 0.12
22 17 0.71
23 4 0.17
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (23 bp):
TATATATACTATACATTTTTATA
Found at i:68091319 original size:48 final size:48
Alignment explanation
Indices: 68091170--68091487 Score: 261
Period size: 48 Copynumber: 6.6 Consensus size: 48
68091160 GGTAAAATGT
* * * * * *
68091170 CGATGCCATGTCCCGGGCATGGTCTTACACTAGCTCTCAT-A-CGGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCATAATCAG-GC
* *** *
68091217 CGATGCCATGTCCTAGACATGGTCTTACACTGACACGT-ATAA-CAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGGTC-TCATAATC-AGGC
* * * * * *
68091265 CAATGCCATGTTCCAAAAATGGTCTTACACTGGGTCGCATATTCAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCATAATCAGGC
* * * **
68091313 CGATGCCATGTCCTAGACATGGTCTTACCCTGGATCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCATAATCAGGC
* * * *
68091361 CGATGCCATGTCCCAGACATGGTTTTACACT-AGTACACAT-ATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGGT-CTCATAATC-AGGC
* * * ***
68091409 CGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCATAATCAGGC
68091457 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
68091488 AGTACACATA
Statistics
Matches: 212, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
47 35 0.17
48 173 0.82
49 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCATAATCAGGC
Found at i:68091367 original size:96 final size:95
Alignment explanation
Indices: 68091170--68091502 Score: 345
Period size: 96 Copynumber: 3.5 Consensus size: 95
68091160 GGTAAAATGT
* * * *** *
68091170 CGATGCCATGTCCCGGGCATGGTCTTACACTAGCT-CTCATA-CGGTGTCGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-TACACATATCAACGCCGATGCCATGTCCTAG
* **
68091233 ACATGGTCTTACACT-GA-CACGTATAACAATGC
65 ACATGGTCTTACACTGGATCTC--ATAA-TGTGC
* * * * * * *
68091265 CAATGCCATGTTCCAAAAATGGTCTTACACTGGGT-CGCATATTC-AGGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-AGTACACATA-TCAACGCCGATGCCATGTCCTA
*
68091328 GACATGGTCTTACCCTGGATCTCATAATGTGGC
64 GACATGGTCTTACACTGGATCTCATAATGT-GC
* * *
68091361 CGATGCCATGTCCCAGACATGGTTTTACACTAGTACACATATCAACGCCGGTGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGTACACATATCAACGCCGATGCCATGTCCTAGA
* *
68091426 CATGGTCTTACACTGGCTCTTATAATGTTGC
66 CATGGTCTTACACTGGATCTCATAATG-TGC
68091457 CGATGCCATGTCCCAGACATGGTCTTACACTAGTACACATATCAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGTACACATATCAAC
68091503 CAAATGTCTT
Statistics
Matches: 200, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
95 36 0.18
96 158 0.79
97 4 0.02
98 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGTACACATATCAACGCCGATGCCATGTCCTAGA
CATGGTCTTACACTGGATCTCATAATGTGC
Found at i:68091431 original size:144 final size:142
Alignment explanation
Indices: 68091170--68091489 Score: 372
Period size: 144 Copynumber: 2.2 Consensus size: 142
68091160 GGTAAAATGT
* * * * * *
68091170 CGATGCCATGTCCCGGGCATGGTCTTACACTAGCTCTCATACGGTGTCGATGCCATGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCATAAGGTGCCGATGCCATGTCCCAGAC
* * *
68091235 ATGGTCTTACACTGACACGTATAACAATGCCAATGCCATGTTCCAAAAATGGTCTTACACTGGGT
66 ATGGTCTTACACTGACACG-ATAACAACGCCAATGCCATGTCCCAAAAATGGTCTTACACTGGCT
*
68091300 CGCATATTCAGGC
130 CGCATAATCAGGC
* * * *
68091313 CGATGCCATGTCCTAGACATGGTCTTACCCTGGATCTCATAATGTGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCATAAGGT-GCCGATGCCATGTCCCAGA
* * ** * *
68091378 CATGGTTTTACACTAGTACAC-ATATCAACGCCGGTGCCATGTCCCAGACATGGTCTTACACTGG
65 CATGGTCTTACACT-G-ACACGATAACAACGCCAATGCCATGTCCCAAAAATGGTCTTACACTGG
** ***
68091442 CTCTTATAATGTTGC
128 CTCGCATAATCAGGC
68091457 CGATGCCATGTCCCAGACATGGTCTTACACTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG
68091490 TACACATATC
Statistics
Matches: 146, Mismatches: 28, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
143 37 0.25
144 104 0.71
145 1 0.01
146 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (142 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCATAAGGTGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACACGATAACAACGCCAATGCCATGTCCCAAAAATGGTCTTACACTGGCTC
GCATAATCAGGC
Found at i:68093616 original size:114 final size:114
Alignment explanation
Indices: 68093487--68093692 Score: 272
Period size: 114 Copynumber: 1.8 Consensus size: 114
68093477 AAAATGTCAC
* ** * * *
68093487 TAAAAGATTCAGCCGAACGACATCGTTTGCATTGAGCTTAT-GTAGCATTAGA-GGTGCTTTCCT
1 TAAAAGATTAAGCCGAACGACATCGTTTAAATCGAGCTT-TCGTAGAATTA-ACGGCGCTTTCCT
68093550 AAAAACGCCACAATAAATCGAACATTAGTAGTTTTTTTAAGAAAGCGCTGG
64 AAAAACGCCACAATAAATCGAACATTAGTAGTTTTTTTAAGAAAGCGCTGG
* *
68093601 TAAAAGATTAAGCCGAACGACGTCGTTTAAATCGAGCTTTCGTGGAATTAACGGCGCTTTCCTAA
1 TAAAAGATTAAGCCGAACGACATCGTTTAAATCGAGCTTTCGTAGAATTAACGGCGCTTTCCTAA
* * * *
68093666 AAATGCCGCAATAGATCGAGCATTAGT
66 AAACGCCACAATAAATCGAACATTAGT
68093693 GGCGTTTCTA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
113 2 0.03
114 76 0.97
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (114 bp):
TAAAAGATTAAGCCGAACGACATCGTTTAAATCGAGCTTTCGTAGAATTAACGGCGCTTTCCTAA
AAACGCCACAATAAATCGAACATTAGTAGTTTTTTTAAGAAAGCGCTGG
Found at i:68094459 original size:120 final size:120
Alignment explanation
Indices: 68094246--68094486 Score: 455
Period size: 120 Copynumber: 2.0 Consensus size: 120
68094236 GGTAACTATC
68094246 TATTTTGGATAGGACCAAATTATAACAAATTAAATAAGGTCTTATTTTTATTTTGAATTTGATTG
1 TATTTTGGATAGGACCAAATTATAACAAATTAAATAAGGTCTTATTTTTATTTTGAATTTGATTG
*
68094311 TATTTCGAACATATCTGAAACCGACTTTATAATCAATATAAATTAACTACACCAT
66 TATTTCGAACATATCTGAAACCGACTTTATAAACAATATAAATTAACTACACCAT
*
68094366 TATTTTGGATAGGACCAAATTATAACAAATTAAATAAGGTCTTATTTTTATTTTGAATTTGATTT
1 TATTTTGGATAGGACCAAATTATAACAAATTAAATAAGGTCTTATTTTTATTTTGAATTTGATTG
*
68094431 TATTTCGAGCATATCTGAAACCGACTTTATAAACAATATAAATTAACTACACCAT
66 TATTTCGAACATATCTGAAACCGACTTTATAAACAATATAAATTAACTACACCAT
68094486 T
1 T
68094487 CAGTTAGCTA
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (120 bp):
TATTTTGGATAGGACCAAATTATAACAAATTAAATAAGGTCTTATTTTTATTTTGAATTTGATTG
TATTTCGAACATATCTGAAACCGACTTTATAAACAATATAAATTAACTACACCAT
Found at i:68094864 original size:15 final size:15
Alignment explanation
Indices: 68094821--68094872 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
68094811 CTCAAATCAT
*
68094821 AAACCCTTAAAACTCC
1 AAACCCTT-AAACCCC
* *
68094837 AAACAC-AAAACCCC
1 AAACCCTTAAACCCC
*
68094851 AACCCCTTAAACCCC
1 AAACCCTTAAACCCC
68094866 AAACCCT
1 AAACCCT
68094873 AACACTAACC
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
14 10 0.36
15 13 0.46
16 5 0.18
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACCCTTAAACCCC
Found at i:68094967 original size:22 final size:22
Alignment explanation
Indices: 68094915--68094967 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
68094905 CTTAAATTCC
68094915 AAACCCT-AAACTATAAACCAT
1 AAACCCTAAAACTATAAACCAT
* *
68094936 AAATCATAAAATCT-TAAACCAT
1 AAACCCTAAAA-CTATAAACCAT
68094958 AAACCCTAAA
1 AAACCCTAAA
68094968 TTCTAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 5 0.19
22 19 0.73
23 2 0.08
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.21
Consensus pattern (22 bp):
AAACCCTAAAACTATAAACCAT
Found at i:68098181 original size:27 final size:27
Alignment explanation
Indices: 68098151--68098204 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
68098141 TTTATGTTAG
68098151 ATATATATCATATAATAACTTACATAA
1 ATATATATCATATAATAACTTACATAA
68098178 ATATATATCATATAATAACTTACATAA
1 ATATATATCATATAATAACTTACATAA
68098205 CTTACATAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (27 bp):
ATATATATCATATAATAACTTACATAA
Found at i:68098203 original size:14 final size:14
Alignment explanation
Indices: 68098159--68098203 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
68098149 AGATATATAT
68098159 CATATAATAACTTA
1 CATATAATAACTTA
68098173 CATA-AAT-A-TATA
1 CATATAATAACT-TA
68098185 TCATATAATAACTTA
1 -CATATAATAACTTA
68098200 CATA
1 CATA
68098204 ACTTACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
11 1 0.04
12 3 0.12
13 7 0.27
14 11 0.42
15 3 0.12
16 1 0.04
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (14 bp):
CATATAATAACTTA
Found at i:68098204 original size:9 final size:9
Alignment explanation
Indices: 68098192--68098241 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
68098182 ATATCATATA
68098192 ATAACTTAC
1 ATAACTTAC
68098201 ATAACTTAC
1 ATAACTTAC
68098210 ATAACTTAC
1 ATAACTTAC
68098219 -TAAACTTAC
1 AT-AACTTAC
*
68098228 TTAACTTAC
1 ATAACTTAC
*
68098237 GTAAC
1 ATAAC
68098242 ACATAAATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
8 1 0.03
9 36 0.95
10 1 0.03
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:68099169 original size:31 final size:31
Alignment explanation
Indices: 68099131--68099271 Score: 219
Period size: 31 Copynumber: 4.5 Consensus size: 31
68099121 TTTAACGGTT
68099131 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
68099162 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
68099193 ACTGGGCCGAAGCCTTATCATAAATCATACC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
**
68099224 ACTAAGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
68099255 ATTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
68099272 ACTGTAAACG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:68099505 original size:24 final size:25
Alignment explanation
Indices: 68099478--68099534 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
68099468 CTGGAGGCCT
68099478 AGCCTCTTTTAAT-AACTGGGGAAA
1 AGCCTCTTTTAATAAACTGGGGAAA
* *
68099502 AGCC-CTTTTGATAAACTGGGGCAA
1 AGCCTCTTTTAATAAACTGGGGAAA
68099526 AG-CTCTTTT
1 AGCCTCTTTT
68099535 CGGTAAACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 8 0.28
24 21 0.72
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (25 bp):
AGCCTCTTTTAATAAACTGGGGAAA
Found at i:68099509 original size:23 final size:24
Alignment explanation
Indices: 68099478--68099585 Score: 74
Period size: 25 Copynumber: 4.4 Consensus size: 24
68099468 CTGGAGGCCT
68099478 AGCCTCTTTTAAT-AACTGGGGAAA
1 AGCC-CTTTTAATAAACTGGGGAAA
* *
68099502 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGAAA
* ** * *
68099526 AGCTCTTTTCGGTAAACTGAGGCAA
1 AGCCCTTTT-AATAAACTGGGGAAA
*** * *
68099551 AGCCCTTCTCGGTAAACTGGGGCAT
1 AGCCCTT-TTAATAAACTGGGGAAA
68099576 AGCCCTTTTA
1 AGCCCTTTTA
68099586 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
23 7 0.10
24 23 0.33
25 39 0.56
26 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGAAA
Found at i:68099549 original size:25 final size:25
Alignment explanation
Indices: 68099491--68099584 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
68099481 CTCTTTTAAT
* *
68099491 AACTGGGGAAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
68099515 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
68099540 AACTGAGGCAAAGCCCTTCTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
68099565 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
68099585 AGCACTTCCT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 18 0.30
25 42 0.70
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:68100786 original size:80 final size:81
Alignment explanation
Indices: 68100599--68100806 Score: 269
Period size: 80 Copynumber: 2.6 Consensus size: 81
68100589 TTTGTAAATC
** ** *
68100599 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACTAGTGGTATTT
*
68100663 TGGTAATTTTACAAACT
65 TGGTAATTTTACAAACG
* *
68100680 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAGACTAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGTGGTATTTT
* *
68100744 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAACG
* *
68100761 A-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
68100807 GTAAATCGAG
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 62 0.55
81 50 0.44
82 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGTGGTATTTT
GGTAATTTTACAAACG
Found at i:68100819 original size:27 final size:27
Alignment explanation
Indices: 68100488--68100958 Score: 241
Period size: 27 Copynumber: 17.4 Consensus size: 27
68100478 TTTCACCCTA
* * * * *
68100488 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
68100515 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** *
68100542 CAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
* *
68100571 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* *
68100598 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * *
68100625 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
68100651 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* * *
68100678 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * *
68100706 CAGGGGTATTTTAGTAATTTTATAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
68100732 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* *
68100759 CGAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
68100786 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ***** *
68100813 CGAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
****** *
68100840 CAAGGGTAAAACAATAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * *
68100867 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * *
68100894 CGAGGGTAAAATGATAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
68100921 CGAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
68100948 CGAGGGTATTT
1 CAAGGGTATTT
68100959 CAAAATATTG
Statistics
Matches: 365, Mismatches: 69, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
26 25 0.07
27 309 0.85
28 16 0.04
29 14 0.04
30 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:68106962 original size:13 final size:14
Alignment explanation
Indices: 68106946--68106974 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68106936 TTATAAATAT
68106946 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
68106959 TTATAATGGTTTAA
1 TTATAATGGTTTAA
68106973 TT
1 TT
68106975 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:68107435 original size:27 final size:26
Alignment explanation
Indices: 68107388--68107439 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
68107378 GGTGGCAACA
*
68107388 GCAGCAGCGAGGGAGGCGGAGGCAGAG
1 GCAGCAGCGAGGCAGGCGGA-GCAGAG
*
68107415 GCAGCAGCGATGGCA-GTGGAGCAGA
1 GCAGCAGCGA-GGCAGGCGGAGCAGA
68107440 ACAGAAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 5 0.23
27 14 0.64
28 3 0.14
ACGTcount: A:0.27, C:0.19, G:0.50, T:0.04
Consensus pattern (26 bp):
GCAGCAGCGAGGCAGGCGGAGCAGAG
Found at i:68107698 original size:33 final size:33
Alignment explanation
Indices: 68107659--68107737 Score: 108
Period size: 31 Copynumber: 2.5 Consensus size: 33
68107649 AGATTTAATT
* * *
68107659 TTTTTGGTTGTATTTTTTATGCTACATTTGCTG
1 TTTTTGGTTGGATTTTTCACGCTACATTTGCTG
*
68107692 TTTTTGGTTGGA--TTTCACGCTATATTTGCTG
1 TTTTTGGTTGGATTTTTCACGCTACATTTGCTG
68107723 TTTTTGGTTGGATTT
1 TTTTTGGTTGGATTT
68107738 AATGCAGGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
31 28 0.70
33 12 0.30
ACGTcount: A:0.11, C:0.09, G:0.22, T:0.58
Consensus pattern (33 bp):
TTTTTGGTTGGATTTTTCACGCTACATTTGCTG
Found at i:68107722 original size:31 final size:31
Alignment explanation
Indices: 68107679--68107737 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
68107669 TATTTTTTAT
68107679 GCTACATTTGCTGTTTTTGGTTGGATTTCAC
1 GCTACATTTGCTGTTTTTGGTTGGATTTCAC
*
68107710 GCTATATTTGCTGTTTTTGGTTGGATTT
1 GCTACATTTGCTGTTTTTGGTTGGATTT
68107738 AATGCAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.53
Consensus pattern (31 bp):
GCTACATTTGCTGTTTTTGGTTGGATTTCAC
Found at i:68107874 original size:43 final size:43
Alignment explanation
Indices: 68107827--68107923 Score: 124
Period size: 43 Copynumber: 2.2 Consensus size: 43
68107817 CACTAAAATT
68107827 CATGACTTTTAGCGGCGCTTCCCCCA-CAAACGCCGCTAAAAGC
1 CATGACTTTTAGCGGCGCTT-CCCCAGCAAACGCCGCTAAAAGC
* ** * *
68107870 CATGACTTTTAGTGGCGCTTTTCCAGCAGACGCCGCTAAAAGT
1 CATGACTTTTAGCGGCGCTTCCCCAGCAAACGCCGCTAAAAGC
68107913 CATGATCTTTT
1 CATGA-CTTTT
68107924 GTGGCATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
42 3 0.06
43 39 0.83
44 5 0.11
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (43 bp):
CATGACTTTTAGCGGCGCTTCCCCAGCAAACGCCGCTAAAAGC
Found at i:68110793 original size:20 final size:20
Alignment explanation
Indices: 68110743--68110794 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
68110733 ATCTGATCGT
68110743 ACACGCTCGTGTGGCTCAAG
1 ACACGCTCGTGTGGCTCAAG
* * * *
68110763 ACTCACCCGTGTGGCTCAGG
1 ACACGCTCGTGTGGCTCAAG
68110783 ACACGCTCGTGT
1 ACACGCTCGTGT
68110795 CCTCCACCTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.21
Consensus pattern (20 bp):
ACACGCTCGTGTGGCTCAAG
Found at i:68112637 original size:48 final size:47
Alignment explanation
Indices: 68112514--68112802 Score: 183
Period size: 48 Copynumber: 5.9 Consensus size: 47
68112504 AAAAGGGTAA
* * *
68112514 AATGCCGATGCCATGTCTCGGACATGGTCTTACACTGGCTC-TCAT-AC
1 AATGCCGATGCCATGTC-CAGACATGGTCTTACACTGACACAT-ATAAC
* *
68112561 ATTGGTGCCGGTGCCATGTCCTAGACATGGTCTTACACTGACACATATAAC
1 A---ATGCCGATGCCATGTCC-AGACATGGTCTTACACTGACACATATAAC
* * * **
68112612 AATGCCGATGCCATGCTCCAAACATGGTCTTACACTGACTCACATATT
1 AATGCCGATGCCATG-TCCAGACATGGTCTTACACTGACACATATAAC
* * *
68112660 GAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAT--C
1 AATGCCGATGCCATGT-CCAGACATGGTCTTACACT-G-ACACATATAAC
* * * * * * * *
68112708 GACGCCGGTGCCATGTCCCAGACAGGGTCTTATACTGGCTC-TCATAAT
1 AATGCCGATGCCATGT-CCAGACATGGTCTTACACTGACACAT-ATAAC
** * *
68112756 GTTGCCGATGTCATGTCCCAGACATGGTCCTACACTAGCACACATAT
1 AATGCCGATGCCATGT-CCAGACATGGTCTTACACT-G-ACACATAT
68112803 CAACCAAATG
Statistics
Matches: 190, Mismatches: 36, Indels: 29
0.75 0.14 0.11
Matches are distributed among these distances:
45 1 0.01
46 4 0.02
47 3 0.02
48 126 0.66
49 6 0.03
50 45 0.24
51 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCAGACATGGTCTTACACTGACACATATAAC
Found at i:68112737 original size:96 final size:95
Alignment explanation
Indices: 68112517--68112806 Score: 334
Period size: 96 Copynumber: 3.0 Consensus size: 95
68112507 AGGGTAAAAT
* * *
68112517 GCCGATGCCATGTCTCGGACATGGTCTTACACTGGCTCTCATACATTGGTGCCGGTGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT--ATTGG-GCCGATGCCATGTCC
* *
68112582 TAGACATGGTCTTACACT-G-ACACATATAACAAT
63 CAGACATGGTCTTACACTAGCACACATAT--CAAC
* * * *
68112615 GCCGATGCCATG-CTCCAAACATGGTCTTACACTGACTCACATATTGAGGCTGATGCCATGTCCC
1 GCCGATGCCATGTC-CCAGACATGGTCTTACACTGGCTCTCATATTG-GGCCGATGCCATGTCCC
*
68112679 AGACATGGTCTTACACTAGCACACATATCGAC
64 AGACATGGTCTTACACTAGCACACATATCAAC
* * * * * *
68112711 GCCGGTGCCATGTCCCAGACAGGGTCTTATACTGGCTCTCATAATGTTGCCGATGTCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTG-GGCCGATGCCATGTCCCA
*
68112776 GACATGGTCCTACACTAGCACACATATCAAC
65 GACATGGTCTTACACTAGCACACATATCAAC
68112807 CAAATGTCTT
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
96 117 0.71
97 4 0.02
98 43 0.26
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCACACATATCAAC
Found at i:68112800 original size:144 final size:145
Alignment explanation
Indices: 68112520--68112802 Score: 322
Period size: 144 Copynumber: 2.0 Consensus size: 145
68112510 GTAAAATGCC
* * * * * * ** *
68112520 GATGCCATGTCTCGGACATGGTCTTACACTGGCTCTCATACATTGGTGCCGGTGCCATGTCCTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATA-ATCGACGCCGGTGCCATGTCCCAG
* *
68112585 ACATGGTCTTACACTGACACATATAACAATGCCGATGCCATGCTCCAAACATGGTCTTACACTGA
65 ACAGGGTCTTACACTGACACATATAACAATGCCGATGCCATGCTCCAAACATGGTCCTACACTGA
*
68112650 CTCACATATTGAGGCT
130 CACACATATTGAGGCT
68112666 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCGACGCCGGTGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAATCGACGCCGGTGCCATGTCCCAGA
* * * *** * *
68112730 CAGGGTCTTATACTGGCTC-TCATAATGTTGCCGATGTCATG-TCCCAGACATGGTCCTACACT-
66 CAGGGTCTTACACTGACACAT-ATAACAATGCCGATGCCATGCT-CCAAACATGGTCCTACACTG
68112792 AGCACACATAT
129 A-CACACATAT
68112803 CAACCAAATG
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
143 3 0.03
144 77 0.68
146 34 0.30
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (145 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAATCGACGCCGGTGCCATGTCCCAGA
CAGGGTCTTACACTGACACATATAACAATGCCGATGCCATGCTCCAAACATGGTCCTACACTGAC
ACACATATTGAGGCT
Found at i:68121670 original size:26 final size:26
Alignment explanation
Indices: 68121628--68121689 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
68121618 ACCAAAATCA
*
68121628 CATTTCC-TTTGAACACTTACCCTTT
1 CATTTCCTTTTGAACACTTACCATTT
68121653 CATTTCCTTTTGAACACTTACCATTT
1 CATTTCCTTTTGAACACTTACCATTT
**
68121679 TGTTTCCTTTT
1 CATTTCCTTTT
68121690 TATAATCATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 7 0.21
26 26 0.79
ACGTcount: A:0.18, C:0.27, G:0.05, T:0.50
Consensus pattern (26 bp):
CATTTCCTTTTGAACACTTACCATTT
Found at i:68127960 original size:40 final size:40
Alignment explanation
Indices: 68127905--68127988 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
68127895 CAGATGATAA
* * *
68127905 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGATAAGTCCCGAAGGCATTTGAGCGA-ATAGCTATAT
68127945 CCGGGATAAGTCCCGAAGGCATTTGAGCGAATAGCTATAT
1 CCGGGATAAGTCCCGAAGGCATTTGAGCGAATAGCTATAT
68127985 CCGG
1 CCGG
68127989 CTAAATCCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGATAAGTCCCGAAGGCATTTGAGCGAATAGCTATAT
Found at i:68131891 original size:22 final size:22
Alignment explanation
Indices: 68131861--68131912 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
68131851 ATAAGAAAAT
*
68131861 AAATAAATTGCGTAAAAGAATA
1 AAATGAATTGCGTAAAAGAATA
68131883 AAATGAATTGCGTAAAAGAATA
1 AAATGAATTGCGTAAAAGAATA
68131905 AAA-GAATT
1 AAATGAATT
68131913 TGTTGATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.58, C:0.04, G:0.15, T:0.23
Consensus pattern (22 bp):
AAATGAATTGCGTAAAAGAATA
Found at i:68135327 original size:48 final size:47
Alignment explanation
Indices: 68135274--68135382 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 47
68135264 CTTCTTCCCT
* * *
68135274 CTTTCTCAATCGGTTTTTCTTTGGCCGATTGCTT-CTAGGTCTTTTTCC
1 CTTTCTCAATCGGTTTTCCCTTGACCGATTGCTTCCTA--TCTTTTTCC
*
68135322 CTTTCTCAATCGG-TTTCCCTTGACCGATTGCTTCCTATTTTTTTCC
1 CTTTCTCAATCGGTTTTCCCTTGACCGATTGCTTCCTATCTTTTTCC
* *
68135368 CTCTCTCAATAGGTT
1 CTTTCTCAATCGGTT
68135383 CTTGACAGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
46 19 0.36
47 18 0.34
48 16 0.30
ACGTcount: A:0.11, C:0.28, G:0.14, T:0.48
Consensus pattern (47 bp):
CTTTCTCAATCGGTTTTCCCTTGACCGATTGCTTCCTATCTTTTTCC
Found at i:68142533 original size:48 final size:47
Alignment explanation
Indices: 68142479--68142585 Score: 130
Period size: 47 Copynumber: 2.3 Consensus size: 47
68142469 CTTCTTCCCT
*
68142479 CTTTCTCAATCAG-TTTCCCTTTGA-CTGATTGCTTC-TAGTCCTTTTTCC
1 CTTTCTCAATC-GTTTTCCC-TTGATC-GATTACTTCTTA-TCCTTTTTCC
*
68142527 CTTTCTCAATCGTTTTCCCTTGATCGATTACTTCTTATTCTTTTTCC
1 CTTTCTCAATCGTTTTCCCTTGATCGATTACTTCTTATCCTTTTTCC
*
68142574 CTCTCTCAATCG
1 CTTTCTCAATCG
68142586 GTTCTTAGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
47 33 0.62
48 20 0.38
ACGTcount: A:0.13, C:0.30, G:0.08, T:0.49
Consensus pattern (47 bp):
CTTTCTCAATCGTTTTCCCTTGATCGATTACTTCTTATCCTTTTTCC
Found at i:68142884 original size:21 final size:21
Alignment explanation
Indices: 68142858--68142899 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
68142848 ATCCTCTCTT
68142858 GTGTCGAATGTTGATTTGACA
1 GTGTCGAATGTTGATTTGACA
68142879 GTGTCGAATGTTGATTTGACA
1 GTGTCGAATGTTGATTTGACA
68142900 TCATCAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.38
Consensus pattern (21 bp):
GTGTCGAATGTTGATTTGACA
Found at i:68147270 original size:24 final size:25
Alignment explanation
Indices: 68147213--68147273 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
68147203 AGGAATTATG
* *
68147213 AATCGGTATGCTCTTACAAGCTGTA
1 AATCGGTAAGCTCTCACAAGCTGTA
*
68147238 AATTGGTAAGCTCTCACAAGCTG-A
1 AATCGGTAAGCTCTCACAAGCTGTA
*
68147262 AATCAGTAAGCT
1 AATCGGTAAGCT
68147274 TATACGAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (25 bp):
AATCGGTAAGCTCTCACAAGCTGTA
Found at i:68149534 original size:39 final size:39
Alignment explanation
Indices: 68149491--68149673 Score: 285
Period size: 39 Copynumber: 4.7 Consensus size: 39
68149481 GCACGTGGCT
* *
68149491 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
*
68149530 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* * * **
68149569 TGCGGACTTCACGTCCGGATATATTTTCATAATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
68149608 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
*
68149647 TGCGGACCTCATGTCCGGATGTATTTC
1 TGCGGACCTCATGTCCGGATATATTTC
68149674 AAATACCATG
Statistics
Matches: 129, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:68157387 original size:39 final size:39
Alignment explanation
Indices: 68157332--68157551 Score: 341
Period size: 39 Copynumber: 5.6 Consensus size: 39
68157322 GCACGTGGCT
* * *
68157332 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
*
68157371 TGCGAACCTCATGTCCGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
68157410 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
* * *
68157449 TGCGGACTTCATGTCTGAATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
** *
68157488 TGCGGACCTCATGTCCTAATATATTCCCAGCATATAGCT
1 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
*
68157527 TGCGGACCTCATGTCCGGATGTATT
1 TGCGGACCTCATGTCCGGATATATT
68157552 TCAAATACCA
Statistics
Matches: 166, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 166 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
Found at i:68159825 original size:44 final size:44
Alignment explanation
Indices: 68159707--68159832 Score: 139
Period size: 42 Copynumber: 2.9 Consensus size: 44
68159697 TGCATGTAAT
*
68159707 TCAATATCGATGCCTCTGTCCCAGACAAGGTCTTACAC-AAAATC
1 TCAA-ATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAAATC
** * * *
68159751 AGATAT-GATGCCTATGTCCCAGACATGGTCTTACACGTAAATC
1 TCAAATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAAATC
* * * *
68159794 TCAAATCGAGGCCTGTGTTCCAGACACGGTCTTACACGA
1 TCAAATCGATGCCTATGTCCCAGACAAGGTCTTACACGA
68159833 TATCTTAGAT
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
42 28 0.42
43 10 0.15
44 28 0.42
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
TCAAATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAAATC
Found at i:68170649 original size:48 final size:48
Alignment explanation
Indices: 68170572--68171038 Score: 398
Period size: 48 Copynumber: 9.8 Consensus size: 48
68170562 TGGTACATGT
* * * * *
68170572 GAGCCTGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* * * * * * * * *
68170620 GAGCTAGTGTAAAACCATGTCTAGGACATGGCATCAGCCTCAATAGGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* * * *
68170668 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTGTTGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* ** * * * *
68170716 G-GCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* * * *
68170763 GAGCCAGTGTACGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* * * * * * *
68170811 GAGCTACTGTAAAACCATGTCTGGGACATGGGATCGGCCTCAATT-TGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TATTATGA
* * *
68170859 GAGCCAGTGTAAGACCATGTTTTGAACATGGCATCGGCATTATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* * * * * * * * *
68170907 AAGCTAGTGTAAGACCATGTTTGGGACATGCCATTGGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* * * * * **
68170955 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCTTTGTTACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
* *
68171003 GAACCATTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
68171039 ACATCTTACT
Statistics
Matches: 320, Mismatches: 96, Indels: 6
0.76 0.23 0.01
Matches are distributed among these distances:
47 39 0.12
48 279 0.87
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTATTATGA
Found at i:68170867 original size:96 final size:96
Alignment explanation
Indices: 68170568--68171038 Score: 674
Period size: 96 Copynumber: 4.9 Consensus size: 96
68170558 GTTATGGTAC
* * *
68170568 ATGTGAGCCTGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
* *
68170633 ACCATGTCTAGGACATGGCATCAGCCTCAAT
66 ACCATGTCTGGGACATGGCATCGGCCTCAAT
* * * *
68170664 AGGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTGTTGTGAG-GCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
**
68170728 ACCATGTCTGGGACATGGCATTAGCCTCAAT
66 ACCATGTCTGGGACATGGCATCGGCCTCAAT
* * *
68170759 ATGTGAGCCAGTGTACGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTACTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
*
68170824 ACCATGTCTGGGACATGGGATCGGCCTCAAT
66 ACCATGTCTGGGACATGGCATCGGCCTCAAT
* * * *
68170855 TTGTGAGCCAGTGTAAGACCATGTTTTGAACATGGCATCGGCATTATTATGAAAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
* * *
68170920 ACCATGTTTGGGACATGCCATTGGCCTCAAT
66 ACCATGTCTGGGACATGGCATCGGCCTCAAT
* * ** * * *
68170951 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCTTTGTTACAAGAACCATTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
68171016 ACCATGTCTGGGACATGGCATCG
66 ACCATGTCTGGGACATGGCATCG
68171039 ACATCTTACT
Statistics
Matches: 330, Mismatches: 44, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
95 87 0.26
96 243 0.74
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCGGCCTCAAT
Found at i:68170892 original size:191 final size:192
Alignment explanation
Indices: 68170568--68171038 Score: 710
Period size: 191 Copynumber: 2.5 Consensus size: 192
68170558 GTTATGGTAC
* *
68170568 ATGTGAGCCTGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTACTGTAAA
* * *
68170633 ACCATGTCTAGGACATGGCATCAGCCTCAATAGGTGAGCCAGTGTAAGACCATGTTTGGGACATG
66 ACCATGTCTGGGACATGGCATCGGCCTCAATAGGTGAGCCAGTGTAAGACCATGTTTGGAACATG
* * * * *
68170698 GCATCGGTATTGTTGTG-AGGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCAAT
131 GCATCGGCATTATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGCCATTAGCCTCAAT
* *
68170759 ATGTGAGCCAGTGTACGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTACTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTACTGTAAA
* ** *
68170824 ACCATGTCTGGGACATGGGATCGGCCTCAATTTGTGAGCCAGTGTAAGACCATGTTTTGAACATG
66 ACCATGTCTGGGACATGGCATCGGCCTCAATAGGTGAGCCAGTGTAAGACCATGTTTGGAACATG
* *
68170889 GCATCGGCATTATTATGAAAGCTAGTGTAAGACCATGTTTGGGACATGCCATTGGCCTCAAT
131 GCATCGGCATTATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGCCATTAGCCTCAAT
* ** * * * *
68170951 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCTTTGTTACAAGAACCATTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTACTGTAAA
68171016 ACCATGTCTGGGACATGGCATCG
66 ACCATGTCTGGGACATGGCATCG
68171039 ACATCTTACT
Statistics
Matches: 251, Mismatches: 28, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
191 133 0.53
192 118 0.47
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (192 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTACTGTAAA
ACCATGTCTGGGACATGGCATCGGCCTCAATAGGTGAGCCAGTGTAAGACCATGTTTGGAACATG
GCATCGGCATTATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGCCATTAGCCTCAAT
Found at i:68174246 original size:47 final size:46
Alignment explanation
Indices: 68174177--68174305 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 46
68174167 GTTATTGTGA
* * *
68174177 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCACATT-ATGAGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC-CATTGACGAGT
* *
68174223 GCTAGTGTAAAACCATGTTTGGGACATGGCACCGG--CATTGAGACGAGT
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCCATT--GACGAGT
68174271 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC
68174306 TTGAGACATA
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
45 4 0.06
46 17 0.25
47 26 0.38
48 22 0.32
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCCATTGACGAGT
Found at i:68174276 original size:48 final size:46
Alignment explanation
Indices: 68174219--68174312 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 46
68174209 GCCACATTAT
68174219 GAGTGCTAGTGTAAAACCATGTTTGGGACATGGCACCGGCATTGAGAC
1 GAGTGCTAGTGTAAAA-CATGTTTGGGACAT-GCACCGGCATTGAGAC
* * *
68174267 GAGTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGAC
1 GAGTGCTAGTGTAAAACATGTTTGGGACATGCACCGGCATTGAGAC
68174313 ATAAGTCAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 14 0.33
47 14 0.33
48 15 0.35
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (46 bp):
GAGTGCTAGTGTAAAACATGTTTGGGACATGCACCGGCATTGAGAC
Found at i:68174330 original size:46 final size:46
Alignment explanation
Indices: 68174177--68174350 Score: 144
Period size: 46 Copynumber: 3.7 Consensus size: 46
68174167 GTTATTGTGA
* *
68174177 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCACATT-ATG---AGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG---CATTGA-GACAAGT
* * *
68174223 GCTAGTGTAAAACCATGTTTGGGACATGGCACCGGCATTGAGACGAGT
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCATTGAGACAAGT
*
68174271 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGACATAAGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGAC--AAGT
* * * *
68174319 -C-AGTGTGAGACATGTCTAGGAAATGCATCGGC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGC
68174351 TATAAGATGT
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 5 0.05
46 53 0.49
47 27 0.25
48 23 0.21
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACAAGT
Done.