Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 199 of 311
Found at i:68534129 original size:43 final size:43
Alignment explanation
Indices: 68534055--68534137 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
68534045 GAGATATATG
** *
68534055 GCATCCGAGCTCTTTGAGAGGTTTGAATTCATTATGGATGTGA
1 GCATCCGAGCTCTTTGAGAGGTCCGAATTCATAATGGATGTGA
* * *
68534098 GCATCCGAGCTCTTTTAGTGGTCCGAGTTCATAATGGATG
1 GCATCCGAGCTCTTTGAGAGGTCCGAATTCATAATGGATG
68534138 CAATTCATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.34
Consensus pattern (43 bp):
GCATCCGAGCTCTTTGAGAGGTCCGAATTCATAATGGATGTGA
Found at i:68537967 original size:15 final size:15
Alignment explanation
Indices: 68537904--68537967 Score: 85
Period size: 15 Copynumber: 4.3 Consensus size: 15
68537894 GTATCGTATA
*
68537904 TTGGATTTCTGTATC
1 TTGGATTTCTTTATC
*
68537919 TTGGATTTCTTCATC
1 TTGGATTTCTTTATC
68537934 TTGGATTT-TTCTATC
1 TTGGATTTCTT-TATC
*
68537949 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
68537964 TTGG
1 TTGG
68537968 TCTTCTTGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.05
15 39 0.91
16 2 0.05
ACGTcount: A:0.12, C:0.12, G:0.17, T:0.58
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:68541097 original size:43 final size:44
Alignment explanation
Indices: 68540984--68541099 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 44
68540974 GAAATTCGAA
* *
68540984 CTCGTTGAGTGGTCCGGGTTCGTAA--GATATGCAGCATCCAAG
1 CTCGTTGAGTGGTCCGAGTTCGTAATGGATGTGCAGCATCCAAG
* * * **
68541026 CTCGTTGAGAGGTCCGAGTTGGTTATGGATGTG-AGCATCTGAG
1 CTCGTTGAGTGGTCCGAGTTCGTAATGGATGTGCAGCATCCAAG
* *
68541069 CTCGTTGAGTGGTCAGAGTTCATAATGGATG
1 CTCGTTGAGTGGTCCGAGTTCGTAATGGATG
68541100 CGATTCATGT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 21 0.35
43 34 0.57
44 5 0.08
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (44 bp):
CTCGTTGAGTGGTCCGAGTTCGTAATGGATGTGCAGCATCCAAG
Found at i:68545111 original size:23 final size:23
Alignment explanation
Indices: 68545081--68545127 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
68545071 TTTTAAGTTG
68545081 TCATCAACCGATCTAGCTATTTC
1 TCATCAACCGATCTAGCTATTTC
*
68545104 TCATCAACCGTTCTAGCTATTTC
1 TCATCAACCGATCTAGCTATTTC
68545127 T
1 T
68545128 ACCATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.30, G:0.09, T:0.38
Consensus pattern (23 bp):
TCATCAACCGATCTAGCTATTTC
Found at i:68547328 original size:46 final size:48
Alignment explanation
Indices: 68547124--68547340 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 48
68547114 ACAACAAGCT
* * *** * * *
68547124 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCAAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTGGCTAAAATATCTCGAGGCC
* * * * * * *
68547173 GATGCATGTCCCAGACATGCCTCACACTAGCT---CTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAAAAT-ATCTCGAGGCC
* * * *
68547219 AATGCCTGTCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAAAATATCTCGAGGCC
* *
68547267 GAAGCATGTCCCAGACATGTCTTACACTGGC-AAACATAT-T-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAAA-ATATCTCGAGGCC
68547313 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
68547341 AGCACACAGA
Statistics
Matches: 138, Mismatches: 25, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.47
47 3 0.02
48 64 0.46
49 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTAAAATATCTCGAGGCC
Found at i:68548800 original size:47 final size:48
Alignment explanation
Indices: 68548715--68548839 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 48
68548705 GACGAGTGCT
* * **
68548715 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAT-ATAAACC
* * *
68548761 AGTGTAAGACCATATCTAGGACATGGCTTCGACT-TGAGATATAAACC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGATATAAACC
* *
68548808 AGTGTAAGACCACGTCTAGGACACGGCATCGA
1 AGTGTAAGACCATGTCTAGGACATGGCATCGA
68548840 TACCTTACCC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 11 0.17
47 47 0.72
48 7 0.11
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGATATAAACC
Found at i:68558175 original size:45 final size:45
Alignment explanation
Indices: 68558119--68558209 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
68558109 GAATTATGTA
* *
68558119 ATCTGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
*
68558164 ATCTGAACTCATTGAGTTATGGTCTGAGTTCGTGATATATGTGAC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
68558209 A
1 A
68558210 CATGTTTTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
Found at i:68565799 original size:25 final size:26
Alignment explanation
Indices: 68565771--68565822 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
68565761 ATCATCCCAA
*
68565771 TTAAA-GGTTCTTTGTGAA-CTTCCCG
1 TTAAATGGTTCATTGT-AAGCTTCCCG
68565796 TTAAATTGGTTCATTGTAAGCTTCCCG
1 TTAAA-TGGTTCATTGTAAGCTTCCCG
68565823 ATAGTGCTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.22
26 2 0.09
27 16 0.70
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (26 bp):
TTAAATGGTTCATTGTAAGCTTCCCG
Found at i:68565914 original size:24 final size:23
Alignment explanation
Indices: 68565861--68565986 Score: 92
Period size: 24 Copynumber: 5.3 Consensus size: 23
68565851 GGCTATCAGA
* *
68565861 AGCTTCCCGATATGGTTCTTTGTG
1 AGCTTCCCGATATGGCTC-TTATG
*
68565885 AACTTCCCGATTATGGCTCTTATG
1 AGCTTCCCGA-TATGGCTCTTATG
* * * ** *
68565909 AGCTTCCTGTTATATAGCCCGAATA
1 AGCTTCCCG--ATATGGCTCTTATG
68565934 AGCTTCCCGATA-GGCTCTTTATG
1 AGCTTCCCGATATGGCTC-TTATG
* *
68565957 AGCTTCCCGAAATGGCTCTATGTG
1 AGCTTCCCGATATGGCTCT-TATG
68565981 AGCTTC
1 AGCTTC
68565987 TCGTTATAAG
Statistics
Matches: 78, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
22 3 0.04
23 17 0.22
24 34 0.44
25 23 0.29
26 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (23 bp):
AGCTTCCCGATATGGCTCTTATG
Found at i:68565983 original size:72 final size:73
Alignment explanation
Indices: 68565860--68565994 Score: 186
Period size: 72 Copynumber: 1.9 Consensus size: 73
68565850 TGGCTATCAG
* * *
68565860 AAGCTTCCCGATATGGTTCTTTGTGAACTTCCCGATTATGGCTCTTATGAGCTTC-CTGTTATAT
1 AAGCTTCCCGATATGGCTCTTTATGAACTTCCCGATAATGGCTCTTATGAGCTTCTC-GTTATAT
68565924 AGCCCGAAT
65 AGCCCGAAT
* *
68565933 AAGCTTCCCGATA-GGCTCTTTATGAGCTTCCCGA-AATGGCTCTATGTGAGCTTCTCGTTATA
1 AAGCTTCCCGATATGGCTCTTTATGAACTTCCCGATAATGGCTCT-TATGAGCTTCTCGTTATA
68565995 AGGCTCGAGT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
71 8 0.15
72 33 0.60
73 14 0.25
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (73 bp):
AAGCTTCCCGATATGGCTCTTTATGAACTTCCCGATAATGGCTCTTATGAGCTTCTCGTTATATA
GCCCGAAT
Found at i:68568055 original size:29 final size:29
Alignment explanation
Indices: 68567992--68568059 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
68567982 TAATCAACCA
68567992 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
68568021 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
68568050 CGCACACTTA
1 CGCACACTTA
68568060 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:68568200 original size:29 final size:30
Alignment explanation
Indices: 68568161--68568239 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
68568151 CTTAATAATC
68568161 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
68568191 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
68568220 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68568240 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:68620711 original size:172 final size:171
Alignment explanation
Indices: 68620422--68620745 Score: 453
Period size: 172 Copynumber: 1.9 Consensus size: 171
68620412 AACTCAAGGT
* * *
68620422 ACTTACCTTTTCCGCTGTCCAAAATTGACTCCTAAAGTCGCACCCTTCAGTAAATAATTTATAGA
1 ACTTACATTTTCCGCTGTCCAAAATCGACTCCTAAAGTCGCACCCTTAAGTAAATAATTTATAGA
* *
68620487 AAATATATACTGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATG-CACT
66 AAATATATACTGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGACACT
68620551 TTAAACTC-ACACAC-TAGTGCCATGCATTCAAGTTCGCAC
131 TTAAACTCGACACACTTAGTGCCATGCATTCAAGTTCGCAC
68620590 ACTTACATTTTCCGCTGTCC-AAATCGACTCGCGGTAAAGTCGCACCCTTAATGTAAA-AA-TTA
1 ACTTACATTTTCCGCTGTCCAAAATCGACTC-C--TAAAGTCGCACCCTTAA-GTAAATAATTTA
* * *
68620652 TAGAAAATATATATTGGGTTCGCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCA
62 TAGAAAATATATACT-GGTT-G-CACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCA
* *
68620717 TGACTCTTTAAACTCGCCACACTTAGTGC
124 TGACACTTTAAACTCGACACACTTAGTGC
68620746 GTGATAAATT
Statistics
Matches: 136, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
167 9 0.07
168 20 0.15
169 17 0.12
170 22 0.16
171 6 0.04
172 40 0.29
173 11 0.08
174 5 0.04
175 6 0.04
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (171 bp):
ACTTACATTTTCCGCTGTCCAAAATCGACTCCTAAAGTCGCACCCTTAAGTAAATAATTTATAGA
AAATATATACTGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGACACT
TTAAACTCGACACACTTAGTGCCATGCATTCAAGTTCGCAC
Found at i:68625880 original size:39 final size:40
Alignment explanation
Indices: 68625707--68625897 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
68625697 GGATATAGCT
* * *
68625707 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
68625747 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
68625787 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
68625827 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
68625866 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
68625898 TTATCATCCA
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 33 0.24
40 101 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:68632087 original size:41 final size:41
Alignment explanation
Indices: 68631986--68632088 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
68631976 ATTATACATT
* *
68631986 AGCAATAGCGGCGTTTTTTGGTCCAAACGCCGCTAAAAACTA
1 AGCAATAGCGGCG-TTTTTGGTCCAAACGCCACGAAAAACTA
* * *
68632028 AGCAATAGCGGCATTTTTGGTCCAAATGCCACGAAAAACTG
1 AGCAATAGCGGCGTTTTTGGTCCAAACGCCACGAAAAACTA
*
68632069 AGCAATAGCGGCGCTTTTGG
1 AGCAATAGCGGCGTTTTTGG
68632089 AAAAACGCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 42 0.78
42 12 0.22
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23
Consensus pattern (41 bp):
AGCAATAGCGGCGTTTTTGGTCCAAACGCCACGAAAAACTA
Found at i:68632119 original size:41 final size:41
Alignment explanation
Indices: 68632074--68632378 Score: 344
Period size: 41 Copynumber: 7.7 Consensus size: 41
68632064 AACTGAGCAA
**
68632074 TAGCGGCGCTTTTGGAAAAACGCTACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * *
68632115 TAGCGGCGCTTTTGGAAAAACACCGCTATTGCTC-A-G---
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * *
68632151 T----GCGCTTTTGGAAAAACGCCGCTATTGCTC-AGATTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * *
68632187 TAGTGGTGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
*
68632228 TAGCGGCGCTTTTGGAAAAAAGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
*
68632269 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * * * * *
68632310 TAGCTGCGCTTTTGGAAAAACACCACTATTGCTC-AGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* *
68632350 TAGCGGCACTTCTGGAAAAACGCCGCTAT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTAT
68632379 TACTCAGTTT
Statistics
Matches: 227, Mismatches: 28, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
32 29 0.13
36 2 0.01
39 1 0.00
40 55 0.24
41 140 0.62
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:68632161 original size:32 final size:32
Alignment explanation
Indices: 68632120--68632182 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
68632110 GGTTTTAGCG
68632120 GCGCTTTTGGAAAAACACCGCTATTGCTCAGT
1 GCGCTTTTGGAAAAACACCGCTATTGCTCAGT
*
68632152 GCGCTTTTGGAAAAACGCCGCTATTGCTCAG
1 GCGCTTTTGGAAAAACACCGCTATTGCTCAG
68632183 ATTTTAGTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (32 bp):
GCGCTTTTGGAAAAACACCGCTATTGCTCAGT
Found at i:68632206 original size:72 final size:73
Alignment explanation
Indices: 68632079--68632289 Score: 199
Period size: 72 Copynumber: 2.8 Consensus size: 73
68632069 AGCAATAGCG
* * *
68632079 GCGCTTTTGGAAAAACGCTACTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACACCGCTAT
1 GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACCGCTAT
68632144 TGCTCAGT
66 TGCTCAGT
* * * * * *
68632152 GCGCTTTTGGAAAAACGCCGCTATTGCTC-AGATTTTAGTGGTGCTTTTGAAAAAACGCCGCTAT
1 GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACCGCTAT
* *
68632216 AGATCGAGGTTTT
66 TGCTC-A-G---T
* * * *
68632229 AGCGGCGCTTTTGGAAAAAAGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAAC
1 ----GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAAC
68632290 GCCACTATAG
Statistics
Matches: 110, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
72 33 0.30
73 26 0.24
74 1 0.01
77 1 0.01
81 26 0.24
82 23 0.21
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (73 bp):
GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACCGCTAT
TGCTCAGT
Found at i:68633017 original size:14 final size:15
Alignment explanation
Indices: 68632978--68633018 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
68632968 ATCATAAACT
68632978 CTTAAAACTCCAACCA
1 CTTAAAAC-CCAACCA
*
68632994 C-TAAACCCCAACC-
1 CTTAAAACCCAACCA
68633007 CTTAAAACCCAA
1 CTTAAAACCCAA
68633019 GACTGAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 1 0.05
14 15 0.68
15 5 0.23
16 1 0.05
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (15 bp):
CTTAAAACCCAACCA
Found at i:68633208 original size:21 final size:21
Alignment explanation
Indices: 68633166--68633208 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
68633156 ATATATGTTC
*
68633166 ATGGTCTAGGATTTAGGGTTT
1 ATGGTCTAGGATTTAGGATTT
*
68633187 ATGGTTTAGGATTT-GAGATTT
1 ATGGTCTAGGATTTAG-GATTT
68633208 A
1 A
68633209 ATTTTTAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.44
Consensus pattern (21 bp):
ATGGTCTAGGATTTAGGATTT
Found at i:68633636 original size:8 final size:8
Alignment explanation
Indices: 68633591--68633693 Score: 88
Period size: 8 Copynumber: 12.9 Consensus size: 8
68633581 TTTATATGTT
68633591 AATTTAAA
1 AATTTAAA
*
68633599 AATGATAAA
1 AAT-TTAAA
68633608 AATCTTCAAAA
1 AAT-TT--AAA
* *
68633619 AAATTGAA
1 AATTTAAA
68633627 AATTTAAA
1 AATTTAAA
68633635 AA-TTAAA
1 AATTTAAA
68633642 AA-TTAAA
1 AATTTAAA
68633649 AA-TTAAA
1 AATTTAAA
*
68633656 AACTTAAA
1 AATTTAAA
*
68633664 AACTTAAA
1 AATTTAAA
68633672 AATTT-AA
1 AATTTAAA
*
68633679 AATTTTAA
1 AATTTAAA
68633687 AATTTAA
1 AATTTAA
68633694 TATTTTAGTC
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
7 28 0.35
8 38 0.47
9 8 0.10
10 2 0.02
11 5 0.06
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (8 bp):
AATTTAAA
Found at i:68633637 original size:15 final size:15
Alignment explanation
Indices: 68633617--68633693 Score: 102
Period size: 15 Copynumber: 5.1 Consensus size: 15
68633607 AAATCTTCAA
*
68633617 AAAAATTGAAAATTT
1 AAAAATTAAAAATTT
68633632 AAAAATTAAAAA-TT
1 AAAAATTAAAAATTT
*
68633646 AAAAATTAAAAACTT
1 AAAAATTAAAAATTT
68633661 AAAAACTTAAAAATTT
1 AAAAA-TTAAAAATTT
* *
68633677 AAAATTTTAAAATTT
1 AAAAATTAAAAATTT
68633692 AA
1 AA
68633694 TATTTTAGTC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
14 14 0.25
15 29 0.52
16 13 0.23
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (15 bp):
AAAAATTAAAAATTT
Found at i:68633693 original size:7 final size:7
Alignment explanation
Indices: 68633617--68633682 Score: 87
Period size: 7 Copynumber: 9.0 Consensus size: 7
68633607 AAATCTTCAA
68633617 AAAAATT
1 AAAAATT
*
68633624 GAAAATTT
1 -AAAAATT
68633632 AAAAATT
1 AAAAATT
68633639 AAAAATT
1 AAAAATT
68633646 AAAAATT
1 AAAAATT
68633653 AAAAACTT
1 AAAAA-TT
68633661 AAAAACTT
1 AAAAA-TT
68633669 AAAAATT
1 AAAAATT
*
68633676 TAAAATT
1 AAAAATT
68633683 TTAAAATTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
7 33 0.61
8 21 0.39
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (7 bp):
AAAAATT
Found at i:68633698 original size:7 final size:7
Alignment explanation
Indices: 68633618--68633698 Score: 63
Period size: 7 Copynumber: 11.0 Consensus size: 7
68633608 AATCTTCAAA
*
68633618 AAAATTG
1 AAAATTT
68633625 AAAATTT
1 AAAATTT
*
68633632 AAAAATTA
1 -AAAATTT
*
68633640 AAAATTA
1 AAAATTT
*
68633647 AAAATTA
1 AAAATTT
*
68633654 AAAACTTA
1 AAAA-TTT
*
68633662 AAAACTTA
1 AAAA-TTT
68633670 AAAATTT
1 AAAATTT
68633677 AAAATTTT
1 AAAA-TTT
68633685 AAAATTT
1 AAAATTT
*
68633692 AATATTT
1 AAAATTT
68633699 TAGTCCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
7 39 0.58
8 28 0.42
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:68639808 original size:42 final size:43
Alignment explanation
Indices: 68639722--68639821 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
68639712 GGTCATGGTC
* **
68639722 TTTAGCGACGTTTGCTGGAAGAACGCCACTAAAGACCATGACT
1 TTTAGCGGCGTTTTTTGGAAGAACGCCACTAAAGACCATGACT
* *
68639765 TTTAGCGGCGTTTTTTGGAA-AGCGCCGCTAAAGACCATGACT
1 TTTAGCGGCGTTTTTTGGAAGAACGCCACTAAAGACCATGACT
*
68639807 TTTAGCGGCGCTTTT
1 TTTAGCGGCGTTTTT
68639822 AACGCAAACG
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 34 0.67
43 17 0.33
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTTGGAAGAACGCCACTAAAGACCATGACT
Found at i:68640934 original size:47 final size:46
Alignment explanation
Indices: 68640751--68640966 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 46
68640741 AAATTATGAG
* * **
68640751 AGCCAGTGTAAGACCATGTCCGGGACATGGCATCGACATTGAGACGAGG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TCGAGACGATA
* * *
68640800 A-CTAGTGTAAGACATGT-TCGGGACATGCATCGGGCTCGAGGCG-TA
1 AGCCAGTGTAAGACATGTCT-GGGACATGCATC-GACTCGAGACGATA
* *
68640845 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAT-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACT-CGAGACGATA
* * * *
68640891 AGTCAGTGTAAGACCATGTTTGGGACATGACATCGACTTGAGA-TATGA
1 AGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGACTCGAGACGAT-A
68640939 A-CCAGTGTAAGAACATGTCTGGGACATG
1 AGCCAGTGTAAG-ACATGTCTGGGACATG
68640967 ACATTGGCAC
Statistics
Matches: 139, Mismatches: 17, Indels: 24
0.77 0.09 0.13
Matches are distributed among these distances:
45 5 0.04
46 57 0.41
47 57 0.41
48 19 0.14
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGACTCGAGACGATA
Found at i:68640963 original size:140 final size:140
Alignment explanation
Indices: 68640709--68640966 Score: 335
Period size: 140 Copynumber: 1.8 Consensus size: 140
68640699 TGTGTGAGTT
* * *
68640709 AGTGTAAGACATGTGTGGGACATGCATTGGCCAAATTATGAGAGCCAGTGTAAGACCATGTCCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAAATGATGAGAGCCAGTGTAAGACCATGTCCGG
* * *
68640774 GACATGGCATCGACATTGAGACGAGGACTAGTGTAAGACATGTTCGGGACATGCATCGGGCTCGA
66 GACATGACATCGACATTGAGACGAGAACCAGTGTAAGACATGTTCGGGACATGCATCGGGCTCGA
68640839 GGCGTAAGCC
131 GGCGTAAGCC
* * * * **
68640849 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-AATGATGAGAGCCAGTGTAAGACCATGTCCG
*
68640913 GGACATGACATCGAC-TTGAGA-TATGAACCAGTGTAAGAACATG-TCTGGGACATG
65 GGACATGACATCGACATTGAGACGA-GAACCAGTGTAAG-ACATGTTC-GGGACATG
68640967 ACATTGGCAC
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
138 1 0.01
139 19 0.19
140 80 0.79
141 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCAAATGATGAGAGCCAGTGTAAGACCATGTCCGG
GACATGACATCGACATTGAGACGAGAACCAGTGTAAGACATGTTCGGGACATGCATCGGGCTCGA
GGCGTAAGCC
Found at i:68640970 original size:47 final size:45
Alignment explanation
Indices: 68640753--68640966 Score: 164
Period size: 47 Copynumber: 4.6 Consensus size: 45
68640743 ATTATGAGAG
* * * * **
68640753 CCAGTGTAAGACCATGTCCGGGACATGGCATCGACATTGAGACGAGGA
1 CCAGTGTAAGAACATGTCTGGGACAT-GCATCGAC-TCGAGA-TATAA
* * ***
68640801 CTAGTGTAAG-ACATGT-TCGGGACATGCATCGGGCTCGAGGCGTAA
1 CCAGTGTAAGAACATGTCT-GGGACATGCATC-GACTCGAGATATAA
* *
68640846 GCCAGTGTAAG-ACATGTCTGGGACATGCATCGGCTACGAGATGATAG
1 -CCAGTGTAAGAACATGTCTGGGACATGCATCGACT-CGAGAT-ATAA
* * * *
68640893 TCAGTGTAAGACCATGTTTGGGACATGACATCGACTTGAGATATGAA
1 CCAGTGTAAGAACATGTCTGGGACATG-CATCGACTCGAGATAT-AA
68640940 CCAGTGTAAGAACATGTCTGGGACATG
1 CCAGTGTAAGAACATGTCTGGGACATG
68640967 ACATTGGCAC
Statistics
Matches: 133, Mismatches: 24, Indels: 19
0.76 0.14 0.11
Matches are distributed among these distances:
45 5 0.04
46 51 0.38
47 61 0.46
48 16 0.12
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (45 bp):
CCAGTGTAAGAACATGTCTGGGACATGCATCGACTCGAGATATAA
Found at i:68645675 original size:51 final size:49
Alignment explanation
Indices: 68645551--68645690 Score: 174
Period size: 51 Copynumber: 2.8 Consensus size: 49
68645541 GAAGCTATCT
* * *
68645551 GGTA-GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
* * * **
68645599 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATAATCG
*
68645650 GGTACGCATAGTAGCCTTCACTTAGTACTACACACGTGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
68645691 TCACAATAGT
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.05
49 31 0.40
50 2 0.03
51 41 0.53
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
Found at i:68648006 original size:40 final size:40
Alignment explanation
Indices: 68647962--68648145 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
68647952 GCTACTCGTT
* *
68647962 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
68648002 CAAATGTCTTCGGAACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
68648042 CCAATGCCTTCAGG-CTTAGCCCGG-AATTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
68648081 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
68648122 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
68648146 ACATCATTCG
Statistics
Matches: 116, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 71 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68648074 original size:39 final size:39
Alignment explanation
Indices: 68647990--68648099 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
68647980 AGCCCGGTTA
* *
68647990 TAGTAACTCGCACAAATGTCTTCGGAACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGG-ACTTAACCCGGAAT
* *
68648030 TAGTAACTCGCACCAATGCCTTCAGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGAAT
*
68648069 TAGTAACTCGGACAAATGCCTTCGGATCTTA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTA
68648100 GTCCGGATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.03
39 32 0.52
40 25 0.41
41 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAAT
Found at i:68648130 original size:79 final size:80
Alignment explanation
Indices: 68647990--68648146 Score: 192
Period size: 79 Copynumber: 2.0 Consensus size: 80
68647980 AGCCCGGTTA
* * * *
68647990 TAGTAACTCGCACAAATGTCTTCGGAACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCAG
1 TAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCAG
68648055 G-CTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
* * ** * * *
68648069 TAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTCA
68648133 GGACTTAGCCCGGA
65 GGACTTAGCCCGGA
68648147 CATCATTCGA
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 50 0.77
80 15 0.23
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCAG
GACTTAGCCCGGAAT
Found at i:68649430 original size:21 final size:23
Alignment explanation
Indices: 68649383--68649433 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
68649373 AGGATGGACA
*
68649383 CATTT-TTTCTTTTGTTTTCATC
1 CATTTCTTTCTCTTGTTTTCATC
68649405 C-TTTCTTTCTCTT-TTTTC-TC
1 CATTTCTTTCTCTTGTTTTCATC
68649425 CATTTCTTT
1 CATTTCTTT
68649434 ATTACTAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 8 0.31
ACGTcount: A:0.06, C:0.24, G:0.02, T:0.69
Consensus pattern (23 bp):
CATTTCTTTCTCTTGTTTTCATC
Found at i:68656000 original size:40 final size:40
Alignment explanation
Indices: 68655956--68656139 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
68655946 GCTACTCGTT
* **
68655956 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
68655996 CAAATGTCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
68656036 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
68656075 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
68656116 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
68656140 ACATCATTCG
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.61
41 14 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68656067 original size:79 final size:81
Alignment explanation
Indices: 68655958--68656140 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
68655948 TACTCGTTCA
* * ** *
68655958 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCTTACAAATGTCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
68656021 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
68656038 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
68656101 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
68656117 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68656141 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:68657423 original size:22 final size:23
Alignment explanation
Indices: 68657384--68657436 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
68657374 GATGGACACA
*
68657384 TTTTTTTTCT-TTTGTTTTCATCC
1 TTTTCTTTCTCTTTGTTTTC-TCC
68657407 TTTTCTTTCTCTTT-TTTTCTCC
1 TTTTCTTTCTCTTTGTTTTCTCC
*
68657429 ATTTCTTT
1 TTTTCTTT
68657437 ATTACTAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 10 0.37
23 14 0.52
24 3 0.11
ACGTcount: A:0.04, C:0.21, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTCTTTCTCTTTGTTTTCTCC
Found at i:68662469 original size:47 final size:48
Alignment explanation
Indices: 68662380--68662505 Score: 145
Period size: 47 Copynumber: 2.7 Consensus size: 48
68662370 TCGAGGCATA
* *
68662380 AGCCAGTGTACGA-CATCTCTGGGACAT-GCATCAGCTACGAGATGAT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAT-ATG
* *
68662426 AGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACT-TGAGATATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CTACGAGATATG
* *
68662473 AGCCAGTGTAAAACCATGTCTAGGACATGGCAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCAT
68662506 TGGTACCTTA
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
46 13 0.19
47 49 0.71
48 7 0.10
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGATATG
Found at i:68669353 original size:46 final size:46
Alignment explanation
Indices: 68669286--68669460 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
68669276 TGTAACCCGC
*
68669286 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
68669332 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * *
68669382 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCCGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
68669425 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
68669461 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:68669406 original size:93 final size:93
Alignment explanation
Indices: 68669293--68669464 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68669283 CGCCCATAAG
* *
68669293 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68669358 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68669386 CGAACTCGGACTCAACTCAACGAGTTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68669451 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68669465 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68674835 original size:48 final size:48
Alignment explanation
Indices: 68674708--68675023 Score: 350
Period size: 48 Copynumber: 6.6 Consensus size: 48
68674698 TCCACATGTT
** * * * *
68674708 GATGCCAAATCCCAGAGATGGTCTTACACTAGCACACATAT-AAGCGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA-CACC
* * * *
68674756 GATGCCATGT-ACTGACATGGTCTTACACTGGCTCACACATCCACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* *
68674803 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATTTCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* *
68674851 GATGCCCTGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* * *
68674899 GATGCCATATCCCAGATATGGTCTTACACTGGCTCACATATCAACACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* ** * * * * **
68674947 GATGCCATATCCCAGATTTGGTCTTATA-TGGGGTCTCATATCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GGCTCACATATCAACACC
*
68674995 GATGCCATGTCCTAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
68675024 GGGACTTTAT
Statistics
Matches: 226, Mismatches: 38, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
47 38 0.17
48 188 0.83
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
Found at i:68678219 original size:27 final size:27
Alignment explanation
Indices: 68678174--68678450 Score: 200
Period size: 27 Copynumber: 10.3 Consensus size: 27
68678164 CAAATTATTG
* *
68678174 AAATACCCCCAG-TTGTAAAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
* * *
68678200 AAGTACCCCCGGTTTATAAAACTACCC
1 AAATACCCCCGGTTTATAAAATTACCA
* * * * *
68678227 AAATATCCTCGATTTATAGAATTACCG
1 AAATACCCCCGGTTTATAAAATTACCA
*** * * *
68678254 TTTTACCCTCGATTTATAAAATTACTA
1 AAATACCCCCGGTTTATAAAATTACCA
** *
68678281 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
* * *
68678308 AAATACCCTC-GATCAGTAAAATTACCA
1 AAATACCCCCGGTTTA-TAAAATTACCA
* * *
68678335 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCCCGGTTTATAAAATTACCA
* * * *
68678362 AAGTACCCCTGGTTTGTAAAATTACTA
1 AAATACCCCCGGTTTATAAAATTACCA
* *
68678389 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
*** * *
68678416 AAATACCCCTAATTTGTAAAA-TACTA
1 AAATACCCCCGGTTTATAAAATTACCA
68678442 AAATACCCC
1 AAATACCCC
68678451 TGTAAGGTAG
Statistics
Matches: 206, Mismatches: 42, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
26 26 0.13
27 178 0.86
28 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCCCGGTTTATAAAATTACCA
Found at i:68678304 original size:54 final size:54
Alignment explanation
Indices: 68678186--68678452 Score: 238
Period size: 54 Copynumber: 5.0 Consensus size: 54
68678176 ATACCCCCAG
* * * * ** * *
68678186 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAACTACCCAAATA-TCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCCT-GGT
* * **** *
68678240 TTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCCTGGT
** * *
68678294 TTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTCGATTTA-TAAAATTACTAAAATACCCCTGGT
* * * *
68678348 TTGTAAAATTACTAAAGTACCC-CTGGTTTGTAAAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTC-GATTTATAAAATTACTAAAATACCCCTGGT
* *
68678402 TTGTAAAATTACCAAAATACCC-CTAATTTGTAAAA-TACTAAAATACCCCTG
1 TTGTAAAATTACCAAAATACCCTC-GATTTATAAAATTACTAAAATACCCCTG
68678453 TAAGGTAGAA
Statistics
Matches: 174, Mismatches: 35, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
53 19 0.11
54 152 0.87
55 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCCTGGT
Found at i:68678331 original size:81 final size:81
Alignment explanation
Indices: 68678189--68678452 Score: 257
Period size: 81 Copynumber: 3.3 Consensus size: 81
68678179 CCCCCAGTTG
* * * * * * * *
68678189 TAAAATTACCAAAGTACCCCCGGTTTATAAAACTACCCAAATATCCTCGATTTATAGAATTACCG
1 TAAAATTACTAAAGTACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTCATAAAATTACCA
***
68678254 TTTTA-CCCTCGATTTA
66 AAATACCCCT-GATTTA
* * *
68678270 TAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACC
1 TAAAATTACTAAAGTACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTCA-TAAAATTACC
* *
68678334 AAAATACCCCTGGTTTG
65 AAAATACCCCTGATTTA
* * * **
68678351 TAAAATTACTAAAGTACCCCTGGTTTGTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACC
1 TAAAATTACTAAAGTACCCCTGGTTTATAAAATTACCAAAATACCCTC-GATTCATAAAATTACC
* *
68678415 AAAATACCCCTAATTTG
65 AAAATACCCCTGATTTA
*
68678432 TAAAA-TACTAAAATACCCCTG
1 TAAAATTACTAAAGTACCCCTG
68678453 TAAGGTAGAA
Statistics
Matches: 152, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
80 18 0.12
81 129 0.85
82 5 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
TAAAATTACTAAAGTACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTCATAAAATTACCA
AAATACCCCTGATTTA
Found at i:68678500 original size:80 final size:81
Alignment explanation
Indices: 68678265--68678503 Score: 218
Period size: 81 Copynumber: 3.0 Consensus size: 81
68678255 TTTACCCTCG
* * **** * * **
68678265 ATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAA
1 ATTTGTAAAATTACTAAAATACCCCTGGTAGGTAAAATTACTAAAATACCCCT-GGTGGGTAAAA
*
68678329 TTACCAAAATACCCCTG
65 TTACCAAAATACCCCTA
* * ** **
68678346 GTTTGTAAAATTACTAAAGTACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAAT
1 ATTTGTAAAATTACTAAAATACCCCTGGTAGGTAAAATTACTAAAATACCCCTGGTGGGTAAAAT
68678411 TACCAAAATACCCCTA
66 TACCAAAATACCCCTA
* * *
68678427 ATTTGTAAAA-TACTAAAATACCCCT-GTAAGGTAGAATTACTGAAATA-CCCTTGTAGGGTAGA
1 ATTTGTAAAATTACTAAAATACCCCTGGT-AGGTAAAATTACTAAAATACCCCTGGT-GGGTA-A
*
68678489 AA-TACCGAAATACCC
63 AATTACCAAAATACCC
68678504 TTGTAGGGTA
Statistics
Matches: 133, Mismatches: 21, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
79 8 0.06
80 44 0.33
81 77 0.58
82 4 0.03
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (81 bp):
ATTTGTAAAATTACTAAAATACCCCTGGTAGGTAAAATTACTAAAATACCCCTGGTGGGTAAAAT
TACCAAAATACCCCTA
Found at i:68678521 original size:27 final size:27
Alignment explanation
Indices: 68678442--68678521 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
68678432 TAAAATACTA
* * *
68678442 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
68678469 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
68678496 AAATACCCTTGTAGGGTAGAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
68678522 AAGATAACCA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:68678539 original size:27 final size:26
Alignment explanation
Indices: 68678442--68678546 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
68678432 TAAAATACTA
* * *
68678442 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTAC-C
*
68678469 AAATACCCTTGTAGGGTAGAAATACC
1 AAATACCCTTGTAGGGTAGAATTACC
68678495 GAAATACCCTTGTAGGGTAGAATTACC
1 -AAATACCCTTGTAGGGTAGAATTACC
* * * *
68678522 AAGATAACCATGTGGGGTAAAATTA
1 AA-ATACCCTTGTAGGGTAGAATTA
68678547 TCATTTTGCC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.03
27 65 0.97
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (26 bp):
AAATACCCTTGTAGGGTAGAATTACC
Found at i:68678540 original size:54 final size:53
Alignment explanation
Indices: 68678431--68678544 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 53
68678421 CCCCTAATTT
** * * *
68678431 GTAAAATACTAAAATACCCCTGTAAGGTAGAATTACTGAAATACCCTTGTAGG
1 GTAAAATACCGAAATACCCCTGTAAGGTAGAATTACTCAAATAACCATGTAGG
* * *
68678484 GTAGAAATACCGAAATACCCTTGTAGGGTAGAATTAC-CAAGATAACCATGTGGG
1 GTA-AAATACCGAAATACCCCTGTAAGGTAGAATTACTCAA-ATAACCATGTAGG
68678538 GTAAAAT
1 GTAAAAT
68678545 TATCATTTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 9 0.18
54 42 0.82
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (53 bp):
GTAAAATACCGAAATACCCCTGTAAGGTAGAATTACTCAAATAACCATGTAGG
Found at i:68678827 original size:24 final size:25
Alignment explanation
Indices: 68678751--68678820 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
68678741 AGGAAGTGCT
** *
68678751 AAAAGGGCTACGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
68678776 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
68678801 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
68678821 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:68678833 original size:24 final size:24
Alignment explanation
Indices: 68678762--68678847 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 24
68678752 AAAGGGCTAC
*
68678762 GCCCCAGTTTACCAAAA-AGGGCTTT
1 GCCCCAG-TTATCAAAAGA-GGCTTT
68678787 GCCCCAGTTTATCAAAA-AGGGCTTT
1 GCCCCAG-TTATCAAAAGA-GGCTTT
* **
68678812 GCCCCAGTTATTAAAAGAGGCTAG
1 GCCCCAGTTATCAAAAGAGGCTTT
68678836 GCCTCCAGTTAT
1 GCC-CCAGTTAT
68678848 ATGCTAAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
24 15 0.27
25 40 0.73
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (24 bp):
GCCCCAGTTATCAAAAGAGGCTTT
Found at i:68680755 original size:40 final size:40
Alignment explanation
Indices: 68680711--68680916 Score: 344
Period size: 40 Copynumber: 5.2 Consensus size: 40
68680701 AGGATTTAGT
* *
68680711 CGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
*
68680751 CGGATATAGTCAATAGCAC-AATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
*
68680790 CGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
68680830 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
68680870 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
*
68680910 CAGATAT
1 CGGATAT
68680917 CATTCGAATA
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
39 37 0.24
40 119 0.76
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:68688861 original size:40 final size:40
Alignment explanation
Indices: 68688799--68688979 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
68688789 AACCCAAGTA
* * *
68688799 CCTTCGGGATTTAG-TCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68688838 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68688877 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
68688917 CCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68688957 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68688980 CATTCGAATA
Statistics
Matches: 130, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
39 49 0.38
40 80 0.62
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68688930 original size:79 final size:80
Alignment explanation
Indices: 68688799--68688979 Score: 278
Period size: 79 Copynumber: 2.3 Consensus size: 80
68688789 AACCCAAGTA
* * * **
68688799 CCTTCGGGATTTAG-TCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGAACTTAGCCCGGATATAG
68688863 TCAATAGCAC-AATG
66 TCAATAGCACAAATG
68688877 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGAACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGAACTTAGCCCGGATATA
*
68688941 GTCACTAGCACAAATG
65 GTCAATAGCACAAATG
68688957 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68688980 CATTCGAATA
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
78 13 0.14
79 53 0.56
80 28 0.30
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGAACTTAGCCCGGATATAG
TCAATAGCACAAATG
Found at i:68705300 original size:18 final size:18
Alignment explanation
Indices: 68705277--68705314 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
68705267 TCTCAAGGTA
68705277 CACTA-TTGCACATAATTC
1 CACTATTTGCACAT-ATTC
*
68705295 CACTATTTGCTCATATTC
1 CACTATTTGCACATATTC
68705313 CA
1 CA
68705315 ATCAAGTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37
Consensus pattern (18 bp):
CACTATTTGCACATATTC
Found at i:68706510 original size:48 final size:48
Alignment explanation
Indices: 68706453--68706867 Score: 429
Period size: 48 Copynumber: 8.7 Consensus size: 48
68706443 TCATGTCAGT
** * * *
68706453 GCCGATGCCATGTCTGAGACATGGTCTTACACTAGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * *
68706501 GCCGATGCCATGTCCTAGACATGATTTTACACTGGCTCACATATCCAA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-CAAC
* * *
68706549 GCCGATGCCATGTCCTAGATATGGTCTTACACTGGCTCACATTTCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * *
68706597 GCCGATGCCATGTCCGAAACATGGTCTTACATTGGCTCACATTTCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * *
68706645 GTCGATGCCATATCCCAAACATGGTCTAACACTGGCTCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
** * * * * *
68706693 GTTGATGCCATATGCTAGACATGGTCTTACCCTAG-TCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * * *
68706740 GCCGATGCCATATCCCAGATATGGTCTTACACTAGCTCACATATCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* ** * * * * * * *
68706788 GCTGATGCCATAACCCAGAGATGGTCTTATACGGGGTCTCATATCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
*
68706836 GCTGATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
68706868 AGGACCTTAT
Statistics
Matches: 317, Mismatches: 47, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
47 44 0.14
48 270 0.85
49 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
Found at i:68712725 original size:8 final size:9
Alignment explanation
Indices: 68712695--68712732 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
68712685 TTATATTTTA
68712695 TTATTTGAT
1 TTATTTGAT
*
68712704 TTCTTGTGAT
1 TTATT-TGAT
68712714 TTATTT-AT
1 TTATTTGAT
68712722 TTATTTGAT
1 TTATTTGAT
68712731 TT
1 TT
68712733 CTTTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 8 0.32
9 9 0.36
10 8 0.32
ACGTcount: A:0.18, C:0.03, G:0.11, T:0.68
Consensus pattern (9 bp):
TTATTTGAT
Found at i:68712747 original size:22 final size:24
Alignment explanation
Indices: 68712690--68712751 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 24
68712680 ATGTTTTATA
68712690 TTTTATTATTTGATTTCTTGTGATT
1 TTTTATTATTTGATTTCTTGT-ATT
* *
68712715 TATTTATTTATTTGATTTCTTTTTTT
1 T-TTTA-TTATTTGATTTCTTGTATT
68712741 TTCTTATTATT
1 TT-TTATTATT
68712752 ATTAGTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 7 0.22
26 10 0.31
27 15 0.47
ACGTcount: A:0.16, C:0.05, G:0.06, T:0.73
Consensus pattern (24 bp):
TTTTATTATTTGATTTCTTGTATT
Found at i:68720529 original size:50 final size:50
Alignment explanation
Indices: 68720424--68720705 Score: 313
Period size: 50 Copynumber: 5.6 Consensus size: 50
68720414 CTAGTATGCA
** * * * *
68720424 TAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
68720473 TAGTAGCC-AGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTA-CACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * * ** * *
68720523 TAGTAGCCTGCGCTTAGTACTACACACGTGA-TTGAAGTAGTC-GAGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCT-AACCA-TCTGA-TACACG
* * * *
68720574 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACTATCTGGTACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
68720624 TAGTAGCCTACACTTAGTAC-AGCACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTA-CACACGTGACCTAACCATCTGATACACG
* *
68720674 TAGTAGCCTACACCTAGTACTACACATGTGAC
1 TAGTAGCCTACACTTAGTACTACACACGTGAC
68720706 TGAAGTTGTC
Statistics
Matches: 197, Mismatches: 26, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
49 30 0.15
50 126 0.64
51 40 0.20
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:68720599 original size:101 final size:100
Alignment explanation
Indices: 68720422--68720806 Score: 309
Period size: 101 Copynumber: 3.8 Consensus size: 100
68720412 ATCTAGTATG
** * * * * *
68720422 CATAGTAGCCTGTACTTAGTACTA-CACATGCGACC-AACAATCTGGTACACGTAGTAGCC-AGC
1 CATAGTAGCCTACACTTAGTAC-AGCACACGTGACCTAACCATCTGATACACATAGTAGCCTA-C
*
68720484 ACTTAGTACTACACACGTGACCTAACCATCTGATACA
64 ACTTAGTACTACACATGTGACCTAACCATCTGATACA
* * * * ** *
68720521 CGTAGTAGCCTGCGCTTAGTACTA-CACACGTGA-TTGAAGTAGTC-GAGTACGCATAGTAGCCT
1 CATAGTAGCCTACACTTAGTAC-AGCACACGTGACCT-AACCA-TCTGA-TACACATAGTAGCCT
* *
68720583 ACACTTAGTACTACACATGTGACCTAACTATCTGGTACA
62 ACACTTAGTACTACACATGTGACCTAACCATCTGATACA
*
68720622 CATAGTAGCCTACACTTAGTACAGCACACGTGACCTAACCATCTGATACACGTAGTAGCCTACAC
1 CATAGTAGCCTACACTTAGTACAGCACACGTGACCTAACCATCTGATACACATAGTAGCCTACAC
* *** * * *
68720687 CTAGTACTACACATGTGA-CTGAAGTTGTCGGGTACG
66 TTAGTACTACACATGTGACCT-AA-CCATCTGATACA
* * * * * * * *
68720723 CATAGTAGCCTGCACTTAATACTA-CACATGTGACCTAAAACCATCTTAAACACATTGCAGCCTG
1 CATAGTAGCCTACACTTAGTAC-AGCACACGTGACCT--AACCATCTGATACACATAGTAGCCTA
*
68720787 CACATAGTACTACACATGTG
63 CACTTAGTACTACACATGTG
68720807 TTCTCACAAT
Statistics
Matches: 236, Mismatches: 37, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
99 30 0.13
100 43 0.18
101 121 0.51
102 3 0.01
103 39 0.17
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTACACTTAGTACAGCACACGTGACCTAACCATCTGATACACATAGTAGCCTACAC
TTAGTACTACACATGTGACCTAACCATCTGATACA
Found at i:68720656 original size:151 final size:151
Alignment explanation
Indices: 68720403--68720760 Score: 526
Period size: 151 Copynumber: 2.4 Consensus size: 151
68720393 CACCCTTATA
* * * *
68720403 ACTGAAGCTA-TCTAGTATGCATAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCTG
1 ACTGAAG-TAGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTG
*
68720466 GTACACGTAGTAGCCAGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCC
65 GTACACATAGTAGCCAGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCC
* * *
68720531 TGCGCTTAGTACTACACACGTG
130 TACACCTAGTACTACACACGTG
* * *
68720553 ATTGAAGTAGTCGAGTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCTAACTATCTGG
1 ACTGAAGTAGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGG
68720618 TACACATAGTAGCCTA-CACTTAGTAC-AGCACACGTGACCTAACCATCTGATACACGTAGTAGC
66 TACACATAGTAGCC-AGCACTTAGTACTA-CACACGTGACCTAACCATCTGATACACGTAGTAGC
*
68720681 CTACACCTAGTACTACACATGTG
129 CTACACCTAGTACTACACACGTG
* * *
68720704 ACTGAAGTTGTCGGGTACGCATAGTAGCCTGCACTTAATACTACACATGTGACCTAA
1 ACTGAAGTAGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
68720761 AACCATCTTA
Statistics
Matches: 187, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
149 2 0.01
150 46 0.25
151 138 0.74
152 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
ACTGAAGTAGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGG
TACACATAGTAGCCAGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCT
ACACCTAGTACTACACACGTG
Found at i:68725376 original size:27 final size:27
Alignment explanation
Indices: 68725353--68725693 Score: 353
Period size: 27 Copynumber: 12.6 Consensus size: 27
68725343 TTAGTTTACC
*
68725353 AAATTACCAAGATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
68725380 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68725407 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
68725434 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68725461 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
68725488 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68725515 AAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
68725542 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
68725569 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * *
68725596 AAATTACCAAAATAAACTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
68725623 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** **
68725650 AAATTATGAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
68725677 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
68725694 TTGATTTACA
Statistics
Matches: 263, Mismatches: 49, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 259 0.98
28 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:68725790 original size:54 final size:55
Alignment explanation
Indices: 68725732--68725898 Score: 191
Period size: 54 Copynumber: 3.1 Consensus size: 55
68725722 CGATTTACAA
68725732 AATTACTGAAATCCCCT-TATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATCCCCTCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * * *
68725786 AATTACCGAAAT-ACCTCTATAGGGTAGAATTATCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATCCCCTCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * * * *
68725840 AATTACTAAAATACCCCTGTA-A-GGTGGAATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAAT-CCCCTCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
68725893 AATTAC
1 AATTAC
68725899 CATTTTGCCC
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
53 19 0.20
54 69 0.73
55 1 0.01
56 5 0.05
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (55 bp):
AATTACTGAAATCCCCTCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:68725858 original size:27 final size:27
Alignment explanation
Indices: 68725732--68725898 Score: 160
Period size: 27 Copynumber: 6.2 Consensus size: 27
68725722 CGATTTACAA
*
68725732 AATTACTGAAAT-CCCCTTATAGGGTAG
1 AATTACTGAAATACCCC-TGTAGGGTAG
* *
68725759 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
68725786 AATTACCGAAATACCTCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
68725813 AATTA-TCAAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
68725840 AATTACTAAAATACCCCTGTAAGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
68725867 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
68725893 AATTAC
1 AATTAC
68725899 CATTTTGCCC
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
26 14 0.12
27 99 0.85
28 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:68726378 original size:22 final size:22
Alignment explanation
Indices: 68726326--68726390 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
68726316 TTAAAGCCTT
* *
68726326 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
68726348 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
68726370 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
68726391 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:68726569 original size:25 final size:26
Alignment explanation
Indices: 68726541--68726596 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
68726531 TGCCACGTAT
* *
68726541 TCTGTT-AAGTGGCTTTGCCACATTA
1 TCTGTTCAAGTGGCTCTGCCACAATA
**
68726566 TCTGTTCTGGTGGCTCTGCCACAATA
1 TCTGTTCAAGTGGCTCTGCCACAATA
68726592 TCTGT
1 TCTGT
68726597 ATCTGGTGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.39
Consensus pattern (26 bp):
TCTGTTCAAGTGGCTCTGCCACAATA
Found at i:68726585 original size:26 final size:27
Alignment explanation
Indices: 68726549--68726622 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
68726539 ATTCTGTTAA
* *
68726549 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
68726575 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* * *
68726602 GTGACTCTGTCAGAATATCTG
1 GTGGCTCTGCCACAATATCTG
68726623 ATAACTGAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:68726797 original size:6 final size:6
Alignment explanation
Indices: 68726782--68726946 Score: 133
Period size: 6 Copynumber: 26.8 Consensus size: 6
68726772 ATTCTGTTAC
* * *
68726782 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
68726831 TTGATT CTG-TT ACCTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT
*
68726881 CTGATT CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
*
68726930 CTAATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
68726947 AATATTTCTT
Statistics
Matches: 129, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
5 8 0.06
6 104 0.81
7 13 0.10
8 4 0.03
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:68726937 original size:31 final size:31
Alignment explanation
Indices: 68726761--68726931 Score: 267
Period size: 31 Copynumber: 5.5 Consensus size: 31
68726751 GCATTCACTC
68726761 TCTGATTTTTGATTCTGTTACCTGATACTGAT
1 TCTGA-TTTTGATTCTGTTACCTGATACTGAT
68726793 TCTGATTTTGATTCTGTTACCTGATACTGAT
1 TCTGATTTTGATTCTGTTACCTGATACTGAT
68726824 TCTGATTTTGATTCTGTTACCTGATACTGAT
1 TCTGATTTTGATTCTGTTACCTGATACTGAT
68726855 TCTGATTTTGATTCTGTTACCTGATACTGAT
1 TCTGATTTTGATTCTGTTACCTGATACTGAT
*
68726886 TCTGATTCTGATTCTGATT--CTG-TCACCTGAT
1 TCTGATTTTGATTCTG-TTACCTGAT-A-CTGAT
*
68726917 TCTGATTCTGATTCT
1 TCTGATTTTGATTCT
68726932 AATTCTAGTT
Statistics
Matches: 135, Mismatches: 1, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
29 1 0.01
30 4 0.03
31 123 0.91
32 7 0.05
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (31 bp):
TCTGATTTTGATTCTGTTACCTGATACTGAT
Found at i:68730898 original size:50 final size:50
Alignment explanation
Indices: 68730674--68731116 Score: 354
Period size: 50 Copynumber: 8.8 Consensus size: 50
68730664 GTAACCGAAG
* * *
68730674 CTATCTGGTACACATAGTAGCCTGCATTTAGTACTACACATGCGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
** * **
68730723 GAATCTGGTACACGTAGTAGCCTGCACTTTGTACTACACACATGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * *
68730773 CCATTTGATACACGTAGTTGCCTGCACTTAGTACTACACACGTGA-TTGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * ** * * * * * **
68730823 GTTGTCAAGTACACATAGGAGCCTACACTTAGTCCCACACATACGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* *
68730874 CTATCTGGTACACGTAGTAGCCTACACTTAGTA-TAACACATGTGACCTAG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACT-ACACATGTGACCTAA
* * * * *
68730924 CCATCTGATACACGTAGTAGCTTGCACTTAGTACTACACACGTGA-TTGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * * * * * *
68730974 GTTGTCGGGTACGCATAATAGCCTACACTTAGTACTACACATGAGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * *
68731025 CTATCTGGTACACGTAGTAGCTTGCATTTAGTACTACACACGTGACCTAAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA
* *** * *
68731077 CCATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
68731117 AGAGTTCTCA
Statistics
Matches: 300, Mismatches: 83, Indels: 19
0.75 0.21 0.05
Matches are distributed among these distances:
49 41 0.14
50 156 0.52
51 67 0.22
52 36 0.12
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:68730933 original size:151 final size:151
Alignment explanation
Indices: 68730681--68731116 Score: 567
Period size: 151 Copynumber: 2.9 Consensus size: 151
68730671 AAGCTATCTG
* * * **
68730681 GTACACATAGTAGCCTGCATTTAGTACTACACATGCGACC-AAGAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTACACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
* * *
68730745 TGCACTTTGTACTACACACA-TGACCTAACCATTTGATACACGTAGTTGCCTGCACTTAGTACTA
66 TGCACTTAGTACTA-ACACAGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
68730809 CACACGTGATTGAAGTTGTCAA
130 CACACGTGATTGAAGTTGTCAA
* * *
68730831 GTACACATAGGAGCCTACACTTAGTCCCACACATACGACCTAACTATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTACACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
* * *
68730896 TACACTTAGTA-TAACACATGTGACCTAGCCATCTGATACACGTAGTAGCTTGCACTTAGTACTA
66 TGCACTTAGTACTAACACA-GTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
**
68730960 CACACGTGATTGAAGTTGTCGG
130 CACACGTGATTGAAGTTGTCAA
* *
68730982 GTACGCATAATAGCCTACACTTAGTACTACACATGA-GACCTAACTATCTGGTACACGTAGTAGC
1 GTACACATAGTAGCCTACACTTAGTACTACACAT-ACGACCTAACTATCTGGTACACGTAGTAGC
* * * * * *
68731046 TTGCATTTAGTACT-ACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCACATAGTA
65 CTGCACTTAGTACTAACACA-GTGACCT--AACCATCTGATACACGTAGTAGCCTGCACTTAGTA
68731110 CTACACA
127 CTACACA
68731117 AGAGTTCTCA
Statistics
Matches: 248, Mismatches: 31, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
149 5 0.02
150 36 0.15
151 169 0.68
152 2 0.01
153 36 0.15
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (151 bp):
GTACACATAGTAGCCTACACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
TGCACTTAGTACTAACACAGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
ACACGTGATTGAAGTTGTCAA
Found at i:68730985 original size:101 final size:101
Alignment explanation
Indices: 68730880--68731069 Score: 292
Period size: 101 Copynumber: 1.9 Consensus size: 101
68730870 CTAACTATCT
* * * *
68730880 GGTACACGTAGTAGCCTACACTTAGTA-TAACACATGTGACCTAGCCATCTGATACACGTAGTAG
1 GGTACACATAATAGCCTACACTTAGTACT-ACACATGAGACCTAACCATCTGATACACGTAGTAG
68730944 CTTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
65 CTTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
* * *
68730981 GGTACGCATAATAGCCTACACTTAGTACTACACATGAGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACACATAATAGCCTACACTTAGTACTACACATGAGACCTAACCATCTGATACACGTAGTAGC
*
68731046 TTGCATTTAGTACTACACACGTGA
66 TTGCACTTAGTACTACACACGTGA
68731070 CCTAAAACCA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 79 0.99
102 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (101 bp):
GGTACACATAATAGCCTACACTTAGTACTACACATGAGACCTAACCATCTGATACACGTAGTAGC
TTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
Found at i:68735303 original size:42 final size:42
Alignment explanation
Indices: 68735197--68735307 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 42
68735187 TACCATACCA
* ** *
68735197 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATCAAATCTCATATCG
* * * * *
68735239 ATTCCAATAGCCCAGCTATGGTCTTACA-CAAAGTCTCATCTGG
1 ATGCC-ATATCCCAGATATGGTCTTACATCAAA-TCTCATATCG
68735282 ATGCCATATCCCAGATATGGTCTTAC
1 ATGCCATATCCCAGATATGGTCTTAC
68735308 TGTAACCCTA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
42 25 0.45
43 30 0.55
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATCAAATCTCATATCG
Found at i:68740618 original size:25 final size:25
Alignment explanation
Indices: 68740566--68740650 Score: 68
Period size: 25 Copynumber: 3.4 Consensus size: 25
68740556 ACAACTCTCT
* * *
68740566 TGAGCTTCCCAA-TACTTGACTCTCA
1 TGAGCTTCCTAATTACTAG-CTCACA
*
68740591 TGAGCTTCCTAATATAC-AGCTCATA
1 TGAGCTTCCTAAT-TACTAGCTCACA
* *
68740616 TGATCTT-CTCATTACTTAGCTCACA
1 TGAGCTTCCTAATTAC-TAGCTCACA
68740641 TGAGCTTCCT
1 TGAGCTTCCT
68740651 GTTATATAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
23 3 0.06
24 4 0.09
25 34 0.72
26 3 0.06
27 3 0.06
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (25 bp):
TGAGCTTCCTAATTACTAGCTCACA
Found at i:68740660 original size:25 final size:25
Alignment explanation
Indices: 68740589--68740662 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
68740579 ACTTGACTCT
* *
68740589 CATGAGCTTCCTAATATACAGCTCA
1 CATGAGCTTCCTATTATATAGCTCA
* *
68740614 TATGATCTT-CTCATTACT-TAGCTCA
1 CATGAGCTTCCT-ATTA-TATAGCTCA
*
68740639 CATGAGCTTCCTGTTATATAGCTC
1 CATGAGCTTCCTATTATATAGCTC
68740663 GGAAGAGCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
24 3 0.08
25 32 0.84
26 3 0.08
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (25 bp):
CATGAGCTTCCTATTATATAGCTCA
Found at i:68756623 original size:43 final size:43
Alignment explanation
Indices: 68756576--68756669 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
68756566 TCTGGGATGT
** * *
68756576 TGGCATCAACTTGAGA-TATCGTGTAAGACCGTGTTTGGGACAC
1 TGGCATCAACTAAAGATTA-CGTGTAAGACCATGTCTGGGACAC
** *
68756619 TGGCATTGACTAAAGATTACGTGTAAGACCATGTCTGGGACAT
1 TGGCATCAACTAAAGATTACGTGTAAGACCATGTCTGGGACAC
68756662 TGGCATCA
1 TGGCATCA
68756670 TTTTTAATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
43 39 0.95
44 2 0.05
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
TGGCATCAACTAAAGATTACGTGTAAGACCATGTCTGGGACAC
Found at i:68759317 original size:36 final size:36
Alignment explanation
Indices: 68759231--68759329 Score: 93
Period size: 36 Copynumber: 2.8 Consensus size: 36
68759221 TTTTAATGAC
68759231 CAATTAAACCTC-ATTT-AACTATG-ATTAATTGACAT
1 CAATTAAACCTCAATTTCAA-T-TGAATTAATTGACAT
* *
68759266 --ATATATACACACAATTTCAATTGAATTAATTGACAT
1 CAAT-TAAAC-CTCAATTTCAATTGAATTAATTGACAT
*
68759302 CAATTAAACCTCAA-TTCAATAGAATTAA
1 CAATTAAACCTCAATTTCAATTGAATTAA
68759330 GCAATTAATT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
33 2 0.04
34 4 0.08
35 17 0.33
36 21 0.40
37 6 0.12
38 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.34
Consensus pattern (36 bp):
CAATTAAACCTCAATTTCAATTGAATTAATTGACAT
Found at i:68760993 original size:42 final size:42
Alignment explanation
Indices: 68760870--68761015 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 42
68760860 TTTCGTCATG
* *
68760870 TGATTTCGTGTAAGACCAC-GTCTAGGAC-GTTGGCATC-AACTTT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGTA--TT
* * * **
68760913 TGTTTTACGTGTAATACCATGTCTGGGACA-TCAACATCGTATT
1 TGATTT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGTATT
*
68760956 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATGTT
1 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-TATT
* *
68760999 TGATTACATGTAAGACC
1 TGATTTCGTGTAAGACC
68761016 ACTCTGGGAC
Statistics
Matches: 81, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
42 26 0.32
43 32 0.40
44 22 0.27
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGTATT
Found at i:68763867 original size:93 final size:93
Alignment explanation
Indices: 68763759--68763976 Score: 310
Period size: 93 Copynumber: 2.3 Consensus size: 93
68763749 CGCCCATAAG
* ** * * *
68763759 CGAACTCGGACTCAACTCAACGCGTTCGGGTGTTTGCATCTATAAGTGAAATTGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAATCGAACTCAACTCA
*
68763824 ACGAGCTCGGATGCCTAATTACATTTCA
66 ACGAGCTCGGATGCCTAATTACATCTCA
* * * *
68763852 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGATTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAATCGAACTCAACTCA
* *
68763917 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAATTACATCTCA
*
68763945 CGAACTCGGACTCAACTCAACGAGTTTGGACG
1 CGAACTCGGACTCAACTCAACGAGTTCGGACG
68763977 CACAAATATT
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 110 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAATCGAACTCAACTCA
ACGAGCTCGGATGCCTAATTACATCTCA
Found at i:68763872 original size:47 final size:46
Alignment explanation
Indices: 68763814--68763970 Score: 174
Period size: 47 Copynumber: 3.4 Consensus size: 46
68763804 GTGAAATTGA
*
68763814 ACTCAACTCAACGAGCTCGGATGCCTAATTACATTTCATGAACTCGG
1 ACTCAACTCAACGAGTTCGGATGCCTAATTACA-TTCATGAACTCGG
* * ** * *
68763861 ACTCAACTCAACGAGTTCGGACGTTCGCA-TCCA-TAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGATG-CCTAATTACATTCA-TGAACTCGG
* * *
68763907 ATTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGG
1 ACTCAACTCAACGAGTTCGGATGCCTAATTACAT-TCATGAACTCGG
68763954 ACTCAACTCAACGAGTT
1 ACTCAACTCAACGAGTT
68763971 TGGACGCACA
Statistics
Matches: 88, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
45 3 0.03
46 33 0.38
47 48 0.55
48 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (46 bp):
ACTCAACTCAACGAGTTCGGATGCCTAATTACATTCATGAACTCGG
Found at i:68769463 original size:47 final size:46
Alignment explanation
Indices: 68769410--68769571 Score: 161
Period size: 47 Copynumber: 3.5 Consensus size: 46
68769400 AGTGAACTTA
*
68769410 GACTCAACTCAACGAGCTTGGATGCCTAATTACATTTCACGAACTCG
1 GACTCAACTCAACGAGCTTGGATGCCT-ATTACATTTCATGAACTCG
* ** *
68769457 GACTCAACTCAACGAG-TTCGGA--CGT-TCGCATCTATAAGTGAACTCG
1 GACTCAACTCAACGAGCTT-GGATGCCTATTACAT-T-TCA-TGAACTCG
* * *
68769503 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTCA
1 GACTCAACTCAACGAGCTTGGATGCCTA-TTACATTTCATGAACTCG
*
68769550 GACTCAACTCAACGAGTTTGGA
1 GACTCAACTCAACGAGCTTGGA
68769572 CGCCCAAATA
Statistics
Matches: 92, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 28 0.30
47 47 0.51
48 4 0.04
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
GACTCAACTCAACGAGCTTGGATGCCTATTACATTTCATGAACTCG
Found at i:68769511 original size:46 final size:46
Alignment explanation
Indices: 68769351--68769524 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
68769341 TAACCCGCCC
* * *
68769351 ATAAGCGAACTCGGACTCAACTCAATGAGTTCGGGCATTCACATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCT
* **
68769397 ATAAGTGAACTTAGACTCAACTCAACGAGCTT-GGATGCCTAATT-ACAT-T
1 ATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGA---C--ATTCACATCT
* * *
68769446 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCT
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCT
* *
68769490 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68769525 TGCCTAGTTA
Statistics
Matches: 102, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.56
47 26 0.25
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCT
Found at i:68769515 original size:93 final size:93
Alignment explanation
Indices: 68769356--68769573 Score: 319
Period size: 93 Copynumber: 2.3 Consensus size: 93
68769346 CGCCCATAAG
* * * *
68769356 CGAACTCGGACTCAACTCAATGAGTTCGGGCATTCACATCCATAAGTGAACTTAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCA
* *
68769421 ACGAGCTTGGATGCCTAATTACATTTCA
66 ACGAGCTCGGATGCCTAATTACATCTCA
* * *
68769449 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCA
*
68769514 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAATTACATCTCA
* * *
68769542 TGAACTCAGACTCAACTCAACGAGTTTGGACG
1 CGAACTCGGACTCAACTCAACGAGTTCGGACG
68769574 CCCAAATATT
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 112 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAATTACATCTCA
Found at i:68772477 original size:42 final size:42
Alignment explanation
Indices: 68772431--68772584 Score: 200
Period size: 42 Copynumber: 3.6 Consensus size: 42
68772421 TAAGACTACG
* * * *
68772431 TGTAAAACCATATCTAGGATATGACATCAATATGAGATTTCG
1 TGTAAAACCATATCTGGGATATGGCATCGATATGAGATTTCA
*
68772473 TGTAAAACCATATCTGGGATATGGCATCGATATGAGACTTCA
1 TGTAAAACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * * *
68772515 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTACA
1 TGTAAAACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
*
68772558 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAAACCATATCTGGGATATGGCAT
68772585 TGGTACGGTA
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
42 61 0.62
43 37 0.38
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAAACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:68778593 original size:44 final size:44
Alignment explanation
Indices: 68778468--68778607 Score: 131
Period size: 44 Copynumber: 3.1 Consensus size: 44
68778458 TGCCAATATG
* * * * *
68778468 TATATATAGCCGAAGCTATCACAATCACGCACTC-TAAGTGCCAA
1 TATATTTAGCCGAAGCTATCTCAGTCTCGCACACTTAA-TGCCAA
* * * *
68778512 TATATGTATATAACTGAAGTTATCT-GGTCTCGCACACTTAATGCCAA
1 TATA--T-T-TAGCCGAAGCTATCTCAGTCTCGCACACTTAATGCCAA
*
68778559 TATATTTAGCCGAAGCTATCTCAGTCTCGCACACTTAGTGCCAA
1 TATATTTAGCCGAAGCTATCTCAGTCTCGCACACTTAATGCCAA
68778603 TATAT
1 TATAT
68778608 AACCGAATTA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 12 0.16
44 30 0.39
45 1 0.01
46 1 0.01
47 18 0.24
48 14 0.18
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (44 bp):
TATATTTAGCCGAAGCTATCTCAGTCTCGCACACTTAATGCCAA
Found at i:68793698 original size:12 final size:12
Alignment explanation
Indices: 68793681--68793705 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68793671 TGAGCCACGT
68793681 AACTCCAAATTA
1 AACTCCAAATTA
68793693 AACTCCAAATTA
1 AACTCCAAATTA
68793705 A
1 A
68793706 GATCCTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (12 bp):
AACTCCAAATTA
Found at i:68794542 original size:51 final size:51
Alignment explanation
Indices: 68794449--68794545 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 51
68794439 CTACCTTCTT
* * *
68794449 CACAAAGTGACTTTCACATAGTACCACACTTATGACCAAAGCTATCTTTAA
1 CACAAAGTGACTTGCACATAGCACCACACATATGACCAAAGCTATCTTTAA
* * * * *
68794500 CACATAGTGACTTGCACTTAGCACCACACATGTGATCGAAGCTATC
1 CACAAAGTGACTTGCACATAGCACCACACATATGACCAAAGCTATC
68794546 GAGTACGCAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (51 bp):
CACAAAGTGACTTGCACATAGCACCACACATATGACCAAAGCTATCTTTAA
Found at i:68794615 original size:50 final size:51
Alignment explanation
Indices: 68794553--68794684 Score: 169
Period size: 50 Copynumber: 2.6 Consensus size: 51
68794543 ATCGAGTACG
*
68794553 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AACCA-TCTAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATTCTAAT-CA
* * * *
68794603 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAATCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAACCATTCTAATCA
* *
68794655 CATAGTAGCCTACACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
68794685 TATTCTCACA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 33 0.47
52 33 0.47
53 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATTCTAATCA
Found at i:68796149 original size:20 final size:20
Alignment explanation
Indices: 68796126--68796163 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
68796116 AAACAGTAGC
68796126 TCATCCATATAAACAATAAT
1 TCATCCATATAAACAATAAT
68796146 TCATCCATATAAACAATA
1 TCATCCATATAAACAATA
68796164 TTTATACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (20 bp):
TCATCCATATAAACAATAAT
Found at i:68796341 original size:24 final size:24
Alignment explanation
Indices: 68796301--68796392 Score: 114
Period size: 24 Copynumber: 3.9 Consensus size: 24
68796291 AGCTTAAACG
*
68796301 GTAAGCTCTGACGAGCTGAAAATA
1 GTAAGCTCTTACGAGCTGAAAATA
* * *
68796325 GTAAGCTTTTACAAGCTG-AAACA
1 GTAAGCTCTTACGAGCTGAAAATA
**
68796348 GTAAGCTCCAACGAGCTGAAAATA
1 GTAAGCTCTTACGAGCTGAAAATA
*
68796372 GTAAGCTCTTATGAGCTGAAA
1 GTAAGCTCTTACGAGCTGAAA
68796393 TATCGATAAG
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
23 18 0.33
24 37 0.67
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (24 bp):
GTAAGCTCTTACGAGCTGAAAATA
Found at i:68796352 original size:47 final size:47
Alignment explanation
Indices: 68796291--68796392 Score: 141
Period size: 47 Copynumber: 2.2 Consensus size: 47
68796281 ATCTCTATTG
* * ** *
68796291 AGCTTAAACGGTAAGCTCTGACGAGCTGAAAATAGTAAGCTTTTACA
1 AGCTGAAACAGTAAGCTCCAACGAGCTGAAAATAGTAAGCTCTTACA
**
68796338 AGCTGAAACAGTAAGCTCCAACGAGCTGAAAATAGTAAGCTCTTATG
1 AGCTGAAACAGTAAGCTCCAACGAGCTGAAAATAGTAAGCTCTTACA
68796385 AGCTGAAA
1 AGCTGAAA
68796393 TATCGATAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (47 bp):
AGCTGAAACAGTAAGCTCCAACGAGCTGAAAATAGTAAGCTCTTACA
Found at i:68796354 original size:23 final size:23
Alignment explanation
Indices: 68796291--68796380 Score: 72
Period size: 24 Copynumber: 3.8 Consensus size: 23
68796281 ATCTCTATTG
* * *
68796291 AGCTTAAACGGTAAGCTCTGACG
1 AGCTGAAACAGTAAGCTCTGACA
* * *
68796314 AGCTGAAAATAGTAAGCTTTTACA
1 AGCTG-AAACAGTAAGCTCTGACA
** *
68796338 AGCTGAAACAGTAAGCTCCAACG
1 AGCTGAAACAGTAAGCTCTGACA
*
68796361 AGCTGAAAATAGTAAGCTCT
1 AGCTG-AAACAGTAAGCTCT
68796381 TATGAGCTGA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
23 22 0.42
24 30 0.58
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCTGACA
Found at i:68805555 original size:85 final size:85
Alignment explanation
Indices: 68805445--68805614 Score: 181
Period size: 85 Copynumber: 2.0 Consensus size: 85
68805435 GAGCATATAT
*
68805445 AAAAAATGTGATATAATATATAATAT-AAA-A-AAAATATTTATAAGAATAATAATTATATACAA
1 AAAAAATGTGATAAAATATATAATATGAAAGATAAAATATTTATAAGAA-AATAATTATATA-AA
68805507 ATATA-AAATATAATGGTTTAGAA
64 ATATATAAATATAA--GTTTAGAA
*** * * *
68805530 AAAATAATGT-ATAAAATATCA-AATATGAAAGATTTTATATTTATAATAAAATAATTGTATAAT
1 AAAA-AATGTGATAAAATAT-ATAATATGAAAGATAAAATATTTATAAGAAAATAATTATATAAA
68805593 ATATATAAATATAAGTTTAGAA
64 ATATATAAATATAAGTTTAGAA
68805615 TAATATGAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
85 25 0.35
86 15 0.21
87 20 0.28
88 12 0.17
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.35
Consensus pattern (85 bp):
AAAAAATGTGATAAAATATATAATATGAAAGATAAAATATTTATAAGAAAATAATTATATAAAAT
ATATAAATATAAGTTTAGAA
Found at i:68805916 original size:17 final size:16
Alignment explanation
Indices: 68805896--68805987 Score: 57
Period size: 17 Copynumber: 5.6 Consensus size: 16
68805886 ACGTAATACA
68805896 AGTAGAAATATAATAAT
1 AGTA-AAATATAATAAT
68805913 AGTATATAA-ATAATAAT
1 AGTA-A-AATATAATAAT
*
68805930 -GTAAAATAATAATAGTT
1 AGTAAAAT-ATAATA-AT
* *
68805947 TGTAAAAAATAATATAT
1 AGTAAAATATAATA-AT
*
68805964 AAT-AAATAATAATAAT
1 AGTAAAAT-ATAATAAT
68805980 A-TAAAATA
1 AGTAAAATA
68805988 ATGTATAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
14 2 0.03
15 3 0.05
16 19 0.32
17 28 0.47
18 8 0.13
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (16 bp):
AGTAAAATATAATAAT
Found at i:68805941 original size:20 final size:20
Alignment explanation
Indices: 68805918--68805998 Score: 53
Period size: 20 Copynumber: 4.0 Consensus size: 20
68805908 ATAATAGTAT
68805918 ATAAATAATAATGTAAAATA
1 ATAAATAATAATGTAAAATA
* *
68805938 AT-AATAGT-TTGTAAAAAATA
1 ATAAATAATAATGT--AAAATA
* *
68805958 ATATATAATAA-ATAATAATA
1 ATAAATAATAATGTAA-AATA
*
68805978 ATATAA-AATAATGTATAATA
1 ATA-AATAATAATGTAAAATA
68805998 A
1 A
68805999 AATAATTATA
Statistics
Matches: 45, Mismatches: 9, Indels: 14
0.66 0.13 0.21
Matches are distributed among these distances:
18 3 0.07
19 7 0.16
20 27 0.60
21 8 0.18
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
ATAAATAATAATGTAAAATA
Found at i:68805941 original size:30 final size:31
Alignment explanation
Indices: 68805905--68806033 Score: 99
Period size: 30 Copynumber: 4.2 Consensus size: 31
68805895 AAGTAGAAAT
* *
68805905 ATAATAATAGTATATA-AATAATAATGTAAA
1 ATAATAATAATATATATAATAATAATATAAA
* * * * *
68805935 ATAATAATAGTTTGTA-AAAAATAATATATA
1 ATAATAATAATATATATAATAATAATATAAA
* *
68805965 ATAAATAATAATA-ATATAA-AATAATGTATA
1 AT-AATAATAATATATATAATAATAATATAAA
68805995 ATAA-AATAAT-TATATAATATATAATATAAA
1 ATAATAATAATATATATAATA-ATAATATAAA
68806025 GATATATAA
1 -ATA-ATAA
68806034 ACATTATGTG
Statistics
Matches: 80, Mismatches: 11, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
28 12 0.15
29 3 0.04
30 49 0.61
31 13 0.16
32 1 0.01
33 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (31 bp):
ATAATAATAATATATATAATAATAATATAAA
Found at i:68805980 original size:23 final size:23
Alignment explanation
Indices: 68805905--68806033 Score: 78
Period size: 23 Copynumber: 5.7 Consensus size: 23
68805895 AAGTAGAAAT
*
68805905 ATAATAATAGTATATAA-ATAATA
1 ATAATAATAATATATAATAT-ATA
* * *
68805928 ATGTAA-AATAATA-ATAGTTTGTA
1 A--TAATAATAATATATAATATATA
*
68805951 A-AA-AATAATATATAATAAATA
1 ATAATAATAATATATAATATATA
* *
68805972 ATAATAAT-ATAAAATAATGTATA
1 ATAATAATAAT-ATATAATATATA
68805995 ATAA-AATAATTATATAATATATA
1 ATAATAATAA-TATATAATATATA
68806018 AT-ATAA-AGATATATAA
1 ATAATAATA-ATATATAA
68806034 ACATTATGTG
Statistics
Matches: 82, Mismatches: 13, Indels: 23
0.69 0.11 0.19
Matches are distributed among these distances:
20 9 0.11
21 7 0.09
22 16 0.20
23 39 0.48
24 8 0.10
25 3 0.04
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (23 bp):
ATAATAATAATATATAATATATA
Found at i:68806018 original size:15 final size:14
Alignment explanation
Indices: 68805955--68806033 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 14
68805945 TTTGTAAAAA
*
68805955 ATAATATATAATAA
1 ATAATATATAATAT
68805969 ATAATA-ATAATAT
1 ATAATATATAATAT
* *
68805982 AAAATAATGTATAATAAA
1 ---ATAATATATAAT-AT
68806000 ATAATTATATAATAT
1 ATAA-TATATAATAT
*
68806015 ATAATATAAAGATAT
1 ATAATATATA-ATAT
68806030 ATAA
1 ATAA
68806034 ACATTATGTG
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
13 6 0.12
14 11 0.21
15 17 0.33
16 12 0.23
17 5 0.10
18 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
ATAATATATAATAT
Found at i:68806018 original size:20 final size:20
Alignment explanation
Indices: 68805952--68806023 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
68805942 TAGTTTGTAA
*
68805952 AAAATAA-TATATAATAAAT
1 AAAATAATTATATAATATAT
*
68805971 AATAATAATATAAAATAATGTATAAT
1 AA-AATAAT-T-ATATAA--TAT-AT
68805997 AAAATAATTATATAATATAT
1 AAAATAATTATATAATATAT
*
68806017 AATATAA
1 AAAATAA
68806024 AGATATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
19 2 0.05
20 13 0.31
21 3 0.07
22 1 0.02
23 10 0.24
24 1 0.02
25 8 0.19
26 4 0.10
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (20 bp):
AAAATAATTATATAATATAT
Found at i:68807169 original size:15 final size:15
Alignment explanation
Indices: 68807149--68807183 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
68807139 TAGTGTGCCG
68807149 ATCACGGATCCTGGA
1 ATCACGGATCCTGGA
68807164 ATCACGGATCCTGGA
1 ATCACGGATCCTGGA
68807179 ATCAC
1 ATCAC
68807184 AACGCTGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (15 bp):
ATCACGGATCCTGGA
Found at i:68808118 original size:205 final size:205
Alignment explanation
Indices: 68807763--68808346 Score: 954
Period size: 205 Copynumber: 2.8 Consensus size: 205
68807753 AAATCTGCTT
* *
68807763 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCAACTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
68807828 GTGAAAGCCAAATCGGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * **
68807893 GGATCTTCTTCAGAATAAACATCTGAAGGTGAGATCTGCTGTGTATCTGCTTTCCGTCGAAGTGG
131 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
68807958 AGATGCCAGA
196 AGATGCCAGA
68807968 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * **
68808033 ATGAAAGCCAAATTAGCTATGTCTTCGATTCACTCCTTGTAAGCACAAGAATGCCAAATCATCCC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
68808098 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTTCTCCCCGTCGAAGTGG
131 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
68808163 AGATGCCAGA
196 AGATGCCAGA
* *
68808173 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAAAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
68808238 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
68808303 GGATCTTGCTTCAGTATAAACATCTGAAGGCT-AGATCTGCTATG
131 GGATC-TCCTTCAGTATAAACATCTGAAGG-TGAGATCTGCTATG
68808347 CTGCGGCCTA
Statistics
Matches: 350, Mismatches: 27, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
205 314 0.90
206 35 0.10
207 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
AGATGCCAGA
Found at i:68820602 original size:30 final size:31
Alignment explanation
Indices: 68820566--68820694 Score: 90
Period size: 30 Copynumber: 4.2 Consensus size: 31
68820556 AAGTAGAAAT
* *
68820566 ATAATAATAGTATATA-AATAATAATGTAAA
1 ATAATAATAATATATATAATAATAATATAAA
* * * * *
68820596 ATAATAATAGTTTGTA-AAAAATAATATATA
1 ATAATAATAATATATATAATAATAATATAAA
* * *
68820626 ATAAATAATAACA-ATATAA-AATAATGTATA
1 AT-AATAATAATATATATAATAATAATATAAA
68820656 ATAA-AATAAT-TATATAATATATAATATAAA
1 ATAATAATAATATATATAATA-ATAATATAAA
68820686 GATATATAA
1 -ATA-ATAA
68820695 ACATTATGTG
Statistics
Matches: 78, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
28 11 0.14
29 3 0.04
30 49 0.63
31 12 0.15
32 1 0.01
33 2 0.03
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (31 bp):
ATAATAATAATATATATAATAATAATATAAA
Found at i:68820628 original size:7 final size:7
Alignment explanation
Indices: 68820616--68820694 Score: 52
Period size: 7 Copynumber: 10.6 Consensus size: 7
68820606 TTTGTAAAAA
68820616 ATAATAT
1 ATAATAT
*
68820623 ATAATAA
1 ATAATAT
68820630 ATAATA-
1 ATAATAT
*
68820636 ACAATAT
1 ATAATAT
*
68820643 AAAATAATGT
1 ---ATAATAT
*
68820653 ATAATAAA
1 ATAAT-AT
68820661 ATAATTAT
1 ATAA-TAT
68820669 ATAATAT
1 ATAATAT
68820676 ATAATAT
1 ATAATAT
*
68820683 AAAGATAT
1 ATA-ATAT
68820691 ATAA
1 ATAA
68820695 ACATTATGTG
Statistics
Matches: 56, Mismatches: 9, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
6 5 0.09
7 30 0.54
8 15 0.27
9 1 0.02
10 5 0.09
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (7 bp):
ATAATAT
Found at i:68820641 original size:23 final size:22
Alignment explanation
Indices: 68820566--68820694 Score: 79
Period size: 23 Copynumber: 5.7 Consensus size: 22
68820556 AAGTAGAAAT
*
68820566 ATAATAATAGTATATAA-ATAATA
1 ATAA-AATAATATATAATAT-ATA
* * *
68820589 ATGTAAAATAATA-ATAGTTTGTA
1 A--TAAAATAATATATAATATATA
*
68820612 A-AAAATAATATATAATAAATA
1 ATAAAATAATATATAATATATA
* *
68820633 ATAACAAT-ATAAAATAATGTATA
1 ATAA-AATAAT-ATATAATATATA
68820656 ATAAAATAATTATATAATATATA
1 ATAAAATAA-TATATAATATATA
*
68820679 ATATAAA-GATATATAA
1 ATA-AAATAATATATAA
68820695 ACATTATGTG
Statistics
Matches: 82, Mismatches: 14, Indels: 21
0.70 0.12 0.18
Matches are distributed among these distances:
20 9 0.11
21 7 0.09
22 14 0.17
23 38 0.46
24 11 0.13
25 3 0.04
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (22 bp):
ATAAAATAATATATAATATATA
Found at i:68836810 original size:43 final size:43
Alignment explanation
Indices: 68836749--68836834 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
68836739 GGGAATAAAA
68836749 AGATTCAGTTGAGTTGTCTAGGAATAGAATTCTCCACTCGATT
1 AGATTCAGTTGAGTTGTCTAGGAATAGAATTCTCCACTCGATT
68836792 AGATTCAGTTGAGTTGTCTAGGAATAGAATTCTCCACTCGATT
1 AGATTCAGTTGAGTTGTCTAGGAATAGAATTCTCCACTCGATT
68836835 CTTTCTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (43 bp):
AGATTCAGTTGAGTTGTCTAGGAATAGAATTCTCCACTCGATT
Found at i:68836946 original size:18 final size:18
Alignment explanation
Indices: 68836923--68836968 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
68836913 AATGTTAGCA
68836923 TATTTAATCTGCTTTTAT
1 TATTTAATCTGCTTTTAT
*
68836941 TATTTAATCTGGTTTTAT
1 TATTTAATCTGCTTTTAT
*
68836959 TTTTTAATCT
1 TATTTAATCT
68836969 TAGGGTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.63
Consensus pattern (18 bp):
TATTTAATCTGCTTTTAT
Found at i:68838617 original size:38 final size:38
Alignment explanation
Indices: 68838566--68838642 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
68838556 GAGTTGGGTG
* *
68838566 TTCTTGGAGA-TTTTGTTCTCAATGCTGAAGGTGTCCTT
1 TTCTTGGAGATTTTTG-TCTCAATGATGAAAGTGTCCTT
68838604 TTCTTGGAGATTTTTGTCTCAATGATGAAAGTGTCCTT
1 TTCTTGGAGATTTTTGTCTCAATGATGAAAGTGTCCTT
68838642 T
1 T
68838643 GTTTCAAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 31 0.86
39 5 0.14
ACGTcount: A:0.18, C:0.14, G:0.22, T:0.45
Consensus pattern (38 bp):
TTCTTGGAGATTTTTGTCTCAATGATGAAAGTGTCCTT
Found at i:68850629 original size:172 final size:172
Alignment explanation
Indices: 68850343--68850687 Score: 618
Period size: 172 Copynumber: 2.0 Consensus size: 172
68850333 GGATTATAAG
*
68850343 TTAAATTGATGTTTACTAAGTGAATTCGTGAAACATAGAAATGTGTTATTAATTATAAGTTAAAA
1 TTAAATTGATGTTTACTAAGTGAATTCGTGAAACATAGAAATGTATTATTAATTATAAGTTAAAA
* *
68850408 ACGATTTCAGCATAAATTGATTTCTGATTCAGAACTTCAAATGTGAAATTGATGATTGCTTGTTT
66 ACGATTTCAGCATAAATTGATTTCTGATTCAGAACTTCAAATGTGAAATTGATGATTACTTGTTG
*
68850473 CTTTGAAATAAAGTGTGTATACCAAGAAGCTCTGAGATTGTA
131 CTTTGAAATAAAGTGTGTATACCAAGAAGCTCTAAGATTGTA
68850515 TTAAATTGATGTTTACTAAGTGAATTCGTGAAACATAGAAATGTATTATTAATTATAAGTTAAAA
1 TTAAATTGATGTTTACTAAGTGAATTCGTGAAACATAGAAATGTATTATTAATTATAAGTTAAAA
* * *
68850580 AGGATTTCAGTATAAATTGATTTCTGATTCAGAACTTCAGATGTGAAATTGATGATTACTTGTTG
66 ACGATTTCAGCATAAATTGATTTCTGATTCAGAACTTCAAATGTGAAATTGATGATTACTTGTTG
*
68850645 CTTTGAAATAAAGTGTGTATACCAATAAGCTCTAAGATTGTA
131 CTTTGAAATAAAGTGTGTATACCAAGAAGCTCTAAGATTGTA
68850687 T
1 T
68850688 AACCATTGTT
Statistics
Matches: 165, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
172 165 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (172 bp):
TTAAATTGATGTTTACTAAGTGAATTCGTGAAACATAGAAATGTATTATTAATTATAAGTTAAAA
ACGATTTCAGCATAAATTGATTTCTGATTCAGAACTTCAAATGTGAAATTGATGATTACTTGTTG
CTTTGAAATAAAGTGTGTATACCAAGAAGCTCTAAGATTGTA
Found at i:68852803 original size:30 final size:30
Alignment explanation
Indices: 68852747--68852804 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
68852737 TATGATTTCA
**
68852747 TGTAAGACCACGTCTGGGACGTTGGCATAG
1 TGTAAGACCACGTCTGGGACACTGGCATAG
**
68852777 TGTAAGACCGTGTCTGGGACACTGGCAT
1 TGTAAGACCACGTCTGGGACACTGGCAT
68852805 TGATTAAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (30 bp):
TGTAAGACCACGTCTGGGACACTGGCATAG
Found at i:68857022 original size:42 final size:43
Alignment explanation
Indices: 68856947--68857058 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 43
68856937 GACTTTTATT
*
68856947 TTACGTGTAATACCATGTCTGGGACATCAGCATC-ATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACATCAGCATCGATATTTGA
* * * * *
68856989 TTTCGTGTAAGACCCTGTCTGGGATAGT-GGCATCGATGTTTGA
1 TTACGTGTAAGACCATGTCTGGGACA-TCAGCATCGATATTTGA
* * *
68857032 TTACATGTAAGACCACGTCTAGGACAT
1 TTACGTGTAAGACCATGTCTGGGACAT
68857059 TGGCATTGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATCAGCATCGATATTTGA
Found at i:68857063 original size:43 final size:42
Alignment explanation
Indices: 68856907--68857064 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
68856897 ATGTGATTTT
* **
68856907 GTGTAAGACCACATCTAGGATGTTGGCATCGACTTTT-ATTTTAC
1 GTGTAAGACCACGTCTAGGACATTGGCATCGA-TTTTGA--TTAC
* * * ** *
68856951 GTGTAATACCATGTCTGGGACATCAGCATC-ATATTTGATTTC
1 GTGTAAGACCACGTCTAGGACATTGGCATCGAT-TTTGATTAC
* * *
68856993 GTGTAAGACC-CTGTCTGGGATAGTGGCATCGATGTTTGATTAC
1 GTGTAAGACCAC-GTCTAGGACATTGGCATCGAT-TTTGATTAC
*
68857036 ATGTAAGACCACGTCTAGGACATTGGCAT
1 GTGTAAGACCACGTCTAGGACATTGGCAT
68857065 TGTATATGTT
Statistics
Matches: 88, Mismatches: 21, Indels: 11
0.73 0.17 0.09
Matches are distributed among these distances:
42 27 0.31
43 37 0.42
44 24 0.27
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCACGTCTAGGACATTGGCATCGATTTTGATTAC
Found at i:68858810 original size:19 final size:19
Alignment explanation
Indices: 68858786--68858823 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
68858776 CATACATCGG
68858786 ATAAACGGATCTCCGGACT
1 ATAAACGGATCTCCGGACT
*
68858805 ATAAACGGATCTCTGGACT
1 ATAAACGGATCTCCGGACT
68858824 CCCACAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (19 bp):
ATAAACGGATCTCCGGACT
Found at i:68860215 original size:43 final size:42
Alignment explanation
Indices: 68860082--68860237 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
68860072 ACTAATACTA
*
68860082 CGTGTAAAACCATATCTAGGATATGGCATCAATATGAGACTT
1 CGTGTAAAACCATATCTAGGATATGGCATCGATATGAGACTT
68860124 CGTGTAAAACCATATCTAGGATATGGCATCGATATGAGACTT
1 CGTGTAAAACCATATCTAGGATATGGCATCGATATGAGACTT
* * * * * *
68860166 CATGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGA-TT
1 CGTGTAAAACCATATCTAGGATA-TGGCATCGATATGAGACTT
* * * *
68860208 ACGTGTAAGACCAGATTTGGGATATGGCAT
1 -CGTGTAAAACCATATCTAGGATATGGCAT
68860238 TGGTACGGTA
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
42 67 0.67
43 33 0.33
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
CGTGTAAAACCATATCTAGGATATGGCATCGATATGAGACTT
Found at i:68867028 original size:50 final size:50
Alignment explanation
Indices: 68866908--68867076 Score: 232
Period size: 50 Copynumber: 3.4 Consensus size: 50
68866898 ATCTATTGTG
* * * * * * * **
68866908 AGGTCAGGTCTGTAGTACTAAGTCCAGGCTATTATGTGTACCGGATAATT
1 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
**
68866958 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
68867007 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
68867057 AGGTCATGTGTGTAGTACTA
1 AGGTCATGTGTGTAGTACTA
68867077 CGTGTACCAG
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
49 39 0.37
50 67 0.63
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (50 bp):
AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:68867104 original size:35 final size:36
Alignment explanation
Indices: 68867036--68867111 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
68867026 AAGTGCAGGC
* ** **
68867036 TACTACGTGTATCAGATGGTTAGGTCATGTGTGTAG
1 TACTACGTGTACCAGATAATTAGGTCACATGTGTAG
68867072 TACTACGTGTACCAGATAATT-GGTCACATGTGTAG
1 TACTACGTGTACCAGATAATTAGGTCACATGTGTAG
68867107 TACTA
1 TACTA
68867112 AGTGCAAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
35 17 0.49
36 18 0.51
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (36 bp):
TACTACGTGTACCAGATAATTAGGTCACATGTGTAG
Found at i:68877911 original size:40 final size:40
Alignment explanation
Indices: 68877760--68877904 Score: 197
Period size: 40 Copynumber: 3.6 Consensus size: 40
68877750 TTGAATGATG
* * * *
68877760 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
68877799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
68877839 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
68877880 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
68877905 AACGAGTAGC
Statistics
Matches: 97, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
39 25 0.26
40 70 0.72
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68877911 original size:80 final size:79
Alignment explanation
Indices: 68877760--68877937 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 79
68877750 TTGAATGATG
* * *
68877760 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAACCGGGCTAAGTCCCGAAGGCATTTG
**
68877825 TGCGAGTTA-CTAAA
66 AACGAG-TAGCTAAA
* * * *
68877839 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCA-AACCGGGCTAAGTCCCGAAGGCATT
*
68877903 TGAACGAGTAGCTATA
64 TGAACGAGTAGCTAAA
* *
68877919 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68877938 TACGTGATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 42 0.50
80 42 0.50
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAACCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTAGCTAAA
Found at i:68882927 original size:33 final size:31
Alignment explanation
Indices: 68882849--68882933 Score: 75
Period size: 33 Copynumber: 2.6 Consensus size: 31
68882839 TCATGAGATT
68882849 GCACTAAGTGTGCGGGTTTAAATTAGTACAGC
1 GCACTAAGTGTGCGGGTTTAAA-TAGTACAGC
* *
68882881 ACACTATGTTGTGCGAGAGTTTAAA-AGTACAATG-
1 GCACTAAG-TGTGCG-G-GTTTAAATAGTAC-A-GC
68882915 GCACTAAGTGTGCGCGGTT
1 GCACTAAGTGTGCG-GGTT
68882934 GATTATTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
32 9 0.21
33 18 0.42
34 8 0.19
35 8 0.19
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (31 bp):
GCACTAAGTGTGCGGGTTTAAATAGTACAGC
Found at i:68889864 original size:29 final size:28
Alignment explanation
Indices: 68889828--68889905 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
68889818 TCATGAGATT
68889828 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
68889858 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
68889885 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
68889906 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:68890179 original size:173 final size:174
Alignment explanation
Indices: 68889858--68890184 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
68889848 AAATTGTACA
* *
68889858 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
68889923 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
68889988 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
68890032 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
68890097 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
68890161 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
68890185 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:68898017 original size:29 final size:28
Alignment explanation
Indices: 68897981--68898058 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
68897971 TCATGAGATT
68897981 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
68898011 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
68898038 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
68898059 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:68898332 original size:173 final size:174
Alignment explanation
Indices: 68898011--68898337 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
68898001 AAATTGTACA
* *
68898011 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
68898076 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
68898141 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
68898185 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
68898250 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
68898314 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
68898338 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Done.