Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 200 of 311
Found at i:68901716 original size:13 final size:13
Alignment explanation
Indices: 68901698--68901739 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
68901688 CCGTGTGTCG
68901698 CACACGGTCGAGA
1 CACACGGTCGAGA
*
68901711 CACAC-G-C-CGA
1 CACACGGTCGAGA
68901721 CACACGGTCGAGA
1 CACACGGTCGAGA
68901734 CACACG
1 CACACG
68901740 CCAGTGTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.31, C:0.38, G:0.26, T:0.05
Consensus pattern (13 bp):
CACACGGTCGAGA
Found at i:68901727 original size:23 final size:23
Alignment explanation
Indices: 68901698--68901741 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
68901688 CCGTGTGTCG
68901698 CACACGGTCGAGACACACGCCGA
1 CACACGGTCGAGACACACGCCGA
68901721 CACACGGTCGAGACACACGCC
1 CACACGGTCGAGACACACGCC
68901742 AGTGTCTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.41, G:0.25, T:0.05
Consensus pattern (23 bp):
CACACGGTCGAGACACACGCCGA
Found at i:68903861 original size:50 final size:50
Alignment explanation
Indices: 68903802--68903911 Score: 132
Period size: 50 Copynumber: 2.2 Consensus size: 50
68903792 CCCTCGTAGT
* * *
68903802 CAAAGCTATCTTCTT-CACAAAGTGGCCTTCACATAGTACCACACTTTGAC
1 CAAAGCTATCTT-TTACACAAAGTGGCCTGCACATAGCACCACACTGTGAC
* * * *
68903852 CAAAGCTATCTTTTACACATAGTGGCCTGCACTTAGCATCACACTGTGAT
1 CAAAGCTATCTTTTACACAAAGTGGCCTGCACATAGCACCACACTGTGAC
*
68903902 CGAAGCTATC
1 CAAAGCTATC
68903912 GAGTACACAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 2 0.04
50 49 0.96
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (50 bp):
CAAAGCTATCTTTTACACAAAGTGGCCTGCACATAGCACCACACTGTGAC
Found at i:68903990 original size:50 final size:52
Alignment explanation
Indices: 68903913--68904049 Score: 165
Period size: 52 Copynumber: 2.7 Consensus size: 52
68903903 GAAGCTATCG
68903913 AGTACACATAGTAG-CTGCACTTAGTACTACACATGCGACCT-AACCA-TCT
1 AGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATTCT
* * * *
68903962 AGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTT
1 AGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAACCATTCT
* * * *
68904015 AAT-CACATAGTAGCCTACACATAGTACTAAACATG
1 AGTACACATAGTAGCCTGCACTTAGTACTACACATG
68904050 TGTTCTCACA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
49 13 0.18
50 25 0.34
52 32 0.43
53 4 0.05
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (52 bp):
AGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATTCT
Found at i:68905430 original size:47 final size:47
Alignment explanation
Indices: 68905369--68905483 Score: 113
Period size: 47 Copynumber: 2.4 Consensus size: 47
68905359 AGCTCTATTG
* * ** * * * *
68905369 AGCTTAAACGGTAAGCTCTGACGAGCTGAAAATAGTAAGCTTTTACA
1 AGCTAAAACAGTAAGCTCCAACGACCTGAAAACAATAAGCTCTTACA
**
68905416 AGCTAAAACAGTAAGCTCCAACGACCTGAAAACAATAAGCTCTTATG
1 AGCTAAAACAGTAAGCTCCAACGACCTGAAAACAATAAGCTCTTACA
68905463 AGCTGAAATATCAGTAAGCTC
1 AGCT-AAA-A-CAGTAAGCTC
68905484 ATTCGAGCTG
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
47 41 0.75
48 3 0.05
49 1 0.02
50 10 0.18
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (47 bp):
AGCTAAAACAGTAAGCTCCAACGACCTGAAAACAATAAGCTCTTACA
Found at i:68905468 original size:24 final size:24
Alignment explanation
Indices: 68905353--68905493 Score: 110
Period size: 24 Copynumber: 5.9 Consensus size: 24
68905343 TGAGCTAATG
* *
68905353 ACAGTAAGCTC-TATTGAGCT-TAA
1 ACAGTAAGCTCTTA-CGAGCTGAAA
* *
68905376 ACGGTAAGCTCTGACGAGCTGAAA
1 ACAGTAAGCTCTTACGAGCTGAAA
* * *
68905400 ATAGTAAGCTTTTACAAGCT-AAA
1 ACAGTAAGCTCTTACGAGCTGAAA
** *
68905423 ACAGTAAGCTCCAACGACCTGAAA
1 ACAGTAAGCTCTTACGAGCTGAAA
* *
68905447 ACAATAAGCTCTTATGAGCTGAAA
1 ACAGTAAGCTCTTACGAGCTGAAA
68905471 TATCAGTAAGCTCATT-CGAGCTG
1 -A-CAGTAAGCTC-TTACGAGCTG
68905494 TGGTGAGTCC
Statistics
Matches: 90, Mismatches: 22, Indels: 9
0.74 0.18 0.07
Matches are distributed among these distances:
23 32 0.36
24 40 0.44
25 1 0.01
26 15 0.17
27 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (24 bp):
ACAGTAAGCTCTTACGAGCTGAAA
Found at i:68906044 original size:37 final size:37
Alignment explanation
Indices: 68905970--68906045 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
68905960 TTAGCCGAAT
* * **
68905970 TTTCATGGAGTCCTTAGCAGCCCATGTCTTTTTTTTA
1 TTTCATGGAGTCCCTAGCAGCCCATATCTTTAATTTA
68906007 TTTCATGGAGTCCCTAGCAGCCCATATCTTTAATTTA
1 TTTCATGGAGTCCCTAGCAGCCCATATCTTTAATTTA
68906044 TT
1 TT
68906046 CACACCTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.43
Consensus pattern (37 bp):
TTTCATGGAGTCCCTAGCAGCCCATATCTTTAATTTA
Found at i:68912012 original size:47 final size:47
Alignment explanation
Indices: 68911948--68912158 Score: 262
Period size: 47 Copynumber: 4.7 Consensus size: 47
68911938 TTAACATGTA
68911948 TAACCGTGG-ATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
68911994 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-GTGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
68912032 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
68912079 TAACCGTGCCATATCCACCTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
68912127 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
68912159 CACATATAAC
Statistics
Matches: 140, Mismatches: 14, Indels: 20
0.80 0.08 0.11
Matches are distributed among these distances:
38 28 0.20
39 2 0.01
40 2 0.01
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 2 0.01
46 11 0.08
47 48 0.34
48 41 0.29
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:68912102 original size:85 final size:84
Alignment explanation
Indices: 68911948--68912111 Score: 301
Period size: 85 Copynumber: 1.9 Consensus size: 84
68911938 TTAACATGTA
* *
68911948 TAACCGTGGATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACT
1 TAACCGTGGATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGCCATATCCACC
68912013 TAGCACCACGTTACGTGTT
66 TAGCACCACGTTACGTGTT
68912032 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGCCATATCCAC
1 TAACCGTGG-ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGCCATATCCAC
68912097 CTAGCACCACGTTAC
65 CTAGCACCACGTTAC
68912112 ATGTATCAAT
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
84 9 0.12
85 68 0.88
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (84 bp):
TAACCGTGGATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGCCATATCCACC
TAGCACCACGTTACGTGTT
Found at i:68912141 original size:48 final size:48
Alignment explanation
Indices: 68912032--68912160 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 48
68912022 GTTACGTGTT
68912032 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
** * * *
68912079 TAACCGTGCCATATCCACCTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
*
68912127 TAATCGTGGTATATCCACTTAGCACCACGTTACA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA
68912161 CATATAACCA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 29 0.40
48 43 0.60
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:68912181 original size:133 final size:131
Alignment explanation
Indices: 68911948--68912192 Score: 373
Period size: 133 Copynumber: 1.9 Consensus size: 131
68911938 TTAACATGTA
* *
68911948 TAACCGTGGATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACT
1 TAACCGTGCATATCCACCTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACT
*** * *
68912013 TAGCACCACGTTACGTGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATAT
66 TAGCACCACGTTACACATATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATAT
68912078 G
131 G
* * * *
68912079 TAACCGTGCCATATCCACCTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTG-CATATCCACCTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
68912144 CTTAGCACCACGTTACACATATAACCATGGTATATCCACTTAGCACCAC
64 CTTAGCACCACGTTACACATATAACCATGGTATATCCACTTAGCACCAC
68912193 TTTTTTTTTA
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
131 8 0.08
132 21 0.21
133 72 0.71
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (131 bp):
TAACCGTGCATATCCACCTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACT
TAGCACCACGTTACACATATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATAT
G
Found at i:68914951 original size:15 final size:15
Alignment explanation
Indices: 68914912--68914953 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
68914902 GAAGCCCAGA
*
68914912 ATAAGGAAAGCCAAG
1 ATAAGGAAATCCAAG
* *
68914927 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
68914942 ATAAGGAAATCC
1 ATAAGGAAATCC
68914954 CATTTACAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.52, C:0.14, G:0.19, T:0.14
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:68916711 original size:27 final size:27
Alignment explanation
Indices: 68916681--68916875 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
68916671 ATTGGAAAAG
68916681 TTACCAAAATACCCCTGTAGGGTAGAA
1 TTACCAAAATACCCCTGTAGGGTAGAA
* * * *
68916708 TTACTAAAATACCTCTATAAGGTAGAA
1 TTACCAAAATACCCCTGTAGGGTAGAA
*
68916735 TTACCAGAATACCCCTGTAGGGTAGAA
1 TTACCAAAATACCCCTGTAGGGTAGAA
*
68916762 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACCAAAATACCCCTGTAGGGTAGAA
* *
68916789 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACCAAAATACCCCTGTAGGGTAGAA
* *** **
68916816 ATATTGAAATACCCCTGTATTGTAGAA
1 TTACCAAAATACCCCTGTAGGGTAGAA
* * * *
68916843 TTACCGAGATA-CCCTAGTGGGGTAAAA
1 TTACCAAAATACCCCT-GTAGGGTAGAA
68916870 TTACCA
1 TTACCA
68916876 TTTTGCCCAT
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 4 0.03
27 134 0.97
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
TTACCAAAATACCCCTGTAGGGTAGAA
Found at i:68916717 original size:54 final size:55
Alignment explanation
Indices: 68916652--68916829 Score: 195
Period size: 54 Copynumber: 3.3 Consensus size: 55
68916642 TAGTTTACCA
* *
68916652 AATTACCAAAATACCCTCGAT-TGG-AAAAGTTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTCGATAAGGTAAAA-TTACCAAAATACCCCTGTAGGGTAG
* * *
68916706 AATTACTAAAATA-CCTCTATAAGGTAGAATTACCAGAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTCGATAAGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* * * *
68916760 AATTACTAAAATACCC-CTG-TAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTC-GATAAGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* * *
68916814 AAATATTGAAATACCC
1 AATTACTAAAATACCC
68916830 CTGTATTGTA
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
53 6 0.06
54 96 0.90
55 5 0.05
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (55 bp):
AATTACTAAAATACCCTCGATAAGGTAAAATTACCAAAATACCCCTGTAGGGTAG
Found at i:68917643 original size:27 final size:26
Alignment explanation
Indices: 68917591--68917649 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
68917581 CCACATATAT
*
68917591 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
68917617 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
68917644 ATATCT
1 ATATCT
68917650 AGTAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:68920831 original size:38 final size:38
Alignment explanation
Indices: 68920788--68921031 Score: 177
Period size: 38 Copynumber: 5.9 Consensus size: 38
68920778 TTTCAAATTA
68920788 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
* *
68920826 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACG-T--T
* *
68920867 GAATCAATATATGTAACCATGGCATATCCGCTTAGCACCACGTT
1 --A-C-ATGTA--TAACCATGGCATATCCACTTAGCACCACGTT
* * * *
68920911 ACGTGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
* * *
68920949 ACTTGTATCAA-TATGTGTAATCGTGGTATATCCACTTAGTACCACGTT
1 ACATGTAT-AACCATG-G----C-----ATATCCACTTAGCACCACGTT
*
68920997 ACATGTATAA-CAGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCA-TGGCATATCCACTTAGCACCAC
68921032 TTTTTTTTTC
Statistics
Matches: 163, Mismatches: 22, Indels: 42
0.72 0.10 0.19
Matches are distributed among these distances:
38 87 0.53
39 4 0.02
40 2 0.01
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 1 0.01
47 31 0.19
48 29 0.18
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
Found at i:68920891 original size:85 final size:86
Alignment explanation
Indices: 68920795--68921031 Score: 352
Period size: 85 Copynumber: 2.8 Consensus size: 86
68920785 TTAACATGTA
68920795 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
68920860 CGTTA-ATGAATCAATATATG
66 CGTTACATGAATCAATATATG
* * *
68920880 TAACCATGGCATATCCGCTTAGCACCACGTTACGTGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
* * *
68920945 CGTTACTTGTATCAATATGTG
66 CGTTACATGAATCAATATATG
* * * * *
68920966 TAATCGTGGTATATCCACTTAGTACCACGTTACATGTATAA-CAGTGGTATATCCACTTAGCACC
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCA-TGGTATATCCACTTAGCACC
68921030 AC
65 AC
68921032 TTTTTTTTTC
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
85 68 0.50
86 68 0.50
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (86 bp):
TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
CGTTACATGAATCAATATATG
Found at i:68921013 original size:86 final size:85
Alignment explanation
Indices: 68920795--68921031 Score: 350
Period size: 86 Copynumber: 2.8 Consensus size: 85
68920785 TTAACATGTA
68920795 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCA-TGGTATATCCACTTAGCACC
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAA-CAGTGGTATATCCACTTAGCACC
68920859 ACGTTAATGAATCAATATATG
65 ACGTTAATGAATCAATATATG
* * *
68920880 TAACCATGGCATATCCGCTTAGCACCACGTTACGTGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACAGTGGTATATCCACTTAGCACCA
* * *
68920945 CGTTACTTGTATCAATATGTG
66 CGTTA-ATGAATCAATATATG
* * * * *
68920966 TAATCGTGGTATATCCACTTAGTACCACGTTACATGTATAACAGTGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACAGTGGTATATCCACTTAGCACCA
68921031 C
66 C
68921032 TTTTTTTTTC
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
84 1 0.01
85 65 0.48
86 70 0.51
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACAGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:68934072 original size:55 final size:55
Alignment explanation
Indices: 68934011--68934119 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 55
68934001 AATTGACAGG
** *
68934011 TTTGCCCATGGTTTCAAAGCACAGGCGTGTCG-CACGCCCGTGTTATTTTGGTAGT
1 TTTGCCCACAGTTTCAAAGCACAGGCGTGTCGAC-CACCCGTGTTATTTTGGTAGT
* * *
68934066 TTTGCCCACAGTTTCAAGGCACCGGCGTGTCGACCACCCGTGTTGTTTTGGTAG
1 TTTGCCCACAGTTTCAAAGCACAGGCGTGTCGACCACCCGTGTTATTTTGGTAG
68934120 GTTCGCCCGC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 46 0.98
56 1 0.02
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.31
Consensus pattern (55 bp):
TTTGCCCACAGTTTCAAAGCACAGGCGTGTCGACCACCCGTGTTATTTTGGTAGT
Found at i:68938748 original size:40 final size:40
Alignment explanation
Indices: 68938600--68938811 Score: 234
Period size: 40 Copynumber: 5.3 Consensus size: 40
68938590 CATTTGAATG
* * *
68938600 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * * *
68938640 TTATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
68938680 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
68938720 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * ** *
68938760 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
68938800 ATATCC-GGCTAA
1 ATATCCGGGCTAA
68938812 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 9 0.06
40 140 0.91
41 5 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:68941377 original size:10 final size:10
Alignment explanation
Indices: 68941362--68941387 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
68941352 CCAAAACTCC
68941362 TGAAGGAACT
1 TGAAGGAACT
68941372 TGAAGGAACT
1 TGAAGGAACT
68941382 TGAAGG
1 TGAAGG
68941388 GGGATCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.08, G:0.35, T:0.19
Consensus pattern (10 bp):
TGAAGGAACT
Found at i:68942627 original size:27 final size:27
Alignment explanation
Indices: 68942597--68942698 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
68942587 AATCTCATGT
* *
68942597 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
68942624 CTGTAGGATAG-A--A-TGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
68942647 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
68942674 CTGTAGGGTACAATTACTGAAATAC
1 CTGTAGGGTAGAATTACTGAAATAC
68942699 ACTCGATTAG
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
23 20 0.30
24 2 0.03
26 2 0.03
27 42 0.64
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:68942644 original size:23 final size:23
Alignment explanation
Indices: 68942614--68942660 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
68942604 CTAGTATTAC
68942614 TGAAATACCCCTGTAGGATAGAA
1 TGAAATACCCCTGTAGGATAGAA
*
68942637 TGAAATACCCCTGTAGGGTAGAA
1 TGAAATACCCCTGTAGGATAGAA
68942660 T
1 T
68942661 TACTGAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (23 bp):
TGAAATACCCCTGTAGGATAGAA
Found at i:68942729 original size:54 final size:54
Alignment explanation
Indices: 68942679--68942806 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
68942669 TGCCCCTGTA
*
68942679 GGGTACAATTA-CTGAAATACACTCGATTAGCAAAATTACCAAAATACCCCTAAT
1 GGGTAAAATTATC-GAAATACACTCGATTAGCAAAATTACCAAAATACCCCTAAT
*** * * * *
68942733 TTTTAAAATTATCGAAATACCCTCGATTAGCAAAATTACCAAAACACCCTTGAT
1 GGGTAAAATTATCGAAATACACTCGATTAGCAAAATTACCAAAATACCCCTAAT
** *
68942787 TTGTGAAATTATCGAAATAC
1 GGGTAAAATTATCGAAATAC
68942807 CCTAAACTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (54 bp):
GGGTAAAATTATCGAAATACACTCGATTAGCAAAATTACCAAAATACCCCTAAT
Found at i:68942781 original size:27 final size:27
Alignment explanation
Indices: 68942693--68942787 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 27
68942683 ACAATTACTG
*
68942693 AAATACACTCGATTAGCAAAATTACCA
1 AAATACCCTCGATTAGCAAAATTACCA
* *** * *
68942720 AAATACCC-CTAATTTTTAAAATTATCG
1 AAATACCCTC-GATTAGCAAAATTACCA
68942747 AAATACCCTCGATTAGCAAAATTACCA
1 AAATACCCTCGATTAGCAAAATTACCA
* *
68942774 AAACACCCTTGATT
1 AAATACCCTCGATT
68942788 TGTGAAATTA
Statistics
Matches: 51, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATACCCTCGATTAGCAAAATTACCA
Found at i:68942795 original size:27 final size:27
Alignment explanation
Indices: 68942710--68943217 Score: 160
Period size: 27 Copynumber: 18.8 Consensus size: 27
68942700 CTCGATTAGC
* * *
68942710 AAAATTACCAAAATACCCCTAATTTTT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * * *
68942737 AAAATTATCGAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCTTGATTTGT
*
68942764 AAAATTACCAAAACACCCTTGATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * ** *
68942791 GAAATTATCGAAATACCCTAAACTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
** ** *
68942818 AAAATTACTGAAATACCCTCAACTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
*** ** **
68942845 AAAATTACTTGAATACCCTCAACCTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * ** **
68942872 AAAATTATCGAAATACCCTCAACCTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * * ***
68942899 AAAACTACCGAAATACCATCGACCAGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * ***
68942926 AAAATTATCGAAATACCCTCGCCCTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * * *
68942953 AAAATTATCGAAATTCCCTCGACTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
*** * *
68942980 AAAATTATTGAAATACCCTCGACTTG-
1 AAAATTACCAAAATACCCTTGATTTGT
* ** *
68943006 AAAACTTACCGAAATACTATCGATTTGT
1 AAAA-TTACCAAAATACCCTTGATTTGT
* * * *
68943034 AAAGTTACCGAAATACCCTTAATTTGA
1 AAAATTACCAAAATACCCTTGATTTGT
** * * *
68943061 AAAATTACTGAAATACTCTTAATTTGG
1 AAAATTACCAAAATACCCTTGATTTGT
* * **
68943088 AAAATTA-TAGAAATACCCCTGATTTAC
1 AAAATTACCA-AAATACCCTTGATTTGT
**
68943115 AAAATTA-CAGAAATACCCTTGACTTTCA
1 AAAATTACCA-AAATACCCTTGA-TTTGT
* * *
68943143 AAAATTA-TAGAAATACCATTGGTTTGT
1 AAAATTACCA-AAATACCCTTGATTTGT
* * * * *
68943170 AAAATTAACGAAACACCCTTGGTTCGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * *
68943197 AGATTTACCAATACACCCTTG
1 AAAATTACCAAAATACCCTTG
68943218 TAGGGTGAAA
Statistics
Matches: 389, Mismatches: 87, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
26 5 0.01
27 359 0.92
28 25 0.06
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTGT
Found at i:68942807 original size:54 final size:54
Alignment explanation
Indices: 68942692--68942809 Score: 182
Period size: 54 Copynumber: 2.2 Consensus size: 54
68942682 TACAATTACT
* * *
68942692 GAAATACACTCGATTAGCAAAATTACCAAAATACCCCTAATTTTTAAAATTATC
1 GAAATACCCTCGATTAGCAAAATTACCAAAACACCCCTAATTTGTAAAATTATC
* * *
68942746 GAAATACCCTCGATTAGCAAAATTACCAAAACACCCTTGATTTGTGAAATTATC
1 GAAATACCCTCGATTAGCAAAATTACCAAAACACCCCTAATTTGTAAAATTATC
68942800 GAAATACCCT
1 GAAATACCCT
68942810 AAACTTGTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (54 bp):
GAAATACCCTCGATTAGCAAAATTACCAAAACACCCCTAATTTGTAAAATTATC
Found at i:68942822 original size:54 final size:54
Alignment explanation
Indices: 68942710--68943133 Score: 239
Period size: 54 Copynumber: 7.9 Consensus size: 54
68942700 CTCGATTAGC
* * * *
68942710 AAAATTACCAAAATACCCCTAATTTTTAAAATTATCGAAATACCCTCGA-TTAGC
1 AAAATTACCAAAATACCCTTAATTTGTAAAATTATCGAAATACCCTCAACTT-GT
* * * *
68942764 AAAATTACCAAAACACCCTTGATTTGTGAAATTATCGAAATACCCTAAACTTGT
1 AAAATTACCAAAATACCCTTAATTTGTAAAATTATCGAAATACCCTCAACTTGT
** * * * *
68942818 AAAATTACTGAAATACCCTCAACTTGTAAAATTACTTG-AATACCCTCAACCTGT
1 AAAATTACCAAAATACCCTTAATTTGTAAAATTA-TCGAAATACCCTCAACTTGT
* * * ** * * * * **
68942872 AAAATTATCGAAATACCCTCAACCTGTAAAACTACCGAAATACCATCGACCAGT
1 AAAATTACCAAAATACCCTTAATTTGTAAAATTATCGAAATACCCTCAACTTGT
* * ***** * *
68942926 AAAATTATCGAAATACCCTCGCCCTGTAAAATTATCGAAATTCCCTCGACTTGT
1 AAAATTACCAAAATACCCTTAATTTGTAAAATTATCGAAATACCCTCAACTTGT
*** ** * * ** * *
68942980 AAAATTATTGAAATACCCTCGACTTG-AAAACTTACCGAAATACTATCGATTTGT
1 AAAATTACCAAAATACCCTTAATTTGTAAAA-TTATCGAAATACCCTCAACTTGT
* * * * * * *
68943034 AAAGTTACCGAAATACCCTTAATTTGAAAAATTA-CTGAAATACTCTTAATTTGG
1 AAAATTACCAAAATACCCTTAATTTGTAAAATTATC-GAAATACCCTCAACTTGT
* * * **
68943088 AAAATTA-TAGAAATACCCCTGATTTACAAAATTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCTTAATTTGTAAAATTATC-GAAATACCCT
68943134 TGACTTTCAA
Statistics
Matches: 301, Mismatches: 62, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
53 6 0.02
54 287 0.95
55 8 0.03
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTAATTTGTAAAATTATCGAAATACCCTCAACTTGT
Found at i:68942849 original size:81 final size:81
Alignment explanation
Indices: 68942710--68943076 Score: 339
Period size: 81 Copynumber: 4.5 Consensus size: 81
68942700 CTCGATTAGC
* * * * *
68942710 AAAATTACCAAAATACCC-CTAATTTTTAAAATTA-TCGAAATACCCTCGA-TTAGCAAAATTAC
1 AAAATTATCGAAATACCCTC-AACTTGTAAAATTACT-GAAATACCCTCGACTT-GTAAAATTAC
* * * **
68942772 CAAAACACCCTTGATTTGT
63 CGAAATACCCTCGACCTGT
* * * *
68942791 GAAATTATCGAAATACCCTAAACTTGTAAAATTACTGAAATACCCTCAACTTGTAAAATTACTTG
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CG
*
68942856 -AATACCCTCAACCTGT
65 AAATACCCTCGACCTGT
* * * * ** *
68942872 AAAATTATCGAAATACCCTCAACCTGTAAAACTACCGAAATACCATCGACCAGTAAAATTATCGA
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCGA
*
68942937 AATACCCTCGCCCTGT
66 AATACCCTCGACCTGT
* * *
68942953 AAAATTATCGAAATTCCCTCGACTTGTAAAATTATTGAAATACCCTCGACTTG-AAAACTTACCG
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACTGAAATACCCTCGACTTGTAAAA-TTACCG
** **
68943017 AAATACTATCGATTTGT
65 AAATACCCTCGACCTGT
* * * * *
68943034 AAAGTTACCGAAATACCCTTAATTTGAAAAATTACTGAAATAC
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACTGAAATAC
68943077 TCTTAATTTG
Statistics
Matches: 229, Mismatches: 51, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
80 5 0.02
81 221 0.97
82 3 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (81 bp):
AAAATTATCGAAATACCCTCAACTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCGA
AATACCCTCGACCTGT
Found at i:68943174 original size:55 final size:55
Alignment explanation
Indices: 68943055--68943190 Score: 143
Period size: 55 Copynumber: 2.5 Consensus size: 55
68943045 AATACCCTTA
* * ** *
68943055 ATTTGAAAAATTACTGAAATACTCTT-AATTTGGAAAATTATAGAAATACCCCTG
1 ATTTGAAAAATTACAGAAATACCCTTGAATTTCAAAAATTATAGAAATACCACTG
* *
68943109 ATTT-ACAAAATTACAGAAATACCCTTGACTTTCAAAAATTATAGAAATACCATTG
1 ATTTGA-AAAATTACAGAAATACCCTTGAATTTCAAAAATTATAGAAATACCACTG
* * *
68943164 GTTTGTAAAATTA-ACGAAACACCCTTG
1 ATTTGAAAAATTACA-GAAATACCCTTG
68943191 GTTCGTAGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
53 1 0.01
54 23 0.34
55 44 0.65
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (55 bp):
ATTTGAAAAATTACAGAAATACCCTTGAATTTCAAAAATTATAGAAATACCACTG
Found at i:68943731 original size:22 final size:22
Alignment explanation
Indices: 68943677--68943742 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
68943667 AGTCAATTAT
*
68943677 CCTGATTATGGCTTTGTGCCAA
1 CCTGATTATGGCTCTGTGCCAA
**
68943699 CCT-ACACATGGCTCTGTGCCAA
1 CCTGA-TTATGGCTCTGTGCCAA
*
68943721 CCTGATTATGGCTGTGTGCCAA
1 CCTGATTATGGCTCTGTGCCAA
68943743 ACGTATTTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (22 bp):
CCTGATTATGGCTCTGTGCCAA
Found at i:68944735 original size:109 final size:107
Alignment explanation
Indices: 68944470--68944746 Score: 288
Period size: 109 Copynumber: 2.6 Consensus size: 107
68944460 AGAATTACTG
* * *
68944470 AAATACCCTCGATTAGCAAAATTACCAAAATATCCTTGATTTGTG-AAATTATCGAAATACCCTC
1 AAATA-CCTCGATTAGTAAAATTACCAAAATACCCTTGATTTG-GAAAATTATCAAAATACCCTC
68944534 AACTAGTAAAATTACTGAAATACCCTCGACTTGTAAAACTACCA
64 AACTAGTAAAATTACTGAAATACCCTCGACTTGTAAAACTACCA
** * * * *** * *
68944578 AAATACCATCGACCAGTAAAATTATCGAAATACCCTCGCCCTGTAAAATTTATCAAAATTCCCTC
1 AAATACC-TCGATTAGTAAAATTACCAAAATACCCTTGATTTGGAAAA-TTATCAAAATACCCTC
* * * *
68944643 GACTTGTAAAATTA-TCGAAATACCCTTGACTTGTAAAATTACCA
64 AACTAGTAAAATTACT-GAAATACCCTCGACTTGTAAAACTACCA
* * * * *
68944687 AAATACTCTCGATTTGTAAAGTTACCTAAATACCCTTAATTTGGAAAATTACCAAAATAC
1 AAATAC-CTCGATTAGTAAAATTACCAAAATACCCTTGATTTGGAAAATTATCAAAATAC
68944747 ACTTAATTTG
Statistics
Matches: 133, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
107 2 0.02
108 44 0.33
109 86 0.65
110 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (107 bp):
AAATACCTCGATTAGTAAAATTACCAAAATACCCTTGATTTGGAAAATTATCAAAATACCCTCAA
CTAGTAAAATTACTGAAATACCCTCGACTTGTAAAACTACCA
Found at i:68944863 original size:27 final size:27
Alignment explanation
Indices: 68944462--68944860 Score: 258
Period size: 27 Copynumber: 14.7 Consensus size: 27
68944452 TGAAGGGTAG
* * * *
68944462 AATTACTGAAATACCCTCGATTAGCAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
68944489 AATTACCAAAATATCCTTGATTTGTGA
1 AATTACCGAAATACCCTTGATTTGTAA
* ** * *
68944516 AATTATCGAAATACCCTCAACTAGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
68944543 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * * ***
68944570 AACTACCAAAATACCATCGACCAGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * ***
68944597 AATTATCGAAATACCCTCGCCCTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * * *
68944624 AATTTATCAAAATTCCCTCGACTTGTAA
1 AA-TTACCGAAATACCCTTGATTTGTAA
* *
68944652 AATTATCGAAATACCCTTGACTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
68944679 AATTACCAAAATACTCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * *
68944706 AGTTACCTAAATACCCTTAATTTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * *
68944733 AATTACCAAAATACACTTAATTTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
** * * **
68944760 AATTATAGAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* **
68944787 AATTACAGAAATACCCTTGACTTTCAAA
1 AATTACCGAAATACCCTTGA-TTTGTAA
* * *
68944815 AATTACAGAAATACCATTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
*
68944842 AATTACCGAAACACCCTTG
1 AATTACCGAAATACCCTTG
68944861 GTTCGTAGAT
Statistics
Matches: 299, Mismatches: 71, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
27 253 0.85
28 46 0.15
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:68944874 original size:27 final size:27
Alignment explanation
Indices: 68944813--68944887 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
68944803 TTGACTTTCA
* * * *
68944813 AAAATTACAGAAATACCATTGGTTTGT
1 AAAATTACCGAAACACCCTTGGTTCGT
68944840 AAAATTACCGAAACACCCTTGGTTCGT
1 AAAATTACCGAAACACCCTTGGTTCGT
* *
68944867 AGATTTACC-AATACACCCTTG
1 AAAATTACCGAA-ACACCCTTG
68944888 TAGGGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAACACCCTTGGTTCGT
Found at i:68945401 original size:22 final size:22
Alignment explanation
Indices: 68945347--68945412 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
68945337 AGTCAATTAT
*
68945347 CCTGATTATGGCTTTGTGCCAA
1 CCTGATTATGGCTCTGTGCCAA
**
68945369 CCT-ACACATGGCTCTGTGCCAA
1 CCTGA-TTATGGCTCTGTGCCAA
* *
68945391 CCTGATTATGGTTGTGTGCCAA
1 CCTGATTATGGCTCTGTGCCAA
68945413 ACGTATTTAC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (22 bp):
CCTGATTATGGCTCTGTGCCAA
Found at i:68948106 original size:9 final size:10
Alignment explanation
Indices: 68948072--68948106 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
68948062 TAGGTTGCTT
68948072 TGGGCCATGA
1 TGGGCCATGA
*
68948082 TGGGCCAGGA
1 TGGGCCATGA
68948092 TGGGCCATG-
1 TGGGCCATGA
68948101 TGGGCC
1 TGGGCC
68948107 TAATGGACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.26
10 17 0.74
ACGTcount: A:0.14, C:0.23, G:0.46, T:0.17
Consensus pattern (10 bp):
TGGGCCATGA
Found at i:68948310 original size:54 final size:52
Alignment explanation
Indices: 68948245--68948649 Score: 242
Period size: 54 Copynumber: 7.5 Consensus size: 52
68948235 TGTAGGGTAG
* * * *
68948245 AATTACTGAAATGCCCCTGATTTCTAAAATTATCGAAATACCCCTGGTTTGTAA
1 AATTACCGAAAT-ACCCTGATTTGTAAAATTA-CGAAATACCCCTGATTTGTAA
* * *
68948299 AATTACCGAAATACCCTCGACTTGTAAAATTACTGAAATA-CCCTCAACTTGTAA
1 AATTACCGAAATACCCT-GATTTGTAAAATTAC-GAAATACCCCT-GATTTGTAA
* * * * **
68948353 AATAACCGAAATACCCTGAACTTGTAAAATTACTAAAATA-CCCTCAACCTGTAA
1 AATTACCGAAATACCCTG-ATTTGTAAAATTAC-GAAATACCCCT-GATTTGTAA
* ** * *
68948407 AATTATCGAAATACCCTCGACCTGTAAAATTATCGAAATA-CCCTCAACTTGTAA
1 AATTACCGAAATACCCT-GATTTGTAAAATTA-CGAAATACCCCT-GATTTGTAA
** * * * * *
68948461 AATTATTGAAATACCCTCAATTTGTATAGTTACCAAAATACCCCTGATTTGGAA
1 AATTACCGAAATACCCT-GATTTGTAAAATTA-CGAAATACCCCTGATTTGTAA
* * **
68948515 AATTACCGAAATACCATTGATTTAG-AAAATTACAAAAATACCCCTGATTTACAA
1 AATTACCGAAATACC-CTGATTT-GTAAAATTAC-GAAATACCCCTGATTTGTAA
** ** * ** * *
68948569 AATTACAAAAATACCCTTGACTTTCAAAAATTATTGAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCC-TGA-TTTGTAAAATTA-CGAAATACCCCTGATTTGTAA
* *
68948624 AATTACCGAAACACCCTTGGTTTGTA
1 AATTACCGAAATACCC-TGATTTGTA
68948650 GATTTACCAA
Statistics
Matches: 287, Mismatches: 50, Indels: 28
0.79 0.14 0.08
Matches are distributed among these distances:
53 11 0.04
54 227 0.79
55 49 0.17
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (52 bp):
AATTACCGAAATACCCTGATTTGTAAAATTACGAAATACCCCTGATTTGTAA
Found at i:68948333 original size:81 final size:80
Alignment explanation
Indices: 68948245--68948557 Score: 256
Period size: 81 Copynumber: 3.9 Consensus size: 80
68948235 TGTAGGGTAG
* *
68948245 AATTACTGAAATGCCCCTGATTTCTAAAATTATCGAAATACCCCTGGTTTGTAAAATTACCGAAA
1 AATTACTGAAAT-CCCCTGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTACCGAAA
*
68948310 TACCCTCGACTTGTAA
65 TACCCTCAACTTGTAA
* * * * * * **
68948326 AATTACTGAAATACCCTCAACTTGTAAAATAACCGAAATA-CCCTGAACTTGTAAAATTACTAAA
1 AATTACTGAAATCCCCT-GATTTGTAAAATTATCGAAATACCCCTG-ATTTGTAAAATTACCGAA
*
68948390 ATACCCTCAACCTGTAA
64 ATACCCTCAACTTGTAA
* ** * * **
68948407 AATTA-TCGAAATACCCTCGACCTGTAAAATTATCGAAATA-CCCTCAACTTGTAAAATTATTGA
1 AATTACT-GAAATCCCCT-GATTTGTAAAATTATCGAAATACCCCT-GATTTGTAAAATTACCGA
* *
68948470 AATACCCTCAATTTGTAT
63 AATACCCTCAACTTGTAA
* ** * * ** **
68948488 AGTTACCAAAATACCCCTGATTTGGAAAATTACCGAAATACCATTGATTTAG-AAAATTACAAAA
1 AATTACTGAAAT-CCCCTGATTTGTAAAATTATCGAAATACCCCTGATTT-GTAAAATTACCGAA
68948552 ATACCC
64 ATACCC
68948558 CTGATTTACA
Statistics
Matches: 187, Mismatches: 37, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
80 10 0.05
81 170 0.91
82 7 0.04
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (80 bp):
AATTACTGAAATCCCCTGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTACCGAAAT
ACCCTCAACTTGTAA
Found at i:68948634 original size:27 final size:27
Alignment explanation
Indices: 68948253--68948647 Score: 150
Period size: 27 Copynumber: 14.6 Consensus size: 27
68948243 AGAATTACTG
* * * *
68948253 AAATGCCCCTGATTT-CTAAAATTATCG
1 AAATACCCTTGATTTGC-AAAATTACCA
* * * *
68948280 AAATACCCCTGGTTTGTAAAATTACCG
1 AAATACCCTTGATTTGCAAAATTACCA
* * * **
68948307 AAATACCCTCGACTTGTAAAATTACTG
1 AAATACCCTTGATTTGCAAAATTACCA
** * * * *
68948334 AAATACCCTCAACTTGTAAAATAACCG
1 AAATACCCTTGATTTGCAAAATTACCA
* * *
68948361 AAATACCC-TGAACTTGTAAAATTACTA
1 AAATACCCTTG-ATTTGCAAAATTACCA
** ** * * *
68948388 AAATACCCTCAACCTGTAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTACCA
* ** * * *
68948415 AAATACCCTCGACCTGTAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTACCA
** * * ***
68948442 AAATACCCTCAACTTGTAAAATTATTG
1 AAATACCCTTGATTTGCAAAATTACCA
** * * *
68948469 AAATACCCTCAATTTGTATAGTTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *
68948496 AAATACCCCTGATTTGGAAAATTACCG
1 AAATACCCTTGATTTGCAAAATTACCA
* *
68948523 AAATACCATTGATTTAG-AAAATTACAA
1 AAATACCCTTGATTT-GCAAAATTACCA
* * *
68948550 AAATACCCCTGATTTACAAAATTACAA
1 AAATACCCTTGATTTGCAAAATTACCA
***
68948577 AAATACCCTTGACTTT-CAAAAATTATTG
1 AAATACCCTTGA-TTTGC-AAAATTACCA
* * *
68948605 AAATACCATTGGTTTGCAAAATTACCG
1 AAATACCCTTGATTTGCAAAATTACCA
* *
68948632 AAACACCCTTGGTTTG
1 AAATACCCTTGATTTG
68948648 TAGATTTACC
Statistics
Matches: 303, Mismatches: 57, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
27 281 0.93
28 22 0.07
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTACCA
Found at i:68948640 original size:55 final size:54
Alignment explanation
Indices: 68948490--68948642 Score: 155
Period size: 55 Copynumber: 2.8 Consensus size: 54
68948480 ATTTGTATAG
* * * *
68948490 TTACCAAAATACCCCTGATTTGGAAAATTACCGAAATACCATTGATTTAGAAAA
1 TTACAAAAATACCACTGATTTGCAAAATTACCGAAATACCCTTGATTTAGAAAA
* * **
68948544 TTACAAAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCA-AAAA
1 TTACAAAAATACCACTGATTTGCAAAATTACCGAAATACCCTTGA-TTT-AGAAAA
*** * * *
68948599 TTATTGAAATACCATTGGTTTGCAAAATTACCGAAACACCCTTG
1 TTACAAAAATACCACTGATTTGCAAAATTACCGAAATACCCTTG
68948643 GTTTGTAGAT
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
54 39 0.48
55 41 0.51
56 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (54 bp):
TTACAAAAATACCACTGATTTGCAAAATTACCGAAATACCCTTGATTTAGAAAA
Found at i:68948994 original size:41 final size:40
Alignment explanation
Indices: 68948906--68949021 Score: 139
Period size: 41 Copynumber: 2.9 Consensus size: 40
68948896 TAGAGGAAGA
* *
68948906 AATTGAGGATCGCATGGTTCCTTGACGAC--GGATCCACT
1 AATTAAGGATCGCATGGTTGCTTGACGACGTGGATCCACT
*
68948944 AATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCA-T
1 AATTAAGGATCGCATGGTTGCTTGACGA-CGTGGATCCACT
* *
68948984 CGATTAAGGATCACATGGTTGCTTGACGACCGTGGATC
1 -AATTAAGGATCGCATGGTTGCTTGACGA-CGTGGATC
68949022 TACCGATGGC
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
38 27 0.39
39 1 0.01
40 1 0.01
41 40 0.58
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
AATTAAGGATCGCATGGTTGCTTGACGACGTGGATCCACT
Found at i:68949220 original size:22 final size:22
Alignment explanation
Indices: 68949168--68949232 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
68949158 GCCAATTATT
* *
68949168 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
68949190 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
68949212 TTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
68949233 ACGTATTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:68965111 original size:22 final size:22
Alignment explanation
Indices: 68965080--68965125 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
68965070 ATGAAAAGAA
68965080 TTATTCGACACAAGACCTAGAG
1 TTATTCGACACAAGACCTAGAG
*
68965102 TTATTTGACACAAGACCTAGAG
1 TTATTCGACACAAGACCTAGAG
68965124 TT
1 TT
68965126 GGCAGCTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (22 bp):
TTATTCGACACAAGACCTAGAG
Found at i:68984742 original size:25 final size:25
Alignment explanation
Indices: 68984708--68984833 Score: 132
Period size: 25 Copynumber: 5.1 Consensus size: 25
68984698 CACGCGATCA
*
68984708 AGCTTACCGATTCTCAGCTCATATG
1 AGCTTACCGATTCTCAGCTCGTATG
*
68984733 AGCTTACCGATT-TCAGCTCGTAAG
1 AGCTTACCGATTCTCAGCTCGTATG
* * * * *
68984757 AGCATACTGATTCTAAGCTCTTATA
1 AGCTTACCGATTCTCAGCTCGTATG
* *
68984782 AGCTTACCTATTGT-AGCTCGTGA-G
1 AGCTTACCGATTCTCAGCTCGT-ATG
*
68984806 AGCTTACTGATTCTCAGCTCGTATG
1 AGCTTACCGATTCTCAGCTCGTATG
68984831 AGC
1 AGC
68984834 ATACATGTAC
Statistics
Matches: 80, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
24 38 0.47
25 42 0.52
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (25 bp):
AGCTTACCGATTCTCAGCTCGTATG
Found at i:68984776 original size:49 final size:49
Alignment explanation
Indices: 68984716--68984833 Score: 157
Period size: 49 Copynumber: 2.4 Consensus size: 49
68984706 CAAGCTTACC
68984716 GATTCTCAGCTCATATGAGCTTACCGATT-TCAGCTCGTAAGAGCATACT
1 GATTCTCAGCTCATATGAGCTTACCGATTGT-AGCTCGTAAGAGCATACT
* * * * * *
68984765 GATTCTAAGCTCTTATAAGCTTACCTATTGTAGCTCGTGAGAGCTTACT
1 GATTCTCAGCTCATATGAGCTTACCGATTGTAGCTCGTAAGAGCATACT
*
68984814 GATTCTCAGCTCGTATGAGC
1 GATTCTCAGCTCATATGAGC
68984834 ATACATGTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 58 0.98
50 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (49 bp):
GATTCTCAGCTCATATGAGCTTACCGATTGTAGCTCGTAAGAGCATACT
Found at i:68985227 original size:30 final size:30
Alignment explanation
Indices: 68985193--68985291 Score: 80
Period size: 30 Copynumber: 3.3 Consensus size: 30
68985183 TAAATGGTAA
68985193 GTTAAATTCTATGTTATACGAACTACTAAG
1 GTTAAATTCTATGTTATACGAACTACTAAG
** * * *
68985223 GTTAAA--CATAAATTGTGACTAAATGA-TAA-
1 GTTAAATTC-TATGTTAT-ACGAACT-ACTAAG
*
68985252 GTTAAATTCTATGTTATATGAACTACTAAG
1 GTTAAATTCTATGTTATACGAACTACTAAG
*
68985282 CTTAAATTCT
1 GTTAAATTCT
68985292 TACTCGATGT
Statistics
Matches: 50, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
28 2 0.04
29 18 0.36
30 28 0.56
31 2 0.04
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (30 bp):
GTTAAATTCTATGTTATACGAACTACTAAG
Found at i:68985242 original size:59 final size:59
Alignment explanation
Indices: 68985169--68985287 Score: 202
Period size: 59 Copynumber: 2.0 Consensus size: 59
68985159 ATGTTTACTT
* *
68985169 ACATAAATTATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTACTAAGGTTAA
1 ACATAAATTATGACTAAATGATAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
* *
68985228 ACATAAATTGTGACTAAATGATAAGTTAAATTCTATGTTATATGAACTACTAAGCTTAA
1 ACATAAATTATGACTAAATGATAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
68985287 A
1 A
68985288 TTCTTACTCG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (59 bp):
ACATAAATTATGACTAAATGATAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
Found at i:68986131 original size:12 final size:12
Alignment explanation
Indices: 68986114--68986140 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
68986104 TTAGGCTGTT
68986114 ACACGGCCTAGC
1 ACACGGCCTAGC
68986126 ACACGGCCTAGC
1 ACACGGCCTAGC
68986138 ACA
1 ACA
68986141 TGGGCATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:68991639 original size:40 final size:40
Alignment explanation
Indices: 68991569--68991786 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
68991559 AAGCTAGGTA
* * * *
68991569 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
68991608 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68991648 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
68991688 CCTTCGGGGCTTAACCCAGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * **
68991728 CCTTCGGGACTTAGCCCAGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68991768 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68991787 TTATCATTCG
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 13 0.08
40 143 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68999724 original size:40 final size:40
Alignment explanation
Indices: 68999645--68999822 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
68999635 AAGCCAGGTA
* * * * *
68999645 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
68999684 CCTTTGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
68999724 CCTTCGGGGCTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
68999764 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68999804 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68999823 TTATCATCCG
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
39 12 0.10
40 106 0.90
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69006262 original size:24 final size:20
Alignment explanation
Indices: 69006213--69006251 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69006203 GATCTAAAAT
69006213 AATAATTTCATTCAATTAAC
1 AATAATTTCATTCAATTAAC
69006233 AATAATTTCATTCAATTAA
1 AATAATTTCATTCAATTAA
69006252 ATAATTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAATTTCATTCAATTAAC
Found at i:69008021 original size:39 final size:39
Alignment explanation
Indices: 69007857--69008039 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 39
69007847 TTGAATGCTG
* * * * * *
69007857 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** *
69007897 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
*
69007937 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
69007977 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
69008016 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69008040 TGAACGAGGA
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 37 0.30
40 79 0.64
41 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:69008037 original size:79 final size:81
Alignment explanation
Indices: 69007858--69008039 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 81
69007848 TGAATGCTGT
* *
69007858 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTT
*
69007922 GTGCGAGATACTAAAT
66 GTGCGAGATACTAAAA
* * * * **
69007938 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCA-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCATT
* *
69008000 TGTGTGAGTTACTAAAA
65 TGTGCGAGATACTAAAA
*
69008017 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
69008040 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 37 0.43
80 44 0.51
81 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAAA
Found at i:69008059 original size:79 final size:80
Alignment explanation
Indices: 69007858--69008074 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 80
69007848 TGAATGCTGT
* ** * * **
69007858 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGGGTTAAG-TCCCGAAGGCATT
*
69007921 TGTGCGAGATACTAAAT
64 TGTGCGAGATACTAAAA
* ** * * *
69007938 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTG
* *
69008002 TGTGAGTTACTAAAA
66 TGCGAGATACTAAAA
* * *
69008017 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGGTTAAGTCCCGAAGG
69008075 TATGTGATTT
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.14
79 48 0.42
80 44 0.39
81 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAAA
Found at i:69032442 original size:20 final size:19
Alignment explanation
Indices: 69032413--69032496 Score: 125
Period size: 19 Copynumber: 4.4 Consensus size: 19
69032403 AAATATAATT
69032413 AAAAAAAAAAAAAA-TAAA
1 AAAAAAAAAAAAAATTAAA
* *
69032431 AAAAATAAAAAAATTTAAA
1 AAAAAAAAAAAAAATTAAA
69032450 AAAAAAAAAAAAAATTTAAA
1 AAAAAAAAAAAAAA-TTAAA
*
69032470 ATAAAAAAAAAAAATTAAA
1 AAAAAAAAAAAAAATTAAA
69032489 AAAAAAAA
1 AAAAAAAA
69032497 TTTGTTTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.21
19 28 0.48
20 18 0.31
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (19 bp):
AAAAAAAAAAAAAATTAAA
Found at i:69032505 original size:57 final size:57
Alignment explanation
Indices: 69032413--69032540 Score: 161
Period size: 57 Copynumber: 2.3 Consensus size: 57
69032403 AAATATAATT
69032413 AAAAAAAAAAAAAA-TAAAAAAAATAAAAAAATTTAAAAAAAAAAAAAAAAATTTAA
1 AAAAAAAAAAAAAATTAAAAAAAATAAAAAAATTTAAAAAAAAAAAAAAAAATTTAA
**** * * *
69032469 AATAAAAAAAAAAAATTAAAAAAAA-AAATTTGTTTAAAAAAAAAAAAATAATTTTTA
1 AA-AAAAAAAAAAAATTAAAAAAAATAAAAAAATTTAAAAAAAAAAAAAAAAATTTAA
*
69032526 AAAAAAAACAAAAAT
1 AAAAAAAAAAAAAAT
69032541 CAAATATTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 14 0.23
57 39 0.63
58 9 0.15
ACGTcount: A:0.80, C:0.01, G:0.01, T:0.19
Consensus pattern (57 bp):
AAAAAAAAAAAAAATTAAAAAAAATAAAAAAATTTAAAAAAAAAAAAAAAAATTTAA
Found at i:69032509 original size:20 final size:20
Alignment explanation
Indices: 69032486--69032538 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 20
69032476 AAAAAAAATT
69032486 AAAAAAAAAAAT-TTGTTTAA
1 AAAAAAAAAAATATT-TTTAA
69032506 AAAAAAAAAAATAATTTTTAA
1 AAAAAAAAAAAT-ATTTTTAA
69032527 AAAAAAACAAAA
1 AAAAAAA-AAAA
69032539 ATCAAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.40
21 12 0.40
22 6 0.20
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAAAAAAATATTTTTAA
Found at i:69032516 original size:1 final size:1
Alignment explanation
Indices: 69032413--69032496 Score: 69
Period size: 1 Copynumber: 84.0 Consensus size: 1
69032403 AAATATAATT
* * *** *** *
69032413 AAAAAAAAAAAAAATAAAAAAAATAAAAAAATTTAAAAAAAAAAAAAAAAATTTAAAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
**
69032478 AAAAAATTAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAA
69032497 TTTGTTTAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (1 bp):
A
Found at i:69032553 original size:26 final size:22
Alignment explanation
Indices: 69032486--69032540 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
69032476 AAAAAAAATT
*
69032486 AAAAAAAAA-AATTTGTTTAAAA
1 AAAAAAAAATAATTT-TTAAAAA
69032508 AAAAAAAAATAATTTTTAAAAA
1 AAAAAAAAATAATTTTTAAAAA
69032530 AAAACAAAAAT
1 AAAA-AAAAAT
69032541 CAAATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAAAAAAATAATTTTTAAAAA
Found at i:69032560 original size:27 final size:23
Alignment explanation
Indices: 69032486--69032540 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
69032476 AAAAAAAATT
*
69032486 AAAAAAAAA-AATTTGTT-TAAAA
1 AAAAAAAAATAATTT-TTAAAAAA
69032508 AAAAAAAAATAATTTTTAAAAAA
1 AAAAAAAAATAATTTTTAAAAAA
*
69032531 AAACAAAAAT
1 AAAAAAAAAT
69032541 CAAATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAAAAAAATAATTTTTAAAAAA
Found at i:69037931 original size:28 final size:27
Alignment explanation
Indices: 69037895--69037977 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 27
69037885 GATACGAAAA
* *
69037895 TGTGACAAGTCACCAAATACAGATATTT
1 TGTGGCAAGTCACCAGA-ACAGATATTT
*
69037923 TGTGGCAAGTGCCACCAGAACAG-TAATT
1 TGTGGCAAGT--CACCAGAACAGATATTT
* *
69037951 TGTGGCAGGCCACCAGAACAGATATTT
1 TGTGGCAAGTCACCAGAACAGATATTT
69037978 GTGCATAGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 11 0.24
27 4 0.09
28 21 0.46
29 4 0.09
30 6 0.13
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TGTGGCAAGTCACCAGAACAGATATTT
Found at i:69037967 original size:26 final size:28
Alignment explanation
Indices: 69037913--69037980 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
69037903 GTCACCAAAT
69037913 ACAGATATTTTGTGGCAAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAAGTGCCACCAGA
69037942 ACAG-TAATTTGTGGC-AG-GCCACCAGA
1 ACAGAT-ATTTGTGGCAAGTGCCACCAGA
69037968 ACAGATATTTGTG
1 ACAGATATTTGTG
69037981 CATAGCCACC
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
26 20 0.54
27 3 0.08
28 9 0.24
29 5 0.14
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (28 bp):
ACAGATATTTGTGGCAAGTGCCACCAGA
Found at i:69037988 original size:26 final size:26
Alignment explanation
Indices: 69037921--69037992 Score: 85
Period size: 26 Copynumber: 2.7 Consensus size: 26
69037911 ATACAGATAT
69037921 TTTGTGGCAAGTGCCACCAGAACAGTAA
1 TTTGTGGCAA--GCCACCAGAACAGTAA
*
69037949 TTTGTGGCAGGCCACCAGAACAG-ATA
1 TTTGTGGCAAGCCACCAGAACAGTA-A
69037975 TTTGT-GCATAGCCACCAG
1 TTTGTGGCA-AGCCACCAG
69037993 GACGCTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
25 4 0.10
26 27 0.68
28 9 0.22
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (26 bp):
TTTGTGGCAAGCCACCAGAACAGTAA
Found at i:69039226 original size:13 final size:13
Alignment explanation
Indices: 69039208--69039232 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69039198 ATAGATGGAG
69039208 AGAAAGAAAGAAA
1 AGAAAGAAAGAAA
69039221 AGAAAGAAAGAA
1 AGAAAGAAAGAA
69039233 GGAAGAATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAGAAA
Found at i:69045719 original size:55 final size:56
Alignment explanation
Indices: 69045654--69045768 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
69045644 AGCATGGCTG
* *
69045654 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
** * *
69045710 CCAGA-ACAGATATTTGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
69045765 CCAG
1 CCAG
69045769 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:69045731 original size:27 final size:27
Alignment explanation
Indices: 69045679--69045768 Score: 128
Period size: 27 Copynumber: 3.2 Consensus size: 27
69045669 GTGACAGAGT
69045679 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
*
69045708 CACCAGAACAGATATTTGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
69045735 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
69045763 CACCAG
1 CACCAG
69045769 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
27 25 0.44
28 25 0.44
29 7 0.12
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:69045927 original size:28 final size:27
Alignment explanation
Indices: 69045874--69045937 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 27
69045864 AAATTAACCC
*
69045874 TAGGGGTATAAGGTCATTTTGCATACA
1 TAGGGGTATAAGGTAATTTTGCATACA
69045901 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAA-GGTAATTTTGCATACA
69045929 TAGGGGTAT
1 TAGGGGTAT
69045938 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (27 bp):
TAGGGGTATAAGGTAATTTTGCATACA
Found at i:69048463 original size:25 final size:25
Alignment explanation
Indices: 69048435--69048517 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
69048425 GTATGTAAAT
69048435 GGGAAGCTCTTTTGAGCCATATAAC
1 GGGAAGCTCTTTTGAGCCATATAAC
* * ***
69048460 GGGAAGCTC-ATTAAGTTGTATAAC
1 GGGAAGCTCTTTTGAGCCATATAAC
** * *
69048484 GGGAAGCTCTTGCGAGCCATTTAAT
1 GGGAAGCTCTTTTGAGCCATATAAC
69048509 GGGAAGCTC
1 GGGAAGCTC
69048518 AAAAGAGCCA
Statistics
Matches: 43, Mismatches: 14, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
24 19 0.44
25 24 0.56
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (25 bp):
GGGAAGCTCTTTTGAGCCATATAAC
Found at i:69050105 original size:17 final size:18
Alignment explanation
Indices: 69050078--69050116 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
69050068 GGCTATTTCT
*
69050078 GGGCTATGTGAGCCACAC
1 GGGCTATGTGACCCACAC
*
69050096 GGGC-ATGTGACCCACAT
1 GGGCTATGTGACCCACAC
69050113 GGGC
1 GGGC
69050117 CGGAATATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.21, C:0.28, G:0.36, T:0.15
Consensus pattern (18 bp):
GGGCTATGTGACCCACAC
Found at i:69051669 original size:55 final size:54
Alignment explanation
Indices: 69051514--69051720 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
69051504 TTCCTTTTTA
* * * *
69051514 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
69051567 AACTCAACATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
69051621 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
69051676 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGTTATCCTT
1 AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
69051721 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.36
54 38 0.31
55 41 0.33
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:69056189 original size:45 final size:45
Alignment explanation
Indices: 69056083--69056390 Score: 381
Period size: 45 Copynumber: 6.9 Consensus size: 45
69056073 TTTTCTCAAA
** * * *
69056083 TCACCGGCATTTTA-CCTGCTAGGCTC-GAGGCCCGATTA-TCATT
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
69056126 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCTGAATAGTATC
1 TCACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* * *
69056171 TCACCGGCATTATTGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
69056216 TCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAATGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
69056261 TCACTGGCATAATAGCCTACTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
69056306 TCACCGGAATAATAGCCTGATAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
69056351 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCTGAATA
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
69056391 TAATACCAAC
Statistics
Matches: 234, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
43 13 0.06
44 15 0.06
45 204 0.87
46 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:69056431 original size:38 final size:38
Alignment explanation
Indices: 69056388--69056468 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
69056378 AAAGGCCTGA
* *
69056388 ATATAATACCAACACTAGGCCTGCAGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGCAGGATTTAACCCGG
* **
69056426 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGCAGGATTTAACCCGG
69056464 ATATA
1 ATATA
69056469 CATCAAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (38 bp):
ATATAATACCAACACGAAGCCTGCAGGATTTAACCCGG
Found at i:69069888 original size:40 final size:40
Alignment explanation
Indices: 69069807--69070063 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
69069797 AAACCAAGTA
* * * *
69069807 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69069846 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
69069886 CCTTCGGAATTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69069926 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69069966 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69070006 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
69070045 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69070064 TTATCATCCG
Statistics
Matches: 198, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 49 0.25
40 148 0.75
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69074915 original size:39 final size:40
Alignment explanation
Indices: 69074779--69074928 Score: 189
Period size: 39 Copynumber: 3.8 Consensus size: 40
69074769 TGGATGAAAA
* ** * *
69074779 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
69074818 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
69074858 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
69074898 CC-GGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69074929 AGTTATATCC
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
39 57 0.58
40 40 0.40
41 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:69074940 original size:79 final size:79
Alignment explanation
Indices: 69074779--69074928 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 79
69074769 TGGATGAAAA
* *
69074779 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGA
69074844 GCGAGTTACTAAAT
66 GCGAGTTACTAAAT
** * *
69074858 CCGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTCTAA-CC-GGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-ATCTGCACGAGTGA--CTAATCCGGGCTAAGTCCCGAAGGCATT
69074920 TGAGCGAGT
63 TGAGCGAGT
69074929 AGTTATATCC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 54 0.87
80 4 0.06
81 4 0.06
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACTAAAT
Found at i:69082992 original size:40 final size:39
Alignment explanation
Indices: 69082901--69083049 Score: 192
Period size: 40 Copynumber: 3.8 Consensus size: 39
69082891 TGGATGAAAA
* ** * *
69082901 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
69082940 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
69082980 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* *
69083020 CCGGGCTATGTCCCGAAGGCATTTGAGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
69083050 TAGTTATATC
Statistics
Matches: 98, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 31 0.32
40 63 0.64
41 2 0.02
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:69083990 original size:35 final size:34
Alignment explanation
Indices: 69083951--69084020 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 34
69083941 TATGTTTTCG
69083951 TGAAACAGGGCCAGAACTGTTTCTGGATTCCATGT
1 TGAAACAGGGCCAGAACTGTTTCTGGATTCC-TGT
69083986 TGAAACAGGGCCAGAACTGTTTCTGGATTCCTGT
1 TGAAACAGGGCCAGAACTGTTTCTGGATTCCTGT
69084020 T
1 T
69084021 CCGACTTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (34 bp):
TGAAACAGGGCCAGAACTGTTTCTGGATTCCTGT
Found at i:69086444 original size:46 final size:46
Alignment explanation
Indices: 69086394--69086522 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
69086384 TGGTTGAGCA
*
69086394 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
69086440 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
69086486 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69086523 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:69093939 original size:46 final size:46
Alignment explanation
Indices: 69093889--69094064 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69093879 TGGTTGAGCA
69093889 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69093935 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69093980 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69094028 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69094065 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69094045 original size:93 final size:93
Alignment explanation
Indices: 69093886--69094057 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69093876 GGATGGTTGA
* *
69093886 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69093951 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69093979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69094044 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69094058 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69100295 original size:49 final size:47
Alignment explanation
Indices: 69100122--69100337 Score: 335
Period size: 47 Copynumber: 4.6 Consensus size: 47
69100112 CCCTTCGGGA
* * * * * *
69100122 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCC-CTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69100168 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69100215 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69100262 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69100311 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
69100338 TATTCAAATA
Statistics
Matches: 157, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
46 35 0.22
47 76 0.48
49 46 0.29
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69100302 original size:96 final size:93
Alignment explanation
Indices: 69100122--69100337 Score: 333
Period size: 96 Copynumber: 2.3 Consensus size: 93
69100112 CCCTTCGGGA
* * * * * *
69100122 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCCTCGGCCCTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCACTAGGCCCTATCACATATATACACT
69100187 TTCACATTCATCACATCGGCCATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
* *
69100215 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ACTAGGCCCTATCAC--ATATATAC
69100280 ACTTTCACATTCATCACATCGGCCATTAGGC
63 ACTTTCACATTCATCACATCGGCCATTAGGC
69100311 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
69100338 TATTCAAATA
Statistics
Matches: 112, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
93 35 0.31
94 11 0.10
96 66 0.59
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCACTAGGCCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:69103602 original size:40 final size:40
Alignment explanation
Indices: 69103564--69103752 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
69103554 GCTACTTGCT
* *
69103564 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
69103604 CAAGTGCTTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69103644 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
69103684 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
69103724 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
69103753 CACCCGAATA
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:69115631 original size:13 final size:13
Alignment explanation
Indices: 69115610--69115639 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
69115600 TATGGTCTAC
*
69115610 GATTTCACAAAAT
1 GATTCCACAAAAT
69115623 GATTCCACAAAAT
1 GATTCCACAAAAT
69115636 GATT
1 GATT
69115640 TCATGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (13 bp):
GATTCCACAAAAT
Found at i:69121791 original size:50 final size:49
Alignment explanation
Indices: 69121619--69121850 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
69121609 TCTATTGTGA
* *
69121619 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * * * *
69121668 GGTCGCATGTGTAGTACTAAATACAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * **
69121718 CGATCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
69121768 AGGTCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
69121818 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
69121851 TGCGTATAAG
Statistics
Matches: 150, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 69 0.46
50 46 0.31
51 35 0.23
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:69125617 original size:93 final size:93
Alignment explanation
Indices: 69125503--69125676 Score: 269
Period size: 93 Copynumber: 1.9 Consensus size: 93
69125493 GCCCGTAAGT
*
69125503 GAACTCGGACGTAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACGTAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
69125568 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CAAGCTCGGATGCCTAGTTATATCTCTC
* ** *
69125596 GAACTCGGAC-TCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACGT-AACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
69125660 ACAAGTTCGGATGCCTA
65 ACAAGCTCGGATGCCTA
69125677 AACATCCTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACGTAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTATATCTCTC
Found at i:69125689 original size:46 final size:48
Alignment explanation
Indices: 69125498--69125683 Score: 158
Period size: 46 Copynumber: 4.0 Consensus size: 48
69125488 AACCCGCCCG
* *
69125498 TAAGTGAACTCGGACGT-AACTCAACGAGCTCGG--GCAT-TCACATCCA
1 TAAGTGAACTCGGAC-TCAACTCAACGAGTTCGGATGCCTAT-ACATCCA
* * *
69125544 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CA
* * * *
69125594 T---CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCA
* *
69125637 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAAACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC
69125684 TAGTGACATG
Statistics
Matches: 111, Mismatches: 16, Indels: 24
0.74 0.11 0.16
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
45 3 0.03
46 58 0.52
47 27 0.24
48 10 0.09
50 5 0.05
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (48 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCA
Found at i:69128788 original size:23 final size:23
Alignment explanation
Indices: 69128757--69128813 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
69128747 TCTTGAATGT
*
69128757 ATGAAAATTTAGAAATTCATTGC
1 ATGATAATTTAGAAATTCATTGC
69128780 ATGATAATTTAGAAATTCATTGC
1 ATGATAATTTAGAAATTCATTGC
69128803 ATGATAATTTA
1 ATGATAATTTA
69128814 TGAATGTGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (23 bp):
ATGATAATTTAGAAATTCATTGC
Found at i:69132894 original size:27 final size:27
Alignment explanation
Indices: 69132630--69132893 Score: 402
Period size: 27 Copynumber: 9.8 Consensus size: 27
69132620 ATTACCAAAG
*
69132630 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
69132657 TATCCTCGATTTACAGAGTTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69132684 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
69132711 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69132738 TACTCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69132765 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
69132792 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69132819 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
69132846 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69132873 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
69132894 TTAAAATACT
Statistics
Matches: 217, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:69133022 original size:27 final size:27
Alignment explanation
Indices: 69132919--69133066 Score: 131
Period size: 27 Copynumber: 5.5 Consensus size: 27
69132909 TTTACAAAAT
* **
69132919 TACCAAAATACCCTCGATCAGTAAAAT
1 TACCAAAATACCCTTGATTTGTAAAAT
*
69132946 TACCAAAATACCCCT-AGTTTGTAAAAT
1 TACCAAAATACCCTTGA-TTTGTAAAAT
*
69132973 TACCAAAAATACCCTT-AGCTTGTAAAAT
1 TACC-AAAATACCCTTGA-TTTGTAAAAT
*
69133001 TACCAAAATACCCTTGATTTGTGAAAT
1 TACCAAAATACCCTTGATTTGTAAAAT
*** * * *
69133028 TATTGAAATACTCTCGATTTTTAAAA-
1 TACCAAAATACCCTTGATTTGTAAAAT
*
69133054 TACCGAAATACCC
1 TACCAAAATACCC
69133067 CTGTAGGGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.11
27 63 0.63
28 26 0.26
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCAAAATACCCTTGATTTGTAAAAT
Found at i:69133022 original size:55 final size:54
Alignment explanation
Indices: 69132887--69133029 Score: 146
Period size: 55 Copynumber: 2.6 Consensus size: 54
69132877 CTCGATTTAC
** * * ** *
69132887 AAAATTATTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTAGATCAGT
* * *
69132941 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAAATACCCTTAGCT-TGT
1 AAAATTACCAAAATACCCTTGA-TTTGTAAAATTACC-AAAATACCC-TAGATCAGT
*
69132996 AAAATTACCAAAATACCCTTGATTTGTGAAATTA
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTA
69133030 TTGAAATACT
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
54 28 0.38
55 41 0.56
56 4 0.05
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTAGATCAGT
Found at i:69133097 original size:27 final size:27
Alignment explanation
Indices: 69133054--69133193 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 27
69133044 ATTTTTAAAA
*
69133054 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCAAAATACCCCTGTAGGGTAGAAT
*
69133081 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCAAAATACCCCTGTAGGGTAGAAT
* * *
69133108 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCAAAATACCCCTGTAGGGTAGAAT
* *
69133135 TACTAAAATACCCCTATAGGGTAGAAT
1 TACCAAAATACCCCTGTAGGGTAGAAT
* * * * *
69133162 TACCGAGATACCCTTGTGGGGTAAAAT
1 TACCAAAATACCCCTGTAGGGTAGAAT
69133189 TACCA
1 TACCA
69133194 TTTTGCCCCT
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TACCAAAATACCCCTGTAGGGTAGAAT
Found at i:69133119 original size:54 final size:54
Alignment explanation
Indices: 69133054--69133191 Score: 222
Period size: 54 Copynumber: 2.6 Consensus size: 54
69133044 ATTTTTAAAA
* *
69133054 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAAT
*
69133108 TACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAAT
* * *
69133162 TACCGAGATACCCTTGTGGGGTAAAATTAC
1 TACCGAAATACCCTTGTAGGGTAGAATTAC
69133192 CATTTTGCCC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (54 bp):
TACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAAT
Found at i:69133433 original size:25 final size:25
Alignment explanation
Indices: 69133397--69133491 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
69133387 AGGAAGTGCT
* *
69133397 AAAAGGGTTTTGGCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
69133422 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
69133447 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
69133472 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69133492 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:69133504 original size:24 final size:24
Alignment explanation
Indices: 69133397--69133504 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
69133387 AGGAAGTGCT
* * *
69133397 AAAAGGGTTTTGGCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
69133421 GAAAAGGGCTTTGCCCCAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
69133446 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
69133471 AAAAAGGGCTTTGCCCCAG-TTATT
1 -AAAAGGGCTTTGCCCCAGTTTATC
69133495 AAAAGAGGCT
1 AAAAG-GGCT
69133505 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
23 5 0.06
24 8 0.10
25 64 0.83
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:69133515 original size:50 final size:50
Alignment explanation
Indices: 69133410--69133516 Score: 128
Period size: 50 Copynumber: 2.1 Consensus size: 50
69133400 AGGGTTTTGG
* **
69133410 CCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGC
1 CCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGC
* **
69133460 CCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGC
1 CCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGC
69133509 CTCCAGTT
1 C-CCAGTT
69133517 ATATGATAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 5 0.10
49 10 0.20
50 34 0.69
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (50 bp):
CCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGC
Found at i:69137678 original size:40 final size:40
Alignment explanation
Indices: 69137613--69137706 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
69137603 AACTATGTTC
*
69137613 GGCACTAAGTGTGCGGTTCGAAATAGCTTCGGCTACA-AA
1 GGCACTAAGTGTGCAGTTCGAAATAGCTTCGGCTACATAA
* * *
69137652 TGGCACTAAGTGTGCAAGTT-GGAATAGCTTCGGCTATATGA
1 -GGCACTAAGTGTGC-AGTTCGAAATAGCTTCGGCTACATAA
69137693 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
69137707 GATACTGAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (40 bp):
GGCACTAAGTGTGCAGTTCGAAATAGCTTCGGCTACATAA
Found at i:69140613 original size:48 final size:46
Alignment explanation
Indices: 69140512--69140637 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 46
69140502 GAGGGTAATT
*
69140512 TGCCGATGCCATGTCCCAGACATGGTCTTACATGAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACATGA-C-CTCGTCACAA
* *
69140560 TGCCGATGTCATGTCCCAGATATGGTCTTACACTGA-CTC-TCACAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACA-TGACCTCGTCACAA
*
69140605 TGTGGCCGATGCCATGTCCCAAACATGGTCTTA
1 --T-GCCGATGCCATGTCCCAGACATGGTCTTA
69140638 TACTAGTGCA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 5 0.07
46 3 0.04
47 1 0.01
48 56 0.82
49 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACATGACCTCGTCACAA
Found at i:69140696 original size:95 final size:96
Alignment explanation
Indices: 69140513--69140741 Score: 266
Period size: 95 Copynumber: 2.4 Consensus size: 96
69140503 AGGGTAATTT
* * * * *
69140513 GCCGATGCCATGTCCCAGACATGGTCTTACA-TGAGCTCTCGTCTCAATGCCGATGTCATGTCCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT-AGCTCACATCTCAATACCGATGCCATGTCCC
* * **
69140577 AGATATGGTCTTACACTGACTCTCACAATGTG
65 AGACATGATCTTACACTGACTCTCACAACATG
* * *
69140609 GCCGATGCCATGTCCCAAACATGGTCTTATACTAG-TGCACAT-TCAATACTGATGCCATGTCCT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-CACATCTCAATACCGATGCCATGTCCC
* *
69140672 AGACATGATCTTACACTGGCTCTCACAACATT
65 AGACATGATCTTACACTGACTCTCACAACATG
* * *
69140704 ACCGATGCCATATTCCAAACATGGTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC
69140742 TTATATCGTG
Statistics
Matches: 112, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
95 76 0.68
96 35 0.31
97 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAATACCGATGCCATGTCCCA
GACATGATCTTACACTGACTCTCACAACATG
Found at i:69141639 original size:28 final size:27
Alignment explanation
Indices: 69141586--69141639 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 27
69141576 ACAGGGGTTT
69141586 TCACACGACCTGACACAAGCCCTGTCCC
1 TCACACGACCTGACAC-AGCCCTGTCCC
*
69141614 TCACACGGCCATGACAC-GCCCGTGTC
1 TCACACGACC-TGACACAGCCC-TGTC
69141640 TTAGCCCGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 4 0.17
28 13 0.57
29 6 0.26
ACGTcount: A:0.22, C:0.44, G:0.19, T:0.15
Consensus pattern (27 bp):
TCACACGACCTGACACAGCCCTGTCCC
Found at i:69142853 original size:46 final size:48
Alignment explanation
Indices: 69142611--69142971 Score: 266
Period size: 46 Copynumber: 7.6 Consensus size: 48
69142601 GGTATAATGC
* * * *
69142611 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCATC-GATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATATCGAGGT
* * * * * *
69142658 CGATGCCATGTCCCGGACATGGTCTTACACTAACTATCGAAATCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATATCGAGGT
* *
69142707 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCTG-TGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATATC-GAGGT
* * * * *
69142757 CGATGCCATGTCCCAGACATGGTCTTACTCT-G-ACACATCTCGTA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCG-AGGT
* *
69142803 CGATG-CATGTCCCAGATAT-GTCTTACACTGGCT-TGCATATCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCGAGGT
* * * * *
69142849 CGATG-CATGTCTCAGACAT-GTCTTA-ATCTAGCTCTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACA-CTAGCTCTCATATCGAGGT
* * * * *
69142895 TGATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAGGT
*
69142943 CGATG-CATGTCCTAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
69142972 GGCACACAAA
Statistics
Matches: 249, Mismatches: 47, Indels: 37
0.75 0.14 0.11
Matches are distributed among these distances:
44 9 0.04
45 17 0.07
46 69 0.28
47 56 0.22
48 25 0.10
49 38 0.15
50 34 0.14
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGT
Found at i:69147718 original size:40 final size:40
Alignment explanation
Indices: 69147663--69147886 Score: 281
Period size: 40 Copynumber: 5.5 Consensus size: 40
69147653 TATTCGGATG
69147663 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
69147703 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
69147746 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
69147786 ATATCTGGGCTAAGTCCCGAAGGAATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
69147826 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAA-TTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACT
*
69147866 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
69147887 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 13 0.08
40 109 0.68
41 2 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:69147806 original size:83 final size:80
Alignment explanation
Indices: 69147667--69147886 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
69147657 CGGATGATAT
* * *
69147667 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGAATTTA
69147732 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
69147750 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTCCCGAAGGAATTTA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGAATTTA
*
69147815 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
69147830 CCGGGCTAAGACCCGAAGGCATTTGCGCGAATTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTATATCCGGGCTAAGTCCCGAAG
69147887 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 41 0.33
81 3 0.02
83 63 0.51
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGAATTTA
TGCTAGTGACTATAC
Found at i:69154541 original size:25 final size:21
Alignment explanation
Indices: 69154480--69154535 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
69154470 AAGCAGACAG
*
69154480 GGGC-ACACGCTCGTATGGAT
1 GGGCAACACGCCCGTATGGAT
69154500 GGGCAACACGCCCGTATGGAT
1 GGGCAACACGCCCGTATGGAT
69154521 GGGCAACACGCCCGT
1 GGGCAACACGCCCGT
69154536 GTGTATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.12
21 30 0.88
ACGTcount: A:0.21, C:0.30, G:0.34, T:0.14
Consensus pattern (21 bp):
GGGCAACACGCCCGTATGGAT
Found at i:69155777 original size:48 final size:48
Alignment explanation
Indices: 69155704--69155981 Score: 192
Period size: 48 Copynumber: 5.8 Consensus size: 48
69155694 AGGGTATTTG
* * *
69155704 CCGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCACATGTTAAGT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
* * * * * * *
69155752 CTGATGCCATATCCTAGACATGGTCTTACACTAGCTCTCGTCTCAATT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
* *
69155800 CCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCA--T-AATGT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA-GT
* * * * *
69155846 GGCCAATGCCATTGTCCCAGACATAGTCTTCCACTAG-TGCACATATCAA-T
1 --CCGATGCCA-TGTCCCAGACATGGTCTTACACTGGCT-CACATCTCAAGT
* ** * * *
69155896 GCTGATGCCATGTCCCAGACATAATCTTACACTGGCTCTCA-C-AACATT
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCA-AGT
* * * *
69155944 GCTGATGCCATGTTCCAAACATGGTCTTACATTGGCTC
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
69155982 TCATATCGTG
Statistics
Matches: 183, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 3 0.02
47 1 0.01
48 140 0.77
49 33 0.18
50 1 0.01
51 1 0.01
52 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
Found at i:69155980 original size:145 final size:144
Alignment explanation
Indices: 69155707--69155986 Score: 334
Period size: 145 Copynumber: 1.9 Consensus size: 144
69155697 GTATTTGCCG
* * * * * *
69155707 ATGCCATGTCCCAGACATGGTCTTGCACTGGCTCACATGTTAAGTCTGATGCCATATCCTAGACA
1 ATGCCATGTCCCAGACATAGTCTTCCACTAGCTCACATATCAAGTCTGATGCCATATCCCAGACA
** * * * *
69155772 TGGTCTTACACTAGCTCTCGTCTCAATTCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTC
66 TAATCTTACACTAGCTCTCGACACAATTCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
69155837 TCATAATGTGGCCA
131 TCATAATGTGGCCA
*
69155851 ATGCCATTGTCCCAGACATAGTCTTCCACTAG-TGCACATATCAA-TGCTGATGCCATGTCCCAG
1 ATGCCA-TGTCCCAGACATAGTCTTCCACTAGCT-CACATATCAAGT-CTGATGCCATATCCCAG
* * * *
69155914 ACATAATCTTACACTGGCTCTC-ACA-ACATTGCTGATGCCATGTTCCAAACATGGTCTTACATT
63 ACATAATCTTACACTAGCTCTCGACACA-ATT-CCGATGCCATGTCCCAAACATGGTCTTACACT
69155977 GGCTCTCATA
126 GGCTCTCATA
69155987 TCGTGGTTGA
Statistics
Matches: 114, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
143 1 0.01
144 12 0.11
145 101 0.89
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATAGTCTTCCACTAGCTCACATATCAAGTCTGATGCCATATCCCAGACA
TAATCTTACACTAGCTCTCGACACAATTCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
TCATAATGTGGCCA
Found at i:69162900 original size:22 final size:21
Alignment explanation
Indices: 69162854--69162910 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
69162844 CCAAATTAGA
*
69162854 GTCGAATCAATTCAAATCACT
1 GTCGAATCAATTCAAATCAAT
*
69162875 GTCGAATCATTATCAAAT-AAT
1 GTCGAATCAAT-TCAAATCAAT
69162896 GGTCGAA-CAAGTTCA
1 -GTCGAATCAA-TTCA
69162911 TAGTCTAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (21 bp):
GTCGAATCAATTCAAATCAAT
Found at i:69165820 original size:43 final size:43
Alignment explanation
Indices: 69165739--69165821 Score: 100
Period size: 43 Copynumber: 1.9 Consensus size: 43
69165729 AAATCGTACA
**
69165739 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGCCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATTG
69165782 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATA
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATA
69165822 CCGGAATCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 3 0.09
43 31 0.89
44 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATTG
Found at i:69172454 original size:30 final size:30
Alignment explanation
Indices: 69172420--69172476 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
69172410 TTCCTGAGCC
69172420 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
69172450 TAGGGGCAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAGTGTAAATATGCAAAA
69172477 TTTTGAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:69183185 original size:25 final size:25
Alignment explanation
Indices: 69183155--69183217 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
69183145 GTATATTGTC
* *
69183155 ACGAGCTATGAATCGGTATGCTCTT
1 ACGAGCTATAAATCGGTATGCTATT
*
69183180 ATGAGCTATAAATCGGTATGCTATT
1 ACGAGCTATAAATCGGTATGCTATT
69183205 ACGAGCTATAAAT
1 ACGAGCTATAAAT
69183218 TAATAACCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (25 bp):
ACGAGCTATAAATCGGTATGCTATT
Found at i:69184822 original size:35 final size:35
Alignment explanation
Indices: 69184783--69184876 Score: 145
Period size: 35 Copynumber: 2.7 Consensus size: 35
69184773 TGATTCTCAA
69184783 GTTAAGCATGCCATTATACTGATTCTAATTAACAT
1 GTTAAGCATGCCATTATACTGATTCTAATTAACAT
* * *
69184818 GTTAAGCATGCCAATATACTGATTCTTATTCACAT
1 GTTAAGCATGCCATTATACTGATTCTAATTAACAT
69184853 GTTAAGCATGCCACTT-TACTGATT
1 GTTAAGCATGCCA-TTATACTGATT
69184877 TTGATCCGTA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 53 0.98
36 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (35 bp):
GTTAAGCATGCCATTATACTGATTCTAATTAACAT
Found at i:69184890 original size:35 final size:35
Alignment explanation
Indices: 69184783--69184910 Score: 141
Period size: 35 Copynumber: 3.7 Consensus size: 35
69184773 TGATTCTCAA
* * **
69184783 GTTAAGCATGCCATTATACTGATTCTAATTAACAT
1 GTTAAGCATGCCACTATACTGATTCTTATCCACAT
* *
69184818 GTTAAGCATGCCAATATACTGATTCTTATTCACAT
1 GTTAAGCATGCCACTATACTGATTCTTATCCACAT
* **
69184853 GTTAAGCATGCCACTTTACTGATT-TTGATCCGTAT
1 GTTAAGCATGCCACTATACTGATTCTT-ATCCACAT
* *
69184888 GTTAAGCATGTCACTATATTGAT
1 GTTAAGCATGCCACTATACTGAT
69184911 ACTGAATCGC
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
34 2 0.02
35 79 0.98
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (35 bp):
GTTAAGCATGCCACTATACTGATTCTTATCCACAT
Found at i:69187411 original size:16 final size:15
Alignment explanation
Indices: 69187374--69187414 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
69187364 CACTTAATTC
69187374 CTTTCTTCTT-TTTTT
1 CTTTCTT-TTCTTTTT
69187389 CTTTCTTTTCTTTTT
1 CTTTCTTTTCTTTTT
69187404 CTTATCTTTTC
1 CTT-TCTTTTC
69187415 CATTAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.08
15 15 0.62
16 7 0.29
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
CTTTCTTTTCTTTTT
Found at i:69187411 original size:20 final size:20
Alignment explanation
Indices: 69187375--69187412 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69187365 ACTTAATTCC
*
69187375 TTTCTTCTTTTTTTCTTTCT
1 TTTCTTCTTTTTATCTTTCT
69187395 TTTCTT-TTTCTTATCTTT
1 TTTCTTCTTT-TTATCTTT
69187413 TCCATTAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTCTTCTTTTTATCTTTCT
Found at i:69188636 original size:19 final size:20
Alignment explanation
Indices: 69188597--69188639 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
69188587 GATGAACAAG
*
69188597 ATTGTTTTCCTAAAATATGC
1 ATTGTTTTACTAAAATATGC
*
69188617 ATTGTTTTAC-AAATTATGC
1 ATTGTTTTACTAAAATATGC
69188636 ATTG
1 ATTG
69188640 AATGATCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
ATTGTTTTACTAAAATATGC
Found at i:69194984 original size:45 final size:45
Alignment explanation
Indices: 69194894--69194984 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 45
69194884 CCAAAACATG
* *
69194894 TGTCACATATATCAGAAACTCAAACCACAACTTAATGAGTACAGA
1 TGTCACATATATCAGAAACACAAACCACAACTTAATAAGTACAGA
* *
69194939 TGTCACATATATCATG-AACACATACCACAA-TTCAATAAGTTCAGA
1 TGTCACATATATCA-GAAACACAAACCACAACTT-AATAAGTACAGA
69194984 T
1 T
69194985 TACATAATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
44 2 0.05
45 37 0.93
46 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCAGAAACACAAACCACAACTTAATAAGTACAGA
Found at i:69198294 original size:29 final size:29
Alignment explanation
Indices: 69198190--69198307 Score: 96
Period size: 29 Copynumber: 4.1 Consensus size: 29
69198180 TGTGAGCATG
* *
69198190 CATAT-AAGGTGATTTGGGCCT-AAGGAGC
1 CATATGAAGGTGAATTGGGCCTGATGG-GC
* * * * *
69198218 CATATAAAGGTGATTTGGACCTAATAGGC
1 CATATGAAGGTGAATTGGGCCTGATGGGC
* **
69198247 CATACGAATATGAATTGGGCCTGATGGGC
1 CATATGAAGGTGAATTGGGCCTGATGGGC
* *
69198276 CATATGAATGTGAATTGGGGCTTGATGGGC
1 CATATGAAGGTGAATT-GGGCCTGATGGGC
69198306 CA
1 CA
69198308 AGTGGGCCAT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
28 5 0.07
29 52 0.71
30 16 0.22
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
CATATGAAGGTGAATTGGGCCTGATGGGC
Found at i:69207032 original size:42 final size:42
Alignment explanation
Indices: 69206922--69207033 Score: 107
Period size: 42 Copynumber: 2.7 Consensus size: 42
69206912 AGTCATACCA
* **** * *
69206922 ATGCCATATCCCAGATATAGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCACAACG
* * * * *
69206964 ATGCCATGTCCCAAACACGGTATTACACAAAATCTCACAACG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCACAACG
*
69207006 ATGCCATATCCCGGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
69207034 GTAAACTTAT
Statistics
Matches: 52, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCACAACG
Found at i:69210492 original size:39 final size:39
Alignment explanation
Indices: 69210434--69210657 Score: 304
Period size: 39 Copynumber: 5.7 Consensus size: 39
69210424 TTCCAACACA
* *
69210434 AATGCCTTCGAGACTTAGCTCAGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
* * *
69210473 AATACCTTCTGGACTTAGCTCAGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
* * * *
69210512 AATGCCTTCGGGGCATAGCCCAGACATAACACTAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
* *
69210551 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
* * *
69210590 AATGCCTTTGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
* *
69210629 AATACCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCAGATATAA
69210658 ATCTCACACA
Statistics
Matches: 166, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 166 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.20
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCAGATATAACACCAGCACG
Found at i:69218545 original size:39 final size:38
Alignment explanation
Indices: 69218487--69218710 Score: 286
Period size: 39 Copynumber: 5.7 Consensus size: 38
69218477 TTCCAACACA
69218487 AATGCCTTCGGGACTTAGCTCGAATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGC-CGAATATAACACCAGCACG
* *
69218526 AATACCTTCGGGACTTAGCTCGAATATAACACTAGCACG
1 AATGCCTTCGGGACTTAGC-CGAATATAACACCAGCACG
* * *
69218565 AATGCCTTCGAGACTTAGCCCACACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCGA-ATATAACACCAGCACG
* *
69218604 AATGCCTTCGGGACTTAGCCTGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCC-GAATATAACACCAGCACG
* * * *
69218643 ATTGACTTCAGGACTTAGCCCAGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCGA-ATATAACACCAGCACG
*
69218682 AATGCCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAG-CCGAATATAA
69218711 ATCTCACACA
Statistics
Matches: 160, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.01
39 156 0.98
40 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAGCCGAATATAACACCAGCACG
Done.