Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 205 of 311
Found at i:70678760 original size:38 final size:38
Alignment explanation
Indices: 70678679--70678839 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 38
70678669 GAATCCAGTC
* * *
70678679 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* *
70678719 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* *
70678757 ACCAGCACGAAACCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* * * *
70678795 ACCAGCACGAAGCCTGCAGGATTTAGCCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
*
70678833 TCCAGCA
1 ACCAGCA
70678840 TTTAGCCTGC
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 85 0.79
39 5 0.05
40 18 0.17
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:70678810 original size:76 final size:78
Alignment explanation
Indices: 70678679--70678863 Score: 221
Period size: 76 Copynumber: 2.4 Consensus size: 78
70678669 GAATCCAGTC
* * * *
70678679 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTA
1 ACCAGCACAAAACCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCAGGATTTA
70678744 ACCCAGATATAAT
66 ACCCAGATATAAT
* *
70678757 ACCAGCACGAAACCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTA
1 ACCAGCACAAAACCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCAGGATTTA
* * *
70678820 GCCCGGATATATT
66 ACCCAGATATAAT
* *** * *
70678833 TCCAGCATTTAGCCTGCGGGTCTTTAAGCCC
1 ACCAGCACAAAACCTGCGGGACTTTAAGCCC
70678864 GGATGCACAT
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
76 57 0.63
77 10 0.11
78 23 0.26
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (78 bp):
ACCAGCACAAAACCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCAGGATTTA
ACCCAGATATAAT
Found at i:70678847 original size:38 final size:38
Alignment explanation
Indices: 70678679--70678867 Score: 189
Period size: 38 Copynumber: 4.9 Consensus size: 38
70678669 GAATCCAGTC
* * * *
70678679 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTT-AGCCCGGATATAAT
* * * *
70678719 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATAAT
* *
70678757 ACCAGCACGAAACCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATAAT
* *
70678795 ACCAGCACGAAGCCTGCAGGATTTAGCCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATAAT
* *** *
70678833 TCCAGCATTTAGCCTGCGGGTCTTTAAGCCCGGAT
1 ACCAGCACGAAGCCTGCGGG-ATTT-AGCCCGGAT
70678868 GCACATCAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
38 95 0.74
39 6 0.05
40 27 0.21
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATAAT
Found at i:70682777 original size:13 final size:13
Alignment explanation
Indices: 70682755--70682785 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70682745 TTGGTTTAGT
70682755 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
70682767 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
70682780 TTAGTT
1 TTAGTT
70682786 AATAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:70686701 original size:18 final size:18
Alignment explanation
Indices: 70686678--70686712 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
70686668 AATCTTCCTA
*
70686678 TCTTTTTATTTTTATTTT
1 TCTTTTTATTTTCATTTT
70686696 TCTTTTTATTTTCATTT
1 TCTTTTTATTTTCATTT
70686713 CAATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTATTTTCATTTT
Found at i:70689605 original size:13 final size:13
Alignment explanation
Indices: 70689583--70689613 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70689573 TTGGTTTAGT
70689583 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
70689595 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
70689608 TTAGTT
1 TTAGTT
70689614 AATAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:70697789 original size:15 final size:15
Alignment explanation
Indices: 70697765--70697803 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
70697755 CATGTGTAAA
*
70697765 AATAAGATACATATG
1 AATAAAATACATATG
*
70697780 TATAAAATACATATG
1 AATAAAATACATATG
70697795 AATAAAATA
1 AATAAAATA
70697804 ATAAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (15 bp):
AATAAAATACATATG
Found at i:70705580 original size:19 final size:19
Alignment explanation
Indices: 70705558--70705605 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
70705548 TCATCCCATG
*
70705558 CATTTTCATTGCATTGCAT
1 CATTTGCATTGCATTGCAT
70705577 CATTTGCATTGCATTGCAT
1 CATTTGCATTGCATTGCAT
70705596 CATTTGCATT
1 CATTTGCATT
70705606 AAATTTTCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (19 bp):
CATTTGCATTGCATTGCAT
Found at i:70708061 original size:9 final size:9
Alignment explanation
Indices: 70708047--70708102 Score: 73
Period size: 9 Copynumber: 6.4 Consensus size: 9
70708037 AGACCTTCAC
70708047 AAAAAAAAG
1 AAAAAAAAG
70708056 AAAAAAAAG
1 AAAAAAAAG
70708065 ---AAAAAG
1 AAAAAAAAG
70708071 AAAAAAAAG
1 AAAAAAAAG
*
70708080 AAAAAGAAG
1 AAAAAAAAG
70708089 AAAAGAAAAG
1 AAAA-AAAAG
70708099 AAAA
1 AAAA
70708103 GGAGAGGCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
6 6 0.15
9 27 0.66
10 8 0.20
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:70708070 original size:15 final size:15
Alignment explanation
Indices: 70708050--70708102 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
70708040 CCTTCACAAA
70708050 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
70708065 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
*
70708080 AAAAAG-AAGAAAAG
1 AAAAAGAAAAAAAAG
70708094 -AAAAGAAAA
1 AAAAAGAAAA
70708103 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
13 5 0.14
14 9 0.26
15 21 0.60
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:70708079 original size:24 final size:23
Alignment explanation
Indices: 70708047--70708103 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 23
70708037 AGACCTTCAC
70708047 AAAAAAAAGAAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAAAAG-AAAAG
*
70708071 AAAAAAAAGAAAAAGAAGAAAAG
1 AAAAAAAAGAAAAAAAAGAAAAG
70708094 AAAAGAAAAG
1 AAAA-AAAAG
70708104 GAGAGGCCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 9 0.29
24 22 0.71
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (23 bp):
AAAAAAAAGAAAAAAAAGAAAAG
Found at i:70711149 original size:99 final size:98
Alignment explanation
Indices: 70710935--70711177 Score: 328
Period size: 99 Copynumber: 2.5 Consensus size: 98
70710925 AGCTGAAGCT
* * * * * *
70710935 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
*
70711000 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCACTTAGTACTACACAC-TGACCTAACA
* * * * *
70711034 ATTTGATACACGTAGTAGCCTGCACTAAGTACTACACACGTGATCGAAGTTATCAGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATA
70711099 GTAGCCTGCACTTAGTACTACACA-TGCACC-AACA
64 GTAGCCTGCACTTAGTACTACACACTG-ACCTAACA
70711133 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
70711178 TCACAATAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
98 1 0.01
99 81 0.65
100 6 0.05
101 37 0.30
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (98 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
AGCCTGCACTTAGTACTACACACTGACCTAACA
Found at i:70711550 original size:35 final size:35
Alignment explanation
Indices: 70711499--70711565 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
70711489 ATATTTCATA
*
70711499 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
70711534 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
70711566 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:70711568 original size:19 final size:19
Alignment explanation
Indices: 70711511--70711568 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
70711501 AACAATCTTC
70711511 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
70711530 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
70711546 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
70711565 ATAT
1 ATAT
70711569 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:70711792 original size:30 final size:30
Alignment explanation
Indices: 70711758--70711817 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70711748 CTTTAATATG
70711758 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
70711788 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
70711818 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:70713184 original size:19 final size:19
Alignment explanation
Indices: 70713160--70713199 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
70713150 CAAATTACAT
*
70713160 AACCCAAATTTCAAACCCA
1 AACCCAAATTTAAAACCCA
70713179 AACCCAAATTTAAAACCCA
1 AACCCAAATTTAAAACCCA
70713198 AA
1 AA
70713200 ACCGAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.15
Consensus pattern (19 bp):
AACCCAAATTTAAAACCCA
Found at i:70713207 original size:19 final size:19
Alignment explanation
Indices: 70713163--70713207 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
70713153 ATTACATAAC
* *
70713163 CCAAATTTCAAACCCAAAC
1 CCAAATTTAAAACCCAAAA
70713182 CCAAATTTAAAACCCAAAA
1 CCAAATTTAAAACCCAAAA
*
70713201 CCGAATT
1 CCAAATT
70713208 AATCCTAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (19 bp):
CCAAATTTAAAACCCAAAA
Found at i:70719950 original size:39 final size:39
Alignment explanation
Indices: 70719896--70720064 Score: 257
Period size: 39 Copynumber: 4.3 Consensus size: 39
70719886 GCATGATATT
70719896 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
70719935 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* * *
70719974 TAGAAATATATCCGGACTTAAGGTCTGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* * **
70720013 TGGAATTATAATCCGGACTTAAGGTTCGCAGGTTACGTGC
1 TGGAATTAT-ATCCGGACTTAAGGTCCGCAGGCTATATGC
*
70720053 TGGAAATATATC
1 TGGAATTATATC
70720065 TGAGCTTAAA
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 85 0.72
40 33 0.28
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (39 bp):
TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
Found at i:70724601 original size:14 final size:14
Alignment explanation
Indices: 70724582--70724614 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
70724572 CGGGCTCACA
70724582 CAAAAAACA-AAAAC
1 CAAAAAA-ATAAAAC
70724596 CAAAAAAATAAAAC
1 CAAAAAAATAAAAC
70724610 CAAAA
1 CAAAA
70724615 TAATTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.79, C:0.18, G:0.00, T:0.03
Consensus pattern (14 bp):
CAAAAAAATAAAAC
Found at i:70728844 original size:16 final size:16
Alignment explanation
Indices: 70728823--70728864 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
70728813 TTATTAAATT
*
70728823 ATATATTTTAATTATA
1 ATATATTTTAATAATA
70728839 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
70728854 AT-TATGTTTAA
1 ATATAT-TTTAA
70728865 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:70728849 original size:15 final size:15
Alignment explanation
Indices: 70728814--70728855 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
70728804 TTAAGAATTT
*
70728814 TATTAAATTAT-ATA
1 TATTTAATTATAATA
70728828 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
70728842 TATTTAATAATAAT
1 TATTTAATTATAAT
70728856 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:70729101 original size:16 final size:16
Alignment explanation
Indices: 70729080--70729146 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
70729070 GATTTGATAT
70729080 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
70729096 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
70729112 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
*
70729128 TACACCT-TAATCTAA
1 TACACCTCTAATCCAA
70729143 TACA
1 TACA
70729147 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
15 11 0.23
16 37 0.77
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:70730013 original size:38 final size:37
Alignment explanation
Indices: 70729918--70730031 Score: 99
Period size: 37 Copynumber: 3.0 Consensus size: 37
70729908 ATAAGATGCT
* * *
70729918 TTCATGTATATATTGTTTTATTATATATTGGTTTGTTATTC
1 TTCAT-TATATATTG-TTTATTCTTTATT--TTTATTATTC
*
70729959 TGTCA-TGTATATTGTTTATTCTTTATTTTTATTATATC
1 T-TCATTATATATTGTTTATTCTTTATTTTTATTAT-TC
*
70729997 TTCATTATATATTGTTTA--CATTGATTTTTATTATT
1 TTCATTATATATTGTTTATTC-TTTATTTTTATTATT
70730032 GTATGTATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
36 2 0.03
37 23 0.37
38 15 0.24
39 11 0.17
40 8 0.13
41 1 0.02
42 3 0.05
ACGTcount: A:0.23, C:0.06, G:0.09, T:0.62
Consensus pattern (37 bp):
TTCATTATATATTGTTTATTCTTTATTTTTATTATTC
Found at i:70742608 original size:40 final size:40
Alignment explanation
Indices: 70742506--70742775 Score: 292
Period size: 40 Copynumber: 6.8 Consensus size: 40
70742496 CAGAGTTATC
* * * * * *
70742506 AAGTATAAACAGGGGCATGAAAGTGCATTCA-GAGTACCG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* * * *
70742545 AATTACAAACAGGGTCACATATGTGCAATCAGGGGTACCA
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* * * * *
70742585 AAGTACAAATAGGGGCACGTATGTACAATAAGGGGCACTG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* * *
70742625 AAGTACAAACAGGGGCATGTATGTGCAATCAAGGGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* *
70742665 AAGTACAAACAGGGGCACGTATGTGCCATTAGGGGTACCG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
** * *
70742705 AAGTACAAACAGGGGCACGTACATGTAATTAGGGGTACC-
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
*
70742744 AGAGTACAAACAGGGGCATGTATGTGCAATCA
1 A-AGTACAAACAGGGGCACGTATGTGCAATCA
70742776 TACAATAATT
Statistics
Matches: 188, Mismatches: 41, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
39 24 0.13
40 164 0.87
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.19
Consensus pattern (40 bp):
AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
Found at i:70742610 original size:20 final size:20
Alignment explanation
Indices: 70742585--70742725 Score: 76
Period size: 20 Copynumber: 7.0 Consensus size: 20
70742575 AGGGGTACCA
70742585 AAGTACAAATAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
*
70742605 ATGTAC-AATAAGGGGCAC-T
1 AAGTACAAAT-AGGGGCACGT
* *
70742624 GAAGTACAAACAGGGGCATGT
1 -AAGTACAAATAGGGGCACGT
* * * *
70742645 ATGTGC-AATCAAGGGTATCG-
1 AAGTACAAAT-AGGGGCA-CGT
*
70742665 AAGTACAAACAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
* * * * *
70742685 ATGTGCCATTAGGGGTACCG-
1 AAGTACAAATAGGGGCA-CGT
*
70742705 AAGTACAAACAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
70742725 A
1 A
70742726 CATGTAATTA
Statistics
Matches: 84, Mismatches: 27, Indels: 20
0.64 0.21 0.15
Matches are distributed among these distances:
19 10 0.12
20 66 0.79
21 8 0.10
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.17
Consensus pattern (20 bp):
AAGTACAAATAGGGGCACGT
Found at i:70742719 original size:120 final size:118
Alignment explanation
Indices: 70742505--70742775 Score: 339
Period size: 120 Copynumber: 2.3 Consensus size: 118
70742495 CCAGAGTTAT
* * * * * *
70742505 CAAGTATAAACAGGGGCATGAAAGTGCATTC-AGAGTACCGAATTACAAACAGGGTCACATATGT
1 CAAGTACAAACAGGGGCATGTATGTGCAATCAAGAGTACCGAAGTACAAACAGGGGCACATATGT
*
70742569 GCAATCAGGGGTACCAAAGTACAAATAGGGGCACGT-ATGTACAATAAGGGGCAC
66 GCAATCAGGGGTACCAAAGTACAAACAGGGGCACGTAATGT--AATAAGGGGCAC
* * * *
70742623 TGAAGTACAAACAGGGGCATGTATGTGCAATCAAGGGTATCGAAGTACAAACAGGGGCACGTATG
1 -CAAGTACAAACAGGGGCATGTATGTGCAATCAAGAGTACCGAAGTACAAACAGGGGCACATATG
* * * * *
70742688 TGCCATTAGGGGTACCGAAGTACAAACAGGGGCACGTACATGTAATTAGGGGTAC
65 TGCAATCAGGGGTACCAAAGTACAAACAGGGGCACGTA-ATGTAATAAGGGGCAC
70742743 CAGAGTACAAACAGGGGCATGTATGTGCAATCA
1 CA-AGTACAAACAGGGGCATGTATGTGCAATCA
70742776 TACAATAATT
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
119 27 0.21
120 100 0.76
122 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.18
Consensus pattern (118 bp):
CAAGTACAAACAGGGGCATGTATGTGCAATCAAGAGTACCGAAGTACAAACAGGGGCACATATGT
GCAATCAGGGGTACCAAAGTACAAACAGGGGCACGTAATGTAATAAGGGGCAC
Found at i:70744048 original size:25 final size:25
Alignment explanation
Indices: 70744014--70744072 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
70744004 AAATAATTTC
*
70744014 TAAAATTAAATATAACAATTAATAA
1 TAAATTTAAATATAACAATTAATAA
*
70744039 TAAATTTAAATATAATAATTAATAA
1 TAAATTTAAATATAACAATTAATAA
*
70744064 TAAGTTTAA
1 TAAATTTAA
70744073 CTTTTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAATTTAAATATAACAATTAATAA
Found at i:70744062 original size:12 final size:12
Alignment explanation
Indices: 70744014--70744060 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
70744004 AAATAATTTC
70744014 TAAAATTAAATA
1 TAAAATTAAATA
70744026 TAACAATT-AATAA
1 TAA-AATTAAAT-A
*
70744039 TAAATTTAAATA
1 TAAAATTAAATA
70744051 TAATAATTAA
1 TAA-AATTAA
70744061 TAATAAGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAATTAAATA
Found at i:70744791 original size:34 final size:34
Alignment explanation
Indices: 70744753--70744818 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
70744743 TAAACATAAT
70744753 TAACATACCTTAATTATATAATACTAATAGTAAC
1 TAACATACCTTAATTATATAATACTAATAGTAAC
*
70744787 TAACATACCTTAATTATATAATACTCATAGTA
1 TAACATACCTTAATTATATAATACTAATAGTA
70744819 TATATTATCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (34 bp):
TAACATACCTTAATTATATAATACTAATAGTAAC
Found at i:70752392 original size:200 final size:200
Alignment explanation
Indices: 70752042--70752427 Score: 558
Period size: 200 Copynumber: 1.9 Consensus size: 200
70752032 TACAAGACTA
* * * * *
70752042 GTAATTGAATTTAACCAAATAGATTTAATTGTTGCAATTTGAGTCAAAACTAAAATTTAAAAACC
1 GTAACTGAATTTAACCAAACAGATTTAATTGTTACAATTTAAATCAAAACTAAAATTTAAAAACC
*
70752107 AAAAAAATATAGAAACTAAATCTACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAGT
66 AAAAAAATATAGAAACTAAATCCACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAGT
*
70752172 ACAAGGGTTTGGCAGAATGTGTGTTTGGTTTTCTAGTCCAACTAGTTAAGAAAAATAGGCATATC
131 ACAAGGGTTTGGCAGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAAGAAAAATAGGCATATC
70752237 TACTG
196 TACTG
* * * * *
70752242 GTAACTGAATTTTACCAAACAGATTTAATTGTTACAGTTTAAATCAAGATTAAAATTTCAAAACC
1 GTAACTGAATTTAACCAAACAGATTTAATTGTTACAATTTAAATCAAAACTAAAATTTAAAAACC
* * * * * *
70752307 TAAAAAAATATAGAAACTATATCCATAATTTTTATAAAATATAGGTACTTATAGCAGAATTTAAG
66 -AAAAAAATATAGAAACTAAATCCACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAG
** * *
70752372 TA-GGGGGTTTGGCTGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAGGAAAAAT
130 TACAAGGGTTTGGCAGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAAGAAAAAT
70752428 GAGGGTATTT
Statistics
Matches: 163, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
200 104 0.64
201 59 0.36
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (200 bp):
GTAACTGAATTTAACCAAACAGATTTAATTGTTACAATTTAAATCAAAACTAAAATTTAAAAACC
AAAAAAATATAGAAACTAAATCCACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAGT
ACAAGGGTTTGGCAGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAAGAAAAATAGGCATATC
TACTG
Found at i:70754897 original size:29 final size:30
Alignment explanation
Indices: 70754841--70754898 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
70754831 TTTGGTGTTT
* *
70754841 TATTTGTACTTTCATAAAATGTCTAATGTGA
1 TATTTGTACTTT-AGAAAATGTCCAATGTGA
70754872 TATTTGTACTTT-GAAAATGTCCAATGT
1 TATTTGTACTTTAGAAAATGTCCAATGT
70754899 AATACCTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
31 12 0.48
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (30 bp):
TATTTGTACTTTAGAAAATGTCCAATGTGA
Found at i:70755156 original size:20 final size:21
Alignment explanation
Indices: 70755118--70755156 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70755108 AAATAAAACA
*
70755118 AAAAAAAAATTAAGTTAAATT
1 AAAAAAAAATTAAGCTAAATT
*
70755139 AAAAAACAATT-AGCTAAA
1 AAAAAAAAATTAAGCTAAA
70755157 CAAATGGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (21 bp):
AAAAAAAAATTAAGCTAAATT
Found at i:70755615 original size:20 final size:20
Alignment explanation
Indices: 70755592--70755669 Score: 72
Period size: 23 Copynumber: 3.8 Consensus size: 20
70755582 AAAAATTTTA
70755592 AAAAGAATT-AAAATTAATTT
1 AAAA-AATTCAAAATTAATTT
*
70755612 -AAAAATTCAAAA-TATTTAT
1 AAAAAATTCAAAATTAATT-T
70755631 AAAAAATTCAAAATTTATATTTT
1 AAAAAATTCAAAA-TTA-A-TTT
*
70755654 AAAAAATTAAAAATTA
1 AAAAAATTCAAAATTA
70755670 TAAAAAATAA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
18 8 0.17
19 8 0.17
20 12 0.25
22 5 0.10
23 13 0.27
24 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (20 bp):
AAAAAATTCAAAATTAATTT
Found at i:70755665 original size:22 final size:24
Alignment explanation
Indices: 70755623--70755671 Score: 75
Period size: 22 Copynumber: 2.1 Consensus size: 24
70755613 AAAATTCAAA
*
70755623 ATATTTATAAAAAATTCAAAATTT
1 ATATTTATAAAAAATTCAAAAATT
70755647 ATATTT-TAAAAAATT-AAAAATT
1 ATATTTATAAAAAATTCAAAAATT
70755669 ATA
1 ATA
70755672 AAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 9 0.38
23 9 0.38
24 6 0.25
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATTTATAAAAAATTCAAAAATT
Found at i:70755671 original size:40 final size:36
Alignment explanation
Indices: 70755574--70755684 Score: 107
Period size: 40 Copynumber: 2.9 Consensus size: 36
70755564 AACAAAAATA
* *
70755574 AAAAAATAAAAAATTTTAAAAAGAATTAAAATTAATTT
1 AAAAAATTAAAAATTAT-AAAA-AATTAAAATTAATTT
70755612 -AAAAATTCAAAATATTTATAAAAAATTCAAAATTTATATTTT
1 AAAAAATT-AAAA-A-TTATAAAAAATT-AAAA-TTA-A-TTT
*
70755654 AAAAAATTAAAAATTATAAAAAATAAAAATT
1 AAAAAATTAAAAATTATAAAAAATTAAAATT
70755685 CTAAAGAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
37 6 0.10
38 10 0.16
39 13 0.21
40 17 0.27
41 2 0.03
42 7 0.11
43 7 0.11
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (36 bp):
AAAAAATTAAAAATTATAAAAAATTAAAATTAATTT
Found at i:70755674 original size:16 final size:16
Alignment explanation
Indices: 70755653--70755694 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
70755643 ATTTATATTT
70755653 TAAAAAATTAAAAATTA
1 TAAAAAA-TAAAAATTA
*
70755670 TAAAAAATAAAAATTC
1 TAAAAAATAAAAATTA
*
70755686 TAAAGAATA
1 TAAAAAATA
70755695 TATAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
TAAAAAATAAAAATTA
Found at i:70758688 original size:24 final size:23
Alignment explanation
Indices: 70758636--70758679 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
70758626 CTCAAAATTT
70758636 ATAAATAACTTTAAAAAAAATAC
1 ATAAATAACTTTAAAAAAAATAC
*
70758659 ATAAAT-ACTTTCAAAAAAATA
1 ATAAATAACTTTAAAAAAAATA
70758680 TGAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAATAACTTTAAAAAAAATAC
Found at i:70758971 original size:23 final size:22
Alignment explanation
Indices: 70758937--70758981 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
70758927 GGATTTTTAT
70758937 TTTATTTAATAT-TAATTTTAAA
1 TTTATTTAATATAT-ATTTTAAA
*
70758959 TTTATTATTATATATATTTTAAA
1 TTTATT-TAATATATATTTTAAA
70758982 CATTTATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 13 0.65
24 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATTTAATATATATTTTAAA
Found at i:70759000 original size:25 final size:23
Alignment explanation
Indices: 70758951--70759000 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
70758941 TTTAATATTA
*
70758951 ATTTTAAATTTATTATTATATAT
1 ATTTTAAATTTATTATTATACAT
70758974 ATTTTAAACATTTATGTATT-TACAT
1 ATTTT-AA-ATTTAT-TATTATACAT
70758999 AT
1 AT
70759001 GTATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 5 0.22
24 2 0.09
25 12 0.52
26 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTTAAATTTATTATTATACAT
Found at i:70760192 original size:14 final size:14
Alignment explanation
Indices: 70760173--70760199 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70760163 TGCCAGATGA
70760173 CTTTTATTAAATAT
1 CTTTTATTAAATAT
70760187 CTTTTATTAAATA
1 CTTTTATTAAATA
70760200 ATTCTTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
CTTTTATTAAATAT
Found at i:70760319 original size:16 final size:17
Alignment explanation
Indices: 70760287--70760319 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70760277 GAATTGCAAT
*
70760287 GGGCCATATGAAGTGAA
1 GGGCCATATGAAATGAA
70760304 GGGCCA-ATGAAATGAA
1 GGGCCATATGAAATGAA
70760320 CTCTCACTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.12, G:0.33, T:0.15
Consensus pattern (17 bp):
GGGCCATATGAAATGAA
Found at i:70765186 original size:182 final size:181
Alignment explanation
Indices: 70764961--70765297 Score: 523
Period size: 182 Copynumber: 1.9 Consensus size: 181
70764951 TCAAATTTTT
* * *
70764961 GAATCAATCGATTCAAACTCAAATTCAATCTCATCCAATTTGATCATTAAAAAACTCAAACCACC
1 GAATCAATCAATTCAAACTCAAATTCAACCCCATCCAATTTGATCATTAAAAAACTCAAACCACC
70765026 TAAC-CTTAAACCCAAATTGAATCAAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAA
66 TAACTC-TAAACCCAAATTGAATCAAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAA
* *
70765090 CTGATTCGAACCTCTTAATGACCCAATTTGGAAATATCCGAATTTGAATATTC
130 CTGATTCGAACC-ATTAAAGACCCAATTTGGAAATATCCGAATTTGAATATTC
* * *
70765143 GAATCAATCAATTCAAACTCTAATTCAACCCCATCCTATTTGATCATTAAAAATCTCAAACCACC
1 GAATCAATCAATTCAAACTCAAATTCAACCCCATCCAATTTGATCATTAAAAAACTCAAACCACC
* ** ** *
70765208 TGACTCTAAACCCAAATTGAATTGAATTTGAATTAACTTGAAGGTGAAGTGATTAAAACTTGAAC
66 TAACTCTAAACCCAAATTGAATCAAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAAC
70765273 TGATTCGAACCATTAAAGACCCAAT
131 TGATTCGAACCATTAAAGACCCAAT
70765298 CCAAAAAAAC
Statistics
Matches: 140, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
181 12 0.09
182 127 0.91
183 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (181 bp):
GAATCAATCAATTCAAACTCAAATTCAACCCCATCCAATTTGATCATTAAAAAACTCAAACCACC
TAACTCTAAACCCAAATTGAATCAAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAAC
TGATTCGAACCATTAAAGACCCAATTTGGAAATATCCGAATTTGAATATTC
Found at i:70769492 original size:32 final size:32
Alignment explanation
Indices: 70769451--70769517 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
70769441 TAATATTCAC
70769451 AAAACTGTTGGGGGAAATTCAACAAAACCATT
1 AAAACTGTTGGGGGAAATTCAACAAAACCATT
70769483 AAAACTGTTGGGGGAAATTCAACAAAACCATT
1 AAAACTGTTGGGGGAAATTCAACAAAACCATT
70769515 AAA
1 AAA
70769518 GGTGTTCTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (32 bp):
AAAACTGTTGGGGGAAATTCAACAAAACCATT
Found at i:70771775 original size:22 final size:22
Alignment explanation
Indices: 70771747--70771791 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
70771737 ATTTATGTTA
70771747 AAATAATAAATTTATTAATAAT
1 AAATAATAAATTTATTAATAAT
70771769 AAATAATAAATTTATTAATAAT
1 AAATAATAAATTTATTAATAAT
70771791 A
1 A
70771792 TTTGTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATAATAAATTTATTAATAAT
Found at i:70771800 original size:19 final size:19
Alignment explanation
Indices: 70771778--70771817 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70771768 TAAATAATAA
70771778 ATTTATTAATAATATTTGT
1 ATTTATTAATAATATTTGT
** *
70771797 ATTTATTTTTATTATTTGT
1 ATTTATTAATAATATTTGT
70771816 AT
1 AT
70771818 ATCTACTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
ATTTATTAATAATATTTGT
Found at i:70771800 original size:60 final size:59
Alignment explanation
Indices: 70771687--70771802 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 59
70771677 TTAAATATGC
* * *
70771687 AAAATAAATAATTATATTTAATATTAAATAATAAAATATTTTATATTTTTATTTATGTT
1 AAAATAAATAATTATATTTAATAATAAATAATAAAATATTTAATATTTGTATTTATGTT
*
70771746 AAAAT-AATAAATT-TA-TTAATAATAAATAATAAATTTATTAATAATATTTGTATTTAT
1 AAAATAAAT-AATTATATTTAATAATAAATAATAAA-ATATT--TAATATTTGTATTTAT
70771803 TTTTATTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
57 17 0.35
58 9 0.18
59 9 0.18
60 14 0.29
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (59 bp):
AAAATAAATAATTATATTTAATAATAAATAATAAAATATTTAATATTTGTATTTATGTT
Found at i:70772544 original size:35 final size:35
Alignment explanation
Indices: 70772504--70772572 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
70772494 TTCAATTTTG
*
70772504 GAAAGTGATAATTTATCATGCAATAGTTACATTTA
1 GAAAGTGATAATTTATCATGCAATAGATACATTTA
* *
70772539 GAAAGTGATAATTTATCATTCAATGGATACATTT
1 GAAAGTGATAATTTATCATGCAATAGATACATTT
70772573 TCATGGGACA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
GAAAGTGATAATTTATCATGCAATAGATACATTTA
Found at i:70778884 original size:17 final size:17
Alignment explanation
Indices: 70778862--70778896 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
70778852 TACAGCAACG
70778862 CTCAAACTTGATCGCCA
1 CTCAAACTTGATCGCCA
70778879 CTCAAACTTGATCGCCA
1 CTCAAACTTGATCGCCA
70778896 C
1 C
70778897 CAAGTCGCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.37, G:0.11, T:0.23
Consensus pattern (17 bp):
CTCAAACTTGATCGCCA
Found at i:70790296 original size:28 final size:28
Alignment explanation
Indices: 70790233--70790383 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
70790223 ATATTAAGTC
*
70790233 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70790260 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
70790288 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70790316 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70790344 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70790373 CGCACACTTAG
1 CGCACACTTAG
70790384 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70795557 original size:29 final size:29
Alignment explanation
Indices: 70795499--70795655 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
70795489 ATAGTAAGTC
*
70795499 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
70795527 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
70795556 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
70795585 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
70795613 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
70795642 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70795656 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:70795606 original size:57 final size:58
Alignment explanation
Indices: 70795499--70795655 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
70795489 ATAGTAAGTC
*
70795499 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
70795556 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
70795613 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
70795656 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:70804689 original size:36 final size:37
Alignment explanation
Indices: 70804617--70804694 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
70804607 TTATTACGAA
* *
70804617 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
70804654 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
70804690 GTCTT
1 GTCTT
70804695 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:70804924 original size:47 final size:47
Alignment explanation
Indices: 70804812--70805372 Score: 888
Period size: 47 Copynumber: 12.1 Consensus size: 47
70804802 GCCCTTCGGG
*
70804812 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
70804862 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATGC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* * * * * *
70804909 ACTTTCACATCCATCACGTTGGCCACTCGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70804956 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70805003 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
70805050 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
70805097 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
70805144 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70805191 ACTTTCACATTCATCACAT----C----GGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
70805230 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70805277 ACTTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
70805323 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70805370 ACT
1 ACT
70805373 GTCTTGGCTG
Statistics
Matches: 479, Mismatches: 23, Indels: 21
0.92 0.04 0.04
Matches are distributed among these distances:
39 37 0.08
43 1 0.00
46 45 0.09
47 357 0.75
49 35 0.07
50 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:70808110 original size:29 final size:29
Alignment explanation
Indices: 70808052--70808237 Score: 279
Period size: 29 Copynumber: 6.5 Consensus size: 29
70808042 ATAGTAAGTC
*
70808052 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
70808080 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
70808109 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
70808138 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
70808167 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
70808195 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
70808224 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70808238 CAATCTCATG
Statistics
Matches: 146, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
28 39 0.27
29 105 0.72
30 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:70808134 original size:58 final size:58
Alignment explanation
Indices: 70808052--70808237 Score: 288
Period size: 57 Copynumber: 3.2 Consensus size: 58
70808042 ATAGTAAGTC
70808052 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
70808109 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
70808167 CGCACACTTAGTGC-TATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACT
70808224 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70808238 CAATCTCATG
Statistics
Matches: 120, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
57 60 0.50
58 60 0.50
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (58 bp):
CGCACACTTAGTGCTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:70811583 original size:92 final size:92
Alignment explanation
Indices: 70811423--70811650 Score: 278
Period size: 92 Copynumber: 2.5 Consensus size: 92
70811413 GCTTTCTGAA
* * * ** *
70811423 ATGAAATGTGTAAGACCATGGTTGAAAGATACCA-AGGCAACATGATGTGAAATGTGTAAGACCG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATA-GCAACATGACGGGAAATGAATAAGACCA
* * *
70811487 TGGTTGAAAGATACCATGGCAACATGAT
65 TGGTTGAAAGATACCATAGAAACATGAC
*
70811515 ATGAAGTGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGGGAAATGAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGGGAAATGAATAAGACCAT
70811580 GGTTGAAAGATACCATAGAAACATGAC
66 GGTTGAAAGATACCATAGAAACATGAC
* * * * * * * *
70811607 AGGAAATGAGTAAAACAATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATAGCAACATG
70811651 TCAAAGATAA
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
92 115 0.99
93 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (92 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGGGAAATGAATAAGACCAT
GGTTGAAAGATACCATAGAAACATGAC
Found at i:70811603 original size:46 final size:46
Alignment explanation
Indices: 70811425--70811635 Score: 246
Period size: 46 Copynumber: 4.6 Consensus size: 46
70811415 TTTCTGAAAT
* *
70811425 GAAATGTGTAAGACCATGGTTGAAAGATACCA-AGGCAACATGA-TG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATA-GCAACATGACAG
* * * * *
70811470 TGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAACATGATAT
1 -GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
* * * *
70811517 GAAGTGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
* *
70811563 GAAATGAATAAGACCATGGTTGAAAGATACCATAGAAACATGACAG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
* * *
70811609 GAAATGAGTAAAACAATAGTTGAAAGA
1 GAAATGAGTAAGACCATGGTTGAAAGA
70811636 CACTATGGCA
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
46 142 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (46 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
Found at i:70813969 original size:13 final size:14
Alignment explanation
Indices: 70813935--70813971 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
70813925 TCTGAGAGAC
*
70813935 AAATGTGAAATATT
1 AAATGTGAAATATA
70813949 AAAT-TGAAA-ATA
1 AAATGTGAAATATA
70813961 AAATGTGAAAT
1 AAATGTGAAAT
70813972 GAAAGGATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 6 0.30
13 10 0.50
14 4 0.20
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.30
Consensus pattern (14 bp):
AAATGTGAAATATA
Found at i:70814199 original size:21 final size:21
Alignment explanation
Indices: 70814175--70814241 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
70814165 AGTAAAATAA
70814175 GGAAATAAAGTGAAGAAAAGG
1 GGAAATAAAGTGAAGAAAAGG
* ** *
70814196 GGAATTTTGAGTTTAA-AATAA-G
1 GGAA-ATAAAG-TGAAGAA-AAGG
70814218 -GAAATAAAGTGAAGAAAAGG
1 GGAAATAAAGTGAAGAAAAGG
70814238 GGAA
1 GGAA
70814242 TTTTTGAGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 5 0.16
20 6 0.19
21 10 0.31
22 6 0.19
23 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.18
Consensus pattern (21 bp):
GGAAATAAAGTGAAGAAAAGG
Found at i:70814226 original size:42 final size:43
Alignment explanation
Indices: 70814167--70814251 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 43
70814157 ATTGATATAG
70814167 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAA-TTTTGAGTT
1 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTTGAGTT
70814209 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTTGAGTT
1 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTTGAGTT
70814252 ATGTCAATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 33 0.79
43 9 0.21
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.25
Consensus pattern (43 bp):
TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTTGAGTT
Found at i:70821519 original size:46 final size:46
Alignment explanation
Indices: 70821467--70821725 Score: 358
Period size: 46 Copynumber: 5.6 Consensus size: 46
70821457 GCTTTCTAAA
* *
70821467 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
70821513 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
70821559 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGGC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
70821605 ATGAAATGAACAACACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
70821651 GA-GAAATGAATAAGACCATGGTTGAAAGATACCATTGCAACATGAC
1 -ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
70821697 AGGAAATAAGTAAGACCATAGTTGAAAGA
1 ATGAAATGAGTAAGACCATGGTTGAAAGA
70821726 CACTATAGCA
Statistics
Matches: 194, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 192 0.99
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:70821538 original size:21 final size:21
Alignment explanation
Indices: 70821514--70821585 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
70821504 CAACATGATA
70821514 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * * *
70821535 TGAAA-GATATCATGGCAACATGAT
1 TGAAATG-TGT-A-AG-ACCATGGT
70821559 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
70821581 TGAAA
1 TGAAA
70821586 GATACCATGG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 12 0.32
22 7 0.19
23 2 0.05
24 7 0.19
25 7 0.19
26 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:70824856 original size:47 final size:47
Alignment explanation
Indices: 70824793--70825109 Score: 562
Period size: 47 Copynumber: 6.7 Consensus size: 47
70824783 ATGATAGTAT
70824793 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70824840 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70824887 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70824934 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
70824981 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70825028 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
70825077 GGCCTAATGACCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
70825110 CCCGAAGGGC
Statistics
Matches: 263, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
47 219 0.83
49 40 0.15
50 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:70825296 original size:37 final size:37
Alignment explanation
Indices: 70825227--70825305 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
70825217 CCGAGCTCTA
* * * *
70825227 AAGACCCGATGACTACGTGAGGGGATTTTGTCCAGGT
1 AAGACCCGATAACTACATGAGGAGATTATGTCCAGGT
* * *
70825264 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGAGGAGATTATGTCCAGGT
70825301 AAGAC
1 AAGAC
70825306 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACATGAGGAGATTATGTCCAGGT
Found at i:70827281 original size:17 final size:17
Alignment explanation
Indices: 70827239--70827285 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
70827229 TATTTCAAAA
*
70827239 TTAATTTTAT-TTTAAT
1 TTAATTTAATATTTAAT
* *
70827255 AT-ATTAAATATTTAAT
1 TTAATTTAATATTTAAT
70827271 TTAATTTAATATTTA
1 TTAATTTAATATTTA
70827286 TCTTGATAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
15 5 0.21
16 8 0.33
17 11 0.46
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAATTTAATATTTAAT
Found at i:70827322 original size:57 final size:58
Alignment explanation
Indices: 70827249--70827367 Score: 186
Period size: 57 Copynumber: 2.1 Consensus size: 58
70827239 TTAATTTTAT
* * * *
70827249 TTTAATATATTAAATATTTAATTTAATTTAATATTTATCTTGAT-AGTATTCTATTAA
1 TTTAATAGATTAAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
*
70827306 TTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
1 TTTAATAGATTAAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
70827364 TTTA
1 TTTA
70827368 GAGTAAACTA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 40 0.71
58 16 0.29
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.53
Consensus pattern (58 bp):
TTTAATAGATTAAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
Found at i:70829988 original size:46 final size:45
Alignment explanation
Indices: 70829913--70830082 Score: 162
Period size: 46 Copynumber: 3.7 Consensus size: 45
70829903 TGTAACCCGC
* *
70829913 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * *
70829959 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** * ** *
70830005 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
70830052 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
70830083 TTCAGATGCC
Statistics
Matches: 99, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 63 0.64
47 33 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:70830079 original size:93 final size:93
Alignment explanation
Indices: 70829920--70830092 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
70829910 CGCCCATAAG
** * * *
70829920 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
70829985 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCAGATGCCTAGTTACATCTCT
* *
70830013 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
70830078 ACGAGTTCAGATGCC
66 ACGAGCTCAGATGCC
70830093 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCT
Found at i:70832512 original size:15 final size:15
Alignment explanation
Indices: 70832488--70832563 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
70832478 AGGAAACCGA
70832488 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
70832503 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
70832517 AATAAAG-AATCC-AG
1 -ATAAAGAAATCCAAG
* *
70832531 A-ATAAGAGATCCAGG
1 ATA-AAGAAATCCAAG
*
70832546 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70832561 ATA
1 ATA
70832564 TGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
12 1 0.02
13 4 0.08
14 13 0.27
15 30 0.61
16 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70832551 original size:28 final size:29
Alignment explanation
Indices: 70832486--70832563 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 29
70832476 CAAGGAAACC
70832486 GAATAAAGAAATCCAAGATAGAGAAATCCA
1 GAATAAAG-AATCCAAGATAGAGAAATCCA
*
70832516 GAATAAAGAATCC-AGAATA-AGAGATCCA
1 GAATAAAGAATCCAAG-ATAGAGAAATCCA
* *
70832544 GGATAAAGAAACCCAAGATA
1 GAATAAAG-AATCCAAGATA
70832564 TGATACTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
28 17 0.40
29 15 0.36
30 10 0.24
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.13
Consensus pattern (29 bp):
GAATAAAGAATCCAAGATAGAGAAATCCA
Found at i:70835543 original size:45 final size:44
Alignment explanation
Indices: 70835486--70835649 Score: 174
Period size: 45 Copynumber: 3.6 Consensus size: 44
70835476 CGCCCATAAG
70835486 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCCATAGT
* *
70835531 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T--C
1 GAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTGCATC-CATAGT
* * *
70835578 GAACTCGGACTCAACTCAACGAGTTC-GACATTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCAT-AGT
*
70835622 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
70835650 ATGCCCAAAT
Statistics
Matches: 101, Mismatches: 7, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
40 1 0.01
41 7 0.07
43 1 0.01
44 26 0.26
45 29 0.29
46 1 0.01
47 26 0.26
48 1 0.01
49 5 0.05
50 4 0.04
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAGT
Found at i:70835642 original size:91 final size:92
Alignment explanation
Indices: 70835486--70835654 Score: 279
Period size: 91 Copynumber: 1.8 Consensus size: 92
70835476 CGCCCATAAG
* *
70835486 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
70835551 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
70835578 GAACTCGGACTCAACTCAACGAGTTC-GACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
*
70835641 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
70835655 CAAATATCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
90 8 0.11
91 39 0.54
92 25 0.35
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:70838419 original size:21 final size:20
Alignment explanation
Indices: 70838391--70838430 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
70838381 AGGCTATCTA
**
70838391 TAATGGTATTGCGATACTAG
1 TAATGGTATCACGATACTAG
70838411 TAATGGGTATCACGATACTA
1 TAAT-GGTATCACGATACTA
70838431 AGACACCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (20 bp):
TAATGGTATCACGATACTAG
Found at i:70840427 original size:20 final size:21
Alignment explanation
Indices: 70840404--70840452 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
70840394 ATTTATAAAT
*
70840404 ATTTTATAAAATT-TTATGAC
1 ATTTTATAAAATTCTTATAAC
**
70840424 ATTTT-TTTAATTCTTATAAC
1 ATTTTATAAAATTCTTATAAC
70840444 ATTTTATAA
1 ATTTTATAA
70840453 GTATATTTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
19 5 0.23
20 16 0.73
21 1 0.05
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (21 bp):
ATTTTATAAAATTCTTATAAC
Found at i:70840448 original size:40 final size:40
Alignment explanation
Indices: 70840364--70840452 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
70840354 TAAGTTCTTA
* * *
70840364 ATTTCATAAAATTTTATAACCTATATTTTAATTTATAAAT
1 ATTTTATAAAATTTTATAACATATATTTTAATTTATAAAC
* *
70840404 ATTTTATAAAATTTTATGACAT-TTTTTTAATTCT-TATAAC
1 ATTTTATAAAATTTTATAACATATATTTTAATT-TATA-AAC
70840444 ATTTTATAA
1 ATTTTATAA
70840453 GTATATTTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 11 0.26
40 31 0.74
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (40 bp):
ATTTTATAAAATTTTATAACATATATTTTAATTTATAAAC
Found at i:70842331 original size:15 final size:15
Alignment explanation
Indices: 70842311--70842340 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70842301 GAGATATGTT
*
70842311 GAAGCAGCTGCTTGG
1 GAAGCAGCGGCTTGG
70842326 GAAGCAGCGGCTTGG
1 GAAGCAGCGGCTTGG
70842341 ATTTCCTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.20, G:0.43, T:0.17
Consensus pattern (15 bp):
GAAGCAGCGGCTTGG
Found at i:70844278 original size:31 final size:31
Alignment explanation
Indices: 70844210--70844270 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
70844200 TTAGGAGCCA
* * *
70844210 AATGACTTAAATAAAAATTTTCGAATAATTC
1 AATGACTGAAATAAAAACTTTCAAATAATTC
70844241 AATGACTGAAATAAAAACTTTCAAATAATT
1 AATGACTGAAATAAAAACTTTCAAATAATT
70844271 TAGTGACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.33
Consensus pattern (31 bp):
AATGACTGAAATAAAAACTTTCAAATAATTC
Found at i:70847282 original size:36 final size:36
Alignment explanation
Indices: 70847240--70847315 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
70847230 TTCAAATTTG
70847240 AAATAATAAAATTTAAATATTTAATATTTTAAAATA
1 AAATAATAAAATTTAAATATTTAATATTTTAAAATA
*
70847276 AAATAATAAAATTTAAATATTTAATATTTTAAAATT
1 AAATAATAAAATTTAAATATTTAATATTTTAAAATA
70847312 AAAT
1 AAAT
70847316 TAAATTAGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (36 bp):
AAATAATAAAATTTAAATATTTAATATTTTAAAATA
Found at i:70850396 original size:31 final size:29
Alignment explanation
Indices: 70850361--70850418 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
70850351 AATATTATTT
*
70850361 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
70850392 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
70850419 GTAGATAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:70851453 original size:16 final size:16
Alignment explanation
Indices: 70851432--70851477 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
70851422 TATAATTGTT
70851432 TATAATATTTATATTA
1 TATAATATTTATATTA
70851448 TATAAT-TTTATAATTA
1 TATAATATTTAT-ATTA
*
70851464 TGAT-ATATATATAT
1 T-ATAATATTTATAT
70851478 AAGATGATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
TATAATATTTATATTA
Found at i:70853399 original size:44 final size:42
Alignment explanation
Indices: 70853346--70853508 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 42
70853336 TCGATATGTA
70853346 ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGACTTATG
1 ATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGA-TT-TG
* * * * *
70853389 ATTTATGTGTAAGACCATGCCTAGGACATCGGTATCGTATTTG
1 ATTTACGTGTAAGACCATGTCTGGGACATTGGCATCG-ATTTG
* * *
70853432 ATTT-CGTGTAAGACCCTGTCTGAGACAATGGCATCGATATTTG
1 ATTTACGTGTAAGACCATGTCTGGGACATTGGCATCG--ATTTG
* * * *
70853475 A-TTACATGTAAGACAACGTCTGGGACTTTGGCAT
1 ATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
70853509 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
42 26 0.27
43 40 0.42
44 29 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
ATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGATTTG
Found at i:70857870 original size:22 final size:22
Alignment explanation
Indices: 70857799--70857868 Score: 122
Period size: 22 Copynumber: 3.2 Consensus size: 22
70857789 TTAGGTACAG
70857799 AGCCCGAATAACACCGACACAA
1 AGCCCGAATAACACCGACACAA
70857821 AGCCCGAATAACACCGACACAA
1 AGCCCGAATAACACCGACACAA
* *
70857843 AGCCTGAATATCACCGACACAA
1 AGCCCGAATAACACCGACACAA
70857865 AGCC
1 AGCC
70857869 TGCTAGGCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.43, C:0.36, G:0.14, T:0.07
Consensus pattern (22 bp):
AGCCCGAATAACACCGACACAA
Found at i:70857902 original size:38 final size:38
Alignment explanation
Indices: 70857836--70857934 Score: 135
Period size: 38 Copynumber: 2.6 Consensus size: 38
70857826 GAATAACACC
* * *
70857836 GACACAAAGCCTGAATATCACCGACACAAAGCCTGCTA
1 GACACATAGCCCGAATATCACCGACACAAAGCCTACTA
* * *
70857874 GGCACATAGCCCGAATATTACCGGCACAAAGCCTACTA
1 GACACATAGCCCGAATATCACCGACACAAAGCCTACTA
*
70857912 GACACATAGCCCAAATATCACCG
1 GACACATAGCCCGAATATCACCG
70857935 CATTTCTATT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.37, C:0.32, G:0.16, T:0.14
Consensus pattern (38 bp):
GACACATAGCCCGAATATCACCGACACAAAGCCTACTA
Found at i:70860266 original size:18 final size:18
Alignment explanation
Indices: 70860245--70860300 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 18
70860235 TAACATAACT
70860245 AATAA-AATAAATAATAAA
1 AATAAGAAT-AATAATAAA
* *
70860263 AATAAGGATAATAATAAC
1 AATAAGAATAATAATAAA
70860281 AATAACGATGATAATAATAA
1 AATAA-GA--ATAATAATAA
70860301 TGACAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 18 0.58
19 3 0.10
21 10 0.32
ACGTcount: A:0.66, C:0.04, G:0.07, T:0.23
Consensus pattern (18 bp):
AATAAGAATAATAATAAA
Found at i:70862819 original size:47 final size:46
Alignment explanation
Indices: 70862765--70862987 Score: 184
Period size: 49 Copynumber: 4.7 Consensus size: 46
70862755 TACTTGTGTA
70862765 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGATAG
* * * *
70862812 CCAGTGTAAGACGTGTCTGGGACACGCATCGG-CT-AAGGTTTG-T-G
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-G-ATGATAG
* * ** * *
70862856 CTAGTGTAAGACATGTCTGGGACATGCATCAGCACATATAGACGAAAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGAGATGATAG
* * *
70862904 CTAGTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGATAG
* * *
70862953 CCACTCTAAGACCATGTCTGAGACATGGCATCGGC
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
70862988 AACATATCCC
Statistics
Matches: 143, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 29 0.20
45 3 0.02
46 6 0.04
47 32 0.22
48 14 0.10
49 51 0.36
50 8 0.06
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAG
Found at i:70866477 original size:55 final size:55
Alignment explanation
Indices: 70866411--70866532 Score: 181
Period size: 55 Copynumber: 2.2 Consensus size: 55
70866401 GCACTTAAAA
* * *
70866411 TTTAAAGTCAGTTTTGTTCACGGACAGGCCACACGGACGTGTGTAATGGTCGTGT
1 TTTAAAGTCAGTGTTGTACACGGACAAGCCACACGGACGTGTGTAATGGTCGTGT
* ** *
70866466 TTTAAAGTCAGTGTTGTACACGGGCAAGCCACACGGGTGTGTGTCATGGTCGTGT
1 TTTAAAGTCAGTGTTGTACACGGACAAGCCACACGGACGTGTGTAATGGTCGTGT
70866521 TTTAAAGTCAGT
1 TTTAAAGTCAGT
70866533 ATTGCATACG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (55 bp):
TTTAAAGTCAGTGTTGTACACGGACAAGCCACACGGACGTGTGTAATGGTCGTGT
Found at i:70883591 original size:30 final size:30
Alignment explanation
Indices: 70883557--70883614 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
70883547 TTTTCAAGCA
*
70883557 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
70883587 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
70883615 GTGTAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:70884046 original size:47 final size:46
Alignment explanation
Indices: 70883934--70884060 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
70883924 TCACTTGTGT
* * **
70883934 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACAA
* *
70883980 GAGCTAGTGTAAGATCATGTCTGGGACGTGGCATCAG-CATCGAGACAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CAAGACAA
* *
70884028 GTGCTAGTGTAAGACATGTTTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
70884061 GGCTGTGAGA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 19 0.28
47 27 0.39
48 23 0.33
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACAA
Found at i:70886928 original size:85 final size:85
Alignment explanation
Indices: 70886785--70887028 Score: 314
Period size: 85 Copynumber: 2.9 Consensus size: 85
70886775 GTCTGAGACA
* *
70886785 TCGTGTAAGACCATGTCTGGGACACAGGCCTCAATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
70886850 CATCGGCATCGTAATC-GATT
66 CATCGGCATCGT-ATCTGATT
* * *
70886870 TCGTGTAAGACCGTGTCTGGGACACATGCCTCGATTGAGATTTACATAAAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
*
70886935 TATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * * * * *
70886955 TCATGTAAGACCCTATCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCATGTCTGGGACACAGGCCTCG--ATTGAGATTTACATATAAGACCATGTCTGG
*
70887018 GACGTCGGCAT
64 GACATCGGCAT
70887029 TGTACTTGTT
Statistics
Matches: 139, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
84 3 0.02
85 130 0.94
86 1 0.01
87 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:70886955 original size:43 final size:42
Alignment explanation
Indices: 70886788--70887028 Score: 188
Period size: 43 Copynumber: 5.7 Consensus size: 42
70886778 TGAGACATCG
* * *
70886788 TGTAAGACCATGTCTGGGACA-CAGGCCTC-AATTGAGATTTACG
1 TGTAAGACCATGTCTGGGACATC-GGCATCGTATT--GATTTACA
* * *
70886831 TATAAGACCATGTCTGGGACATCGGCATCGTAATCGATTT-CG
1 TGTAAGACCATGTCTGGGACATCGGCATCGT-ATTGATTTACA
* * *
70886873 TGTAAGACCGTGTCTGGGACA-CATGCCTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATC-GGCATCGTATT--GATTTACA
** *
70886916 TAAAAGACCATGTCTGGGATATCGGCATCGTATCTGATTT-CA
1 TGTAAGACCATGTCTGGGACATCGGCATCGTAT-TGATTTACA
* * ** *
70886958 TGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTGATTTACA
* *
70887001 TGTAAGACCACGTCTGGGACGTCGGCAT
1 TGTAAGACCATGTCTGGGACATCGGCAT
70887029 TGTACTTGTT
Statistics
Matches: 156, Mismatches: 30, Indels: 24
0.74 0.14 0.11
Matches are distributed among these distances:
40 2 0.01
41 1 0.01
42 61 0.39
43 85 0.54
44 4 0.03
45 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTATTGATTTACA
Found at i:70896235 original size:46 final size:46
Alignment explanation
Indices: 70896188--70896461 Score: 316
Period size: 46 Copynumber: 6.0 Consensus size: 46
70896178 GCTCTCTGAT
** * *
70896188 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
70896234 ATGAAATGTGTAAGACCATGGTTGATAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
70896280 ACGAAACGAATAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** *
70896326 GGGAAATGAATAAGACCATGGTTGAAAGATACTGTGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
70896372 ATGAAAAGAATAAGACCATAGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
70896418 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
70896462 TCAAAGATAA
Statistics
Matches: 198, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 1 0.01
46 197 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:70896341 original size:92 final size:92
Alignment explanation
Indices: 70896198--70896456 Score: 365
Period size: 92 Copynumber: 2.8 Consensus size: 92
70896188 ATGAAATGTG
* * * * *
70896198 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGATAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAGA
* * *
70896263 TACCATGGCAACGTGATACGAAACGAA
66 TACTATGGCAACGTGACACGAAAAGAA
* * *
70896290 TAAGACCATGGTTGAAAGATACCATGGAAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAGA
* *
70896355 TACTGTGGCAACGTGACATGAAAAGAA
66 TACTATGGCAACGTGACACGAAAAGAA
* * *
70896382 TAAGACCATAGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAGA
*
70896447 CACTATGGCA
66 TACTATGGCA
70896457 TCATGTCAAA
Statistics
Matches: 146, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 146 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATGGTTGAAAGA
TACTATGGCAACGTGACACGAAAAGAA
Found at i:70896442 original size:138 final size:138
Alignment explanation
Indices: 70896198--70896446 Score: 356
Period size: 138 Copynumber: 1.8 Consensus size: 138
70896188 ATGAAATGTG
* * ** * *
70896198 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGATAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATAGTTGAAAGA
* * *
70896263 TACCATGGCAACGTGATACGAAACGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACGG
66 TACCATGGCAACATGACACGAAACGAATAAGACCATAGTTGAAAGATACCATGGAAACATGACGG
70896328 GAAATGAA
131 GAAATGAA
** *
70896336 TAAGACCATGGTTGAAAGATACTGTGGCAACGTGACATGAAAAGAATAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATAGTTGAAAGA
* *
70896401 TACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
66 TACCATGGCAACATGACACG-AAACGAATAAGACCATAGTTGAAAGA
70896447 CACTATGGCA
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
137 1 0.01
138 95 0.99
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATAGTTGAAAGA
TACCATGGCAACATGACACGAAACGAATAAGACCATAGTTGAAAGATACCATGGAAACATGACGG
GAAATGAA
Found at i:70896763 original size:16 final size:17
Alignment explanation
Indices: 70896742--70896774 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70896732 ATGATGAAAC
70896742 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
70896758 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
70896775 TACTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:70898029 original size:42 final size:43
Alignment explanation
Indices: 70897915--70898098 Score: 168
Period size: 43 Copynumber: 4.4 Consensus size: 43
70897905 TGTAAGACTG
*
70897915 TGTCTGGGACACAAGCCTCGATTGAGATTTACGTATAAGACCA
1 TGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCA
** * * **
70897958 TGTCTGGGACATTGGCATCGTATCT--GATTT-CGTGTAAGACTG
1 TGTCTGGGACACAGGCCTCG-AT-TGAGATTTACGTATAAGACCA
*
70898000 TGTCTGGGATACAGGCCTCGATTGAGATTTACGTATAAGACCA
1 TGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCA
* * *
70898043 TGTCTGGGACATC-GGCATCG--T-ATGATTT-CGTGTAAGACCC
1 TGTCTGGGACA-CAGGCCTCGATTGA-GATTTACGTATAAGACCA
*
70898083 TGTCTGGGACAGAGGC
1 TGTCTGGGACACAGGC
70898099 ATCAATATTG
Statistics
Matches: 114, Mismatches: 19, Indels: 19
0.75 0.12 0.12
Matches are distributed among these distances:
40 26 0.23
41 8 0.07
42 30 0.26
43 46 0.40
44 3 0.03
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (43 bp):
TGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCA
Found at i:70898045 original size:85 final size:83
Alignment explanation
Indices: 70897902--70898093 Score: 321
Period size: 85 Copynumber: 2.3 Consensus size: 83
70897892 GTCTGAGACA
70897902 TCGTGTAAGACTGTGTCTGGGACACAAGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACTGTGTCTGGGACACAAGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
*
70897967 CATTGGCATCGTATCTGATT
66 CATCGGCATCGTA--TGATT
* *
70897987 TCGTGTAAGACTGTGTCTGGGATACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACTGTGTCTGGGACACAAGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
70898052 CATCGGCATCGTATGATT
66 CATCGGCATCGTATGATT
**
70898070 TCGTGTAAGACCCTGTCTGGGACA
1 TCGTGTAAGACTGTGTCTGGGACA
70898094 GAGGCATCAA
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
83 26 0.26
85 75 0.74
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (83 bp):
TCGTGTAAGACTGTGTCTGGGACACAAGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
CATCGGCATCGTATGATT
Found at i:70898109 original size:85 final size:84
Alignment explanation
Indices: 70897902--70898149 Score: 304
Period size: 85 Copynumber: 3.0 Consensus size: 84
70897892 GTCTGAGACA
** * *
70897902 TCGTGTAAGACTGTGTCTGGGACACAAGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACGTATAAGACCATGTCTGGGA
*
70897967 CATTGGCATCGTATCTGATT
66 CATCGGCATCGTA-CTGATT
** * *
70897987 TCGTGTAAGACTGTGTCTGGGATACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACGTATAAGACCATGTCTGGGA
70898052 CATCGGCATCGTA-TGATT
66 CATCGGCATCGTACTGATT
* * * * *
70898070 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGA-A-TTACATGTAAGACCATGTCCGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATC--GATTGAGATTTACGTATAAGACCATGTCTGG
* *
70898133 GACGTCGGCATTGTACT
64 GACATCGGCATCGTACT
70898150 TGTTTATGAG
Statistics
Matches: 146, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
83 64 0.44
84 2 0.01
85 80 0.55
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACGTATAAGACCATGTCTGGGA
CATCGGCATCGTACTGATT
Found at i:70898135 original size:43 final size:40
Alignment explanation
Indices: 70897950--70898135 Score: 113
Period size: 43 Copynumber: 4.5 Consensus size: 40
70897940 GATTTACGTA
** * * *
70897950 TAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCGTG
1 TAAGACCATGTCTGGGACAGAGGCATC--ATATGATTACATG
** * * * * *
70897992 TAAGACTGTGTCTGGGATACAGGCCTCGAT-TGAGATTTACGTA
1 TAAGACCATGTCTGGGACAGAGGCATC-ATAT--GA-TTACATG
** * * *
70898035 TAAGACCATGTCTGGGACATCGGCATCGTATGATTTCGTG
1 TAAGACCATGTCTGGGACAGAGGCATCATATGATTACATG
*
70898075 TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATC-ATA-TG-ATTACATG
*
70898118 TAAGACCATGTCCGGGAC
1 TAAGACCATGTCTGGGAC
70898136 GTCGGCATTG
Statistics
Matches: 111, Mismatches: 26, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
40 30 0.27
41 6 0.05
42 26 0.23
43 49 0.44
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGACCATGTCTGGGACAGAGGCATCATATGATTACATG
Found at i:70900698 original size:38 final size:37
Alignment explanation
Indices: 70900639--70900810 Score: 133
Period size: 38 Copynumber: 4.7 Consensus size: 37
70900629 ACACCGGCAC
* *
70900639 AAGCCTACTAGGCACAAAGCCCGAATAACACTGGTACA
1 AAGCCTGCTAGGCACATAGCCCGAATAACAC-GGTACA
* *
70900677 AAGCTTGCTAGGCACATAGCCCGAATATCATCAGG-ACA
1 AAGCCTGCTAGGCACATAGCCCGAATAACA-C-GGTACA
* * *
70900715 AAGCCTGCTAGGCACAGAGCTCGAAT-A-A---TACC
1 AAGCCTGCTAGGCACATAGCCCGAATAACACGGTACA
* * * * **
70900747 AA-CTTGCTAGACACGTAGCCCGAATATCACCGACACA
1 AAGCCTGCTAGGCACATAGCCCGAATAACA-CGGTACA
*
70900784 AAGCCTGCTAGGCATATAGCCCGAATA
1 AAGCCTGCTAGGCACATAGCCCGAATA
70900811 TCACCACATT
Statistics
Matches: 103, Mismatches: 22, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
31 18 0.17
32 4 0.04
33 1 0.01
36 1 0.01
37 4 0.04
38 72 0.70
39 3 0.03
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.16
Consensus pattern (37 bp):
AAGCCTGCTAGGCACATAGCCCGAATAACACGGTACA
Found at i:70900809 original size:69 final size:69
Alignment explanation
Indices: 70900680--70900810 Score: 183
Period size: 69 Copynumber: 1.9 Consensus size: 69
70900670 TGGTACAAAG
* * * *
70900680 CTTGCTAGGCACATAGCCCGAATATCATCAGGACAAAGCCTGCTAGGCACAGAGCTCGAATAATA
1 CTTGCTAGACACATAGCCCGAATATCACCAGCACAAAGCCTGCTAGGCACAGAGCCCGAATAATA
70900745 CCAA
66 CCAA
* * *
70900749 CTTGCTAGACACGTAGCCCGAATATCACC-GACACAAAGCCTGCTAGGCATATAGCCCGAATA
1 CTTGCTAGACACATAGCCCGAATATCACCAG-CACAAAGCCTGCTAGGCACAGAGCCCGAATA
70900811 TCACCACATT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
68 1 0.02
69 53 0.98
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.18
Consensus pattern (69 bp):
CTTGCTAGACACATAGCCCGAATATCACCAGCACAAAGCCTGCTAGGCACAGAGCCCGAATAATA
CCAA
Found at i:70905554 original size:37 final size:37
Alignment explanation
Indices: 70905504--70905577 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
70905494 ATAAAGAGTA
70905504 TACAATAAGGAGTTTTCAATCATGGTACTTCTTTTGG
1 TACAATAAGGAGTTTTCAATCATGGTACTTCTTTTGG
70905541 TACAATAAGGAGTTTTCAATCATGGTACTTCTTTTGG
1 TACAATAAGGAGTTTTCAATCATGGTACTTCTTTTGG
70905578 ACTAACTCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (37 bp):
TACAATAAGGAGTTTTCAATCATGGTACTTCTTTTGG
Found at i:70907586 original size:19 final size:21
Alignment explanation
Indices: 70907552--70907597 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
70907542 TAACACAACC
*
70907552 TCAATTATTTTTAATTTT-TT
1 TCAATTATTCTTAATTTTGTT
70907572 TCAATTA-TCTTAATTTTGTT
1 TCAATTATTCTTAATTTTGTT
70907592 T-AATTA
1 TCAATTA
70907598 AGTTATCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (21 bp):
TCAATTATTCTTAATTTTGTT
Found at i:70907791 original size:14 final size:14
Alignment explanation
Indices: 70907765--70907800 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
70907755 AAAATAAATC
70907765 ATAAATATTTATATT
1 ATAAAT-TTTATATT
*
70907780 ATTAATTTTATATT
1 ATAAATTTTATATT
70907794 ATAAATT
1 ATAAATT
70907801 ATAAAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATAAATTTTATATT
Found at i:70909357 original size:15 final size:15
Alignment explanation
Indices: 70909337--70909368 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
70909327 TTTTCGCATG
70909337 GCTAAAGTTATACAT
1 GCTAAAGTTATACAT
70909352 GCTAAAGTTATACAT
1 GCTAAAGTTATACAT
70909367 GC
1 GC
70909369 CAAAAGTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (15 bp):
GCTAAAGTTATACAT
Found at i:70909376 original size:16 final size:15
Alignment explanation
Indices: 70909340--70909376 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
70909330 TCGCATGGCT
*
70909340 AAAGTTATACATGCT
1 AAAGTTATACATGCA
70909355 AAAGTTATACATGCCA
1 AAAGTTATACATG-CA
70909371 AAAGTT
1 AAAGTT
70909377 CAAAGATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (15 bp):
AAAGTTATACATGCA
Found at i:70913444 original size:14 final size:14
Alignment explanation
Indices: 70913425--70913451 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70913415 TAAATACTTG
70913425 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
70913439 ATTTGTTCTTAAT
1 ATTTGTTCTTAAT
70913452 GCTTGAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:70913900 original size:14 final size:13
Alignment explanation
Indices: 70913881--70913910 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
70913871 TTTAGTTTAA
70913881 TTAGTTAATTAAGT
1 TTAGTTAATT-AGT
70913895 TTAGTTAATTAGT
1 TTAGTTAATTAGT
70913908 TTA
1 TTA
70913911 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:70922083 original size:49 final size:49
Alignment explanation
Indices: 70922024--70922211 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
70922014 TGAGGTCACG
* **
70922024 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
70922073 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
*
70922124 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
70922173 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
70922212 GCTTCGGCTA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 74 0.62
50 4 0.03
51 41 0.34
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:70922197 original size:100 final size:100
Alignment explanation
Indices: 70922019--70922217 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 100
70922009 TATTGTGAGG
**
70922019 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
*
70922084 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * *
70922119 TCACTTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
*
70922184 AAGTGCAGGCTACTATGCGTACCAGATAGCTTCG
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCG
70922218 GCTACAAGTG
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:70924976 original size:16 final size:15
Alignment explanation
Indices: 70924927--70924976 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
70924917 GTGCTGTGAA
70924927 TTGGATTT-TTGTATC
1 TTGGATTTCTT-TATC
*
70924942 ATGGATTTCTTTATC
1 TTGGATTTCTTTATC
70924957 TTGGATTTCTTTATTC
1 TTGGATTTCTTTA-TC
70924973 TTGG
1 TTGG
70924977 CTTCTTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 23 0.74
16 8 0.26
ACGTcount: A:0.14, C:0.10, G:0.18, T:0.58
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:70926443 original size:17 final size:17
Alignment explanation
Indices: 70926401--70926446 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
70926391 GTGCAAAAGT
70926401 TGAG-TTTTAAATGTTA
1 TGAGTTTTTAAATGTTA
* *
70926417 -GAAGTGTTTAATTGTTA
1 TG-AGTTTTTAAATGTTA
70926434 TGAGTTTTTAAAT
1 TGAGTTTTTAAAT
70926447 CAAAGGTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
15 1 0.04
16 2 0.09
17 19 0.83
18 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (17 bp):
TGAGTTTTTAAATGTTA
Found at i:70927855 original size:51 final size:51
Alignment explanation
Indices: 70927725--70927912 Score: 195
Period size: 50 Copynumber: 3.7 Consensus size: 51
70927715 TATTGTGAGG
* * * ** *
70927725 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTGTT-GG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTAGATACTTAGA
* * *
70927774 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTT-GATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTAGAT-ACTTAGA
* * * * ** *
70927825 TCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTA-TTAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTAGATACTTAGA
70927875 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
70927913 CAGATAGCTT
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
49 37 0.33
50 40 0.35
51 36 0.32
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTAGATACTTAGA
Found at i:70927905 original size:101 final size:100
Alignment explanation
Indices: 70927725--70927912 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
70927715 TATTGTGAGG
* * *
70927725 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACT
70927790 AAGTGCAGGCTACTATGCGTACTTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACTTGATAACTTCGA
* ** *
70927825 TCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTT-GGTCACATGTGTAGTAC
70927890 TAAGTGCAGGCTACTATGCGTAC
65 TAAGTGCAGGCTACTATGCGTAC
70927913 CAGATAGCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
100 42 0.52
101 38 0.47
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTTGATAACTTCGA
Found at i:70927924 original size:101 final size:100
Alignment explanation
Indices: 70927725--70927925 Score: 303
Period size: 101 Copynumber: 2.0 Consensus size: 100
70927715 TATTGTGAGG
* * *
70927725 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACT
**
70927790 AAGTGCAGGCTACTATGCGTACTTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* ** *
70927825 TCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTT-GGTCACATGTGTAGTAC
*
70927890 TAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 TAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
70927926 CTACAAGTGT
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 42 0.47
101 48 0.53
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:70929705 original size:14 final size:13
Alignment explanation
Indices: 70929686--70929715 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
70929676 TTTAGTTTAA
70929686 TTAGTTAATTAAGT
1 TTAGTTAATT-AGT
70929700 TTAGTTAATTAGT
1 TTAGTTAATTAGT
70929713 TTA
1 TTA
70929716 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:70935131 original size:35 final size:35
Alignment explanation
Indices: 70935053--70935123 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
70935043 ATAAATAAGC
*
70935053 TCAATATAAACTCAAATGTAACCAAATACACATGT
1 TCAATATAAACTCAAATGTAACCAAATACACAAGT
* * * *
70935088 TCAATATAAATTCACATGTAACCGAATACTCAAGT
1 TCAATATAAACTCAAATGTAACCAAATACACAAGT
70935123 T
1 T
70935124 TGATATAAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (35 bp):
TCAATATAAACTCAAATGTAACCAAATACACAAGT
Found at i:70939873 original size:21 final size:23
Alignment explanation
Indices: 70939824--70939874 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
70939814 ATAATGTATC
*
70939824 ACATGTGGAATGGTGCCTAAATC
1 ACATGTGGAATGGTGCCTAAATA
**
70939847 ACATGTGGAAT-GTG-CTTTATA
1 ACATGTGGAATGGTGCCTAAATA
70939868 ACATGTG
1 ACATGTG
70939875 TTGGTAGTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.44
22 3 0.12
23 11 0.44
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (23 bp):
ACATGTGGAATGGTGCCTAAATA
Found at i:70943167 original size:56 final size:56
Alignment explanation
Indices: 70943074--70943183 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
70943064 ACTTATATAT
* *
70943074 ATATATATATTCAAGAATTTATTAAAGTGGTGTCACTCTTAATTTGATTGGTCAAC
1 ATATATATATTCAAGAATTTATTAAAGTAGTGCCACTCTTAATTTGATTGGTCAAC
* *
70943130 ATATATATATTTAAGAATTTATTAAGGTAGTGCCACTCTTAATTTGATTGGTCA
1 ATATATATATTCAAGAATTTATTAAAGTAGTGCCACTCTTAATTTGATTGGTCA
70943184 TCAACTCAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.42
Consensus pattern (56 bp):
ATATATATATTCAAGAATTTATTAAAGTAGTGCCACTCTTAATTTGATTGGTCAAC
Found at i:70944559 original size:27 final size:27
Alignment explanation
Indices: 70944524--70944576 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
70944514 AAAAAGTTAA
70944524 TTTTTTTAACGATATTAGCATGACAAT
1 TTTTTTTAACGATATTAGCATGACAAT
70944551 TTTTTTTAACGATATTAGCATGACAA
1 TTTTTTTAACGATATTAGCATGACAA
70944577 CTTATATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (27 bp):
TTTTTTTAACGATATTAGCATGACAAT
Found at i:70953180 original size:52 final size:52
Alignment explanation
Indices: 70953104--70953243 Score: 137
Period size: 52 Copynumber: 2.7 Consensus size: 52
70953094 ACATAAGTTC
* **
70953104 AAAAAAAATTTTGAGGTTTGGGAGAGGTAAAAGTTTTAGGAGAAAGCAA-AAAAG
1 AAAAAAAA-TTTGAGGTTTGGGAGAAGTAAAAGTTTT--GAGAAAAAAATAAAAG
70953158 AAAAAAAA-TTGAGGGTTT-GGAGAAGTAAAAGTTTTGAGAAAAAAATAAAAG
1 AAAAAAAATTTGA-GGTTTGGGAGAAGTAAAAGTTTTGAGAAAAAAATAAAAG
** *
70953209 AAAAATATTTTTAAGGGTTTGGG-GAA-TAAAAGTTT
1 AAAAA-AAATTTGA-GGTTTGGGAGAAGTAAAAGTTT
70953244 CGGGGAAAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
50 8 0.11
51 10 0.13
52 30 0.40
53 17 0.23
54 10 0.13
ACGTcount: A:0.49, C:0.01, G:0.25, T:0.26
Consensus pattern (52 bp):
AAAAAAAATTTGAGGTTTGGGAGAAGTAAAAGTTTTGAGAAAAAAATAAAAG
Done.