Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 207 of 311
Found at i:71286872 original size:29 final size:29
Alignment explanation
Indices: 71286838--71286896 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
71286828 AATTTCGAGT
*
71286838 GTTAAAATAAAAGAAGTAATAAATAAAGA
1 GTTAAAATAAAAGAAATAATAAATAAAGA
71286867 GTTAAAATAAAAGAAATAATAAATAAAGA
1 GTTAAAATAAAAGAAATAATAAATAAAGA
71286896 G
1 G
71286897 GCAAAATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.20
Consensus pattern (29 bp):
GTTAAAATAAAAGAAATAATAAATAAAGA
Found at i:71286902 original size:29 final size:29
Alignment explanation
Indices: 71286841--71286912 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
71286831 TTCGAGTGTT
* **
71286841 AAAATAAAAGAAGTAATAAATAAAGAGTT
1 AAAATAAAAGAAATAATAAATAAAGAGGC
71286870 AAAATAAAAGAAATAATAAATAAAGAGGC
1 AAAATAAAAGAAATAATAAATAAAGAGGC
* *
71286899 AAAATTAAATAAAT
1 AAAATAAAAGAAAT
71286913 GAGGGATTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.68, C:0.01, G:0.11, T:0.19
Consensus pattern (29 bp):
AAAATAAAAGAAATAATAAATAAAGAGGC
Found at i:71289148 original size:27 final size:26
Alignment explanation
Indices: 71289097--71289148 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
71289087 CCTAATACTA
* *
71289097 ATATTTATTAAAATTATTATTAAATT
1 ATATTTAATAAAATTATTATAAAATT
71289123 ATATTTAATAATAATTATGT-TAAAAT
1 ATATTTAATAA-AATTAT-TATAAAAT
71289149 ATGATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.45
27 11 0.50
28 1 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
ATATTTAATAAAATTATTATAAAATT
Found at i:71289352 original size:39 final size:40
Alignment explanation
Indices: 71289282--71289359 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
71289272 TTTCTTATAC
*
71289282 TATTACAACATCTATTCCATTCAATCAAACAAAAGAATTT
1 TATTACAACATCTATTCCATTCAATCAAACAAAACAATTT
* *
71289322 TATTACAAC-TCTGTTCCATTCCATTC-AACAAAACAATT
1 TATTACAACATCTATTCCATT-CAATCAAACAAAACAATT
71289360 GAATTACTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 21 0.62
40 13 0.38
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.33
Consensus pattern (40 bp):
TATTACAACATCTATTCCATTCAATCAAACAAAACAATTT
Found at i:71291154 original size:17 final size:17
Alignment explanation
Indices: 71291132--71291166 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
71291122 ATATATATAT
*
71291132 ATATATATGCTTGATGA
1 ATATATATACTTGATGA
71291149 ATATATATACTTGATGA
1 ATATATATACTTGATGA
71291166 A
1 A
71291167 AAAATCAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (17 bp):
ATATATATACTTGATGA
Found at i:71291157 original size:2 final size:2
Alignment explanation
Indices: 71291104--71291139 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
71291094 GTATCATGTA
71291104 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71291140 GCTTGATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71291462 original size:16 final size:16
Alignment explanation
Indices: 71291441--71291480 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
71291431 GATATAATTA
71291441 AATAAAAT-TTATTTT
1 AATAAAATATTATTTT
*
71291456 AATTAAAATATTATTTC
1 AA-TAAAATATTATTTT
71291473 AATAAAAT
1 AATAAAAT
71291481 GGTAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 12 0.55
17 8 0.36
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
AATAAAATATTATTTT
Found at i:71291790 original size:20 final size:20
Alignment explanation
Indices: 71291767--71291819 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
71291757 TCTTTTAACG
*
71291767 TTTTTTCTTTGGTTCTTACT
1 TTTTTTCTTTGATTCTTACT
71291787 TTTTTTCTTTGATTCTTACT
1 TTTTTTCTTTGATTCTTACT
* *
71291807 TTCTTTATTTGAT
1 TTTTTTCTTTGAT
71291820 GGAAGTTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.09, C:0.13, G:0.08, T:0.70
Consensus pattern (20 bp):
TTTTTTCTTTGATTCTTACT
Found at i:71294397 original size:38 final size:38
Alignment explanation
Indices: 71294354--71294430 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
71294344 TTTTAGTTGT
*
71294354 AGTTGATATTTTTATTAAAAGTAAAGACTAAATTGATA
1 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
71294392 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
1 AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
71294430 A
1 A
71294431 AAAATATAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (38 bp):
AGTTGACATTTTTATTAAAAGTAAAGACTAAATTGATA
Found at i:71304540 original size:58 final size:58
Alignment explanation
Indices: 71304450--71304565 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
71304440 GCAGCATGGG
71304450 GTAACCCTCGTTTACTGCACCTCCCTATTTATTAATCTAGTTTAAGTAACCTTGGTTA
1 GTAACCCTCGTTTACTGCACCTCCCTATTTATTAATCTAGTTTAAGTAACCTTGGTTA
71304508 GTAACCCTCGTTTACTGCACCTCCCTATTTATTAATCTAGTTTAAGTAACCTTGGTTA
1 GTAACCCTCGTTTACTGCACCTCCCTATTTATTAATCTAGTTTAAGTAACCTTGGTTA
71304566 TACACCAAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (58 bp):
GTAACCCTCGTTTACTGCACCTCCCTATTTATTAATCTAGTTTAAGTAACCTTGGTTA
Found at i:71304551 original size:30 final size:30
Alignment explanation
Indices: 71304459--71304551 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 30
71304449 GGTAACCCTC
71304459 GTTTACTGCACCTCCCTATTTATTAATCTA
1 GTTTACTGCACCTCCCTATTTATTAATCTA
* * ** * * *
71304489 GTTTA-AGTAACCT---TGGTTAGTAACCCTC
1 GTTTACTG-CACCTCCCTATTTATTAA-TCTA
71304517 GTTTACTGCACCTCCCTATTTATTAATCTA
1 GTTTACTGCACCTCCCTATTTATTAATCTA
71304547 GTTTA
1 GTTTA
71304552 AGTAACCTTG
Statistics
Matches: 43, Mismatches: 14, Indels: 12
0.62 0.20 0.17
Matches are distributed among these distances:
27 7 0.16
28 11 0.26
29 2 0.05
30 16 0.37
31 7 0.16
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (30 bp):
GTTTACTGCACCTCCCTATTTATTAATCTA
Found at i:71304951 original size:18 final size:17
Alignment explanation
Indices: 71304918--71304951 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
71304908 ATAAATGGGC
*
71304918 TAATTTAGACTTTATTA
1 TAATTTAGAATTTATTA
71304935 TAATTTAGAGATTTATT
1 TAATTTAGA-ATTTATT
71304952 TTATTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (17 bp):
TAATTTAGAATTTATTA
Found at i:71323183 original size:40 final size:40
Alignment explanation
Indices: 71323078--71323284 Score: 280
Period size: 40 Copynumber: 5.2 Consensus size: 40
71323068 GGATTGATAA
* * *
71323078 CCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
71323118 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71323157 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
71323197 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
71323238 -CGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
71323277 CC-GGCTAA
1 CCGGGCTAA
71323285 ACTCCGAAGG
Statistics
Matches: 151, Mismatches: 11, Indels: 11
0.87 0.06 0.06
Matches are distributed among these distances:
39 44 0.29
40 106 0.70
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:71323292 original size:119 final size:119
Alignment explanation
Indices: 71323074--71323296 Score: 312
Period size: 119 Copynumber: 1.9 Consensus size: 119
71323064 ATTCGGATTG
* *
71323074 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGCCCGAAGGCAT
* *
71323139 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
66 TTGAGCGAGTTACTATATCCGGGCTAACTCCCGAAGGTATTTGTGCGAGTTACT
*
71323193 ATAACCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAAT-CGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-AATCCGGGCTAAG-CCCGAAGG
*
71323256 CATTTGAGCTAG-TAGCTATATCC-GGCTAAACT-CCGAAGGTA
63 CATTTGAGCGAGTTA-CTATATCCGGGCT-AACTCCCGAAGGTA
71323297 CTTGGTTTGG
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
118 1 0.01
119 61 0.66
120 31 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGCCCGAAGGCAT
TTGAGCGAGTTACTATATCCGGGCTAACTCCCGAAGGTATTTGTGCGAGTTACT
Found at i:71327848 original size:23 final size:22
Alignment explanation
Indices: 71327796--71327848 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
71327786 TCCACGTCTT
*
71327796 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
71327818 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
71327841 TTTCTTTT
1 TTTCTTTT
71327849 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:71330191 original size:4 final size:4
Alignment explanation
Indices: 71330182--71330212 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
71330172 TTAAACTAAG
71330182 TAAA TAAA TAAA TAAA TAAA TAAA -AAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
71330213 AATAAAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:71338152 original size:40 final size:40
Alignment explanation
Indices: 71338073--71338154 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 40
71338063 ATGAAGATGT
* * *
71338073 TTAAAAATATTTATTTATTATTTTATATTTTTAATTTTTA
1 TTAAAAATACTTATTTATTATTTTAGATTTTTAAATTTTA
*
71338113 TTAAAAATACTT-TTTATTTTTATTAGA-TTTTAGAATTTTA
1 TTAAAAATACTTATTTATTATT-TTAGATTTTTA-AATTTTA
71338153 TT
1 TT
71338155 TTTAATTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 13 0.36
40 23 0.64
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.62
Consensus pattern (40 bp):
TTAAAAATACTTATTTATTATTTTAGATTTTTAAATTTTA
Found at i:71339939 original size:106 final size:106
Alignment explanation
Indices: 71339807--71340019 Score: 338
Period size: 106 Copynumber: 2.0 Consensus size: 106
71339797 GTAGGGGTAT
* * *
71339807 TTGATAAACCGTAATTTATACATATTTTTA-CACCATGTTTAACACATTTTATGGATGATTTCCC
1 TTGATAAACAGTAAATTATACATATTTTTATC-CCATGTTTAACACATTTAATGGATGATTTCCC
*
71339871 ATTAGAATTGGTGAATTCGATGCTCCTACTGCTTTAATTTCA
65 ATTAGAATTGGTGAATTCGATGCTCCTAATGCTTTAATTTCA
*** *
71339913 TTGATAAACAGTAAATTATACATATTTTTATCCCATGTTTAGTGCATTTAATGGATGATTTCTCA
1 TTGATAAACAGTAAATTATACATATTTTTATCCCATGTTTAACACATTTAATGGATGATTTCCCA
71339978 TTAGAATTGGTGAATTCGATGCTCCTAATGCTTTAATTTCA
66 TTAGAATTGGTGAATTCGATGCTCCTAATGCTTTAATTTCA
71340019 T
1 T
71340020 GTTTTATACT
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
106 97 0.99
107 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (106 bp):
TTGATAAACAGTAAATTATACATATTTTTATCCCATGTTTAACACATTTAATGGATGATTTCCCA
TTAGAATTGGTGAATTCGATGCTCCTAATGCTTTAATTTCA
Found at i:71340589 original size:14 final size:13
Alignment explanation
Indices: 71340569--71340600 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
71340559 AATATTTAAC
71340569 TTGTTCTTAATTA
1 TTGTTCTTAATTA
71340582 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
71340596 TTGTT
1 TTGTT
71340601 TTGGTATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:71349507 original size:12 final size:13
Alignment explanation
Indices: 71349482--71349510 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
71349472 ATCAATAAGT
71349482 TAAAAAACCAAAA
1 TAAAAAACCAAAA
71349495 TAAAAAACC-AAA
1 TAAAAAACCAAAA
71349507 TAAA
1 TAAA
71349511 GGATACAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.76, C:0.14, G:0.00, T:0.10
Consensus pattern (13 bp):
TAAAAAACCAAAA
Found at i:71362149 original size:24 final size:24
Alignment explanation
Indices: 71362099--71362152 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
71362089 AATCGAATTT
*
71362099 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
71362123 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
71362147 GCACAC
1 GCACAC
71362153 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:71368361 original size:47 final size:47
Alignment explanation
Indices: 71368293--71368385 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
71368283 AAGAAGAAGA
* *
71368293 GGCCAAAGTGAATACCTGCAAAGGGCGCTTTGAGAC-CTAATAAAAAG
1 GGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTC-AATAAAAAG
*
71368340 GGCCAAAGTGAAAACCCGCAAAGGGCGTTTTGAGACTCAATAAAAA
1 GGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAAAAA
71368386 TGAAAAAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 41 0.98
48 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (47 bp):
GGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAAAAAG
Found at i:71369657 original size:43 final size:45
Alignment explanation
Indices: 71369602--71369697 Score: 124
Period size: 43 Copynumber: 2.2 Consensus size: 45
71369592 AGCCACCAGC
* * **
71369602 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AG-T
1 CTTATCTCTCTGAGATAGCAAGAAAGCAGACTGAAGAATGAAGAT
* *
71369645 CTTATCTTTCTGAGATAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCTGAGATAGCAAGAAAGCAGACTGAAGAATGAAGAT
71369690 CTTATCTC
1 CTTATCTC
71369698 CCTAAGCAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 34 0.77
44 2 0.05
45 8 0.18
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (45 bp):
CTTATCTCTCTGAGATAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:71369816 original size:170 final size:172
Alignment explanation
Indices: 71369509--71370118 Score: 726
Period size: 170 Copynumber: 3.5 Consensus size: 172
71369499 TGGTGAAGTC
** * * * ** * * *
71369509 AGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTAAAGATGATGAATCTTATCTCCATGTGTC
1 AGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATT
* *
71369574 GGCAATGAAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
65 GGCAATGGAGCAGATTTAAG---TCAGCC-TATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * *
71369639 ATGAGTCTTATCTTTCTGAGATAGCAAGAAAGCAGACTGAAGATTGA
126 TTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
*
71369686 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATTG
*
71369751 GCAATGGAGCAGATTTAAGTCA-CC-ATCTCTCTGATGTAGCAAGAGAGCAGGTTGAAGATTGAG
66 GCAATGGAGCAGATTTAAGTCAGCCTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAG
* *
71369814 TCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGTTTGA
131 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
71369856 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATTG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATTG
* ** * * * *
71369921 TCAATGGAGCATTTTTGCCACT-AGCCTTATCTCTCTGAGGTAGGAAGAGGGCAGGTTGAAGTAA
66 GCAATGGAGCAGATTT--AAGTCAGCC-TATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG--A
* *
71369985 TTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAAGATTGA
126 TTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * * ** **
71370031 GGATCTTGTTTCCCTTAAGCAGTTGTGGAACA-AGTCGAAGACAGCAAATCTTATCTCCATGTAT
1 AGATCTTATCTCCC-TAAGCAGTAGTGGAGCAGA-TCGAAGATGGTGAATCTTATCTCCATGTAT
*
71370095 TGGCAATGGAGCATATTTAAGTCA
64 TGGCAATGGAGCAGATTTAAGTCA
71370119 TCAGCCTTGT
Statistics
Matches: 378, Mismatches: 45, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
170 151 0.40
171 1 0.00
172 6 0.02
173 2 0.01
174 32 0.08
175 52 0.14
176 119 0.31
177 15 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (172 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATTG
GCAATGGAGCAGATTTAAGTCAGCCTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAG
TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:71369834 original size:43 final size:45
Alignment explanation
Indices: 71369786--71369873 Score: 110
Period size: 43 Copynumber: 2.0 Consensus size: 45
71369776 TCTCTCTGAT
** *
71369786 GTAGCAA-GAGAGCAGGTTGAAGATTG-AG-TCTTATCTTCCTAAG
1 GTAGCAAGGA-AGCAGACTGAAGATTGAAGATCTTATCTCCCTAAG
*
71369829 GTAGCAAGGAAGCAGACTGAAGTTTGAAGATCTTATCTCCCTAAG
1 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAG
71369874 CAGTAGTGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 20 0.53
44 4 0.11
45 14 0.37
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (45 bp):
GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAG
Found at i:71374895 original size:15 final size:15
Alignment explanation
Indices: 71374875--71374905 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71374865 ATAGTTGGGC
*
71374875 TATTGGGCTTTAGGT
1 TATTGGGCATTAGGT
71374890 TATTGGGCATTAGGT
1 TATTGGGCATTAGGT
71374905 T
1 T
71374906 TAGCAGATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.32, T:0.45
Consensus pattern (15 bp):
TATTGGGCATTAGGT
Found at i:71385339 original size:4 final size:4
Alignment explanation
Indices: 71385330--71385354 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
71385320 GTTCATAGTT
71385330 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
71385355 GTGTGTGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:71388799 original size:15 final size:15
Alignment explanation
Indices: 71388779--71388808 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71388769 AATAAGCCAT
71388779 ATTATGTATATAAAC
1 ATTATGTATATAAAC
71388794 ATTATGTATATAAAC
1 ATTATGTATATAAAC
71388809 CTACAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
ATTATGTATATAAAC
Found at i:71390858 original size:21 final size:21
Alignment explanation
Indices: 71390829--71390871 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
71390819 AAAACACGCG
71390829 AACAAAAGCTCATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
* * *
71390850 AACAGAAGCTCGTGAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
71390871 A
1 A
71390872 TCCACCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.14
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTA
Found at i:71392994 original size:14 final size:14
Alignment explanation
Indices: 71392975--71393005 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
71392965 TTGTGTGTTC
71392975 TTTATTTTATTTTA
1 TTTATTTTATTTTA
*
71392989 TTTATTTTCTTTTA
1 TTTATTTTATTTTA
71393003 TTT
1 TTT
71393006 TTCACAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:71397439 original size:5 final size:5
Alignment explanation
Indices: 71397429--71397460 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
71397419 TTGTGTGTTC
71397429 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
71397461 TCACAAACCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:71397443 original size:9 final size:9
Alignment explanation
Indices: 71397429--71397459 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
71397419 TTGTGTGTTC
71397429 TTTATTTTA
1 TTTATTTTA
71397438 TTTATTTTA
1 TTTATTTTA
71397447 TTTTATTTTA
1 -TTTATTTTA
71397457 TTT
1 TTT
71397460 TTCACAAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:71398247 original size:41 final size:41
Alignment explanation
Indices: 71398161--71398248 Score: 97
Period size: 41 Copynumber: 2.1 Consensus size: 41
71398151 AAATGATACT
* * *
71398161 TTGCGGCGTTTTTCTCATAAACGCCACTACTGTTTGACCTT
1 TTGCGGCGTTTTTATCATAAACGCCACTACTCTTTGACCTA
* ** *
71398202 TTGCGGCGTTTTTATCATAAATGCGGCTATTACTTT-ACCTA
1 TTGCGGCGTTTTTATCATAAACGCCACTACT-CTTTGACCTA
71398243 TTGCGG
1 TTGCGG
71398249 TATTTTTTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 36 0.92
42 3 0.08
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (41 bp):
TTGCGGCGTTTTTATCATAAACGCCACTACTCTTTGACCTA
Found at i:71399187 original size:4 final size:4
Alignment explanation
Indices: 71399178--71399217 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
71399168 GTTCATAGTT
71399178 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
71399218 TATAGAGAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:71401927 original size:95 final size:95
Alignment explanation
Indices: 71401761--71401955 Score: 365
Period size: 95 Copynumber: 2.1 Consensus size: 95
71401751 ATGTGATTGG
71401761 GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
1 GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
71401826 TATGTGAGCAACACCGTGTAGCTTCGTCAT
66 TATGTGAGCAACACCGTGTAGCTTCGTCAT
*
71401856 GTACTGGTCCGTATGTCCTACTGGTGGCTGAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
1 GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
*
71401921 TGTGTGAGCAACACCGTGTAGCTTCGTCAT
66 TATGTGAGCAACACCGTGTAGCTTCGTCAT
71401951 G-ACTG
1 GTACTG
71401956 TCAGCTTGTG
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
94 4 0.04
95 94 0.96
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (95 bp):
GTACTGGTCCGTATGTCCTACTGGTGGCTAAGTTATCCGGCATGTGCTGCGGATTCTCGTCAGCT
TATGTGAGCAACACCGTGTAGCTTCGTCAT
Found at i:71402637 original size:2 final size:2
Alignment explanation
Indices: 71402632--71402664 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
71402622 TGCATATATA
*
71402632 TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
71402665 AAATGCCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:71405901 original size:21 final size:21
Alignment explanation
Indices: 71405875--71405923 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
71405865 CATGGTGTTG
71405875 AAGAAGCCACGTGGGAACCCA
1 AAGAAGCCACGTGGGAACCCA
* **
71405896 AAGAAGCCATGTGGGAACCTG
1 AAGAAGCCACGTGGGAACCCA
71405917 AAGAAGC
1 AAGAAGC
71405924 TATGAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.31, T:0.08
Consensus pattern (21 bp):
AAGAAGCCACGTGGGAACCCA
Found at i:71407934 original size:18 final size:18
Alignment explanation
Indices: 71407908--71408002 Score: 70
Period size: 18 Copynumber: 5.3 Consensus size: 18
71407898 AATTGATCGG
* *
71407908 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
*
71407926 TTATTCAGTAA-AATTAGA
1 TTATTCAGTAACAATCA-A
*
71407944 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAA
* *
71407961 GTTATTTAGTAACAGTC-A
1 -TTATTCAGTAACAATCAA
* *
71407979 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAA
71407998 TTATT
1 TTATT
71408003 TTATACCTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
17 16 0.26
18 31 0.51
19 14 0.23
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:71408251 original size:45 final size:44
Alignment explanation
Indices: 71408186--71408278 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 44
71408176 GTAATAGTAT
71408186 AGTAACAATATCGACACACAAAGTGCCGAATCAGTAACGGTAAC
1 AGTAACAATATCGACACACAAAGTGCCGAATCAGTAACGGTAAC
*
71408230 AGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
1 AGTAACAATA-TCGACACACAAAGTGCCGAATCAGTAACGGTAAC
71408275 AGTA
1 AGTA
71408279 GCGGTAACAG
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 10 0.21
45 37 0.79
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (44 bp):
AGTAACAATATCGACACACAAAGTGCCGAATCAGTAACGGTAAC
Found at i:71409838 original size:5 final size:5
Alignment explanation
Indices: 71409830--71409860 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
71409820 TTTAGTTTAT
71409830 ATATA ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA A
71409861 AACATAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:71409893 original size:8 final size:8
Alignment explanation
Indices: 71409880--71409916 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
71409870 TATCTTTATT
71409880 ATATAATA
1 ATATAATA
71409888 ATATAATA
1 ATATAATA
71409896 ATATAATA
1 ATATAATA
71409904 ATATAATA
1 ATATAATA
71409912 ATATA
1 ATATA
71409917 CTAAACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:71414020 original size:18 final size:18
Alignment explanation
Indices: 71413986--71414173 Score: 76
Period size: 18 Copynumber: 10.1 Consensus size: 18
71413976 TCATTAACTC
* *
71413986 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
71414003 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
* **
71414021 TCGGTAACAATCAAATAT
1 TCAGTAACAATCAGTTAT
* * *
71414039 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
*
71414057 TCAGTATCGATCAATTGATCGGTTAT
1 TCAGTA---A-C-A---ATCAGTTAT
* * *
71414083 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
* *
71414101 TCAGTAA-AATTAGATAT
1 TCAGTAACAATCAGTTAT
*
71414118 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
* * *
71414137 TTAGTAATAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
* *
71414155 TCAGTGACAATTAGTTAT
1 TCAGTAACAATCAGTTAT
71414173 T
1 T
71414174 TTAAACCTTT
Statistics
Matches: 121, Mismatches: 37, Indels: 25
0.66 0.20 0.14
Matches are distributed among these distances:
17 19 0.16
18 70 0.58
19 15 0.12
21 2 0.02
22 1 0.01
23 2 0.02
26 12 0.10
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:71414142 original size:19 final size:17
Alignment explanation
Indices: 71414097--71414143 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
71414087 TAACAGTCAA
71414097 TTATTCAGTAAAATTAG
1 TTATTCAGTAAAATTAG
*
71414114 ATATTCAGTAACAATTAAG
1 TTATTCAGTAA-AATT-AG
*
71414133 TTATTTAGTAA
1 TTATTCAGTAA
71414144 TAGTCATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.40
18 4 0.16
19 11 0.44
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (17 bp):
TTATTCAGTAAAATTAG
Found at i:71414416 original size:42 final size:44
Alignment explanation
Indices: 71414357--71414447 Score: 132
Period size: 42 Copynumber: 2.1 Consensus size: 44
71414347 GTAACAGTAT
*
71414357 AGTAACAATATCCGACACACAAAGTGTCGAATC-G-ACGGTAAC
1 AGTAACAATATCCGACACACAAAGTGCCGAATCGGAACGGTAAC
* *
71414399 AGTAATAATATTCGACACACAAAGTGCCGAATCGGTAACGGTAAC
1 AGTAACAATATCCGACACACAAAGTGCCGAATCGG-AACGGTAAC
71414444 AGTA
1 AGTA
71414448 GCGGTAATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 30 0.70
43 1 0.02
45 12 0.28
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.19
Consensus pattern (44 bp):
AGTAACAATATCCGACACACAAAGTGCCGAATCGGAACGGTAAC
Found at i:71416005 original size:5 final size:5
Alignment explanation
Indices: 71415997--71416022 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
71415987 TTTAGTTTAT
71415997 ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA A
71416023 AACAATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:71416049 original size:8 final size:8
Alignment explanation
Indices: 71416036--71416072 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
71416026 AATCTTTATT
71416036 ATATAATA
1 ATATAATA
71416044 ATATAATA
1 ATATAATA
71416052 ATATAATA
1 ATATAATA
71416060 ATATAATA
1 ATATAATA
71416068 ATATA
1 ATATA
71416073 CTAAACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:71421699 original size:22 final size:22
Alignment explanation
Indices: 71421660--71421704 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
71421650 TTTTAACATA
* *
71421660 TTAATAATTTTATACATAGATT
1 TTAATAAATTGATACATAGATT
* *
71421682 TTAATAAATTGATTCATATATT
1 TTAATAAATTGATACATAGATT
71421704 T
1 T
71421705 CATATTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAATAAATTGATACATAGATT
Found at i:71433206 original size:16 final size:15
Alignment explanation
Indices: 71433184--71433230 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 15
71433174 AGTACGCGGG
71433184 TGAAAATAATATATT
1 TGAAAATAATATATT
71433199 TAGAAAATAGTGATATATT
1 T-GAAAATA---ATATATT
71433218 T-AAAATAATATAT
1 TGAAAATAATATAT
71433231 AATAAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
14 6 0.21
15 1 0.04
16 7 0.25
17 6 0.21
19 8 0.29
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (15 bp):
TGAAAATAATATATT
Found at i:71435466 original size:42 final size:42
Alignment explanation
Indices: 71435404--71435483 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
71435394 TAAAATCAAC
71435404 CCAACCCCATGCAATACAACATACAATACATGACATGCTAAA
1 CCAACCCCATGCAATACAACATACAATACATGACATGCTAAA
*
71435446 CCAACCCCATGCAATGCAACATACAATACATGACATGC
1 CCAACCCCATGCAATACAACATACAATACATGACATGC
71435484 CATCTCATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.42, C:0.33, G:0.09, T:0.16
Consensus pattern (42 bp):
CCAACCCCATGCAATACAACATACAATACATGACATGCTAAA
Found at i:71435483 original size:21 final size:21
Alignment explanation
Indices: 71435420--71435483 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
71435410 CCATGCAATA
71435420 CAACATACAATACATGACATG
1 CAACATACAATACATGACATG
* **
71435441 CTAA-A-CCAACCCCATG-CAATG
1 C-AACATACAA-TACATGAC-ATG
71435462 CAACATACAATACATGACATG
1 CAACATACAATACATGACATG
71435483 C
1 C
71435484 CATCTCATGA
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
20 6 0.19
21 19 0.61
22 6 0.19
ACGTcount: A:0.44, C:0.30, G:0.09, T:0.17
Consensus pattern (21 bp):
CAACATACAATACATGACATG
Found at i:71443361 original size:12 final size:12
Alignment explanation
Indices: 71443346--71443372 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71443336 AAGATGGAGG
71443346 AAAAGAAAAGAA
1 AAAAGAAAAGAA
71443358 AAAAGAAAAGAA
1 AAAAGAAAAGAA
71443370 AAA
1 AAA
71443373 CTGGAGCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:71444136 original size:18 final size:19
Alignment explanation
Indices: 71444101--71444137 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
71444091 TATATTATTT
*
71444101 TTAATAATTTTTTGACATA
1 TTAATAATTTTATGACATA
71444120 TTAATAATTTTAT-ACATA
1 TTAATAATTTTATGACATA
71444138 GATTTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (19 bp):
TTAATAATTTTATGACATA
Found at i:71444159 original size:22 final size:22
Alignment explanation
Indices: 71444120--71444164 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
71444110 TTTTGACATA
* *
71444120 TTAATAATTTTATACATAGATT
1 TTAATAAATTGATACATAGATT
* *
71444142 TTAATAAATTGATTCATATATT
1 TTAATAAATTGATACATAGATT
71444164 T
1 T
71444165 CATATTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAATAAATTGATACATAGATT
Found at i:71445206 original size:14 final size:14
Alignment explanation
Indices: 71445189--71445216 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
71445179 TAGCTAAAAT
71445189 AACATTAGATGTAC
1 AACATTAGATGTAC
71445203 AACATTAGATGTAC
1 AACATTAGATGTAC
71445217 CATCGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
AACATTAGATGTAC
Found at i:71454514 original size:11 final size:11
Alignment explanation
Indices: 71454498--71454523 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
71454488 CGAAGCCCAC
71454498 ATCACAATAAT
1 ATCACAATAAT
71454509 ATCACAATAAT
1 ATCACAATAAT
71454520 ATCA
1 ATCA
71454524 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:71455036 original size:27 final size:27
Alignment explanation
Indices: 71455017--71455216 Score: 224
Period size: 27 Copynumber: 7.4 Consensus size: 27
71455007 TTTTACACTA
*
71455017 CAAGGGTATTTTAATAATTTTACAAAT
1 CAAGGGTATTTCAATAATTTTACAAAT
* *
71455044 CAGGGGTGTTTCAATAATTTTACAAAT
1 CAAGGGTATTTCAATAATTTTACAAAT
* * *
71455071 TAAGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTCAATAATTTTACAAAT
* *
71455098 CGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTCAATAATTTTACAAAT
*
71455125 CGAGGGTATTTCAATAA--TTACACAAT
1 CAAGGGTATTTCAATAATTTTACA-AAT
* **
71455151 CGAGGGTATTTTGATAATTTTACAAAT
1 CAAGGGTATTTCAATAATTTTACAAAT
** * *
71455178 CGGGGGTATTTCGATAATTTTATAAAT
1 CAAGGGTATTTCAATAATTTTACAAAT
*
71455205 CAAGGGTGTTTC
1 CAAGGGTATTTC
71455217 GGTAATTTCT
Statistics
Matches: 150, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
25 5 0.03
26 18 0.12
27 122 0.81
28 5 0.03
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCAATAATTTTACAAAT
Found at i:71455049 original size:54 final size:54
Alignment explanation
Indices: 71454991--71455224 Score: 210
Period size: 54 Copynumber: 4.4 Consensus size: 54
71454981 TTTACCCTAT
* * * *
71454991 AGGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTTAATAATTTTACAAATC
1 AGGGGTATTTCAGTAATTTTACAAAT-CAAGGGTATTTTAATAATTTTACAAATC
* * * *
71455045 AGGGGTGTTTCAATAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAAATC
1 AGGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTAATAATTTTACAAATC
* *
71455099 -GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAATAA--TTACACAATC
1 AG-GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTAATAATTTTACA-AATC
* ** ** *
71455152 -GAGGGTATTT-TGATAATTTTACAAATCGGGGGTATTTCGATAATTTTATAAATC
1 AG-GGGTATTTCAG-TAATTTTACAAATCAAGGGTATTTTAATAATTTTACAAATC
* * *
71455206 AAGGGTGTTTCGGTAATTT
1 AGGGGTATTTCAGTAATTT
71455225 CTCTTTATTA
Statistics
Matches: 151, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
52 6 0.04
53 43 0.28
54 95 0.63
55 7 0.05
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTAATAATTTTACAAATC
Found at i:71455223 original size:80 final size:78
Alignment explanation
Indices: 71455019--71455216 Score: 254
Period size: 80 Copynumber: 2.5 Consensus size: 78
71455009 TTACACTACA
* * *
71455019 AGGGTATTTTAATAATTTTACAAATCAGGGGTGTTTCAATAATTTTACAAATTAAGGGTATTTTA
1 AGGGTA-TTTCATAATTTTACAAATCAAGGGTGTTTCAATAA--TTACAAATCAAGGGTATTTTA
71455084 GTAATTTTACAAATCG
63 GTAATTTTACAAATCG
* * *
71455100 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAATAATTACACAATCGAGGGTATTTT-G
1 AGGGTATTTCA-TAATTTTACAAATCAAGGGTGTTTCAATAATTACA-AATCAAGGGTATTTTAG
71455164 ATAATTTTACAAATCG
64 -TAATTTTACAAATCG
* *
71455180 GGGGTATTTCGATAATTTTATAAATCAAGGGTGTTTC
1 AGGGTATTTC-ATAATTTTACAAATCAAGGGTGTTTC
71455217 GGTAATTTCT
Statistics
Matches: 103, Mismatches: 10, Indels: 9
0.84 0.08 0.07
Matches are distributed among these distances:
79 6 0.06
80 63 0.61
81 34 0.33
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (78 bp):
AGGGTATTTCATAATTTTACAAATCAAGGGTGTTTCAATAATTACAAATCAAGGGTATTTTAGTA
ATTTTACAAATCG
Found at i:71458236 original size:48 final size:48
Alignment explanation
Indices: 71458184--71458278 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
71458174 AGGTTTATCA
* * *
71458184 TTTTTTTGATTTAAGCAATGAAAATGATACTTAAGTTTTTGGTCATCC
1 TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATCC
71458232 TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATC
1 TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATC
71458279 GATTCAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (48 bp):
TTTTTTTGATTTAAGAAATGAAAAGGATACTCAAGTTTTTGGTCATCC
Found at i:71460252 original size:17 final size:18
Alignment explanation
Indices: 71460219--71460254 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
71460209 CATGTGTGCA
71460219 AATAATAAACATATATTT
1 AATAATAAACATATATTT
*
71460237 AATAATAAA-TTATATTT
1 AATAATAAACATATATTT
71460254 A
1 A
71460255 CTTATTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
AATAATAAACATATATTT
Found at i:71460349 original size:19 final size:21
Alignment explanation
Indices: 71460304--71460352 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
71460294 ATATTATATA
*
71460304 AAACATAAAGAATAAATAAAGG
1 AAACA-AAAGAATAAAGAAAGG
71460326 AAACAAAAGAA-AAAGAAA-G
1 AAACAAAAGAATAAAGAAAGG
71460345 AAACAAAA
1 AAACAAAA
71460353 ATGGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 9 0.35
20 6 0.23
21 6 0.23
22 5 0.19
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (21 bp):
AAACAAAAGAATAAAGAAAGG
Found at i:71466314 original size:18 final size:18
Alignment explanation
Indices: 71466291--71466360 Score: 113
Period size: 18 Copynumber: 3.9 Consensus size: 18
71466281 TACGACCGTT
*
71466291 TACTATTCACGTATATGG
1 TACTATTCACGTATACGG
*
71466309 TACTATTCACGTATACGA
1 TACTATTCACGTATACGG
71466327 TACTATTCACGTATACGG
1 TACTATTCACGTATACGG
*
71466345 TACTGTTCACGTATAC
1 TACTATTCACGTATAC
71466361 AGTAGTTGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (18 bp):
TACTATTCACGTATACGG
Found at i:71473526 original size:3 final size:3
Alignment explanation
Indices: 71473518--71473572 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
71473508 CAACTATACT
71473518 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
71473566 ATA ATA A
1 ATA ATA A
71473573 GAGTAAACTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:71483780 original size:248 final size:248
Alignment explanation
Indices: 71483342--71483834 Score: 785
Period size: 248 Copynumber: 2.0 Consensus size: 248
71483332 TCTTCTCATG
*
71483342 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTCACTCGTAGT
1 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTCACTCGTAGC
* * * *
71483407 ATGCGATATCATTTTCCTAATTTTAAACCTGTCTTTAGTAGATGTTTTTGCCTACTTGATTCATA
66 ATGCGATATCATCTTCCTAATTCTAAACCAGTCTTTAGTAGATGTTTCTGCCTACTTGATTCATA
* *
71483472 GATACATAAAATCTTGTTCTTGGTTCTTCCTTGAGTATTTTGTCCCGGAAAGAATTTTAGATAGC
131 AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCGGAAAGAATTTTAGATAGC
71483537 CAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGAGCT
196 CAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGAGCT
** *
71483590 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTTGGTATTCAAC-CGTGG
1 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTC-ACTCGTAG
71483654 CATGCGATATCATCTTCCTAATTCTAAA-CAGCTCTTTAGTAGATGTTTCTGCCTACTTGATTCA
65 CATGCGATATCATCTTCCTAATTCTAAACCAG-TCTTTAGTAGATGTTTCTGCCTACTTGATTCA
* * *
71483718 TAAATACATAAAATCTTGTT-TGTGGTTCTTCATTGTGTGTTTTGTCCCGGTAAGAATTTTAGAT
129 TAAATACATAAAATCTTGTTCT-TGGTTCTTCATTGAGTATTTTGTCCCGGAAAGAATTTTAGAT
* * * *
71483782 AGCCGATGGAAGTTTTTTGGGAAATAAGGTGTGAGACGAAAAAGTATCATGGA
193 AGCCAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGA
71483835 AGCCCTAGGA
Statistics
Matches: 225, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
247 3 0.01
248 220 0.98
249 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (248 bp):
GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCAGTATTCACTCGTAGC
ATGCGATATCATCTTCCTAATTCTAAACCAGTCTTTAGTAGATGTTTCTGCCTACTTGATTCATA
AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCGGAAAGAATTTTAGATAGC
CAATGGAAATTTTCTGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGAGCT
Found at i:71492065 original size:22 final size:22
Alignment explanation
Indices: 71492011--71492068 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 22
71492001 ATTAAGTTTC
* *
71492011 TCCTCTTTTCTTTCTTTTCTGAT
1 TCCTCTCTT-TTTCTTCTCTGAT
71492034 TCTCTCTCTTTTTCTTCTCTTG-T
1 TC-CTCTCTTTTTCTTCTC-TGAT
71492057 TCCTCTCTTTTT
1 TCCTCTCTTTTT
71492069 TGGTTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 10 0.32
23 13 0.42
24 8 0.26
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (22 bp):
TCCTCTCTTTTTCTTCTCTGAT
Found at i:71503553 original size:53 final size:52
Alignment explanation
Indices: 71503496--71503630 Score: 150
Period size: 52 Copynumber: 2.6 Consensus size: 52
71503486 TATTTCAGAT
71503496 ATGGTCTTATACGGAGGCACATAATCACATCATACCGATGCCATAGCCCAACC
1 ATGGTCTTATACGGAGGCACAT-ATCACATCATACCGATGCCATAGCCCAACC
* * * * * * *
71503549 ATGGTCTTACAC-GATAGTACATATCACAAT-GTATCGATGCCATAGCCCAGCT
1 ATGGTCTTATACGGA-GGCACATATCAC-ATCATACCGATGCCATAGCCCAACC
71503601 ATGGTCTTATACGG-GCGCACATATCACATC
1 ATGGTCTTATACGGAG-GCACATATCACATC
71503631 TATTTCGTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
51 2 0.03
52 46 0.69
53 19 0.28
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (52 bp):
ATGGTCTTATACGGAGGCACATATCACATCATACCGATGCCATAGCCCAACC
Found at i:71503623 original size:52 final size:52
Alignment explanation
Indices: 71503464--71503628 Score: 147
Period size: 52 Copynumber: 3.1 Consensus size: 52
71503454 TCTTACACGG
* ***
71503464 ATCACATATTATACCGATGCCATATTTCAGA-TATGGTCTTATACGGAGGCACAT
1 ATCACA-ATCATACCGATGCCATAGCCCA-ACTATGGTCTTATACGG-GGCACAT
* * ** *
71503518 AATCAC-ATCATACCGATGCCATAGCCCAACCATGGTCTTACACGATAGTACAT
1 -ATCACAATCATACCGATGCCATAGCCCAACTATGGTCTTATACG-GGGCACAT
* * *
71503571 ATCACAAT-GTATCGATGCCATAGCCCAGCTATGGTCTTATACGGGCGCACAT
1 ATCACAATCATACCGATGCCATAGCCCAACTATGGTCTTATACGGG-GCACAT
71503623 ATCACA
1 ATCACA
71503629 TCTATTTCGT
Statistics
Matches: 89, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
52 47 0.53
53 37 0.42
55 5 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (52 bp):
ATCACAATCATACCGATGCCATAGCCCAACTATGGTCTTATACGGGGCACAT
Found at i:71506131 original size:17 final size:19
Alignment explanation
Indices: 71506087--71506125 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
71506077 TGAATTAAGG
71506087 AAGGTTAGAGTTTTCTCCA
1 AAGGTTAGAGTTTTCTCCA
71506106 AAGGTTAGAGTTTTCTCCA
1 AAGGTTAGAGTTTTCTCCA
71506125 A
1 A
71506126 GTTAGACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (19 bp):
AAGGTTAGAGTTTTCTCCA
Found at i:71508061 original size:40 final size:40
Alignment explanation
Indices: 71508003--71508169 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
71507993 AAGTGCTTTT
* *
71508003 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTATCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* **
71508043 TGAATGCACATACATGCCCATGTTTGTACTTTAGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
*
71508083 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
*
71508123 TGAATGCACATACATGCCGCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
71508163 TTGAATG
1 -TGAATG
71508170 TATTATAATG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
40 109 0.95
41 6 0.05
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:71508104 original size:20 final size:20
Alignment explanation
Indices: 71508003--71508140 Score: 57
Period size: 20 Copynumber: 6.9 Consensus size: 20
71507993 AAGTGCTTTT
71508003 TGAATGCACATACGTGCCCC
1 TGAATGCACATACGTGCCCC
** * * **
71508023 TGTTTGTAC-TTCGGTATCCC
1 TGAATGCACATAC-GTGCCCC
* *
71508043 TGAATGCACATACATGCCCA
1 TGAATGCACATACGTGCCCC
** * * *
71508063 TGTTTGTACTTTA-GTACCCC
1 TGAATGCAC-ATACGTGCCCC
71508083 TGAATGCACATACGTGCCCC
1 TGAATGCACATACGTGCCCC
** * * *
71508103 TGTTTGTAC-TTCGGTACCCC
1 TGAATGCACATAC-GTGCCCC
*
71508123 TGAATGCACATACATGCC
1 TGAATGCACATACGTGCC
71508141 GCTGTTTGTA
Statistics
Matches: 75, Mismatches: 37, Indels: 12
0.60 0.30 0.10
Matches are distributed among these distances:
19 6 0.08
20 63 0.84
21 6 0.08
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (20 bp):
TGAATGCACATACGTGCCCC
Found at i:71513084 original size:69 final size:69
Alignment explanation
Indices: 71513004--71513144 Score: 264
Period size: 69 Copynumber: 2.0 Consensus size: 69
71512994 CAGTATCGTA
71513004 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
1 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
71513069 CATC
66 CATC
* *
71513073 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATTTGTTTGAGCATATATATA
1 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
71513138 CATC
66 CATC
71513142 TTA
1 TTA
71513145 TAGGAAACAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (69 bp):
TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGAATATATATA
CATC
Found at i:71520725 original size:33 final size:33
Alignment explanation
Indices: 71520688--71520755 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
71520678 GAATGCTAAA
71520688 ATGCCACCAGGGATTACACAATCAATTCAAGAG
1 ATGCCACCAGGGATTACACAATCAATTCAAGAG
71520721 ATGCCACCAGGGATTACACAATCAATTCAAGAG
1 ATGCCACCAGGGATTACACAATCAATTCAAGAG
71520754 AT
1 AT
71520756 TCTGGATTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.19
Consensus pattern (33 bp):
ATGCCACCAGGGATTACACAATCAATTCAAGAG
Found at i:71523254 original size:3 final size:3
Alignment explanation
Indices: 71523246--71523281 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
71523236 TGAAGTTGAT
71523246 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
71523282 AATGGCCGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:71535062 original size:13 final size:13
Alignment explanation
Indices: 71535044--71535069 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71535034 TCGACAGGGA
71535044 CACGCCCGTGTGC
1 CACGCCCGTGTGC
71535057 CACGCCCGTGTGC
1 CACGCCCGTGTGC
71535070 GATTGCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.31, T:0.15
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:71536990 original size:15 final size:15
Alignment explanation
Indices: 71536970--71536999 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71536960 AGTTACTACT
71536970 CAAATTTTGAAATCA
1 CAAATTTTGAAATCA
71536985 CAAATTTTGAAATCA
1 CAAATTTTGAAATCA
71537000 TTCGTAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (15 bp):
CAAATTTTGAAATCA
Found at i:71538642 original size:30 final size:31
Alignment explanation
Indices: 71538606--71538670 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
71538596 CAATCGAGAC
*
71538606 TTAACCCTTTGTCACCATTTTCTAGCATGT-
1 TTAACCCTTTGTCACCATTTTCTAACATGTA
*
71538636 TTAACCCTTTTTCACCATTTTCTAACATGTA
1 TTAACCCTTTGTCACCATTTTCTAACATGTA
71538667 TTAA
1 TTAA
71538671 TTTCTCATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 28 0.88
31 4 0.12
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.45
Consensus pattern (31 bp):
TTAACCCTTTGTCACCATTTTCTAACATGTA
Found at i:71541524 original size:25 final size:24
Alignment explanation
Indices: 71541487--71541539 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
71541477 GCACACAGCC
* *
71541487 GTGTTCCAGCCCGTGTGCCAGGCT
1 GTGTTACAGCCCGTATGCCAGGCT
71541511 GTGTTACACGCCCGTATGCCAGGCT
1 GTGTTACA-GCCCGTATGCCAGGCT
71541536 GTGT
1 GTGT
71541540 AACTCTCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.11, C:0.30, G:0.32, T:0.26
Consensus pattern (24 bp):
GTGTTACAGCCCGTATGCCAGGCT
Found at i:71542471 original size:41 final size:41
Alignment explanation
Indices: 71542414--71542535 Score: 163
Period size: 41 Copynumber: 3.0 Consensus size: 41
71542404 AGTGATTTAC
* *
71542414 GGGTACCAAACTACAAACAGGGGCACGTATGTGCAATTCAG
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
* * ** * *
71542455 GGGTACCGAAGTACAAACATGGGCACGCATGTGTGATTTAT
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
*
71542496 GGGTACCGAAGTACAAACAGGGGCACGTATATGCAATTCA
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCA
71542536 TACAATAATT
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20
Consensus pattern (41 bp):
GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
Found at i:71545820 original size:28 final size:28
Alignment explanation
Indices: 71545788--71545866 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
71545778 AATTTGGCTG
* *
71545788 AAACTAAAACAAATTAAAAACATGTACT
1 AAACTAAAACAAATTTAAAACATGAACT
* * *
71545816 AAACTAAGACATATTTAAAACATGAATT
1 AAACTAAAACAAATTTAAAACATGAACT
* * *
71545844 AAAATAAAATACATTTAAAACAT
1 AAACTAAAACAAATTTAAAACAT
71545867 AATTAAGATG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.59, C:0.11, G:0.04, T:0.25
Consensus pattern (28 bp):
AAACTAAAACAAATTTAAAACATGAACT
Found at i:71549698 original size:41 final size:41
Alignment explanation
Indices: 71549584--71549788 Score: 218
Period size: 41 Copynumber: 5.0 Consensus size: 41
71549574 GGGTACAAAA
* * * **
71549584 GTGC-ATTTAGAGGCACCAAAGTACAAACAAGGGCACATAT
1 GTGCAATTTAGGGGTACCAAAGTACAAACAGGGGCATGTAT
* * * *
71549624 GCGCAATTTAGGAGTA-CGAAGTAAAAACAGGGGCATGTAT
1 GTGCAATTTAGGGGTACCAAAGTACAAACAGGGGCATGTAT
* * *
71549664 ATGCAATTCAGGGGTACCAAAGTGA-AAACAGGGGCATTTAT
1 GTGCAATTTAGGGGTACCAAAGT-ACAAACAGGGGCATGTAT
* * * *
71549705 GTGCAATTTAGGGGTATCAAAGTACAAATAGGGGTATGTAC
1 GTGCAATTTAGGGGTACCAAAGTACAAACAGGGGCATGTAT
* *
71549746 GTGCAATTTAGGGGTACCAAAGTACAAATAGGGGCACGTAT
1 GTGCAATTTAGGGGTACCAAAGTACAAACAGGGGCATGTAT
71549787 GT
1 GT
71549789 AAAATTCATA
Statistics
Matches: 135, Mismatches: 26, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
40 35 0.26
41 99 0.73
42 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (41 bp):
GTGCAATTTAGGGGTACCAAAGTACAAACAGGGGCATGTAT
Found at i:71549738 original size:20 final size:20
Alignment explanation
Indices: 71549713--71549779 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
71549703 ATGTGCAATT
71549713 TAGGGGTATCAAAGTACAAA
1 TAGGGGTATCAAAGTACAAA
** * * *
71549733 TAGGGGTATGTACGTGCAATT
1 TAGGGGTATCAAAGTACAA-A
*
71549754 TAGGGGTACCAAAGTACAAA
1 TAGGGGTATCAAAGTACAAA
71549774 TAGGGG
1 TAGGGG
71549780 CACGTATGTA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
20 21 0.60
21 14 0.40
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.22
Consensus pattern (20 bp):
TAGGGGTATCAAAGTACAAA
Found at i:71549759 original size:21 final size:21
Alignment explanation
Indices: 71549705--71549768 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
71549695 GGGCATTTAT
71549705 GTGCAATTTAGGGGTATCAAA
1 GTGCAATTTAGGGGTATCAAA
* * ** *
71549726 GTACAA-ATAGGGGTATGTAC
1 GTGCAATTTAGGGGTATCAAA
*
71549746 GTGCAATTTAGGGGTACCAAA
1 GTGCAATTTAGGGGTATCAAA
71549767 GT
1 GT
71549769 ACAAATAGGG
Statistics
Matches: 31, Mismatches: 11, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (21 bp):
GTGCAATTTAGGGGTATCAAA
Found at i:71559424 original size:22 final size:22
Alignment explanation
Indices: 71559399--71559479 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 22
71559389 TACGGCCTGT
71559399 AGCCGTTCTGTATAAGGCTTTC
1 AGCCGTTCTGTATAAGGCTTTC
* *
71559421 AGCCTTTCTGCGATACTTATGGCTTAT-
1 AGCCGTTCT--G-TA--TAAGGCTT-TC
71559448 AGCCGTTCTGTATAAGGCTTTC
1 AGCCGTTCTGTATAAGGCTTTC
*
71559470 AGCCTTTCTG
1 AGCCGTTCTG
71559480 CGATACTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
21 1 0.02
22 24 0.51
24 3 0.06
25 3 0.06
27 15 0.32
28 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (22 bp):
AGCCGTTCTGTATAAGGCTTTC
Found at i:71559470 original size:49 final size:49
Alignment explanation
Indices: 71559398--71559507 Score: 220
Period size: 49 Copynumber: 2.2 Consensus size: 49
71559388 GTACGGCCTG
71559398 TAGCCGTTCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTA
1 TAGCCGTTCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTA
71559447 TAGCCGTTCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTA
1 TAGCCGTTCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTA
71559496 TAGCCGTTCTGT
1 TAGCCGTTCTGT
71559508 TATTTGGCAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 61 1.00
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (49 bp):
TAGCCGTTCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTA
Found at i:71559505 original size:27 final size:27
Alignment explanation
Indices: 71559421--71559506 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
71559411 TAAGGCTTTC
*
71559421 AGCCTTTCTGCGATACTTATGGCTTAT
1 AGCCGTTCTGCGATACTTATGGCTTAT
*
71559448 AGCCGTTCT--G-TA--TAAGGCTT-T
1 AGCCGTTCTGCGATACTTATGGCTTAT
*
71559469 CAGCCTTTCTGCGATACTTATGGCTTAT
1 -AGCCGTTCTGCGATACTTATGGCTTAT
71559497 AGCCGTTCTG
1 AGCCGTTCTG
71559507 TTATTTGGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
21 1 0.02
22 15 0.32
24 3 0.06
25 3 0.06
27 24 0.51
28 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
AGCCGTTCTGCGATACTTATGGCTTAT
Found at i:71559746 original size:27 final size:27
Alignment explanation
Indices: 71559716--71559780 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 27
71559706 ACATCTATTA
*
71559716 CTGATTCTGTAGTGGGCTTAGGCCCAC
1 CTGATTCTGTAGTGGGCTAAGGCCCAC
* *
71559743 CTGATTCTATTATTGGGCTAAGGCCCAC
1 CTGATTCT-GTAGTGGGCTAAGGCCCAC
*
71559771 CTGATACTGT
1 CTGATTCTGT
71559781 GTCTGTGATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (27 bp):
CTGATTCTGTAGTGGGCTAAGGCCCAC
Found at i:71560872 original size:29 final size:29
Alignment explanation
Indices: 71560830--71560887 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
71560820 ATCCTTTGAC
*
71560830 AATTAGGGATCGTTGTTTTTCGGCTAACT
1 AATTAGGGATCGTTGTTTTCCGGCTAACT
71560859 AATTAGGGATCGTTGTTTTCCGGCTAACT
1 AATTAGGGATCGTTGTTTTCCGGCTAACT
71560888 TGATGTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.40
Consensus pattern (29 bp):
AATTAGGGATCGTTGTTTTCCGGCTAACT
Found at i:71565331 original size:47 final size:44
Alignment explanation
Indices: 71565256--71565383 Score: 141
Period size: 47 Copynumber: 2.8 Consensus size: 44
71565246 TCACTTGTGT
* *
71565256 GAGCTAGTGTAAAACATGTCTGGAACATGCATCAGTCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGATGA
* *
71565302 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT--GATGA
*
71565350 GTGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
71565384 GCCTCGAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
45 5 0.07
46 18 0.26
47 26 0.37
48 21 0.30
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGATGA
Found at i:71565410 original size:46 final size:44
Alignment explanation
Indices: 71565360--71565469 Score: 141
Period size: 46 Copynumber: 2.4 Consensus size: 44
71565350 GTGCTAGTGT
71565360 AAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCCAATGC
1 AAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GCCAATGC
* * * *
71565406 AAGACATGTCTGGAACATGCATCGGCTACGAGATGTGTCAGTGT
1 AAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAATGC
71565450 AAGACCATGTCTGGGACATG
1 AAGA-CATGTCTGGGACATG
71565470 GTATCAGCAC
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
44 9 0.16
45 16 0.28
46 32 0.56
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (44 bp):
AAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAATGC
Found at i:71568954 original size:35 final size:35
Alignment explanation
Indices: 71568908--71569059 Score: 171
Period size: 35 Copynumber: 4.3 Consensus size: 35
71568898 TACTCTCTGT
71568908 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* *
71568943 TTGGTGTGTTTC-GATTGGACTAGCTCTTATTAGCA
1 TTGGTGTGTTTCGGA-GGGACTAGCTCTTATGAGCA
* **
71568978 TTGTTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* * * * * *
71569013 TTGCTGTGTTTTGGAGGGAATGGCTCGTGTGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
*
71569048 TCTAGTGTGTTT
1 T-TGGTGTGTTT
71569060 TTGTTGGACT
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
34 2 0.02
35 88 0.89
36 9 0.09
ACGTcount: A:0.15, C:0.13, G:0.32, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
Found at i:71573763 original size:43 final size:43
Alignment explanation
Indices: 71573697--71573865 Score: 136
Period size: 43 Copynumber: 4.0 Consensus size: 43
71573687 AACTCGTACA
* * *
71573697 ATGCCAATGTCTCAGAC-GTGGTCTTACATGTAATCA-AGTACCG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCACA-TA-CG
*
71573740 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCACATACG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCACATACG
* * *
71573782 ATGCCAATGTCCCTGACA-TGGT-TTGACACGTAAATCTCAAATC-
1 ATGCCAATGTCCCAGACAGTGGTCTT-ACACG-AAATCACATA-CG
** * *
71573825 ATTGCCAACCTCCTAGAC-GTGGTCTCACACGAAATCACATA
1 A-TGCCAATGTCCCAGACAGTGGTCTTACACGAAATCACATA
71573866 TCGAAAATCC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.02
42 26 0.25
43 49 0.48
44 24 0.24
45 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCACATACG
Found at i:71574925 original size:18 final size:18
Alignment explanation
Indices: 71574881--71574916 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71574871 AGCAACTTTT
71574881 ACATTTTATGCGATTAGG
1 ACATTTTATGCGATTAGG
71574899 ACATTTTATGCGATTAGG
1 ACATTTTATGCGATTAGG
71574917 TTCTTTTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (18 bp):
ACATTTTATGCGATTAGG
Found at i:71579670 original size:49 final size:47
Alignment explanation
Indices: 71579617--71579708 Score: 130
Period size: 49 Copynumber: 1.9 Consensus size: 47
71579607 GCGTAAGACC
* *
71579617 TGTCTGGGATATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGATT
1 TGTCTGGGACATGGCATCGACACAAAT-A-TGAGAGCCAGTGTAAGATT
**
71579666 TGTCTGGGACATGGCATCGACTTAAATATGAGAGCCAGTGTAA
1 TGTCTGGGACATGGCATCGACACAAATATGAGAGCCAGTGTAA
71579709 CACCATGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 15 0.38
48 1 0.03
49 23 0.59
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.25
Consensus pattern (47 bp):
TGTCTGGGACATGGCATCGACACAAATATGAGAGCCAGTGTAAGATT
Found at i:71583521 original size:48 final size:49
Alignment explanation
Indices: 71583408--71583644 Score: 296
Period size: 48 Copynumber: 4.8 Consensus size: 49
71583398 TAGCCAAACC
* * * * *
71583408 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
71583457 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-TGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
71583505 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
71583555 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
71583606 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
71583645 TGCGACCTCA
Statistics
Matches: 164, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
48 47 0.29
49 39 0.24
50 41 0.25
51 36 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:71585925 original size:48 final size:48
Alignment explanation
Indices: 71585867--71585968 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 48
71585857 GCATTCATTT
71585867 CATAA-TCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
1 CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
*
71585914 CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTG
1 CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
71585962 CATAAGT
1 CATAAGT
71585969 TAACGAGACC
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 5 0.09
48 48 0.91
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (48 bp):
CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
Found at i:71585947 original size:24 final size:23
Alignment explanation
Indices: 71585866--71585947 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 23
71585856 AGCATTCATT
71585866 TCATAATCATCAAAGCATCATAG
1 TCATAATCATCAAAGCATCATAG
* * *
71585889 TCATACATCATTACAG-AGTCCCT--
1 TCATA-ATCATCAAAGCA-T-CATAG
71585912 TACATAAGTCATCAAAGCATCATAG
1 T-CATAA-TCATCAAAGCATCATAG
71585937 TCATACATCAT
1 TCATA-ATCAT
71585948 TACAGAGTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 17
0.66 0.09 0.25
Matches are distributed among these distances:
23 10 0.23
24 29 0.66
25 5 0.11
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (23 bp):
TCATAATCATCAAAGCATCATAG
Found at i:71585965 original size:24 final size:24
Alignment explanation
Indices: 71585890--71585965 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
71585880 GCATCATAGT
*
71585890 CATACATCATTACAGAGTCCCTTA
1 CATACATCATTACAGAGTCCCTTG
* * * *
71585914 CATA-AGTCATCAAAGCA-T-CATAG
1 CATACA-TCATTACAG-AGTCCCTTG
71585937 TCATACATCATTACAGAGTCCCTTG
1 -CATACATCATTACAGAGTCCCTTG
71585962 CATA
1 CATA
71585966 AGTTAACGAG
Statistics
Matches: 37, Mismatches: 9, Indels: 12
0.64 0.16 0.21
Matches are distributed among these distances:
23 4 0.11
24 28 0.76
25 5 0.14
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.28
Consensus pattern (24 bp):
CATACATCATTACAGAGTCCCTTG
Found at i:71586570 original size:10 final size:10
Alignment explanation
Indices: 71586555--71586601 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
71586545 GCTATTAATC
71586555 CATACCAAAA
1 CATACCAAAA
71586565 CATACCAAAA
1 CATACCAAAA
*
71586575 CATAAGCCAAAGT
1 CAT-A-CCAAA-A
71586588 CATACCAAAA
1 CATACCAAAA
71586598 CATA
1 CATA
71586602 AAATTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 17 0.53
11 6 0.19
12 6 0.19
13 3 0.09
ACGTcount: A:0.55, C:0.28, G:0.04, T:0.13
Consensus pattern (10 bp):
CATACCAAAA
Found at i:71588133 original size:15 final size:15
Alignment explanation
Indices: 71588113--71588150 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
71588103 GTACTAACAC
71588113 TGGAGCTTCAGTTAA
1 TGGAGCTTCAGTTAA
71588128 TGGAGCTTCAGTTAA
1 TGGAGCTTCAGTTAA
*
71588143 TAGAGCTT
1 TGGAGCTT
71588151 TCAATTGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (15 bp):
TGGAGCTTCAGTTAA
Found at i:71589974 original size:33 final size:32
Alignment explanation
Indices: 71589928--71590015 Score: 106
Period size: 32 Copynumber: 2.7 Consensus size: 32
71589918 CATGTGGTTC
* *
71589928 TGTAAAATGATAACAAATATCAGCTTTTCATTT
1 TGTAAAATGATAACAAATATCAAC-TTTAATTT
* * *
71589961 TGTGAATTTATAACAAAT-TACAACTTTAATTT
1 TGTAAAATGATAACAAATAT-CAACTTTAATTT
71589993 TGTAAAATGATAACAAATATCAA
1 TGTAAAATGATAACAAATATCAA
71590016 TTAGTATTCT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
32 26 0.58
33 19 0.42
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (32 bp):
TGTAAAATGATAACAAATATCAACTTTAATTT
Found at i:71593657 original size:19 final size:19
Alignment explanation
Indices: 71593633--71593672 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
71593623 AAAGGGGAGA
71593633 TTGACATGAATGTCAAATG
1 TTGACATGAATGTCAAATG
71593652 TTGACATGAATGTCAAATG
1 TTGACATGAATGTCAAATG
71593671 TT
1 TT
71593673 TGGCAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (19 bp):
TTGACATGAATGTCAAATG
Found at i:71603821 original size:28 final size:28
Alignment explanation
Indices: 71603779--71603854 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 28
71603769 TAAATTAGAC
*
71603779 TTATTTTAGTGTTATTTAAGTATAAATAT
1 TTATTTTAAT-TTATTTAAGTATAAATAT
71603808 ATT-TTTTAATTTA-TTAAG---AAATAT
1 -TTATTTTAATTTATTTAAGTATAAATAT
*
71603832 TTATTTTAATTTTTTTAATGTAT
1 TTATTTTAATTTATTTAA-GTAT
71603855 TTAATGTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
23 2 0.05
24 15 0.39
25 4 0.11
26 1 0.03
27 5 0.13
28 3 0.08
29 6 0.16
30 2 0.05
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (28 bp):
TTATTTTAATTTATTTAAGTATAAATAT
Found at i:71606283 original size:15 final size:15
Alignment explanation
Indices: 71606260--71606289 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71606250 ATGGTTTAAA
71606260 ATTACTTATAGTTTT
1 ATTACTTATAGTTTT
*
71606275 ATTATTTATAGTTTT
1 ATTACTTATAGTTTT
71606290 TTTCTAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (15 bp):
ATTACTTATAGTTTT
Found at i:71616260 original size:16 final size:16
Alignment explanation
Indices: 71616239--71616270 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
71616229 TAGATTAAGC
71616239 TTTAGTTTTGTTCGTA
1 TTTAGTTTTGTTCGTA
71616255 TTTAGTTTTGTTCGTA
1 TTTAGTTTTGTTCGTA
71616271 CTATTGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.19, T:0.62
Consensus pattern (16 bp):
TTTAGTTTTGTTCGTA
Found at i:71624754 original size:33 final size:34
Alignment explanation
Indices: 71624717--71624814 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 34
71624707 ATGATTATAT
71624717 TTAAATATTTAAAATATAATTTATATATT-CTAA
1 TTAAATATTTAAAATATAATTTATATATTACTAA
* * *
71624750 TTAAAT-TTTATAA-ATAATTAATATTTATTACTTA
1 TTAAATATTTAAAATATAATT--TATATATTACTAA
* *
71624784 -GAAATATTTAAAATTTATATTTCATATATTA
1 TTAAATATTTAAAATATA-ATTT-ATATATTA
71624815 AAATATTAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 10 0.20
35 9 0.18
36 3 0.06
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (34 bp):
TTAAATATTTAAAATATAATTTATATATTACTAA
Found at i:71624804 original size:30 final size:30
Alignment explanation
Indices: 71624765--71624821 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
71624755 TTTTATAAAT
71624765 AATTAATATTT-AT-TACTTAGAAATATTTAA
1 AATTAATATTTCATATA-TTA-AAATATTTAA
*
71624795 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
71624822 AACAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 17 0.71
31 5 0.21
32 2 0.08
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:71627110 original size:21 final size:21
Alignment explanation
Indices: 71627086--71627126 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
71627076 ACTTTGCAAC
* *
71627086 ATTTTTAAAAAGCACAAAAAT
1 ATTTTAAAAAAACACAAAAAT
*
71627107 ATTTTAAAAAAATACAAAAA
1 ATTTTAAAAAAACACAAAAA
71627127 CATCTTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (21 bp):
ATTTTAAAAAAACACAAAAAT
Found at i:71628881 original size:29 final size:29
Alignment explanation
Indices: 71628849--71628908 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
71628839 CTGCAAGAAG
*
71628849 AATAAAGCTTAGTTGATTTTAGAATTTAT
1 AATAAAGCTTAGTTGATTTCAGAATTTAT
71628878 AATAAAGCTTAGTTGATTTCAGAATTTAT
1 AATAAAGCTTAGTTGATTTCAGAATTTAT
71628907 AA
1 AA
71628909 ACATTTATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.13, T:0.42
Consensus pattern (29 bp):
AATAAAGCTTAGTTGATTTCAGAATTTAT
Found at i:71629145 original size:30 final size:30
Alignment explanation
Indices: 71629108--71629175 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
71629098 GGTTTCATTT
*
71629108 CAGTCACTCAAC-TTTTGAAAAA-TAACAAAA
1 CAGTCACT-AACATTAT-AAAAAGTAACAAAA
* *
71629138 GAGTCACTAACATTATAAAAAGTGACAAAA
1 CAGTCACTAACATTATAAAAAGTAACAAAA
71629168 CAGTCACT
1 CAGTCACT
71629176 GATTAACAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (30 bp):
CAGTCACTAACATTATAAAAAGTAACAAAA
Found at i:71629237 original size:21 final size:21
Alignment explanation
Indices: 71629211--71629250 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
71629201 AACAAGACCA
71629211 CTGATGTGGCAAGTTAACTAG
1 CTGATGTGGCAAGTTAACTAG
**
71629232 CTGATGTGGCTGGTTAACT
1 CTGATGTGGCAAGTTAACT
71629251 TGCCACTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAG
Found at i:71629457 original size:3 final size:3
Alignment explanation
Indices: 71629449--71629473 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
71629439 ATATCTTTGC
71629449 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
71629474 GGCTCTCTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:71631148 original size:44 final size:43
Alignment explanation
Indices: 71631036--71631160 Score: 130
Period size: 44 Copynumber: 2.9 Consensus size: 43
71631026 GTAATCAAAT
* * *
71631036 ATCGATGTCATTGTCCCAGATAG-GGTCTTACAC-AAA-ATCAA
1 ATCGATGCCAATGTCCCAGAT-GTGGTCTTACACTAAATCTCAA
* * **
71631077 ATACGATGCCGATATCCCAGACATGGTCTTACACGTAAATCTCAA
1 AT-CGATGCCAATGTCCCAGATGTGGTCTTACAC-TAAATCTCAA
*
71631122 ATCGATGCCAATGTCTCAGATGTGGTCTTACACTAAATC
1 ATCGATGCCAATGTCCCAGATGTGGTCTTACACTAAATC
71631161 ATATATCGGA
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.03
42 24 0.36
43 6 0.09
44 29 0.43
45 6 0.09
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAGATGTGGTCTTACACTAAATCTCAA
Found at i:71635491 original size:1 final size:1
Alignment explanation
Indices: 71635481--71635608 Score: 94
Period size: 1 Copynumber: 128.0 Consensus size: 1
71635471 AACATGAAAC
* * * * * * * *
71635481 AAAAATAAAAAAATAAAAAATAAAAAATAAAAAATAAAAAAAAAATAAAAAAAATAAAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * *
71635546 AAAAATAAAAATAAAAATAAAAATAAAATAAAAATAAAAATAAAAATAAAAATAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
71635609 GGGAAAGCAA
Statistics
Matches: 91, Mismatches: 36, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 91 1.00
ACGTcount: A:0.86, C:0.01, G:0.00, T:0.13
Consensus pattern (1 bp):
A
Found at i:71635498 original size:6 final size:6
Alignment explanation
Indices: 71635489--71635608 Score: 163
Period size: 6 Copynumber: 19.7 Consensus size: 6
71635479 ACAAAAATAA
* *
71635489 AAAAAT AAAAAAT AAAAAAT AAAAAAT AAAAA- AAAAAT AAAAAA AATAAAA
1 AAAAAT -AAAAAT -AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT
71635540 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
71635587 AAAAAT AAAAAT AAAAAC AAAA
1 AAAAAT AAAAAT AAAAAT AAAA
71635609 GGGAAAGCAA
Statistics
Matches: 107, Mismatches: 3, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
5 10 0.09
6 71 0.66
7 26 0.24
ACGTcount: A:0.86, C:0.01, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:71635513 original size:29 final size:27
Alignment explanation
Indices: 71635482--71635603 Score: 142
Period size: 29 Copynumber: 4.4 Consensus size: 27
71635472 ACATGAAACA
71635482 AAAATAAAAAAATAAAAAATAAAAAATAA
1 AAAATAAAAAAATAAAAAAT-AAAAAT-A
71635511 AAAATAAAAAAA-AAATAAA-AAAAATA
1 AAAATAAAAAAATAAA-AAATAAAAATA
*
71635537 AAAA-AAAATAAAAATAAAAATAAAAATA
1 AAAATAAAA-AAATA-AAAAATAAAAATA
*
71635565 AAAATAAAATAAAAATAAAAATAAAAATA
1 AAAATAAAA-AAATA-AAAAATAAAAATA
71635594 AAAATAAAAA
1 AAAATAAAAA
71635604 CAAAAGGGAA
Statistics
Matches: 87, Mismatches: 0, Indels: 13
0.87 0.00 0.13
Matches are distributed among these distances:
25 4 0.05
26 8 0.09
27 10 0.11
28 17 0.20
29 48 0.55
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (27 bp):
AAAATAAAAAAATAAAAAATAAAAATA
Found at i:71638515 original size:20 final size:19
Alignment explanation
Indices: 71638469--71638515 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
71638459 GTAATTCATG
71638469 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
71638488 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
71638509 TTTAATT
1 TTTAATT
71638516 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:71648848 original size:48 final size:48
Alignment explanation
Indices: 71648786--71649094 Score: 591
Period size: 48 Copynumber: 6.4 Consensus size: 48
71648776 TATATATGTG
71648786 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
71648834 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
71648882 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
71648930 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
71648978 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
71649026 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
71649074 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
71649095 GTGATTCGGC
Statistics
Matches: 256, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 256 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:71649317 original size:37 final size:37
Alignment explanation
Indices: 71649267--71649406 Score: 262
Period size: 37 Copynumber: 3.8 Consensus size: 37
71649257 GGAAATATAT
71649267 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
71649304 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71649341 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71649378 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
71649407 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71653627 original size:24 final size:24
Alignment explanation
Indices: 71653600--71653648 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
71653590 TATGTGAGAA
71653600 AAGGTTGAGACACATATTTAGCAT
1 AAGGTTGAGACACATATTTAGCAT
*
71653624 AAGGTTGTGACACATATTTAGCAT
1 AAGGTTGAGACACATATTTAGCAT
71653648 A
1 A
71653649 TGCTTTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (24 bp):
AAGGTTGAGACACATATTTAGCAT
Found at i:71661034 original size:16 final size:17
Alignment explanation
Indices: 71661003--71661035 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
71660993 ATGTTATACG
71661003 AGCTTACTAAATTTTAT
1 AGCTTACTAAATTTTAT
*
71661020 AGCTTAC-ATATTTTAT
1 AGCTTACTAAATTTTAT
71661036 TTTCTATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (17 bp):
AGCTTACTAAATTTTAT
Done.