Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 208 of 311
Found at i:71662367 original size:20 final size:20
Alignment explanation
Indices: 71662342--71662381 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
71662332 CAACGTGGCA
71662342 AGTTAACTGGCCACATCAGC
1 AGTTAACTGGCCACATCAGC
*
71662362 AGTTAACTTGCCACATCAGC
1 AGTTAACTGGCCACATCAGC
71662382 GGTCTCACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (20 bp):
AGTTAACTGGCCACATCAGC
Found at i:71672483 original size:35 final size:35
Alignment explanation
Indices: 71672421--71672489 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
71672411 CGTGTTTGGA
** *
71672421 ACATGGCATCGACATTGTTATGTGAGCCAGTGTAG
1 ACATGGCATCGACATTAATATGCGAGCCAGTGTAG
* *
71672456 ACATGGCATCGGCCTTAATATGCGAGCCAGTGTA
1 ACATGGCATCGACATTAATATGCGAGCCAGTGTA
71672490 AGACCATGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (35 bp):
ACATGGCATCGACATTAATATGCGAGCCAGTGTAG
Found at i:71672594 original size:50 final size:48
Alignment explanation
Indices: 71672479--71672612 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
71672469 CTTAATATGC
* * * *
71672479 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCTGTATTGTTATAT
1 GAGCCAGTGTAAGACCATGTATGGAACATGGCATCGGTACTGTTATAA
* * *
71672527 GTGTCAGTGTAAGACCATGTATGGGACATGGCATCGGTACTGATGTATAA
1 GAGCCAGTGTAAGACCATGTATGGAACATGGCATCGGTACTG-T-TATAA
* *
71672577 GAGCCAGTGTACGACCATGTCTGGAACATGGCATCG
1 GAGCCAGTGTAAGACCATGTATGGAACATGGCATCG
71672613 ATATTTTACC
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 36 0.50
49 1 0.01
50 35 0.49
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTATGGAACATGGCATCGGTACTGTTATAA
Found at i:71675109 original size:12 final size:13
Alignment explanation
Indices: 71675085--71675118 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
71675075 CCATATATAT
*
71675085 ATATCACAAACAC
1 ATATCATAAACAC
71675098 ATAT-ATAAACAC
1 ATATCATAAACAC
71675110 ATATCATAA
1 ATATCATAA
71675119 GCCAAATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (13 bp):
ATATCATAAACAC
Found at i:71678335 original size:30 final size:30
Alignment explanation
Indices: 71678295--71678352 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
71678285 TTGGGCATTT
*
71678295 CCACATGGGCTAGG-CACACAG-CCATGTGAG
1 CCACACGGGCT-GGACACAC-GCCCATGTGAG
71678325 CCACACGGGCTGGACACACGCCCATGTG
1 CCACACGGGCTGGACACACGCCCATGTG
71678353 CCAGACCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.24, C:0.34, G:0.29, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTGGACACACGCCCATGTGAG
Found at i:71680023 original size:47 final size:46
Alignment explanation
Indices: 71679823--71680142 Score: 222
Period size: 47 Copynumber: 6.8 Consensus size: 46
71679813 GGGATAAGTT
* * *
71679823 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTA-TCCTCATCGGG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCGAG
* * * * * * *
71679872 GCCGATGCCATGTCCCAAACATGGTCTTATACTAGCTCTTGTATATACG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC-T-CATCT-CGAG
* ** * * * *
71679922 GCTGATGCATGTCCTGGACATGTCTTACACTAGTA--CAACTCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-GAG
* **
71679966 ACCGATGCATGTCCCAGACACATCTTACACTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAG
** * *
71680013 GCCGATGCATGTCTTAGACATGTCTTACACTGGCACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
* *
71680059 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAG
71680107 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
71680143 ACAAGAAGTC
Statistics
Matches: 214, Mismatches: 43, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.00
44 28 0.13
45 1 0.00
46 30 0.14
47 62 0.29
48 37 0.17
49 44 0.21
50 8 0.04
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
Found at i:71680116 original size:94 final size:93
Alignment explanation
Indices: 71679872--71680142 Score: 266
Period size: 94 Copynumber: 2.9 Consensus size: 93
71679862 CCTCATCGGG
* * * * * * *
71679872 GCCGATGCCATGTCCCAAACATGGTCTTATACTAGCTCTTGTATATACGT-GCTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-T-CATA-ATGTGGCCGATGCATGTCC
* * *
71679936 TGGACATGTCTTACACTAGTA-CAACTCTTA
63 TAGACATGTCTTACACTGGCACCAACTCTTA
* ** ** * *
71679966 ACCGATG-CATGTCCCAGACA-CATCTTACACTGGCTA-TCATCGTCGAGGCCGATGCATGTCTT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCATAAT-GTGGCCGATGCATGTCCT
*
71680028 AGACATGTCTTACACTGGCACTCATCTC-TA
64 AGACATGTCTTACACTGGCAC-CAACTCTTA
*
71680058 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCTA
71680123 GACATGTCTTACACTGGCAC
65 GACATGTCTTACACTGGCAC
71680143 ACAAGAAGTC
Statistics
Matches: 142, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
90 3 0.02
91 31 0.22
92 12 0.08
93 23 0.16
94 56 0.39
95 17 0.12
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCTAG
ACATGTCTTACACTGGCACCAACTCTTA
Found at i:71687447 original size:47 final size:46
Alignment explanation
Indices: 71687245--71687565 Score: 251
Period size: 47 Copynumber: 6.8 Consensus size: 46
71687235 GGGATAAGTT
* * *
71687245 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGTTA-TCCTCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGG-CACTCATC-TCGAG
* * * * *
71687294 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCCGTATATACG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACT-C--ATCT-CGAG
** * ** *
71687345 GTTGATGCATGTCCC-GTACATGTCTTACACTAGCACAAATCT-TA-
1 GCCGATGCATGTCCCAG-ACATGTCTTACACTGGCACTCATCTCGAG
*
71687389 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAG
* * * *
71687436 GCCGATGCATGTCCTAGACATGTCTTACACTGACACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
* *
71687482 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAG
*
71687530 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
71687566 ACAAGAAGTC
Statistics
Matches: 221, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 31 0.14
45 3 0.01
46 29 0.13
47 63 0.29
48 25 0.11
49 48 0.22
50 13 0.06
51 6 0.03
52 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
Found at i:71687536 original size:141 final size:141
Alignment explanation
Indices: 71687245--71687560 Score: 340
Period size: 141 Copynumber: 2.2 Consensus size: 141
71687235 GGGATAAGTT
* * * *
71687245 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGTTATCCTCATCGAGGCCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * * **
71687310 AGACATGGTCTTATACTAGCTCTCCGTATATACGTGTTGATGCATGTCCCGTACATGTCTTACAC
64 AGACATGGTCTTACACTAGCACTCCATATATACG-GCCGATGCATGTCCCGTACATGTCTTACAC
*
71687375 TAGCACAAATCTTA
128 TAGCACAAATCGTA
* *
71687389 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCTAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAG
* *
71687453 ACAT-GTCTTACACT-GACACT-CATCTCTAC-GCCGATGCCATGTCCCAG-ACATGGTCTTACA
66 ACATGGTCTTACACTAG-CACTCCATATATACGGCCGATG-CATGTCCC-GTACAT-GTCTTACA
* *
71687513 CTGGCACTCATAAT-GTG
127 CTAGCA--CA-AATCGTA
*
71687530 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACACGTCTTACACT
71687561 AGCACACAAG
Statistics
Matches: 148, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
137 5 0.03
138 12 0.08
139 21 0.14
140 12 0.08
141 46 0.31
142 32 0.22
143 13 0.09
144 7 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (141 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCACTCCATATATACGGCCGATGCATGTCCCGTACATGTCTTACACTAG
CACAAATCGTA
Found at i:71687945 original size:30 final size:30
Alignment explanation
Indices: 71687904--71687961 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
71687894 AAATTCACAT
* *
71687904 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
71687934 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
71687962 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:71698390 original size:6 final size:6
Alignment explanation
Indices: 71698374--71698402 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
71698364 TGGAAAACAG
71698374 AAAAT- AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA
71698403 TTAACCTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:71703515 original size:20 final size:18
Alignment explanation
Indices: 71703465--71703516 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
71703455 TATCAAGATA
71703465 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
71703482 AATATT-AATATAATCACTTT
1 AATATTAAAT-TAAT-A-TTT
71703502 AATATTAAATTAATA
1 AATATTAAATTAATA
71703517 AAATCCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
19 2 0.07
20 13 0.43
21 3 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:71703557 original size:68 final size:69
Alignment explanation
Indices: 71703423--71703557 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
71703413 TGATTAAACT
* * ** *
71703423 TAATCACTTTAATATTACATTAACATAATAGTTATCAAGATAAATATTAAATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAACAAAATACCTATCAAGATAAATATTAAATTAAATTTAACATT
71703488 AATA
66 AATA
* * * * *
71703492 TAATCACTTTAATATTAAATTAATAAAAT-CCTATTAAGATAAGTATTAAATTTAATTTCACATT
1 TAATCACTTTAATATTAAATTAACAAAATACCTATCAAGATAAATATTAAATTAAATTTAACATT
71703556 AA
66 AA
71703558 ACTATTAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 30 0.54
69 26 0.46
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (69 bp):
TAATCACTTTAATATTAAATTAACAAAATACCTATCAAGATAAATATTAAATTAAATTTAACATT
AATA
Found at i:71704621 original size:52 final size:52
Alignment explanation
Indices: 71704551--71704655 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
71704541 AGAACAAACA
* *
71704551 ACCTATGGCCACATTCCATATTTATCAATCCACAAAATGGCAATGAGAATGT
1 ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
71704603 ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
1 ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
71704655 A
1 A
71704656 TCATTAACTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (52 bp):
ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
Found at i:71711593 original size:48 final size:48
Alignment explanation
Indices: 71711522--71711617 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
71711512 GCTTCCTGAG
*
71711522 TAAAAACTCTTATGAGTTTCTTAATTAGCTTGGATAAGTGTCTTGTTA
1 TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
71711570 TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
1 TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
71711618 CATGATTACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (48 bp):
TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
Found at i:71719178 original size:46 final size:45
Alignment explanation
Indices: 71719111--71719285 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
71719101 TGTAACCCGC
* * *
71719111 CCATAAGCGAAATCGGACTCAACTCAACGAGCTCAGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGTAT
* * *
71719157 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTA--T
* * *
71719203 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGTAT
*
71719250 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
71719286 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 62 0.58
47 31 0.29
48 2 0.02
49 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTAT
Found at i:71719252 original size:93 final size:93
Alignment explanation
Indices: 71719118--71719289 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
71719108 CGCCCATAAG
* *
71719118 CGAAATCGGACTCAACTCAACGAGCTCAGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAAATCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71719183 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
71719211 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAAATCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
71719275 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
71719290 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAAATCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71719305 original size:46 final size:44
Alignment explanation
Indices: 71719162--71719305 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
71719152 CGTATCCATA
71719162 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
71719209 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
71719255 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
71719301 AGTGA
1 AGTGA
71719306 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:71729965 original size:12 final size:12
Alignment explanation
Indices: 71729948--71729976 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
71729938 CCACACACGC
71729948 CCGTGTGGTAGG
1 CCGTGTGGTAGG
71729960 CCGTGTGGTAGG
1 CCGTGTGGTAGG
71729972 CCGTG
1 CCGTG
71729977 CCAAAACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.21, G:0.48, T:0.24
Consensus pattern (12 bp):
CCGTGTGGTAGG
Found at i:71731101 original size:28 final size:28
Alignment explanation
Indices: 71731060--71731119 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
71731050 ATGCCGTTGA
* * *
71731060 ATACTGAATGTCTCGCACACTAAGTGCC
1 ATACTCAATATCTCACACACTAAGTGCC
*
71731088 ATACTCAATATCTCACACACTAAGTTCC
1 ATACTCAATATCTCACACACTAAGTGCC
71731116 ATAC
1 ATAC
71731120 ATAGTCGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.10, T:0.27
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGCC
Found at i:71731149 original size:40 final size:40
Alignment explanation
Indices: 71731103--71731238 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 40
71731093 CAATATCTCA
* * *
71731103 CACACTAAGTTCCATACATAGTCGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
* *
71731143 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
* * **
71731183 CACACTAAGTGCCATATATAGCCGAAGTTATGTCGTATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
* *
71731223 CACAGTATGTGCCATA
1 CACACTAAGTGCCATA
71731239 AATAACCAAT
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
Found at i:71740266 original size:15 final size:15
Alignment explanation
Indices: 71740234--71740262 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
71740224 ATTTTTGGTG
71740234 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
71740249 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
71740263 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:71741433 original size:43 final size:43
Alignment explanation
Indices: 71741385--71741512 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
71741375 TATGATTTCT
*
71741385 GATATGTGTTCTCGTATAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGTTCTCGTGTAAGACCATGTCTGGGACATTGGCATC
* *
71741428 GATATGTGTTCTCGTGTAAGACCTTGT-TCGGGACAGTGGCATC
1 GATATGTGTTCTCGTGTAAGACCATGTCT-GGGACATTGGCATC
* * * *
71741471 GATATGTAATT-ACATGTAAGACCACGTCTGGGACATTGGCAT
1 GATATGT-GTTCTCGTGTAAGACCATGTCTGGGACATTGGCAT
71741513 TGTACGATAT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 69 0.95
44 3 0.04
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGTGTTCTCGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:71745686 original size:54 final size:54
Alignment explanation
Indices: 71745604--71745707 Score: 199
Period size: 54 Copynumber: 1.9 Consensus size: 54
71745594 ATGATGAAAA
*
71745604 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGGTAGATAAACAACTTTGTTG
1 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTGTTG
71745658 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTT
1 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTT
71745708 AACAAAGTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.37
Consensus pattern (54 bp):
TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTGTTG
Found at i:71747832 original size:27 final size:29
Alignment explanation
Indices: 71747784--71747837 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
71747774 AATGAGATCG
*
71747784 CACACTTAGTGCTTGATCATTTTACTCTA
1 CACACTTAGTGCTTGATCATTTAACTCTA
*
71747813 CACACTTAGTGC-T-ATTATTTAACTC
1 CACACTTAGTGCTTGATCATTTAACTC
71747838 GCAATGCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 1 0.04
29 12 0.52
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (29 bp):
CACACTTAGTGCTTGATCATTTAACTCTA
Found at i:71747837 original size:71 final size:71
Alignment explanation
Indices: 71747743--71747896 Score: 242
Period size: 71 Copynumber: 2.2 Consensus size: 71
71747733 GTTGTATTCG
*
71747743 CACACTTAGTGC-ATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATCA-TTT
1 CACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCGAT-AGTTT
71747806 TAC-TCTA
65 TACTTC-A
*
71747813 CACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCTCACACTTAGTGCTCGATAGTTTT
1 CACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCGATAGTTTT
*
71747878 ACTTCG
66 ACTTCA
71747884 CACACTTAGTGCT
1 CACACTTAGTGCT
71747897 CGATAGTTTT
Statistics
Matches: 78, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
70 13 0.17
71 63 0.81
72 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (71 bp):
CACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCGATAGTTTT
ACTTCA
Found at i:71747897 original size:29 final size:29
Alignment explanation
Indices: 71747855--71747930 Score: 152
Period size: 29 Copynumber: 2.6 Consensus size: 29
71747845 AATGAGATCT
71747855 CACACTTAGTGCTCGATAGTTTTACTTCG
1 CACACTTAGTGCTCGATAGTTTTACTTCG
71747884 CACACTTAGTGCTCGATAGTTTTACTTCG
1 CACACTTAGTGCTCGATAGTTTTACTTCG
71747913 CACACTTAGTGCTCGATA
1 CACACTTAGTGCTCGATA
71747931 ATTCACATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (29 bp):
CACACTTAGTGCTCGATAGTTTTACTTCG
Found at i:71752918 original size:40 final size:41
Alignment explanation
Indices: 71752838--71752924 Score: 149
Period size: 40 Copynumber: 2.1 Consensus size: 41
71752828 TGTTGATGAT
* *
71752838 AATTCAATATGGTTATGTTTTTATTTTTATTTTTAGAGTTC
1 AATTCTATATGGTTATGTTTTTATATTTATTTTTAGAGTTC
71752879 AATTCTATATGGTTATGTTTTT-TATTTATTTTTAGAGTTC
1 AATTCTATATGGTTATGTTTTTATATTTATTTTTAGAGTTC
71752919 AATTCT
1 AATTCT
71752925 TACTCACTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 23 0.52
41 21 0.48
ACGTcount: A:0.24, C:0.06, G:0.11, T:0.59
Consensus pattern (41 bp):
AATTCTATATGGTTATGTTTTTATATTTATTTTTAGAGTTC
Found at i:71753071 original size:66 final size:65
Alignment explanation
Indices: 71753001--71753199 Score: 185
Period size: 66 Copynumber: 3.2 Consensus size: 65
71752991 AAATATATTT
71753001 AATATTAATTATTTCAAATTATCTTTTATTGTACAATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTATCTTTTATTGTACAATATATTATGATTTGAGTAAATTCATATAA
71753066 G
65 G
* *
71753067 AATATTAATTA-TTAAGA--A--TTTTA-T-TA-AAT-TA-TAT-ATTTTAATTAAGA-T-ATAT
1 AATATTAATTATTTAA-ATTATCTTTTATTGTACAATATATTATGA-TTTGAGTAA-ATTCATAT
**
71753119 -TT
63 AAG
* *
71753121 AATAATAATTATGTTAAATTATCTTTTATAGTATC-ATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTAT-TTAAATTATCTTTTATTGTA-CAATATATTATGATTTGAGTAAATTCATATA
71753185 AG
64 AG
71753187 AATATTAATTATT
1 AATATTAATTATT
71753200 AAGAATTTTA
Statistics
Matches: 103, Mismatches: 11, Indels: 39
0.67 0.07 0.25
Matches are distributed among these distances:
54 10 0.10
55 6 0.06
56 15 0.15
57 4 0.04
58 3 0.03
59 7 0.07
60 1 0.01
61 7 0.07
62 2 0.02
63 4 0.04
64 13 0.13
65 9 0.09
66 22 0.21
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.48
Consensus pattern (65 bp):
AATATTAATTATTTAAATTATCTTTTATTGTACAATATATTATGATTTGAGTAAATTCATATAAG
Found at i:71753089 original size:120 final size:120
Alignment explanation
Indices: 71752963--71753252 Score: 503
Period size: 120 Copynumber: 2.4 Consensus size: 120
71752953 AATTATTTTA
* *
71752963 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATCTTT
*
71753027 TATTGTA-CAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATC-ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
71753083 AATTTTATTAAATTATATATTTTAATTAAGATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
71753148 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
71753203 AATTTTATTAAATTACATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
71753253 ATTTAAATAT
Statistics
Matches: 162, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
120 159 0.98
121 3 0.02
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:71753486 original size:45 final size:44
Alignment explanation
Indices: 71753403--71753493 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
71753393 ACCTCTATTC
* *
71753403 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
*** *
71753447 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCATTA
71753492 CA
1 CA
71753494 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
Found at i:71753493 original size:16 final size:16
Alignment explanation
Indices: 71753472--71753525 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
71753462 TTGATTTGCT
*
71753472 ATTACACATCTATTCC
1 ATTACACATCTAATCC
*
71753488 ATTACACCTCTAATCC
1 ATTACACATCTAATCC
*
71753504 AATACATC-TCTAATCC
1 ATTACA-CATCTAATCC
*
71753520 AATACA
1 ATTACA
71753526 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
16 33 0.97
17 1 0.03
ACGTcount: A:0.37, C:0.31, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACATCTAATCC
Found at i:71756107 original size:51 final size:51
Alignment explanation
Indices: 71756031--71756136 Score: 151
Period size: 51 Copynumber: 2.1 Consensus size: 51
71756021 TTCGTGAGGT
* *
71756031 ATGTAGCATCCAAGCTCGTTGAGAGGTCCGAGTTCATGATAGATGTGATT-C
1 ATGTAACATCCAAGCTCATTGAGAGGTCCGAGTTCATGATAGATGTG-TTAC
* * *
71756082 ATGTAACATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGTTAC
1 ATGTAACATCCAAGCTCATTGAGAGGTCCGAGTTCATGATAGATGTGTTAC
71756133 ATGT
1 ATGT
71756137 TATGTGGTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 2 0.04
51 47 0.96
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
ATGTAACATCCAAGCTCATTGAGAGGTCCGAGTTCATGATAGATGTGTTAC
Found at i:71761400 original size:21 final size:21
Alignment explanation
Indices: 71761374--71761424 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
71761364 AGGTAGCAGA
71761374 AAAATGTATAATGATTTAAAG
1 AAAATGTATAATGATTTAAAG
71761395 AAAATGTATAATGATTTAAAG
1 AAAATGTATAATGATTTAAAG
71761416 AAAATGTAT
1 AAAATGTAT
71761425 TGGTGGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (21 bp):
AAAATGTATAATGATTTAAAG
Found at i:71773889 original size:51 final size:51
Alignment explanation
Indices: 71773813--71773918 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
71773803 TTCGTGAGGT
*
71773813 ATGTAGCATCCAAGCTCGTTGAGAGGT-TCAAGTTCATGATGGATGTGATT-C
1 ATGTAACATCCAAGCTCGTTGAGAGGTCT-AAGTTCATGATGGATGTG-TTGC
* * * *
71773864 ATGTAACATCCGAGCTCTTTGAGAGGTCTGAGTTCATTATGGATGTGTTGC
1 ATGTAACATCCAAGCTCGTTGAGAGGTCTAAGTTCATGATGGATGTGTTGC
71773915 ATGT
1 ATGT
71773919 TATGTGGTAG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
50 2 0.04
51 45 0.94
52 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (51 bp):
ATGTAACATCCAAGCTCGTTGAGAGGTCTAAGTTCATGATGGATGTGTTGC
Found at i:71777751 original size:38 final size:38
Alignment explanation
Indices: 71777688--71777845 Score: 201
Period size: 38 Copynumber: 4.1 Consensus size: 38
71777678 ATTTGATGTG
* * * *
71777688 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGTATTA
* *
71777728 TATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
71777766 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
71777804 TATCCGGGTTGAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
71777842 TATC
1 TATC
71777846 TGAGCTTAAA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
37 1 0.01
38 93 0.88
39 5 0.05
40 7 0.07
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:71780744 original size:126 final size:126
Alignment explanation
Indices: 71780515--71781194 Score: 789
Period size: 126 Copynumber: 5.4 Consensus size: 126
71780505 TTTTTCTCAA
* ** * * * *
71780515 TCAGCAAAAGTACTAAAAAAAGCTCCCAGGTGGATGCT-ATTTTCTACAGTAGTTTTTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAAA
* * * *
71780579 TAATTTTGAGAAGATGATTATGAAAAAAT-GAGGTCAAAAACGCTTCAAGTAGGATTCACTG
66 TAATTTTGAGAAGATGATTCTGAAAAAATAG-GGTAAAAAACGCTTCAAGCAGGATGCACTG
* * *
71780640 TCAGCAAAAGTACTGAAAAAATCTCCCACCTGGACGTTCTTCTTT-TATGGTAGTTTCTGAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTT-TTTCTATAGTAGTTTCTGAAAAA
* * * * *
71780704 ATAATTTTCAGAAGATAATTCTGAAAAGATAGGGTAAAAAACGCTTCAAGCATGATGCACTT
65 ATAATTTTGAGAAGATGATTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
* * * *
71780766 TCAGTAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGCAATTTTTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAAA
* * *
71780831 TAATTTTTAGAAGATGGTTCTG-AAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACTG
66 TAATTTTGAGAAGATGATTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
* * * * * * *
71780891 TTAGCAAAAGTATTG-AAAAAGCTCACACATGGATGCTCTTTTTCTACAGTATTTTCTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGTAGTTTCTG-AAAAA
* * * * *
71780955 ATAATTTTGAGAAGATGATTCTGAAAACATAGGGTAAAAAAAGCTTCAACCATGATGCACTT
65 ATAATTTTGAGAAGATGATTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
* * * *
71781017 TCAGCAAAAGTACTGAAAAAAGCTCCCAACTAGACACT-TTTTT-TATACATCAGTTTCTGAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATA-GT-AGTTTCTGAAAA
* * * *
71781080 AATAGTTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAATGCTTCAAGCAGGATCCACTG
64 AATAATTTTGAGAAGATGATTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
* * * * * * *
71781143 TCAGGAAAAGTACTGAGAAATGCTCCCACCTCGACGTTGTTTTTCTACAGTA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGTA
71781195 CATCCTGCTT
Statistics
Matches: 467, Mismatches: 77, Indels: 21
0.83 0.14 0.04
Matches are distributed among these distances:
124 36 0.08
125 111 0.24
126 284 0.61
127 33 0.07
128 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAAA
TAATTTTGAGAAGATGATTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
Found at i:71780970 original size:251 final size:250
Alignment explanation
Indices: 71780515--71781167 Score: 835
Period size: 251 Copynumber: 2.6 Consensus size: 250
71780505 TTTTTCTCAA
* ** * * *
71780515 TCAGCAAAAGTACTAAAAAAAGCTCCCAGGTGGATGCTATTTTCTACAGTAGTTTTTGAAAAAAT
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAACTGGACGCTTTTTTCTACAGCAGTTTTTGAAAAAAT
* * * * *
71780580 AATTTTGAGAAGATGATTATGAAAAA-ATGAGGTCAAAAACGCTTCAAGTAGGATTCACTGTCAG
66 AATTTTGAGAAGATGGTTCTGAAAAATA-G-GGTAAAAAACGCTTCAAGCAGGATCCACTGTCAG
* * * * **
71780644 CAAAAGTACTGAAAAAATCTCCCACCTGGACGTTCTTCTTTTATGGTAGTTTCTGAAAAAATAAT
129 CAAAAGTACTGAAAAAAGCTCACACATGGACGCTCTTCTTTTACAGTAGTTTCTGAAAAAATAAT
* * *
71780709 TTTCAGAAGATAATTCTGAAAAGATAGGGTAAAAAACGCTTCAAGCATGATGCACTT
194 TTTCAGAAGATAATTCTGAAAACATAGGGTAAAAAAAGCTTCAACCATGATGCACTT
* * * *
71780766 TCAGTAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTATAGCAATTTTTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAACTGGACGCT-TTTTTCTACAGCAGTTTTTGAAAAAA
* * * *
71780831 TAATTTTTAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAGCAAGATGCACTGTTAGC
65 TAATTTTGAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAGCAGGATCCACTGTCAGC
* * *
71780896 AAAAGTATTG-AAAAAGCTCACACATGGATGCTCTT-TTTCTACAGTATTTTCTGAAAAAAATAA
130 AAAAGTACTGAAAAAAGCTCACACATGGACGCTCTTCTTT-TACAGTAGTTTCTG-AAAAAATAA
* *
71780959 TTTTGAGAAGATGATTCTGAAAACATAGGGTAAAAAAAGCTTCAACCATGATGCACTT
193 TTTTCAGAAGATAATTCTGAAAACATAGGGTAAAAAAAGCTTCAACCATGATGCACTT
* * * * *
71781017 TCAGCAAAAGTACTGAAAAAAGCTCCCAACTAGACACTTTTTTTATACATCAGTTTCTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAACTGGACGC-TTTTTTCTACAGCAGTTTTTGAAAAAA
* *
71781082 TAGTTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAATGCTTCAAGCAGGATCCACTGTCAG
65 TAATTTTGAGAAGATGGTTCTG-AAAAATAGGGTAAAAAACGCTTCAAGCAGGATCCACTGTCAG
* * *
71781147 GAAAAGTACTGAGAAATGCTC
129 CAAAAGTACTGAAAAAAGCTC
71781168 CCACCTCGAC
Statistics
Matches: 345, Mismatches: 50, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
249 3 0.01
250 31 0.09
251 208 0.60
252 95 0.28
253 8 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (250 bp):
TCAGCAAAAGTACTGAAAAAAGCTCCCAACTGGACGCTTTTTTCTACAGCAGTTTTTGAAAAAAT
AATTTTGAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAGCAGGATCCACTGTCAGCA
AAAGTACTGAAAAAAGCTCACACATGGACGCTCTTCTTTTACAGTAGTTTCTGAAAAAATAATTT
TCAGAAGATAATTCTGAAAACATAGGGTAAAAAAAGCTTCAACCATGATGCACTT
Found at i:71781291 original size:25 final size:25
Alignment explanation
Indices: 71781262--71781357 Score: 122
Period size: 25 Copynumber: 3.8 Consensus size: 25
71781252 TTACAGCAAG
*
71781262 AGAAATT-AGAGAAGTTCAAAAGAAT
1 AGAAATTGA-AGAAGTTCAGAAGAAT
*
71781287 AGAAATTGAATAAGTTCAGAAGAAT
1 AGAAATTGAAGAAGTTCAGAAGAAT
* *
71781312 AGAAATTGAATAAGTTTAGAAGAAT
1 AGAAATTGAAGAAGTTCAGAAGAAT
* *
71781337 ATAAATTGAAGAAGTTGAGAA
1 AGAAATTGAAGAAGTTCAGAA
71781358 AGTATAAGTT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 63 0.98
26 1 0.02
ACGTcount: A:0.53, C:0.02, G:0.21, T:0.24
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAGAAGAAT
Found at i:71783056 original size:24 final size:25
Alignment explanation
Indices: 71782979--71783049 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
71782969 GAGGAAGTGC
* * * *
71782979 AAAAGGACTTTTGCCCTAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTATCA
71783005 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
71783030 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
71783050 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 34 0.83
26 7 0.17
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:71783062 original size:24 final size:25
Alignment explanation
Indices: 71782988--71783062 Score: 84
Period size: 25 Copynumber: 3.0 Consensus size: 25
71782978 CAAAAGGACT
* *
71782988 TTTGCCCTAGTTTACCGAAAAG-GGC
1 TTTGCCCCAGTTTATC-AAAAGAGGC
71783013 TTTGCCCCAGTTTATCAAAA-AGGGC
1 TTTGCCCCAGTTTATCAAAAGA-GGC
*
71783038 TTTGCCCCAG-TTATTAAAAGAGGC
1 TTTGCCCCAGTTTATCAAAAGAGGC
71783062 T
1 T
71783063 AGGCCTCCAG
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
24 16 0.36
25 28 0.64
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
TTTGCCCCAGTTTATCAAAAGAGGC
Found at i:71783304 original size:30 final size:31
Alignment explanation
Indices: 71783270--71783346 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
71783260 CGTTTATAGT
*
71783270 AAAGGCTTCGGCCCAGAGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGAGACATGAATAATGA
* * *
71783300 AAAGGCTTCGGCCTAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGAGACATGAATAATGA
71783331 AAAGGCTTCGGCCCAG
1 AAAGGCTTCGGCCCAG
71783347 TATATGTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 20 0.49
31 21 0.51
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.19
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGAGACATGAATAATGA
Found at i:71789577 original size:8 final size:8
Alignment explanation
Indices: 71789564--71789595 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
71789554 TAAACCATAG
71789564 TTTTCTTC
1 TTTTCTTC
71789572 TTTTCTTC
1 TTTTCTTC
71789580 TTTT-TTC
1 TTTTCTTC
71789587 -TTTCTTC
1 TTTTCTTC
71789594 TT
1 TT
71789596 CTCTAGCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 3 0.14
7 6 0.27
8 13 0.59
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTCTTC
Found at i:71790900 original size:26 final size:26
Alignment explanation
Indices: 71790864--71790934 Score: 110
Period size: 25 Copynumber: 2.8 Consensus size: 26
71790854 GAGGAAGTGC
*
71790864 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCA
*
71790890 AAAAGGGC-TTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
71790915 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
71790935 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
25 34 0.81
26 8 0.19
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCA
Found at i:71790958 original size:50 final size:51
Alignment explanation
Indices: 71790864--71790959 Score: 117
Period size: 50 Copynumber: 1.9 Consensus size: 51
71790854 GAGGAAGTGC
**
71790864 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
71790915 AAAAGGG-TTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
71790960 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 17 0.44
51 7 0.18
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:71791224 original size:31 final size:30
Alignment explanation
Indices: 71791155--71791232 Score: 102
Period size: 31 Copynumber: 2.6 Consensus size: 30
71791145 TGTTTACAGT
* *
71791155 AAAGGCTTCAGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
* * *
71791185 AAAAGCTTCGGCCTAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
71791216 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
71791233 ATATGTTGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 19 0.47
31 21 0.52
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:71791516 original size:25 final size:25
Alignment explanation
Indices: 71791488--71791538 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
71791478 GGCCATTTTA
*
71791488 ACTTTGTTTTCTTCTCTTTTCTGGG
1 ACTTTGTTTCCTTCTCTTTTCTGGG
71791513 ACTTTGTTTCCTTCTCTTTTCTGGG
1 ACTTTGTTTCCTTCTCTTTTCTGGG
71791538 A
1 A
71791539 TTATTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.06, C:0.22, G:0.16, T:0.57
Consensus pattern (25 bp):
ACTTTGTTTCCTTCTCTTTTCTGGG
Found at i:71794807 original size:54 final size:54
Alignment explanation
Indices: 71794634--71794816 Score: 244
Period size: 55 Copynumber: 3.4 Consensus size: 54
71794624 ATGTCTTGAT
* * *
71794634 ATGGTCTTACATGGTATCCTTGGCTTAT-GAACTCACCAATGCCATGCCTTGGC
1 ATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
** * *
71794687 ATGGTCTTACATGGGAT-CTCTGCCTTATAGTAACTCATCAATGCCATGTCTTGAC
1 ATGGTCTTACATGATATCCT-TGCCTTATAG-AACTCATCAATGCCATGCCTTGGC
* * *
71794742 ATGGTCCTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 ATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
71794796 ATGGTCTTACATGATATCCTT
1 ATGGTCTTACATGATATCCTT
71794817 ATCTTACCAA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 23 0.21
54 41 0.37
55 44 0.39
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
ATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
Found at i:71794852 original size:47 final size:47
Alignment explanation
Indices: 71794795--71794916 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
71794785 CATGCCTTGG
* *
71794795 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
71794842 CATGGCCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
71794889 CATGGTTTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
71794917 TTGCCAATTC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:71803800 original size:25 final size:25
Alignment explanation
Indices: 71803771--71803818 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71803761 TTATAATATG
* * *
71803771 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
71803796 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
71803819 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:71803879 original size:20 final size:21
Alignment explanation
Indices: 71803844--71803900 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
71803834 TGATACGTGG
71803844 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
71803862 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
71803883 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
71803901 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:71804008 original size:24 final size:24
Alignment explanation
Indices: 71803949--71804055 Score: 180
Period size: 24 Copynumber: 4.4 Consensus size: 24
71803939 GGAGGAAGTG
71803949 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
71803973 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
71803998 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
71804022 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
71804045 TAAAAGAGGCT
1 TAAAAG-GGCT
71804056 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
23 18 0.23
24 38 0.48
25 23 0.29
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:71804021 original size:49 final size:48
Alignment explanation
Indices: 71803949--71804078 Score: 183
Period size: 49 Copynumber: 2.6 Consensus size: 48
71803939 GGAGGAAGTG
71803949 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTT-TGCCCCAGTTAT
*
71803998 TAAAAGGGCTTATGCCCCAGTTATTA-AAAGGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTTGCCCCAGTTAT
*
71804045 TAAAAGAGGC-TAGGCCTCCAGATATATGATAAAG
1 TAAAAG-GGCTTATGCC-CCAG-T-TATGATAAAG
71804079 CAGCTATGCT
Statistics
Matches: 73, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
47 23 0.32
48 16 0.22
49 26 0.36
50 4 0.05
51 4 0.05
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (48 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTTGCCCCAGTTAT
Found at i:71804298 original size:31 final size:31
Alignment explanation
Indices: 71804263--71804326 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71804253 CGTTTACAGT
*
71804263 AAAGGCTTCGGCCCAGTAATGTGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
71804294 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71804325 AA
1 AA
71804327 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71805119 original size:55 final size:53
Alignment explanation
Indices: 71805041--71805196 Score: 161
Period size: 55 Copynumber: 2.9 Consensus size: 53
71805031 TACAGTATCA
* *
71805041 TTGCCTTAT-GAACTCACCGATGCCATGCCTTGGCATGGTCTTACATGGGACC
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACC
* ** ****
71805093 TTTGCCTTATAGTAACTCATCAATGCCATGTCTTGATATGGTCTTACATTATTTCC
1 -TTGCCTTATAG-AACTCATCAATGCCATGCCTTGGCATGGTCTTACA-TGGGACC
* * * *
71805149 TTGCCATATAAAACTTATCAATGCCATGCCTTGGCATGATCTTACATG
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATG
71805197 ATATCCTTAT
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 10 0.12
54 31 0.37
55 39 0.47
56 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACC
Found at i:71805299 original size:47 final size:47
Alignment explanation
Indices: 71805183--71805300 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
71805173 CATGCCTTGG
* * *
71805183 CATGATCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
71805230 CATGGTCTTACATGGCATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
71805277 CATGGTCTTACATGGTATCCTTGT
1 CATGGTCTTACATGGTATCCTTGT
71805301 TTTAGTGCCA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:71808094 original size:42 final size:42
Alignment explanation
Indices: 71808028--71808139 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
71808018 ATCTCGTACA
* *
71808028 ATGCCAACGTCCCA-AACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGAA-GTGGTCTTACACGAAATCAAATA-CG
**
71808071 ATGCCATTGT-CCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAACGTCCCAGA-AGTGGTCTTACACGAAATCAAATACG
71808112 ATGCCAACGTCCCAGAAGTGGTCTTACA
1 ATGCCAACGTCCCAGAAGTGGTCTTACA
71808140 ACGATGCCAA
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
41 12 0.20
42 36 0.61
43 10 0.17
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACGAAATCAAATACG
Found at i:71808147 original size:31 final size:31
Alignment explanation
Indices: 71808109--71808170 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
71808099 GAAATCAAAT
71808109 ACGATGCCAACGTCCCAGAAGTGGTCTTACA
1 ACGATGCCAACGTCCCAGAAGTGGTCTTACA
*
71808140 ACGATGCCAACGTCCCAGACGTGGTCTTACA
1 ACGATGCCAACGTCCCAGAAGTGGTCTTACA
71808171 CATAAATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (31 bp):
ACGATGCCAACGTCCCAGAAGTGGTCTTACA
Found at i:71811644 original size:754 final size:750
Alignment explanation
Indices: 71809550--71811807 Score: 3712
Period size: 753 Copynumber: 3.0 Consensus size: 750
71809540 AAAAAGATGA
* *
71809550 AATTGGAAAGTGAAAAAATAAAAGATGATAAATGATAAAAAAATATTATCATATTATCATCTTTC
1 AATTGGAAAGTGAAATAATAAAAGATGATAAATGATAAAAAAATATCATCATATTATCATCTTTC
* * * *
71809615 ACATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATGGCCAAGCTTATTGTGATCA
66 CCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGATCA
* *
71809680 ATTGGGTAAGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTTTGAGATCGTAATAGCTTAAT
131 A-T---TAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAAT
* *
71809745 TTCACTATCTCGATGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTAT
192 TTAACTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTAT
* *
71809810 AGATGAATTATGAATTTTTATGGTAGAAAATGATAGGTTGTTGATAGATAAACAACTTTTGTTAT
257 AGATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTA-
*
71809875 A-TGAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGACGTAAAATTCATGGAAAATT
321 AGTGAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATT
* *
71809939 TCTAAATTTTTTGAAATACATGGGTTTTAAATATTACATGAAAATTTTGGTTAGGCTTGGAATAA
386 TCT-AATTTTTTGAAATACATGGGTTTTAAATATTATATGAAAAATTTGGTTAGGCTTGGAATAA
*
71810004 GGATTAAATTGCATGAATTTCATATTCCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTA
450 GGATTAAATTGCATGAATTTCATATTTCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTA
* *
71810069 GGAGCAAAACAGTAATTTTTCCGAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAA
515 GGAGCAAAA-AGTAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAA
* * *
71810134 TTCATCCATATATATCCGGATAGACCAAATTCAGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGA
579 TTCATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGA
* *
71810199 TTAGTAGATTTTACGTACGCGAACATTTATCAAGGTAAGTTCGTGTAACTAAATTATGTATATTT
644 TTAGTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTT
71810264 ACATGCTTGAATTAAATGTTTACTTGATCTGTATATTTCGAT
709 ACATGCTTGAATTAAATGTTTACTTGATCTGTATATTTCGAT
* *
71810306 AATTGGAAAGTGAAATAATAAATGATGATAAATGATTAAAAAA-ATCATCATATTATCATCTTTC
1 AATTGGAAAGTGAAATAATAAAAGATGATAAATGATAAAAAAATATCATCATATTATCATCTTTC
* *
71810370 CCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTAACCA
66 CCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGATCA
* *
71810435 ATTAGGTAAGTGTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTTA
131 ATTAGGT-ATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTTA
* * *
71810500 ACTATCTCAAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAATATAAA
195 ACTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAGA
*
71810565 TGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAAAAAACTTTTGTTAAGT
260 TGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGAT-AAACAACTTTTGTTAAGT
* *
71810630 GAATTTTGATGAAATTGTGATTTAGGGACTAATTTTTAAAGATGTAAAATTCATGGAAAATTTCT
324 GAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTCT
*
71810695 ATATTTTTTGAAATACATGGGTTTTAAATATTATATGAAAAATTTGGTTAGGCTTGCAATAAGGA
389 A-ATTTTTTGAAATACATGGGTTTTAAATATTATATGAAAAATTTGGTTAGGCTTGGAATAAGGA
* * *
71810760 TTAAATTGCATGAATTTCAT-TTTCCAAGTCTAGGGATGAAATTGGAATTAATTAAAAGTTTAGG
453 TTAAATTGCATGAATTTCATATTT-CGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTAGG
*
71810824 AGCAAAACGATAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATT
517 AGCAAAAAG-TAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATT
* **
71810889 CATTCATATAGATCCAGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTTGGATT
581 CATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGATT
*
71810954 AGTAGATTTTACGTACACAAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTAC
646 AGTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTAC
* *
71811019 ATGCTTGAATGAAATGTTTACTTGATCTGTATATTTCGGT
711 ATGCTTGAATTAAATGTTTACTTGATCTGTATATTTCGAT
71811059 AATTGGAAAGTGAAATAATAAAAGATGATAAATGATGAAGAAAAATATCATCATATTATCATCTT
1 AATTGGAAAGTGAAATAATAAAAGATGATAAATGAT-AA-AAAAATATCATCATATTATCATCTT
*
71811124 TCCCATAACAAAAACCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGAT
64 TCCCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGAT
* *
71811189 CAATTAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTATCTGAGATCGTAATCGCTTAATTT
129 CAATTAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTT
*
71811254 AACTATCTCGGGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAG
194 AACTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAG
*
71811319 ATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGA
259 ATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGT
* *
71811384 GAATTTTGATGAACTTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTTT
324 GAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTCT
* * * *
71811449 GAATTTTGTGTAATACATGGGTTGTAAATATTATATGAAAAATTTGTTTAGGCTTGGAATAAGGA
389 -AATTTTTTGAAATACATGGGTTTTAAATATTATATGAAAAATTTGGTTAGGCTTGGAATAAGGA
* *
71811514 TTAAATTTCATGAATTTCATATTTCGAGCCTAAGGACGAAATTGGAATTAATTAAAAGTTTAGGA
453 TTAAATTGCATGAATTTCATATTTCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTAGGA
*
71811579 GCAAAATAGTAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTGAAATTC
518 GCAAAA-AGTAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATTC
* ** *
71811644 ATTCATATAGATTCGGATAGATTAAATTCGGAGTTAGAACGAGGACAAGAGAAAGTGTCAGATTA
582 ATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGATTA
* * * ** *
71811709 GTAGATTTTACATATATGAACATTTGTTGAGGTAAGTTCGTGTAACTAAATTATGTATATCTACA
647 GTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTACA
*
71811774 TGCTTGAATTTAATGTTTACTTGATCTGTATATT
712 TGCTTGAATTAAATGTTTACTTGATCTGTATATT
71811808 ACATACCGAA
Statistics
Matches: 1397, Mismatches: 93, Indels: 26
0.92 0.06 0.02
Matches are distributed among these distances:
751 4 0.00
752 163 0.12
753 448 0.32
754 402 0.29
755 250 0.18
756 130 0.09
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.35
Consensus pattern (750 bp):
AATTGGAAAGTGAAATAATAAAAGATGATAAATGATAAAAAAATATCATCATATTATCATCTTTC
CCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGATCA
ATTAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTTAA
CTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAGAT
GAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGTGA
ATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTCTAA
TTTTTTGAAATACATGGGTTTTAAATATTATATGAAAAATTTGGTTAGGCTTGGAATAAGGATTA
AATTGCATGAATTTCATATTTCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTAGGAGCA
AAAAGTAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATTCATTC
ATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGATTAGTAG
ATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTACATGCT
TGAATTAAATGTTTACTTGATCTGTATATTTCGAT
Found at i:71816318 original size:40 final size:40
Alignment explanation
Indices: 71816224--71816368 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
71816214 TACTCGAATG
* *
71816224 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
71816265 ACATCCGGACTAAGAT-TCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
71816305 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
71816345 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
71816369 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:71818986 original size:94 final size:94
Alignment explanation
Indices: 71818825--71819013 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 94
71818815 TCTATAGTAT
71818825 GATAGTAATCTCATATAAAAATTTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
1 GATAGTAATCTCATATAAAAATTTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
71818890 GACCAAATTTCACAAATTGCAAAAGTTGA
66 GACCAAATTTCACAAATTGCAAAAGTTGA
*
71818919 GATAGTAATGTCATATAAAAATTTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
1 GATAGTAATCTCATATAAAAATTTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
71818984 GACCAAATTTCACAAATTGCAAAAGTTGA
66 GACCAAATTTCACAAATTGCAAAAGTTGA
71819013 G
1 G
71819014 TTCTAATAGT
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (94 bp):
GATAGTAATCTCATATAAAAATTTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
GACCAAATTTCACAAATTGCAAAAGTTGA
Found at i:71820391 original size:23 final size:26
Alignment explanation
Indices: 71820364--71820421 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
71820354 AGCTTAGATA
71820364 AGCTTCCT-AAT-A-GGCTCTTTGTG
1 AGCTTCCTGAATAATGGCTCTTTGTG
*
71820387 AGCTTCCTGATTAATGGCTCTTTGTG
1 AGCTTCCTGAATAATGGCTCTTTGTG
*
71820413 AGTTTCCTG
1 AGCTTCCTG
71820422 TTATATGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 8 0.27
24 2 0.07
25 1 0.03
26 19 0.63
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (26 bp):
AGCTTCCTGAATAATGGCTCTTTGTG
Found at i:71820409 original size:26 final size:25
Alignment explanation
Indices: 71820371--71820429 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 25
71820361 ATAAGCTTCC
71820371 TAATAGGCTCTTTGTGAGCTTCCTGAT
1 TAAT-GGCTCTTTGTGAGCTTCCTG-T
*
71820398 TAATGGCTCTTTGTGAGTTTCCTGT
1 TAATGGCTCTTTGTGAGCTTCCTGT
71820423 TATATGG
1 TA-ATGG
71820430 ATCGAGAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 3 0.10
26 23 0.77
27 4 0.13
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44
Consensus pattern (25 bp):
TAATGGCTCTTTGTGAGCTTCCTGT
Found at i:71821447 original size:13 final size:13
Alignment explanation
Indices: 71821429--71821455 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71821419 TAAGTAATCG
71821429 CACACGGGCGTGT
1 CACACGGGCGTGT
71821442 CACACGGGCGTGT
1 CACACGGGCGTGT
71821455 C
1 C
71821456 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:71823593 original size:11 final size:11
Alignment explanation
Indices: 71823577--71823604 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
71823567 AGGTGTTTCA
71823577 CAAGATCATCC
1 CAAGATCATCC
71823588 CAAGATCATCC
1 CAAGATCATCC
71823599 CAAGAT
1 CAAGAT
71823605 GGATTCAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.32, G:0.11, T:0.18
Consensus pattern (11 bp):
CAAGATCATCC
Found at i:71829578 original size:25 final size:25
Alignment explanation
Indices: 71829550--71829611 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
71829540 GTGAGCCATG
71829550 TAACGGGAAGCTTATCCAGGCTGTA
1 TAACGGGAAGCTTATCCAGGCTGTA
*
71829575 TAACGGGAAGCTTATCCGGGCTGTA
1 TAACGGGAAGCTTATCCAGGCTGTA
71829600 TAACGGGAAGCT
1 TAACGGGAAGCT
71829612 CATAAGAGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (25 bp):
TAACGGGAAGCTTATCCAGGCTGTA
Found at i:71844606 original size:39 final size:39
Alignment explanation
Indices: 71844517--71844654 Score: 262
Period size: 39 Copynumber: 3.6 Consensus size: 39
71844507 ACATCGGTTA
71844517 TAGTAACTCGCACAAATGCCTTCGGGCTTA-CCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
71844554 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
71844593 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
71844632 TAGTAACTCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC
71844655 AAATGCTTAG
Statistics
Matches: 99, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
37 30 0.30
38 5 0.05
39 64 0.65
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
Found at i:71852635 original size:39 final size:39
Alignment explanation
Indices: 71852514--71852684 Score: 236
Period size: 39 Copynumber: 4.3 Consensus size: 39
71852504 GCTACTCGTT
* * *
71852514 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
71852554 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
71852594 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* *
71852633 CAAATGCCTTCGGGCTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
71852672 CAAATGCCTTCGG
1 CAAATGCCTTCGG
71852685 ATATTAGTCC
Statistics
Matches: 121, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 71 0.59
40 48 0.40
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:71865146 original size:43 final size:43
Alignment explanation
Indices: 71865097--71865309 Score: 192
Period size: 43 Copynumber: 5.0 Consensus size: 43
71865087 ATTACTGAGA
71865097 TGTGATTACATGTAAGAATATGTCTAGGG-CATTGGCATTGT-T
1 TGTGATTACATGTAAGAATATGTCT-GGGACATTGGCATTGTAT
**
71865139 TGGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 T-GTGATTACATGTAAGAATATGTCTGGGACATTGGCATTGTAT
* *
71865183 TGTGATTACGTGTAAG-ATCATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGAAT-ATGTCTGGGACATTGGCATTG-TAT
* * * * *
71865227 T-CGATTTCGTGTAAGACCT-TGTCTGGGACAGTGGCATTG-AT
1 TGTGATTACATGTAAGA-ATATGTCTGGGACATTGGCATTGTAT
* *
71865268 ATGTGATAACATGTAAGACCATAT-T-TGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGA--ATATGTCTGGGACATTGGCATTGTA
71865310 CGAGCTATTG
Statistics
Matches: 142, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
41 2 0.01
42 13 0.09
43 116 0.82
44 9 0.06
45 2 0.01
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGAATATGTCTGGGACATTGGCATTGTAT
Found at i:71865242 original size:86 final size:84
Alignment explanation
Indices: 71865096--71865285 Score: 233
Period size: 86 Copynumber: 2.2 Consensus size: 84
71865086 GATTACTGAG
*
71865096 ATGTGATTACATGTAAGAATATGTCTAGGGCATTGGCATTGTTTGGTGATTACATGTAAGACCAT
1 ATGTGATTACATGTAAG-ATATGTCTAGGGCATTGGCATCGTTT-GTGATTACATGTAAGACCAT
*
71865161 GTCTGGGACATTGGCATTG-T
64 GTCTGGGACAGTGGCATTGAT
* * *
71865181 ATTGTGATTACGTGTAAGATCATGTCT-GGGACATTGGCATCGTTAT-TCGATTTCGTGTAAGAC
1 A-TGTGATTACATGTAAGAT-ATGTCTAGGG-CATTGGCATCGTT-TGT-GATTACATGTAAGAC
*
71865244 CTTGTCTGGGACAGTGGCATTGAT
61 CATGTCTGGGACAGTGGCATTGAT
*
71865268 ATGTGATAACATGTAAGA
1 ATGTGATTACATGTAAGA
71865286 CCATATTTGG
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
85 7 0.08
86 81 0.89
87 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.35
Consensus pattern (84 bp):
ATGTGATTACATGTAAGATATGTCTAGGGCATTGGCATCGTTTGTGATTACATGTAAGACCATGT
CTGGGACAGTGGCATTGAT
Found at i:71876067 original size:13 final size:13
Alignment explanation
Indices: 71876049--71876077 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
71876039 TTTAGTTTAA
71876049 TTAGTTAATTAGT
1 TTAGTTAATTAGT
71876062 TTAGTTAATTAGT
1 TTAGTTAATTAGT
71876075 TTA
1 TTA
71876078 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:71882598 original size:49 final size:47
Alignment explanation
Indices: 71882487--71882970 Score: 790
Period size: 47 Copynumber: 10.1 Consensus size: 47
71882477 TATGAAATGA
71882487 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
71882534 TGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
71882583 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
71882630 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
71882679 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
*
71882728 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
71882775 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
71882821 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
71882868 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
71882917 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
71882964 TGATAAG
1 TGATAAG
71882971 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 16, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 45 0.11
47 189 0.46
49 180 0.43
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:71882610 original size:96 final size:96
Alignment explanation
Indices: 71882487--71882970 Score: 793
Period size: 96 Copynumber: 5.1 Consensus size: 96
71882477 TATGAAATGA
*
71882487 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
71882552 GATGTGATGAATGTGAAAGTGTATATATATG
66 GATGTGATGAATGTGAAAGTGTATATATATG
71882583 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
71882648 GATGTGATGAATGTGAAAGTGTATATATATG
66 GATGTGATGAATGTGAAAGTGTATATATATG
*
71882679 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
71882744 CCGATGTGATGAATGTGAAAGTG--TATATATG
64 CCGATGTGATGAATGTGAAAGTGTATATATATG
71882775 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
71882839 GATGTGATGAATGTGAAAGTG--TATATATG
66 GATGTGATGAATGTGAAAGTGTATATATATG
* * * * *
71882868 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
* * *
71882933 CCAACGTGATGGATGTGAAAGTGTATA-A-ATG
64 CCGATGTGATGAATGTGAAAGTGTATATATATG
71882964 TGATAAG
1 TGATAAG
71882971 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 11, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
93 58 0.16
94 33 0.09
95 34 0.09
96 196 0.53
97 1 0.00
98 48 0.13
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATATG
Found at i:71883145 original size:37 final size:37
Alignment explanation
Indices: 71883089--71883167 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
71883079 CCGAGCTCTA
* * * *
71883089 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
71883126 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
71883163 AAGAC
1 AAGAC
71883168 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:71897667 original size:47 final size:47
Alignment explanation
Indices: 71897596--71897689 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
71897586 AAATAAATGA
*
71897596 AAGTTTTAGGCAGCTAGGGGCTCAAGTATAAATTGGCTAAGCATGGG
1 AAGTTTTAGGCAGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
*
71897643 AAGTTTTAGGCTGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
1 AAGTTTTAGGCAGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
71897690 TTAAATTGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTTTTAGGCAGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
Found at i:71898317 original size:43 final size:43
Alignment explanation
Indices: 71898118--71898327 Score: 212
Period size: 43 Copynumber: 4.9 Consensus size: 43
71898108 GATTACCGAG
* *
71898118 ATGTGATTACATGTAAGACCATGTCTGAGACATTGGCAT-TAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * *
71898160 ATTGTGATTACATTTAAGACCATGTCTGAGACATTGGCATTG-T
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
71898203 ATTGTGATTACGTGTAAGACCATGTATGGGACATTAGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
71898247 AT-TCGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGAT
1 ATGT-GATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
71898290 ATGTGATAACATGTAATACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
71898328 TGTATGAGCT
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
42 8 0.06
43 131 0.92
44 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:71919612 original size:39 final size:40
Alignment explanation
Indices: 71919499--71919667 Score: 243
Period size: 40 Copynumber: 4.2 Consensus size: 40
71919489 TTCAAATGAT
* *
71919499 ATCCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
71919539 ATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
71919579 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
71919618 ATCTGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
71919659 A-CCGGGCTA
1 ATCCGGGCTA
71919668 TGTAAGGCAT
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 79 0.68
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:71919664 original size:79 final size:79
Alignment explanation
Indices: 71919512--71919667 Score: 242
Period size: 79 Copynumber: 2.0 Consensus size: 79
71919502 CGGGTTAGGT
* * **
71919512 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
*
71919577 AATTCCGGGCTAAG
66 AATACCGGGCTAAG
*
71919591 CCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
71919656 -ATAACCGGGCTA
66 AAT-ACCGGGCTA
71919668 TGTAAGGCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
78 2 0.03
79 68 0.97
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
AATACCGGGCTAAG
Found at i:71921770 original size:30 final size:30
Alignment explanation
Indices: 71921736--71921795 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
71921726 CTTTGATATG
*
71921736 AACTTTGGAAAAATTACATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
71921766 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
71921796 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:71925977 original size:13 final size:13
Alignment explanation
Indices: 71925959--71925985 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71925949 GCTCGACACG
71925959 GACACGCCCGTGT
1 GACACGCCCGTGT
71925972 GACACGCCCGTGT
1 GACACGCCCGTGT
71925985 G
1 G
71925986 CGACTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:71928240 original size:13 final size:13
Alignment explanation
Indices: 71928219--71928258 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
71928209 GATGAAAAGT
*
71928219 TGAAATGTTTGAA
1 TGAAGTGTTTGAA
71928232 TGAAGTGTTTGAA
1 TGAAGTGTTTGAA
71928245 TGAAGTGTTTGAA
1 TGAAGTGTTTGAA
71928258 T
1 T
71928259 CAAGGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.40
Consensus pattern (13 bp):
TGAAGTGTTTGAA
Found at i:71932471 original size:39 final size:39
Alignment explanation
Indices: 71932428--71932642 Score: 308
Period size: 39 Copynumber: 5.5 Consensus size: 39
71932418 GTGTGAGATA
* *
71932428 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
71932467 TATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
71932506 TATATCTGAGCTAAGTCTCGAAGGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
71932545 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
71932584 TATATCC-GGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
71932621 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
71932643 CATGCTTTTT
Statistics
Matches: 157, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
37 18 0.11
38 20 0.13
39 111 0.71
40 8 0.05
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:71936503 original size:28 final size:28
Alignment explanation
Indices: 71936463--71936551 Score: 160
Period size: 28 Copynumber: 3.2 Consensus size: 28
71936453 ACAAGAATTT
71936463 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
71936491 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
* *
71936519 CCCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
71936547 CCCTA
1 CCCTA
71936552 GGGTTAATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCTATGTATGCAAAATTACCATTATAC
Found at i:71936698 original size:28 final size:27
Alignment explanation
Indices: 71936657--71936736 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 27
71936647 AAGAAGCGTC
71936657 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
71936685 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
71936712 CTGGTGGCACTACCACAAAATATCT
1 CTGGTGGCACTGCCAC-AAATATCT
71936737 ATATCTAGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
27 22 0.49
28 23 0.51
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:71936715 original size:27 final size:28
Alignment explanation
Indices: 71936657--71936736 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 28
71936647 AAGAAGCGTC
71936657 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
71936685 CTGGTGGCCCTGCCACATA-TATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* *
71936712 CTGGTGGCACTACCACAAAATATCT
1 CTGGTGGCACTGCCACAAATTATCT
71936737 ATATCTAGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
27 24 0.53
28 21 0.47
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:71941834 original size:43 final size:44
Alignment explanation
Indices: 71941786--71941976 Score: 203
Period size: 43 Copynumber: 4.4 Consensus size: 44
71941776 TACCGAGATG
*
71941786 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
* * *
71941829 TGATTACATGTAAGACCATGTTTGGGACATTAGCATTG-TATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
* * *
71941872 TGATTACATGTAAGATCATGCCTGGGACATTAGCATCGTTATTCA
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATT-A
* * * * * * *
71941917 --ATTTCGTGTAAAACCATGTCTAGGACAATGGAATCGATATT-
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
*
71941958 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
71941977 ATATGGGATA
Statistics
Matches: 121, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
43 117 0.97
44 4 0.03
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
Found at i:71943944 original size:12 final size:12
Alignment explanation
Indices: 71943927--71943952 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71943917 TTATTATAGT
71943927 AAATGATAATTA
1 AAATGATAATTA
71943939 AAATGATAATTA
1 AAATGATAATTA
71943951 AA
1 AA
71943953 CGAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AAATGATAATTA
Found at i:71947001 original size:21 final size:21
Alignment explanation
Indices: 71946971--71947011 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
71946961 GGAAATTGTG
**
71946971 ATTTAAAGAGAGCTTTGAGAA
1 ATTTAAAGAGAAATTTGAGAA
*
71946992 ATTTAGAGAGAAATTTGAGA
1 ATTTAAAGAGAAATTTGAGA
71947012 GCTTTTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (21 bp):
ATTTAAAGAGAAATTTGAGAA
Found at i:71949401 original size:37 final size:37
Alignment explanation
Indices: 71949336--71949481 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
71949326 AGCTCAGACG
* *
71949336 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
71949373 AAATCTCCACATGTAGTCATCAGCTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
71949410 TAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71949447 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
71949482 ATATATTTCC
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:71949753 original size:48 final size:48
Alignment explanation
Indices: 71949627--71949811 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
71949617 GCACATCGCC
*
71949627 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
71949677 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
71949725 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
71949773 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
71949812 TGCATGTTAA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:71949816 original size:98 final size:97
Alignment explanation
Indices: 71949627--71949810 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
71949617 GCACATCGCC
*
71949627 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
71949692 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
71949725 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
71949788 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
71949811 ATGCATGTTA
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 45 0.56
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:71949860 original size:47 final size:47
Alignment explanation
Indices: 71949781--71949974 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
71949771 CATACATATT
* * * * *
71949781 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTAATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
71949828 CCACATTGGCCATTCGGCCTTATCACACATATGAATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71949875 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
71949922 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71949969 TCACAT
1 TCACAT
71949975 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71949901 original size:22 final size:22
Alignment explanation
Indices: 71949874--71949945 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
71949864 GCTCACATTC
71949874 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
71949896 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
71949920 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
71949943 ATC
1 ATC
71949946 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:71949975 original size:25 final size:25
Alignment explanation
Indices: 71949896--71949975 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
71949886 ATTCGGCCTT
**
71949896 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
71949921 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
71949943 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
71949968 ATCACATA
1 ATCACATA
71949976 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 6 0.15
25 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:71953873 original size:40 final size:40
Alignment explanation
Indices: 71953825--71954072 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
71953815 GCCCGAATAC
* * * *
71953825 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * * *
71953865 ATAACACCAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
71953905 ACATCACTAGCACGAGTGCTCTTCGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
71953945 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
71953985 ACATCACTAGCACGAATGCTCTTTGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
71954025 ACATCACTGGCACGAATGCTCTTCGGGACTTAGCCCAGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
71954065 ACATCACT
1 ACATCACT
71954073 CTCAATTCTC
Statistics
Matches: 190, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 190 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:71955401 original size:37 final size:37
Alignment explanation
Indices: 71955342--71955487 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
71955332 AGCTCAGACG
* *
71955342 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71955379 AAATCTCCATACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71955416 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
71955453 TAATCTCCACACGTAGTCATCGTGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
71955488 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:71955761 original size:48 final size:49
Alignment explanation
Indices: 71955633--71955771 Score: 183
Period size: 52 Copynumber: 2.8 Consensus size: 49
71955623 GCACATCGCC
*
71955633 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC--A-A
* *
71955685 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCAGCTTTACCACATATACATATCTCAA
* *
71955733 TACATATTTCACATTAGCCTTTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
71955772 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
48 34 0.44
49 1 0.01
51 1 0.01
52 42 0.54
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCAA
Found at i:71955813 original size:25 final size:25
Alignment explanation
Indices: 71955785--71955860 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 25
71955775 ATGTTCATAT
71955785 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* *
71955810 TCA-CACATAT-G-CATTC-TCACAT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
71955832 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
71955857 TCAC
1 TCAC
71955861 ATATATGCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 14
0.67 0.09 0.24
Matches are distributed among these distances:
22 5 0.13
23 13 0.33
24 13 0.33
25 8 0.21
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:71955820 original size:47 final size:47
Alignment explanation
Indices: 71955741--71955934 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
71955731 CATACATATT
* * * * *
71955741 TCACATTAGCCTTTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
71955788 CCACATTGGCCATTCGGCCTTATCACACATATGCAT-TCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACATTCA
71955835 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
71955882 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71955929 TCACAT
1 TCACAT
71955935 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 1 0.01
47 131 0.98
48 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71955825 original size:23 final size:23
Alignment explanation
Indices: 71955798--71955870 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
71955788 CCACATTGGC
71955798 CATTCGGCCTTATCACACATATG
1 CATTCGGCCTTATCACACATATG
* *
71955821 CATTC-TCACAT-TCATCACAT-TGG
1 CATTCGGC-CTTATCA-CACATAT-G
*
71955844 CCATTCGGCCTTATCACATATATG
1 -CATTCGGCCTTATCACACATATG
71955868 CAT
1 CAT
71955871 GTTCACATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 5 0.13
23 16 0.42
24 12 0.32
25 5 0.13
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (23 bp):
CATTCGGCCTTATCACACATATG
Found at i:71955851 original size:94 final size:93
Alignment explanation
Indices: 71955694--71955934 Score: 290
Period size: 94 Copynumber: 2.5 Consensus size: 93
71955684 ATATATATTT
* * * * *
71955694 CACATTGACCATTCAGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCTTTCG
1 CACATTGGCCATTCGGCCTTATCCACATATGCAT-TCTC--ACAT-TCATCACATTAGCCATTCG
* *
71955757 GCTTTACCACATATATGCATGTTCATATTCAC
62 GCCTTACCACATATATGCATGTTCACATTCAC
*
71955789 CACATTGGCCATTCGGCCTTATCACACATATGCATTCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATTCTCACATTCATCACATTAGCCATTCGGCC
* *
71955854 TTATCACATATATGCATGTTCACATTCAT
65 TTACCACATATATGCATGTTCACATTCAC
* *
71955883 CACATTGGCCATTCGGCCTTATCTCATATATGCACAT-TCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATGCA-TTCTCACATTCATCACAT
71955935 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
93 1 0.01
94 93 0.72
95 19 0.15
96 5 0.04
97 11 0.09
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATTCTCACATTCATCACATTAGCCATTCGGCCT
TACCACATATATGCATGTTCACATTCAC
Found at i:71955935 original size:25 final size:25
Alignment explanation
Indices: 71955856--71955935 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
71955846 ATTCGGCCTT
**
71955856 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
71955881 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
71955903 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
71955928 ATCACATA
1 ATCACATA
71955936 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 6 0.15
25 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:71967192 original size:76 final size:76
Alignment explanation
Indices: 71967066--71967217 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 76
71967056 CTCTTTAAGA
*
71967066 CCTTCTAATTAATAATCTAAAGCAATTTCATGTAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
1 CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
71967131 ATTCAATTTGG
66 ATTCAATTTGG
*
71967142 CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAGGTTTTGCAATTT
1 CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
71967207 ATTCAATTTGG
66 ATTCAATTTGG
71967218 TCCCTAATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (76 bp):
CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
ATTCAATTTGG
Found at i:71972570 original size:47 final size:46
Alignment explanation
Indices: 71972458--71972774 Score: 236
Period size: 47 Copynumber: 6.7 Consensus size: 46
71972448 GATTTCTTGT
* * * * **
71972458 GTGCCAGTGTAAGACATGTCCGGGACATGCATAGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGACGATGA
* * *
71972504 GTGCCAGAGTAAGACCATGTATGGGACATGTCATTGGCGTAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGC-TAGACGATGA
*
71972552 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTAGACGATGA
* * *
71972599 -TAGCCAGTGTAAGACGTGGCTGGGACATGCATCGGCTA-A-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGACGATG-A
* * *
71972643 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-ACGTA-TATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-G-ACGAT--GA
* * * * **
71972691 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTAGACGATGA
71972740 -TAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
71972775 AGTAACTTAT
Statistics
Matches: 222, Mismatches: 29, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
43 2 0.01
44 32 0.14
45 2 0.01
46 26 0.12
47 64 0.29
48 35 0.16
49 50 0.23
50 7 0.03
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGACGATGA
Found at i:71972719 original size:49 final size:49
Alignment explanation
Indices: 71972645--71972776 Score: 171
Period size: 49 Copynumber: 2.7 Consensus size: 49
71972635 TAAGAGTTGT
71972645 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CACGTATATACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACG-ATA-ACGAGA
* * * * *
71972693 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATAACGAGA
*
71972742 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG
71972777 TAACTTATCC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
48 11 0.15
49 50 0.68
50 9 0.12
51 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATAACGAGA
Found at i:71973590 original size:29 final size:28
Alignment explanation
Indices: 71973557--71973611 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
71973547 ACTAGGATTT
71973557 TCACACAGCCAAGCAAACGCCCGTGTCCC
1 TCACACAGCCAAG-AAACGCCCGTGTCCC
* * *
71973586 TCACACTGCCTAGACACGCCCGTGTC
1 TCACACAGCCAAGAAACGCCCGTGTC
71973612 AGAAACCCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.24, C:0.44, G:0.18, T:0.15
Consensus pattern (28 bp):
TCACACAGCCAAGAAACGCCCGTGTCCC
Found at i:71976329 original size:27 final size:27
Alignment explanation
Indices: 71976298--71976475 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71976288 TAAATTGTAC
71976298 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71976325 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71976351 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71976379 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71976407 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71976434 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71976461 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71976476 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71976412 original size:82 final size:81
Alignment explanation
Indices: 71976299--71976454 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71976289 AAATTGTACA
* *
71976299 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71976363 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71976380 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71976445 TGCGAGTTGA
65 TGCGAATTGA
71976455 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71976466 original size:82 final size:81
Alignment explanation
Indices: 71976295--71976475 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71976285 GATTAAATTG
* *
71976295 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71976360 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71976376 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71976440 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71976458 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71976476 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71984462 original size:27 final size:27
Alignment explanation
Indices: 71984431--71984605 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
71984421 TAAATTGTAC
71984431 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71984458 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71984484 ATGCACTAAGTGTGCGAATTGACCA-GC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71984511 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71984539 AGCACTAA--GTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71984564 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71984591 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71984606 GACTCAATAT
Statistics
Matches: 123, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
25 17 0.14
26 22 0.18
27 76 0.62
28 8 0.07
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72094938 original size:40 final size:40
Alignment explanation
Indices: 72094854--72095077 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
72094844 TTGAATGATG
* * * *
72094854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
72094894 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
72094934 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72094972 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72095012 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72095053 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72095078 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72095072 original size:80 final size:80
Alignment explanation
Indices: 72094854--72095077 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
72094844 TTGAATGATG
* * * * *
72094854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
72094917 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
72094934 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
72094996 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
72095012 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
72095077 G
66 G
72095078 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:72098483 original size:50 final size:49
Alignment explanation
Indices: 72098353--72098553 Score: 185
Period size: 47 Copynumber: 4.1 Consensus size: 49
72098343 ACTGAAGCTC
*
72098353 TCTAGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAA
1 TCTAGTACAC-TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* * *
72098403 TCTAGTACAC--GTAGCCTACACTTAGTACTACACACGTGACTTAACCA
1 TCTAGTACACTAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* * * * *
72098450 TCT-GATACACGTAGTAGCCTCCAGTTAGTACTACACATGTGATCGAAGTTAA
1 TCTAG-TACAC-TAGTAGCCTACACTTAGTACTACACATGTGACCTAA--CAA
** * * * *
72098502 T-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTAGTACAC-TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
72098551 TCT
1 TCT
72098554 TGTGACAGCC
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
46 1 0.01
47 41 0.34
49 3 0.03
50 38 0.32
51 34 0.28
52 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TCTAGTACACTAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
Found at i:72100975 original size:54 final size:48
Alignment explanation
Indices: 72100876--72101266 Score: 620
Period size: 48 Copynumber: 7.9 Consensus size: 48
72100866 AATATATATG
*
72100876 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
72100924 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
72100972 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATAAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
72101020 TATGTGGTAAAGCCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGT------AAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
72101074 TATGTGGTAAAGCCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGT------AAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
72101128 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
* *
72101176 TATGTGGTAAAGTCGAATGGCTAGTGTGAAATATATATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
* *
72101224 TATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
72101267 GTGTGTATAT
Statistics
Matches: 328, Mismatches: 9, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
48 227 0.69
54 101 0.31
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
Found at i:72101234 original size:204 final size:198
Alignment explanation
Indices: 72100884--72101266 Score: 658
Period size: 204 Copynumber: 1.9 Consensus size: 198
72100874 TGTATGTGGT
72100884 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
72100949 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATAAGA
66 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATAAGA
*
72101014 TATGTATATGTGGTAAAGCCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
131 TATGTATATGTGGT------AAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATGT
72101079 GGTAAAGCC
190 GGTAAAGCC
*
72101088 AAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
72101153 GTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATATATGAGA
66 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATAAGA
*
72101218 TATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGAGAT
131 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
72101267 GTGTGTATAT
Statistics
Matches: 173, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
198 33 0.19
204 140 0.81
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (198 bp):
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATAAGA
TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATGTGGTAAA
GCC
Found at i:72101462 original size:37 final size:37
Alignment explanation
Indices: 72101407--72101509 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
72101397 GGAAATATAT
72101407 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
72101444 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72101481 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
72101510 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72107524 original size:26 final size:26
Alignment explanation
Indices: 72107488--72107540 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
72107478 CAAAGTTTTA
72107488 ACTTAATTTCATCAAAACCTTGTTCC
1 ACTTAATTTCATCAAAACCTTGTTCC
72107514 ACTTAATTTCATCAAAACCTTGTTCC
1 ACTTAATTTCATCAAAACCTTGTTCC
72107540 A
1 A
72107541 AGGCTTCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (26 bp):
ACTTAATTTCATCAAAACCTTGTTCC
Found at i:72109392 original size:23 final size:26
Alignment explanation
Indices: 72109361--72109419 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
72109351 AAAACAATAG
72109361 ATAATAAATAA-TATT-AATATAT-AT
1 ATAA-AAATAATTATTCAATATATAAT
* *
72109385 ATTAAAATAATTTTTCAATATATAAT
1 ATAAAAATAATTATTCAATATATAAT
72109411 ATAAAAATA
1 ATAAAAATA
72109420 GGGTAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 6 0.21
24 6 0.21
25 7 0.24
26 10 0.34
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (26 bp):
ATAAAAATAATTATTCAATATATAAT
Found at i:72111474 original size:210 final size:210
Alignment explanation
Indices: 72110997--72111974 Score: 1332
Period size: 210 Copynumber: 4.7 Consensus size: 210
72110987 AATCTGCTTC
* ** *
72110997 TTCGATTTGTTTTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
* * * * * * *
72111062 TGAAAGCTAAATCAGCTATGTCTTTGATTTGCTCCTTG--TAAGCACA-AG-GATGCCAA-ATC-
66 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAA-TACAGAGAGAT---AAGATCT
* * * * * * * *
72111121 --C-TCTTGGATTTTGTTTCAGTC-TAATCGTCTGAAGGTCAGATCTACTATGTATCTGCAC-TC
127 GTCATCTTGGA-TCTGCTTCAG-CGTAAACATCTGAAAGTGAGATCTGCTATGTGTCTGC-CTTC
* ** * *
72111181 TATTGAAGTAGAGATGCCAGAA
189 CATCAAAGTGGAAATGCCAGAA
* * * * *
72111203 TTTGATTTGTTCTCTAACAATGCAGAGACGAAAAATCATCTTAGATTTGCTTCATCGTAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
*
72111268 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCA
66 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCA
* * *
72111333 TCTTGGATCTACTTCAGCATAAACATCTGAAAGTGAGATCTGCTATCTGTCTGCCTTCCATCAAA
131 TCTTGGATCTGCTTCAGCGTAAACATCTGAAAGTGAGATCTGCTATGTGTCTGCCTTCCATCAAA
*
72111398 GTGGAAATGCCAGAC
196 GTGGAAATGCCAGAA
* *
72111413 TTCGATTTGTTCTCTGACAATATAGAGGCGACAAATCATCTTAGATTTGCTTCACCGTAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
*
72111478 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCTGAATACAGAGAGATAAGATCTGTCA
66 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCA
* *
72111543 TCTTGGATCTGCTTCAGCGTAAACATCT-AAAGGTGAGGTCTACTATGTGTCTGCCTTCCATCAA
131 TCTTGGATCTGCTTCAGCGTAAACATCTGAAA-GTGAGATCTGCTATGTGTCTGCCTTCCATCAA
*
72111607 AGTGGAAATGCCAGAC
195 AGTGGAAATGCCAGAA
72111623 TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
*
72111688 TGAAATCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCA
66 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCA
* * * *
72111753 TCTTGGATCTGCTTCAGCGTAAACACCTGAAGGTGAGATCTGCTATGTGTCTACCTTCCATTAAA
131 TCTTGGATCTGCTTCAGCGTAAACATCTGAAAGTGAGATCTGCTATGTGTCTGCCTTCCATCAAA
*
72111818 GTGGAAATGCCAAAA
196 GTGGAAATGCCAGAA
* * * *
72111833 TTTGATTTGTTCTCTGACAATAAAGAGGCAACAAATCATCTTAGATTTGCTTCATCATAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
* *
72111898 TGAAAGCCAAATCAGCTATATCTCCGATCTGCTCCCTGCCGAATTCAGAGAGATAAGATCTGTCA
66 TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCA
72111963 TCTTGGATCTGC
131 TCTTGGATCTGC
72111975 CCCGATGAAG
Statistics
Matches: 695, Mismatches: 64, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
206 92 0.13
207 6 0.01
208 4 0.01
209 8 0.01
210 576 0.83
211 9 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (210 bp):
TTCGATTTGTTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTCATCGTAAACACG
TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCA
TCTTGGATCTGCTTCAGCGTAAACATCTGAAAGTGAGATCTGCTATGTGTCTGCCTTCCATCAAA
GTGGAAATGCCAGAA
Found at i:72114929 original size:17 final size:17
Alignment explanation
Indices: 72114907--72114950 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
72114897 TAGCATGTAC
72114907 TGTCTTAATCTTCGAGT
1 TGTCTTAATCTTCGAGT
72114924 TGTCTTAATCTTCGAGT
1 TGTCTTAATCTTCGAGT
*
72114941 TGTCTAAATC
1 TGTCTTAATC
72114951 AGCGCACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (17 bp):
TGTCTTAATCTTCGAGT
Done.