Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 212 of 311
Found at i:72856952 original size:21 final size:21
Alignment explanation
Indices: 72856926--72856966 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72856916 TTCTTCTTCT
72856926 TTCTTC-CCATTTTTATTTTTG
1 TTCTTCTCC-TTTTTATTTTTG
*
72856947 TTCTTCTTCTTTTTATTTTT
1 TTCTTCTCCTTTTTATTTTT
72856967 ATATTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.73
Consensus pattern (21 bp):
TTCTTCTCCTTTTTATTTTTG
Found at i:72867151 original size:15 final size:15
Alignment explanation
Indices: 72867131--72867159 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
72867121 ACGCATAATA
72867131 ATACTAAATATATAC
1 ATACTAAATATATAC
72867146 ATACTAAATATATA
1 ATACTAAATATATA
72867160 TACATAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:72867242 original size:3 final size:3
Alignment explanation
Indices: 72867236--72867265 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
72867226 ATACTACTAC
72867236 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
72867266 GATGTATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:72867372 original size:22 final size:21
Alignment explanation
Indices: 72867347--72867394 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
72867337 TACGAAAATA
72867347 ATACTATATAA-AAAGTATATAT
1 ATACTATATAATAAA--ATATAT
72867369 ATAC-ATATAATAAAATATAT
1 ATACTATATAATAAAATATAT
72867389 ATACTA
1 ATACTA
72867395 AGATTAATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 10 0.42
21 7 0.29
22 7 0.29
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (21 bp):
ATACTATATAATAAAATATAT
Found at i:72868197 original size:14 final size:15
Alignment explanation
Indices: 72868170--72868204 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
72868160 TGATGACATT
72868170 AATAATAGATACTAA
1 AATAATAGATACTAA
72868185 AATAATA-ATACTAA
1 AATAATAGATACTAA
72868199 AATAAT
1 AATAAT
72868205 TAACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (15 bp):
AATAATAGATACTAA
Found at i:72870228 original size:89 final size:89
Alignment explanation
Indices: 72870126--72870629 Score: 551
Period size: 89 Copynumber: 5.6 Consensus size: 89
72870116 GCGTGAGCCA
* * *
72870126 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTG-AAACTTAATTTGAAAAGTC-GATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAATTTGAAAAG-CAGAAT
*
72870189 TTGAAAGTACCTCGACATGTGACCCG
65 TTGAAAATACCTCGACA-GTGACCCG
* *
72870215 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAACAGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACATAATTTGAAAAGCAGAAT
* * * * *
72870280 TTGAAAATAGCTCAAAACGTGAGCCA
65 TTGAAAATACCTCGACA-GTGACCCG
* * * * *
72870306 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCA-GATTTTACAAAGCAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAATTTGA-AAAGCAGAAT
72870370 TTGAAAATACCTCGACATGTGACCCG
65 TTGAAAATACCTCGACA-GTGACCCG
* ** ** *
72870396 AGGCTCAACTCATCTCTTACAATATGAGTTGATTTTTTTTGAAAAGCATAAACTGAAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAA-CATAATTTGAAAAGCAGAA
* * *
72870461 ATTGAAAATACCTC-AGC-GTGTCCTG
64 TTTGAAAATACCTCGA-CAGTGACCCG
* * * *
72870486 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAAGTAGAATTTGAAAAGCAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CATAATTTGAAAAGCAGAAT
72870551 TTGAAAATACCTCCG-C-GTG-CCCTG
65 TTGAAAATACCT-CGACAGTGACCC-G
*
72870575 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCATAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CATAATTTGAAA
72870630 TTACCTCAGC
Statistics
Matches: 353, Mismatches: 51, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
87 20 0.06
88 2 0.01
89 119 0.34
90 99 0.28
91 87 0.25
92 23 0.07
93 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (89 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAATTTGAAAAGCAGAATT
TGAAAATACCTCGACAGTGACCCG
Found at i:72870271 original size:14 final size:14
Alignment explanation
Indices: 72870252--72870286 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
72870242 GTTGATTTTT
*
72870252 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
72870266 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
72870280 TTGAAAA
1 TTGAAAA
72870287 TAGCTCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:72870321 original size:180 final size:177
Alignment explanation
Indices: 72870022--72870629 Score: 718
Period size: 180 Copynumber: 3.4 Consensus size: 177
72870012 TTTATTCTTA
* * ** * * * *
72870022 CTCGACATGTGATCCTGA-GCTCAACTTATTTCTCGCAATATGAATTGACTCTTT-AAAAACAGA
1 CTCGACATGTGA-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATA
* *
72870085 CATT-AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
65 AATTGAAAAACAGAAATTGAAAATAGCTCA-AGCGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
* *
72870149 ATGAGTTGGTTTTTTTGAAACTTAATTTGAAAAGTC-GATTTTGAAAGTAC
129 ATGAGTTGATTTTTTTGAAAC-TAATTTGAAAAG-CAGATTTTGAAAATAC
72870199 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATA
1 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATA
* * *
72870264 AATTGAAAAACAGAATTTGAAAATAGCTCAAAACGTGAGCCAAGGCTGAACTCACCTCTCGCAAT
65 AATTGAAAAACAGAAATTGAAAATAGCTC-AAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
*
72870329 ATGAGTTGATTTTTTTGAAAGC-AGATTTTACAAAGCAGATTTTGAAAATAC
129 ATGAGTTGATTTTTTTGAAA-CTA-ATTTGA-AAAGCAGATTTTGAAAATAC
* ** *
72870380 CTCGACATGTGACCCGAGGCTCAACTCATCTCTTACAATATGAGTTGATTTTTTTTGAAAAGCAT
1 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAAAACAT
* * * * *
72870445 AAACTGAAAAACAGAAATTGAAAATACCTC-AGCGTG-TCCTGAGGCTCAACTCACCTCTTGCAA
64 AAATTGAAAAACAGAAATTGAAAATAGCTCAAGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAA
* **
72870508 TATGAGTTGATTTTTTTGAAAAGTAGAATTTGAAAAGCAGAAATTGAAAATAC
128 TATGAGTTGATTTTTTTG-AAACT--AATTTGAAAAGCAGATTTTGAAAATAC
*
72870561 CTCCG-C--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGCAT
1 CT-CGACATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAT
72870621 AAATTGAAA
64 AAATTGAAA
72870630 TTACCTCAGC
Statistics
Matches: 378, Mismatches: 36, Indels: 35
0.84 0.08 0.08
Matches are distributed among these distances:
176 26 0.07
177 38 0.10
178 7 0.02
179 47 0.12
180 122 0.32
181 88 0.23
182 49 0.13
183 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (177 bp):
CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAA
ATTGAAAAACAGAAATTGAAAATAGCTCAAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAACTAATTTGAAAAGCAGATTTTGAAAATAC
Found at i:72870541 original size:14 final size:14
Alignment explanation
Indices: 72870522--72870557 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
72870512 AGTTGATTTT
*
72870522 TTTGAAAAGTAGAA
1 TTTGAAAAGCAGAA
72870536 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
72870550 ATTGAAAA
1 TTTGAAAA
72870558 TACCTCCGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.19, T:0.25
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:72870655 original size:73 final size:73
Alignment explanation
Indices: 72870536--72870698 Score: 265
Period size: 73 Copynumber: 2.2 Consensus size: 73
72870526 AAAAGTAGAA
*
72870536 TTTGAAAAGCAGAAATTGAAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
72870601 AGTTGATT
66 AGTTGATT
* * *
72870609 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
72870674 AGTTGATTTT
66 AGTTGA--TT
72870684 TTTGAAAA-CAGAAAT
1 TTTGAAAAGCAGAAAT
72870699 AAAAATATCA
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
73 67 0.81
74 6 0.07
75 10 0.12
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (73 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:72882869 original size:15 final size:15
Alignment explanation
Indices: 72882849--72882877 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
72882839 ATGCATAATA
72882849 ATACTAAATATATAC
1 ATACTAAATATATAC
72882864 ATACTAAATATATA
1 ATACTAAATATATA
72882878 TACATAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:72883884 original size:14 final size:15
Alignment explanation
Indices: 72883857--72883891 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
72883847 TGATGACATT
72883857 AATAATAGATACTAA
1 AATAATAGATACTAA
72883872 AATAATA-ATACTAA
1 AATAATAGATACTAA
72883886 AATAAT
1 AATAAT
72883892 TAACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (15 bp):
AATAATAGATACTAA
Found at i:72888495 original size:23 final size:23
Alignment explanation
Indices: 72888469--72888535 Score: 64
Period size: 27 Copynumber: 2.7 Consensus size: 23
72888459 GATGGATTAT
72888469 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGGAGG
*
72888492 ATTATATGATACT-GTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGGAGG
*
72888519 ATTATACTGGTGTGTTT
1 ATTATTCTGGTGTGTTT
72888536 TGGTTGGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
22 2 0.06
23 9 0.25
24 1 0.03
25 6 0.17
26 1 0.03
27 15 0.42
28 2 0.06
ACGTcount: A:0.18, C:0.04, G:0.31, T:0.46
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGGAGG
Found at i:72888495 original size:28 final size:28
Alignment explanation
Indices: 72888442--72888524 Score: 123
Period size: 27 Copynumber: 3.0 Consensus size: 28
72888432 CACTTTGTGC
72888442 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
72888471 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
72888499 GATACT-GTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
72888525 CTGGTGTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 19 0.38
28 13 0.26
29 18 0.36
ACGTcount: A:0.19, C:0.04, G:0.30, T:0.47
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:72888777 original size:21 final size:21
Alignment explanation
Indices: 72888727--72888834 Score: 119
Period size: 21 Copynumber: 5.1 Consensus size: 21
72888717 GGCTATACTG
* *
72888727 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
*
72888748 ATTTTAGGCACCTTGTGTGTCGT
1 A--TCAGGCACCTTGTGTGTCGT
*
72888771 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
* *
72888792 TTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
* *
72888813 TTCAGGCA-CTTATGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
72888833 AT
1 AT
72888835 ACTGATCAGG
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.14
21 47 0.62
23 18 0.24
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (21 bp):
ATCAGGCACCTTGTGTGTCGT
Found at i:72889964 original size:46 final size:46
Alignment explanation
Indices: 72889914--72890063 Score: 140
Period size: 46 Copynumber: 3.1 Consensus size: 46
72889904 TGGTTGGACC
72889914 ATGGCATCAATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCT
* * * * * *
72889960 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATC----A-ATGTGA-TATGTG-ATCTGTGTAAGACCATAGCTGGGCT
* * *
72890013 ATGGCATCAGTGTGATATGTGAT-TCGTGTAAGACCATGGCTGCGCT
1 ATGGCATCAATGTGATATGTGATCT-GTGTAAGACCATAGCTGGGCT
72890059 ATGGC
1 ATGGC
72890064 TACGGTGTGT
Statistics
Matches: 81, Mismatches: 15, Indels: 16
0.72 0.13 0.14
Matches are distributed among these distances:
46 30 0.37
47 5 0.06
48 5 0.06
49 1 0.01
50 1 0.01
51 6 0.07
52 5 0.06
53 28 0.35
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (46 bp):
ATGGCATCAATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCT
Found at i:72895359 original size:40 final size:40
Alignment explanation
Indices: 72895313--72895389 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
72895303 ACATACTATG
*
72895313 TGGGGATAGAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
* *
72895353 TGGGGATATAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAA
72895390 AGGGTACCGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:72897085 original size:11 final size:11
Alignment explanation
Indices: 72897033--72897078 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
72897023 TTAACGATAG
72897033 TTTCTTCTTTT
1 TTTCTTCTTTT
* *
72897044 TTTCTTC-CTA
1 TTTCTTCTTTT
*
72897054 TTT-TTATTTT
1 TTTCTTCTTTT
72897064 TTTCTTCTTTT
1 TTTCTTCTTTT
72897075 TTTC
1 TTTC
72897079 ATTTTTTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
9 2 0.07
10 8 0.30
11 17 0.63
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTCTTCTTTT
Found at i:72897085 original size:28 final size:30
Alignment explanation
Indices: 72897033--72897093 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
72897023 TTAACGATAG
* *
72897033 TTTCTTCTTTTTTTCTTCCTATTTTTATTTT
1 TTTCTTCTTTTTTTCAT-CTATTTTCATTTT
72897064 TTTCTTCTTTTTTTCAT-T-TTTTCATTTT
1 TTTCTTCTTTTTTTCATCTATTTTCATTTT
72897092 TT
1 TT
72897094 GTTATTAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 11 0.39
29 1 0.04
31 16 0.57
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.79
Consensus pattern (30 bp):
TTTCTTCTTTTTTTCATCTATTTTCATTTT
Found at i:72897086 original size:19 final size:20
Alignment explanation
Indices: 72897040--72897085 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
72897030 TAGTTTCTTC
72897040 TTTTTTTCTTCCTATTTTTA
1 TTTTTTTCTTCCTATTTTTA
*
72897060 TTTTTTTCTT-CTTTTTTTCA
1 TTTTTTTCTTCCTATTTTT-A
72897080 TTTTTT
1 TTTTTT
72897086 CATTTTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTTTCTTCCTATTTTTA
Found at i:72900038 original size:20 final size:20
Alignment explanation
Indices: 72899993--72900031 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
72899983 TTTCAATTAT
72899993 TTTAAAGTTTCATTTAAGTC
1 TTTAAAGTTTCATTTAAGTC
72900013 TTTAAAGTTTCATTTAAGT
1 TTTAAAGTTTCATTTAAGT
72900032 TATTAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTAAAGTTTCATTTAAGTC
Found at i:72901786 original size:8 final size:8
Alignment explanation
Indices: 72901773--72901801 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
72901763 TTATGTTTAG
72901773 TATATTAT
1 TATATTAT
72901781 TATATTAT
1 TATATTAT
72901789 TATATTAT
1 TATATTAT
72901797 TATAT
1 TATAT
72901802 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:72901834 original size:5 final size:5
Alignment explanation
Indices: 72901824--72901864 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
72901814 TTATGTTTTA
72901824 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
72901865 AAACTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:72903578 original size:21 final size:21
Alignment explanation
Indices: 72903543--72903613 Score: 124
Period size: 21 Copynumber: 3.3 Consensus size: 21
72903533 AGGCACTTTA
72903543 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
72903566 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
72903587 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
72903608 TGTGTC
1 TGTGTC
72903614 ATTTTAGGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 39 0.81
23 9 0.19
ACGTcount: A:0.13, C:0.27, G:0.28, T:0.32
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:72903622 original size:21 final size:21
Alignment explanation
Indices: 72903554--72903624 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
72903544 GTGTCGTATT
*
72903554 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCATA
*
72903575 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCATA
*
72903596 TCAGGCACCTCGTGTGTCATT
1 TCAGGCACCTCGTGTGTCATA
*
72903617 TTAGGCAC
1 TCAGGCAC
72903625 TTTATGTGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.30
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCATA
Found at i:72903623 original size:42 final size:42
Alignment explanation
Indices: 72903530--72903638 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
72903520 CGGCTTTTCG
* * *
72903530 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCAT
*
72903574 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCAT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCAT
* * * *
72903616 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
72903639 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 37 0.66
44 19 0.34
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCAT
Found at i:72918144 original size:48 final size:48
Alignment explanation
Indices: 72918073--72918360 Score: 508
Period size: 48 Copynumber: 6.0 Consensus size: 48
72918063 CAAGATAAAT
* *
72918073 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
72918121 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
72918169 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
72918217 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
72918265 ATATGTATATGTGGTAAAG-C-AATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
72918311 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
72918359 AT
1 AT
72918361 GTGTGTATAT
Statistics
Matches: 229, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
46 44 0.19
47 2 0.01
48 183 0.80
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:72918551 original size:37 final size:37
Alignment explanation
Indices: 72918501--72918603 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
72918491 GGAAATATAT
72918501 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72918538 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72918575 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
72918604 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72919954 original size:40 final size:40
Alignment explanation
Indices: 72919888--72920213 Score: 593
Period size: 40 Copynumber: 8.2 Consensus size: 40
72919878 GAGTTATATA
72919888 TATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
72919927 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
72919967 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
72920007 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
72920047 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
72920087 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
72920127 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
72920167 TATCCGGGCTAAGTTCCGAAAAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
72920207 TA-CCGGG
1 TATCCGGG
72920214 TAAACCTCGA
Statistics
Matches: 280, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
39 18 0.06
40 262 0.94
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:72920313 original size:29 final size:28
Alignment explanation
Indices: 72920276--72920404 Score: 100
Period size: 29 Copynumber: 4.5 Consensus size: 28
72920266 CTTCAACCGA
* * *
72920276 GCACCATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
72920305 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
72920333 GCACTATATGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
72920362 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
72920390 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
72920405 AATCAGTCAG
Statistics
Matches: 79, Mismatches: 17, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
28 36 0.46
29 43 0.54
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:72920334 original size:57 final size:57
Alignment explanation
Indices: 72920244--72920432 Score: 229
Period size: 57 Copynumber: 3.3 Consensus size: 57
72920234 GCTGGAGTTA
* * * * *
72920244 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACCATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* ** *
72920301 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATATGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * *
72920358 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
72920415 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
72920433 AGTGTGTTTC
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
56 14 0.12
57 98 0.87
58 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:72920344 original size:28 final size:27
Alignment explanation
Indices: 72920248--72920404 Score: 125
Period size: 28 Copynumber: 5.6 Consensus size: 27
72920238 GAGTTATGAG
* * *
72920248 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * * *
72920276 GCACCATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
72920304 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
* ** *
72920333 GCACTATATGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
72920361 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
*
72920390 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
72920405 AATCAGTCAG
Statistics
Matches: 100, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
28 55 0.55
29 45 0.45
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:72945026 original size:40 final size:40
Alignment explanation
Indices: 72944947--72945026 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
72944937 TCCATTTTTA
* *
72944947 CTTATTTATTTCATTCTTATTAGTATTATTTCTTATTATT
1 CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
* *
72944987 CTTATTTATTT-ATTTATTATT-TTACTATTTCATTCTTATT
1 CTTATTTATTTCA-TTATTATTAGTACTATTTC-TTATTATT
72945027 ATTTTATTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
39 9 0.26
40 25 0.74
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (40 bp):
CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
Found at i:72945034 original size:19 final size:20
Alignment explanation
Indices: 72944951--72945034 Score: 61
Period size: 19 Copynumber: 4.3 Consensus size: 20
72944941 TTTTTACTTA
72944951 TTTATTTCATTCTTATTAGT
1 TTTATTTCATTCTTATTAGT
* * **
72944971 ATTATTTC-TTATTATTCTT
1 TTTATTTCATTCTTATTAGT
*
72944990 ATTTATTT-A-T-TTATTATT
1 -TTTATTTCATTCTTATTAGT
72945008 TTACTATTTCATTCTTATTA-T
1 TT--TATTTCATTCTTATTAGT
72945029 TTTATT
1 TTTATT
72945035 CTGTTTTAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.04
18 7 0.14
19 18 0.35
20 14 0.27
21 4 0.08
22 6 0.12
ACGTcount: A:0.23, C:0.08, G:0.01, T:0.68
Consensus pattern (20 bp):
TTTATTTCATTCTTATTAGT
Found at i:72953268 original size:45 final size:47
Alignment explanation
Indices: 72953217--72953325 Score: 125
Period size: 49 Copynumber: 2.3 Consensus size: 47
72953207 CATATAGAAC
* * *
72953217 TACACTTCTTTTATTT-TATT-TT-AGAATAAGGTTTTTCAACCTTAT
1 TACACTTCTTCTATTTATATTATTAAG-ATAAGGTGTTTCAACCTTAA
*
72953262 TACACTTCATCTATTTGATATTGATTAAGATAAGGTGTTTCAACCTTAA
1 TACACTTCTTCTATTT-ATATT-ATTAAGATAAGGTGTTTCAACCTTAA
*
72953311 TACACTCCTTCTATT
1 TACACTTCTTCTATT
72953326 AGAATATGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
45 14 0.26
47 4 0.08
49 33 0.62
50 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.08, T:0.47
Consensus pattern (47 bp):
TACACTTCTTCTATTTATATTATTAAGATAAGGTGTTTCAACCTTAA
Found at i:72954717 original size:21 final size:20
Alignment explanation
Indices: 72954684--72954726 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
72954674 TAAAATATCC
*
72954684 TTTTTTAACATTTTAACTAT
1 TTTTTTAACATTTCAACTAT
* *
72954704 TTTTTTATATATTTCAATTAT
1 TTTTTTA-ACATTTCAACTAT
72954725 TT
1 TT
72954727 ATAATTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTTAACATTTCAACTAT
Found at i:72969595 original size:23 final size:22
Alignment explanation
Indices: 72969564--72969606 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
72969554 AAATATTTAC
* *
72969564 ATATTAATAAAGTAACTCAAAAT
1 ATATAAATAAA-TAAATCAAAAT
72969587 ATATAAATAAATAAATCAAA
1 ATATAAATAAATAAATCAAA
72969607 TCCAAAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (22 bp):
ATATAAATAAATAAATCAAAAT
Found at i:72972769 original size:95 final size:95
Alignment explanation
Indices: 72972658--72973010 Score: 456
Period size: 95 Copynumber: 3.7 Consensus size: 95
72972648 ACTCTACTGT
* * * * * **
72972658 AACTTTAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCCA-ATAGATAAGATT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTT-CAGGGAGATAAGATT
* * *
72972722 CGTAACTCGTAGCTTTAATATATTCCACTAC
65 TGTAACTTGTAGCTTCAATATATTCCACTAC
* *
72972753 AACTTCAGGGAAATAAGATTCGTATCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* *
72972818 GTAACTTGTAGCTTCAATCTTTTCCACTAC
66 GTAACTTGTAGCTTCAATATATTCCACTAC
* * * *
72972848 AACATCAGGGAGATAAGATTCGCATCTTCTATCTCCTCCACTGCAACTTCAGGGAGATAAGATTT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* * *
72972913 GTAACTTGTAGCTTCAATATGTTCTACTGC
66 GTAACTTGTAGCTTCAATATATTCCACTAC
* * * * *
72972943 AACTTCAGGAAAATAAGATTCGCATCTTCAATCTACTCCACTTCAACTTTAGGGAGATGAGATTT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
72973008 GTA
66 GTA
72973011 TCTTCAATCT
Statistics
Matches: 227, Mismatches: 30, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
94 2 0.01
95 225 0.99
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (95 bp):
AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
GTAACTTGTAGCTTCAATATATTCCACTAC
Found at i:72972770 original size:51 final size:51
Alignment explanation
Indices: 72972683--72972964 Score: 225
Period size: 51 Copynumber: 5.8 Consensus size: 51
72972673 AGATTAGTAA
* * **
72972683 CTTCAATCTGCTCCACTGCAACTTCCA-ATAGATAAGATTCGTAACTCGTAG
1 CTTCAATATGTTCCACTGCAACTT-CAGGGAGATAAGATTCGTAACTCGTAG
* * * *
72972734 CTTTAATATATTCCACTACAACTTCAGGGAAATAAGATTCGT-A----T--
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * *
72972778 CTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAG
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * * * *
72972829 CTTCAATCTTTTCCACTACAACATCAGGGAGATAAGATTCG-----C--AT
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * ** * *
72972873 CTTCTATCTCCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAG
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * *
72972924 CTTCAATATGTTCTACTGCAACTTCAGGAAAATAAGATTCG
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCG
72972965 CATCTTCAAT
Statistics
Matches: 178, Mismatches: 38, Indels: 30
0.72 0.15 0.12
Matches are distributed among these distances:
44 72 0.40
45 1 0.01
46 1 0.01
49 1 0.01
50 3 0.02
51 100 0.56
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (51 bp):
CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
Found at i:72972793 original size:44 final size:44
Alignment explanation
Indices: 72972745--72973046 Score: 228
Period size: 44 Copynumber: 6.5 Consensus size: 44
72972735 TTTAATATAT
* * *
72972745 TCCACTACAACTTCAGGGAAATAAGATTCGTATCTTCAATATGC
1 TCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTGC
* **
72972789 TCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTT
1 TCCACTGCAACTTCAGGGAGATAAGA--T-T--C--GTATCTTCAATCTGC
* * * * *
72972840 TCCACTACAACATCAGGGAGATAAGATTCGCATCTTCTATCTCC
1 TCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTGC
* * *
72972884 TCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTCAATATGT
1 TCCACTGCAACTTCAGGGAGATAAGA--T-T--C--GTATCTTCAATCTGC
* * * * *
72972935 TCTACTGCAACTTCAGGAAAATAAGATTCGCATCTTCAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTGC
* * * * **
72972979 TCCACTTCAACTTTAGGGAGATGAGATTTGTATCTTCAATCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTGC
*
72973023 TACC-CTGCAACTTCAGAGAGATAA
1 T-CCACTGCAACTTCAGGGAGATAA
72973047 AATTTGTGGC
Statistics
Matches: 201, Mismatches: 42, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
44 120 0.60
45 2 0.01
46 4 0.02
47 2 0.01
48 2 0.01
49 4 0.02
51 67 0.33
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTCAATCTGC
Found at i:72977917 original size:48 final size:50
Alignment explanation
Indices: 72977846--72977985 Score: 198
Period size: 48 Copynumber: 2.9 Consensus size: 50
72977836 TAGAGTTATA
*
72977846 TACGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATC-A-ATC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* *
72977894 TACGATCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* * *
72977944 TA--ATCCCTTGTAAGACCATATCTGGGATATGGCATTGGCATC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
72977986 CTACTACGTT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
48 78 0.94
49 1 0.01
50 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (50 bp):
TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
Found at i:72996334 original size:11 final size:10
Alignment explanation
Indices: 72996319--72996348 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
72996309 AACTTGTATA
72996319 ATTTTTAATT
1 ATTTTTAATT
72996329 ATTTTTAATT
1 ATTTTTAATT
72996339 ATTGTTTAAT
1 ATT-TTTAAT
72996349 AGACGATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.68
11 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (10 bp):
ATTTTTAATT
Found at i:72998087 original size:47 final size:48
Alignment explanation
Indices: 72997958--72998096 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
72997948 TACCATGGTT
* * * *
72997958 ATACGTGTAACGTGGTACTAAGTGGATATACCGCGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
72998006 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
72998054 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
72998097 GTAACGTGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 34 0.42
48 47 0.58
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:72998111 original size:38 final size:38
Alignment explanation
Indices: 72998060--72998136 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
72998050 ATTGATTCAT
72998060 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
72998098 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
72998136 T
1 T
72998137 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:73001008 original size:46 final size:46
Alignment explanation
Indices: 73000958--73001133 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
73000948 TGTTTGGGCA
*
73000958 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * * *
73001004 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--A--CG
* *
73001051 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * *
73001097 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73001134 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
Found at i:73001113 original size:93 final size:93
Alignment explanation
Indices: 73000954--73001126 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
73000944 AGGATGTTTG
* * *
73000954 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACGCCCGAACTCATTGAG
73001019 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
73001047 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACGCCCGAACTCATTGAG
73001112 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
73001127 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73007195 original size:26 final size:28
Alignment explanation
Indices: 73007141--73007201 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
73007131 TATTATCAAG
* *
73007141 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
73007169 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
73007195 AATTATA
1 AATTATA
73007202 CAAATTCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:73007654 original size:16 final size:16
Alignment explanation
Indices: 73007633--73007700 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
73007623 GATTTGCTAT
73007633 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
73007649 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
73007665 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
73007681 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
73007697 TACA
1 TACA
73007701 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:73011119 original size:42 final size:42
Alignment explanation
Indices: 73011060--73011143 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
73011050 CCACAAGTAG
73011060 ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
1 ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
*
73011102 ATAATTCAGCGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
1 ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
73011144 TAACACTACT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.51, C:0.12, G:0.20, T:0.17
Consensus pattern (42 bp):
ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
Found at i:73018422 original size:19 final size:19
Alignment explanation
Indices: 73018400--73018445 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
73018390 ATTTTTTTAT
73018400 ATTTGTTTTATGAAAAATA
1 ATTTGTTTTATGAAAAATA
* *
73018419 ATTTGGTTAATGAAAAATA
1 ATTTGTTTTATGAAAAATA
73018438 ATTT-TTTT
1 ATTTGTTTT
73018446 CCTTATAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (19 bp):
ATTTGTTTTATGAAAAATA
Found at i:73018666 original size:13 final size:13
Alignment explanation
Indices: 73018636--73018673 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
73018626 TTTTAATTTT
*
73018636 ATTTTAATAA-AA
1 ATTTAAATAATAA
73018648 AGTTTAAATAATAA
1 A-TTTAAATAATAA
73018662 ATTTAAATAATA
1 ATTTAAATAATA
73018674 TTCTTCGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 1 0.04
13 19 0.83
14 3 0.13
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
ATTTAAATAATAA
Found at i:73018946 original size:9 final size:10
Alignment explanation
Indices: 73018928--73018958 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
73018918 AATTTTTATT
73018928 TTTAAAAATA
1 TTTAAAAATA
73018938 TTT-AAAATA
1 TTTAAAAATA
73018947 TTTAAAAATA
1 TTTAAAAATA
73018957 TT
1 TT
73018959 AATATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:73019161 original size:15 final size:15
Alignment explanation
Indices: 73019141--73019197 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
73019131 ATTCAATATT
73019141 AATATTTTAATAATA
1 AATATTTTAATAATA
*
73019156 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
73019175 AATATATTAATAATA
1 AATATTTTAATAATA
*
73019190 AATGTTTT
1 AATATTTT
73019198 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:73028022 original size:21 final size:21
Alignment explanation
Indices: 73027996--73028039 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
73027986 TATCTGCCAA
73027996 TATAAATTCTATACCCATACT
1 TATAAATTCTATACCCATACT
*
73028017 TATAAATTCTATACCCATGCT
1 TATAAATTCTATACCCATACT
73028038 TA
1 TA
73028040 ATGGGACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (21 bp):
TATAAATTCTATACCCATACT
Found at i:73049782 original size:18 final size:18
Alignment explanation
Indices: 73049746--73049784 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
73049736 CCCGATAAAC
* *
73049746 TTTATATCCTTCTGAGAT
1 TTTAAATCCTTCAGAGAT
*
73049764 TTTAAATCCTTCAGGGAT
1 TTTAAATCCTTCAGAGAT
73049782 TTT
1 TTT
73049785 CATATAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (18 bp):
TTTAAATCCTTCAGAGAT
Found at i:73052824 original size:3 final size:3
Alignment explanation
Indices: 73052818--73052973 Score: 67
Period size: 3 Copynumber: 52.0 Consensus size: 3
73052808 TTTTTTTACA
* *
73052818 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * * *
73052862 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
73052907 CA- TAT TAAT TAT T-T TCT AACG TAT TAT TAT TACT AAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
73052953 T-T CTAGT T-T TAT TAT TAT TAT
1 TAT -TA-T TAT TAT TAT TAT TAT
73052974 GAATATTAGT
Statistics
Matches: 113, Mismatches: 24, Indels: 32
0.67 0.14 0.19
Matches are distributed among these distances:
2 12 0.11
3 89 0.79
4 11 0.10
5 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:73052846 original size:23 final size:23
Alignment explanation
Indices: 73052820--73052865 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
73052810 TTTTTACATA
73052820 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
73052843 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
73052866 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:73052993 original size:14 final size:13
Alignment explanation
Indices: 73052965--73053020 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
73052955 CTAGTTTTAT
*
73052965 TATTAT-TATGAA
1 TATTATATATGTA
*
73052977 TATTAGTGTATGTA
1 TATTA-TATATGTA
73052991 TATTATATATGTA
1 TATTATATATGTA
* *
73053004 TGTATATATATTTA
1 TAT-TATATATGTA
73053018 TAT
1 TAT
73053021 ATAGTACTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 5 0.14
13 10 0.28
14 21 0.58
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.54
Consensus pattern (13 bp):
TATTATATATGTA
Found at i:73053005 original size:17 final size:16
Alignment explanation
Indices: 73052983--73053014 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
73052973 TGAATATTAG
73052983 TGTATGTATATTATATA
1 TGTATGTATA-TATATA
73053000 TGTATGTATATATAT
1 TGTATGTATATATAT
73053015 TTATATATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (16 bp):
TGTATGTATATATATA
Found at i:73053295 original size:45 final size:44
Alignment explanation
Indices: 73053221--73053310 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
73053211 AATATTATAT
* *
73053221 TTTTTATATGTTATTATATATATTTTAATATTATTAGTTACATA
1 TTTTTATATATTATTATATATATTTTAATACTATTAGTTACATA
* * *
73053265 TTTTTATACTATTA-TATGTATATTTCTAATACTATTATTTATATA
1 TTTTTATA-TATTATTATATATATTT-TAATACTATTAGTTACATA
73053310 T
1 T
73053311 ATATATGTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
44 18 0.46
45 21 0.54
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.59
Consensus pattern (44 bp):
TTTTTATATATTATTATATATATTTTAATACTATTAGTTACATA
Found at i:73053309 original size:23 final size:22
Alignment explanation
Indices: 73053215--73053310 Score: 88
Period size: 22 Copynumber: 4.4 Consensus size: 22
73053205 GTTTTCAATA
* *
73053215 TTATAT-TTTTTATA-TGTTAT
1 TTATATATTTTAATACTATTAT
* *
73053235 TATATATATTTTAATATTATTAG
1 T-TATATATTTTAATACTATTAT
* *
73053258 TTACATATTTTTATACTATTAT
1 TTATATATTTTAATACTATTAT
* *
73053280 ATGTATATTTCTAATACTATTAT
1 TTATATATTT-TAATACTATTAT
73053303 TTATATAT
1 TTATATAT
73053311 ATATATGTGT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
20 1 0.02
21 5 0.08
22 31 0.53
23 22 0.37
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.59
Consensus pattern (22 bp):
TTATATATTTTAATACTATTAT
Found at i:73053537 original size:27 final size:28
Alignment explanation
Indices: 73053487--73053546 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
73053477 CCATCTTATG
* *
73053487 TATATATTTTTAAATACTATATTGTATA
1 TATATATTCTTAAATACCATATTGTATA
*
73053515 TATATATTCTT-AATACCATATTGTGTA
1 TATATATTCTTAAATACCATATTGTATA
73053542 TATAT
1 TATAT
73053547 CATTATTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.52
Consensus pattern (28 bp):
TATATATTCTTAAATACCATATTGTATA
Found at i:73055008 original size:22 final size:22
Alignment explanation
Indices: 73054980--73055033 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
73054970 CCACCAACCA
73054980 CTACACTCCACCCGTACCAGCC
1 CTACACTCCACCCGTACCAGCC
73055002 CTACACTCCACCCGTACCAGCC
1 CTACACTCCACCCGTACCAGCC
73055024 CTACACTCCA
1 CTACACTCCA
73055034 TGTGGGGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.54, G:0.07, T:0.15
Consensus pattern (22 bp):
CTACACTCCACCCGTACCAGCC
Found at i:73056796 original size:26 final size:26
Alignment explanation
Indices: 73056765--73056872 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
73056755 TGAAATGCCC
*
73056765 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
73056791 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73056817 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
73056843 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73056869 ATCA
1 ATCA
73056873 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73075040 original size:21 final size:21
Alignment explanation
Indices: 73075015--73075083 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
73075005 TATAATGATT
73075015 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
73075036 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
73075056 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
73075076 ATTATTAT
1 ATTATTAT
73075084 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:73075096 original size:15 final size:14
Alignment explanation
Indices: 73075070--73075100 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
73075060 TATGGTTTTA
73075070 TATTAGATTATTAT
1 TATTAGATTATTAT
73075084 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
73075099 TA
1 TA
73075101 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:73075439 original size:14 final size:14
Alignment explanation
Indices: 73075415--73075447 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
73075405 AAGAATTAAG
73075415 GAAACAAAGAAACA
1 GAAACAAAGAAACA
73075429 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
73075443 GAAAC
1 GAAAC
73075448 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:73078364 original size:22 final size:23
Alignment explanation
Indices: 73078328--73078386 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
73078318 TTTGAATCCA
* *
73078328 TCTATTTTCACTTTAGTTGTT-TT
1 TCTATTTCCATTTTA-TTGTTATT
* *
73078351 TCTTTTTCC-TTTTATTTTTATT
1 TCTATTTCCATTTTATTGTTATT
73078373 TCTATTTCCATTTT
1 TCTATTTCCATTTT
73078387 TTTATGTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
21 4 0.14
22 14 0.48
23 11 0.38
ACGTcount: A:0.12, C:0.15, G:0.03, T:0.69
Consensus pattern (23 bp):
TCTATTTCCATTTTATTGTTATT
Found at i:73079564 original size:14 final size:16
Alignment explanation
Indices: 73079540--73079571 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
73079530 TGTTGAATTA
73079540 TTTCTTATTA-TGTAC
1 TTTCTTATTATTGTAC
73079555 TTTC-TATTATTGTAC
1 TTTCTTATTATTGTAC
73079570 TT
1 TT
73079572 GTTCTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTCTTATTATTGTAC
Found at i:73084683 original size:57 final size:58
Alignment explanation
Indices: 73084622--73084731 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
73084612 ATCTTGTTTC
* *
73084622 TAACATATGCTCATA-AGAGCTTA-ATCAGGATTACCCGTCCGGGCTAAATCCTATCTA
1 TAACATATGCTCA-AGAGAGCTTATATCAGGATTACCAGTCCAGGCTAAATCCTATCTA
*
73084679 TAACATATGCTCAAGAGGGCTTATATCAGGATTACCAGTCCAGGCTAAATCCT
1 TAACATATGCTCAAGAGAGCTTATATCAGGATTACCAGTCCAGGCTAAATCCT
73084732 TTATGTAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
56 1 0.02
57 20 0.42
58 27 0.56
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (58 bp):
TAACATATGCTCAAGAGAGCTTATATCAGGATTACCAGTCCAGGCTAAATCCTATCTA
Found at i:73086606 original size:52 final size:51
Alignment explanation
Indices: 73086528--73086789 Score: 188
Period size: 52 Copynumber: 5.2 Consensus size: 51
73086518 AAGGAATAGA
* * *
73086528 TGTGATATGTGTGCCTGTATAAGACCATAGTTGGGCTATGGCATTAGTGCAT
1 TGTGATATGTG-CCCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
* **
73086580 TGTGATATGTGCACCCGTATAAGACCATAGCTAGGCTATGGCATCGGTGCAT
1 TGTGATATGTGC-CCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
** * * *
73086632 TGTGATATGTATTCCCATATAAGACCATGGCTGGGCTATAGCATCGGTA-TG-A-
1 TGTGATATGT-GCCCCGTATAAGACCATAGCTGGGCTATGGCAT---TAGTGCAT
* * *
73086684 TGTGATAATGTGCCTCCGTATAAGACCATATCT-GGATATGGCATCAGT--A-
1 TGTGAT-ATGTGCC-CCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
** * * * *
73086733 --TGATATGTGATCCGTGTAAGACCATGGCAGGGCTATGGCTTTAGTG---
1 TGTGATATGTGCCCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
73086779 TGTGATATGTG
1 TGTGATATGTG
73086790 ACTATGTGCA
Statistics
Matches: 167, Mismatches: 31, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
45 14 0.08
46 17 0.10
47 4 0.02
48 9 0.05
49 2 0.01
50 1 0.01
52 98 0.59
53 20 0.12
54 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGATATGTGCCCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
Found at i:73090507 original size:40 final size:40
Alignment explanation
Indices: 73090452--73090533 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
73090442 TTCTATTGAG
* *
73090452 AAGAATAACTTATTAGATTTAGGCAACCAATTGACGATGT
1 AAGAATAACTTATTAGATTTAGACAACCAATTGACAATGT
*
73090492 AAGAATAACTTATTAGATTTAGACGACCAATTGACAATGT
1 AAGAATAACTTATTAGATTTAGACAACCAATTGACAATGT
73090532 AA
1 AA
73090534 CACCTCTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (40 bp):
AAGAATAACTTATTAGATTTAGACAACCAATTGACAATGT
Found at i:73101582 original size:94 final size:93
Alignment explanation
Indices: 73101417--73101642 Score: 278
Period size: 94 Copynumber: 2.4 Consensus size: 93
73101407 AGTTCTCCAA
* * * *
73101417 GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTCGGCTATGAAAACATGTGGAGTCTGGC
1 GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTCGACTATGAAAACATGTAGAATCTGGA
73101482 GGGATAGTAAACACGA-GGTAGTTAACCAG
66 GGGATAGTAAACA-GAGGGTAGTT-ACCAG
* **
73101511 GACATTAAACATGGGGTTACTTGTGTAACG-CCTTA-TCTCGACTATGGTAACATGTAGAATCTG
1 GACATTAAACATGGGGTTACATGTGTAA-GACCTTAGT-TCGACTATGAAAACATGTAGAATCTG
* * * * *
73101574 TAGTGATAGTAAACATAGGGTAGTTGCCAT
64 GAGGGATAGTAAACAGAGGGTAGTTACCAG
*
73101604 GACATTAAACATGGGGTTACATGTGTAAGACCATAGTTC
1 GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTC
73101643 AGTTATAACA
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
92 1 0.01
93 38 0.34
94 73 0.65
95 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (93 bp):
GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTCGACTATGAAAACATGTAGAATCTGGA
GGGATAGTAAACAGAGGGTAGTTACCAG
Found at i:73109793 original size:365 final size:365
Alignment explanation
Indices: 73109314--73110044 Score: 1444
Period size: 365 Copynumber: 2.0 Consensus size: 365
73109304 TAATAAACTT
73109314 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
1 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
73109379 GACATCTTAAGTTCACTTAAAGAAATCAATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
66 GACATCTTAAGTTCACTTAAAGAAATCAATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
*
73109444 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAATTCCTAGAACTTGTGCACACTG
131 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
73109509 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
196 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
73109574 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
261 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
73109639 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
326 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
73109679 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
1 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
73109744 GACATCTTAAGTTCACTTAAAGAAATCAATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
66 GACATCTTAAGTTCACTTAAAGAAATCAATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
73109809 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
131 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
*
73109874 GTGTATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
196 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
73109939 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
261 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
73110004 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
326 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
73110044 A
1 A
73110045 TAAAGACATT
Statistics
Matches: 364, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
365 364 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (365 bp):
AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
GACATCTTAAGTTCACTTAAAGAAATCAATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
Found at i:73117880 original size:26 final size:25
Alignment explanation
Indices: 73117818--73117890 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 25
73117808 TTTTAATATC
73117818 ATATTTTTATAC-ATTGTTATGTAT
1 ATATTTTTATACTATTGTTATGTAT
73117842 ATA-TTTTA-A-TATTGTTA-GTTAT
1 ATATTTTTATACTATTGTTATG-TAT
*
73117864 ATATCTTTTATACTATTG-TACGTAT
1 ATAT-TTTTATACTATTGTTATGTAT
73117889 AT
1 AT
73117891 TTCTGATACT
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
21 1 0.02
22 14 0.33
23 5 0.12
24 8 0.19
25 8 0.19
26 6 0.14
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.56
Consensus pattern (25 bp):
ATATTTTTATACTATTGTTATGTAT
Found at i:73119290 original size:6 final size:6
Alignment explanation
Indices: 73119279--73119311 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
73119269 CGTGTAGAAG
73119279 AAAATA AAAATAA AAAATA AAAATA AAAATA AA
1 AAAATA AAAAT-A AAAATA AAAATA AAAATA AA
73119312 CATTAAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:73119297 original size:13 final size:12
Alignment explanation
Indices: 73119279--73119311 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
73119269 CGTGTAGAAG
73119279 AAAATAAAAATAA
1 AAAATAAAAAT-A
73119292 AAAATAAAAATA
1 AAAATAAAAATA
73119304 AAAATAAA
1 AAAATAAA
73119312 CATTAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:73121906 original size:21 final size:21
Alignment explanation
Indices: 73121880--73121933 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
73121870 GTGAGGGTCT
*
73121880 ACACGCCGATGTAAAGGCCAC
1 ACACGCCCATGTAAAGGCCAC
* *
73121901 ACACGCCTATGTAAAGGCTAC
1 ACACGCCCATGTAAAGGCCAC
73121922 ACACGCCCATGT
1 ACACGCCCATGT
73121934 GGAGGGGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.33, G:0.20, T:0.15
Consensus pattern (21 bp):
ACACGCCCATGTAAAGGCCAC
Found at i:73123451 original size:31 final size:31
Alignment explanation
Indices: 73123413--73123471 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
73123403 CAAGTTGACA
* *
73123413 TTATATC-AGAGTTGCTTACACAAGCTAAAAT
1 TTATATCAAG-GTTACTCACACAAGCTAAAAT
73123444 TTATATCAAGGTTACTCACACAAGCTAA
1 TTATATCAAGGTTACTCACACAAGCTAA
73123472 CTTATATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (31 bp):
TTATATCAAGGTTACTCACACAAGCTAAAAT
Found at i:73124246 original size:45 final size:45
Alignment explanation
Indices: 73124158--73124245 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
73124148 AATTTAATTT
* *
73124158 AATTGTTTTATTTTTTATTTTGAAGCAAATAAGATTTCATTTTTA
1 AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTTAATTTTTA
73124203 AATTATTTTATTTTTTATTTTGAAGCAAATAAGA-TTAATTTTT
1 AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTTAATTTTT
73124246 TTGAGTTTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 8 0.20
45 33 0.80
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (45 bp):
AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTTAATTTTTA
Found at i:73130400 original size:33 final size:33
Alignment explanation
Indices: 73130358--73130423 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
73130348 TAACTCAAAT
73130358 TCCTTTTAAAGAAATAATGCAGAGGTAAAACTA
1 TCCTTTTAAAGAAATAATGCAGAGGTAAAACTA
*
73130391 TCCTTTTAAAGAAATAATGCAGCGGTAAAACTA
1 TCCTTTTAAAGAAATAATGCAGAGGTAAAACTA
73130424 AGGGATTTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (33 bp):
TCCTTTTAAAGAAATAATGCAGAGGTAAAACTA
Found at i:73131183 original size:14 final size:14
Alignment explanation
Indices: 73131164--73131191 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73131154 TTAGTGTTAG
73131164 TTTAATTGATATGA
1 TTTAATTGATATGA
73131178 TTTAATTGATATGA
1 TTTAATTGATATGA
73131192 ATATTGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
TTTAATTGATATGA
Found at i:73143830 original size:31 final size:32
Alignment explanation
Indices: 73143776--73143847 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 32
73143766 AAAGATGAAA
73143776 TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
1 TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
* * * *
73143808 TTCCAAATT-AGGAAAAATTGTCAAGTTTATG
1 TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
73143839 TACCAAATT
1 TACCAAATT
73143848 GGACCAGCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
31 27 0.77
32 8 0.23
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (32 bp):
TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
Found at i:73151610 original size:46 final size:45
Alignment explanation
Indices: 73151558--73151837 Score: 290
Period size: 46 Copynumber: 6.6 Consensus size: 45
73151548 TTTGAGTACT
*
73151558 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTA
1 TCTGATCAAGTGATAAAGTGATAAGTGGTAG-TTTAGCTACACTTA
**
73151604 TCTGATCAAGAAATAAAGTGATAAGT-G--G--T---TACACTTA
1 TCTGATCAAGTGATAAAGTGATAAGTGGTAGTTTAGCTACACTTA
** *
73151641 TCTGATCAAGAAACAAAGTGATAA---GT-G----GCTACACTTA
1 TCTGATCAAGTGATAAAGTGATAAGTGGTAGTTTAGCTACACTTA
*
73151678 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTA
1 TCTGATCAAGTGATAAAGTGATAAGTGGTAG-TTTAGCTACACTTA
*
73151724 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTA
1 TCTGATCAAGTGATAAAGTGATAAGTGGTAG-TTTAGCTACACTTA
* * **
73151770 TCTGATCAAGTGGTAAAGTGATAAGAGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGATAAAGTGATAAGTGGTAGTTTAGCTACACTTA
*
73151815 TCTGATCAAG-GA-CAAGTGATAAG
1 TCTGATCAAGTGATAAAGTGATAAG
73151838 AGGTCATATG
Statistics
Matches: 208, Mismatches: 14, Indels: 27
0.84 0.06 0.11
Matches are distributed among these distances:
35 1 0.00
36 1 0.00
37 60 0.29
40 3 0.01
41 1 0.00
43 11 0.05
44 1 0.00
45 22 0.11
46 108 0.52
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGATAAAGTGATAAGTGGTAGTTTAGCTACACTTA
Found at i:73151637 original size:37 final size:37
Alignment explanation
Indices: 73151596--73151706 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
73151586 TAGTTTTAGC
73151596 TACACTTATCTGATCAAGAAATAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAATAAAGTGATAAGTGGT
* *
73151633 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGAAATAAAGTGATAAGTGGT
**
73151670 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAATAAAGTGATAAGTGGT
73151707 AGCTTCAGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAAATAAAGTGATAAGTGGT
Found at i:73153614 original size:24 final size:24
Alignment explanation
Indices: 73153568--73153621 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
73153558 ATGTTTTTTC
73153568 ATATA-GTTGTTTAAATTATTTAT
1 ATATATGTTGTTTAAATTATTTAT
* *
73153591 ATATATGTTTTTTAAATCTATTATGT
1 ATATATGTTGTTTAAAT-TATT-TAT
73153617 ATATA
1 ATATA
73153622 ACTTATTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 5 0.19
24 10 0.38
25 4 0.15
26 7 0.27
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (24 bp):
ATATATGTTGTTTAAATTATTTAT
Found at i:73154511 original size:128 final size:127
Alignment explanation
Indices: 73154267--73154603 Score: 440
Period size: 128 Copynumber: 2.6 Consensus size: 127
73154257 TACTCGTTTG
** * *
73154267 AAAATTCCTTAAAACAAAGGCAATGTTTGATGTTTGAAAATTCGGGAAATCGTGCCCTATCGTGC
1 AAAATT-C-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGC
* * *
73154332 TGGGTTTCGATTTCCCGTTTGTTCAAAGTAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTT
63 TGGGTTTCGATTTTCGGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTG-TTTT
*
73154397 T
127 A
* * * * *
73154398 CAAATTCTAAAATAAGGCAATGTTCAACGTTTGGAAATTCGGGGAATCGTGCCCTATCGTACTAG
1 AAAATTCTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGG
* *
73154463 GTTTCGATTTTCGGTTTGTTCAAAATAATTGAATATTCCTTTAGAATTTCTCTCGTGTTTTA
66 GTTTCGATTTTCGGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTA
* * * * *
73154525 AAAATTCTAAAGCAAGGCAATGTCCAATGTTTGGAAATTCGAGGAATTGTGCCCTACCGTGCTGG
1 AAAATTCTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGG
*
73154590 GTTTCAGTTTTTCG
66 GTTTC-GATTTTCG
73154604 TTAGACTAAA
Statistics
Matches: 179, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
127 64 0.36
128 104 0.58
129 5 0.03
130 1 0.01
131 5 0.03
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (127 bp):
AAAATTCTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGG
GTTTCGATTTTCGGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTA
Found at i:73166014 original size:45 final size:44
Alignment explanation
Indices: 73165908--73166212 Score: 208
Period size: 45 Copynumber: 6.8 Consensus size: 44
73165898 TTAAGTCATC
* * ** * **
73165908 ATAGCAAACCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTTGAAG
1 ATAGC-AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
* * *
73165953 -TAGCAAGTCTCATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAG
1 ATAGCAA-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
*
73165997 ATAGCAGATCTTATCTCCCTAAAGTTGCAGTGTAGCAGA-TCGAAG
1 ATAGCA-ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-GAAG
*** ** ** * *
73166042 -CCCCAATCCTTATCTTTCTGAAA-TTGCAGTAAAGTAGGA-T-AAA
1 ATAGCAAT-CTTATCTCCCT-AAAGTTGCAGTGGAGCA-GACTGAAG
* * * *
73166085 ATTACCCAATTCTTATCTCCCTAAAGTTGCAATGGAACAGACTAAAG
1 A-TA-GCAA-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
* * * *
73166132 TTAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAG
1 ATAGCA-ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
73166177 ATAGCAGATCTTATCTCCCTAAAGTTGCAGTGGAGC
1 ATAGCA-ATCTTATCTCCCTAAAGTTGCAGTGGAGC
73166213 CAATCGAAGT
Statistics
Matches: 203, Mismatches: 42, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.03
44 53 0.26
45 115 0.57
46 26 0.13
47 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
ATAGCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
Found at i:73166112 original size:90 final size:88
Alignment explanation
Indices: 73166004--73166305 Score: 301
Period size: 90 Copynumber: 3.4 Consensus size: 88
73165994 AAGATAGCAG
* * * *
73166004 ATCTTATCTCCCTAAAGTTGCAGTGTAGCAGATCGAAGCCCCAATCCTTATCTTTCTGAAATTGC
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGTCACAATCCTTATCTTTCTGAAGTTGC
*
73166069 AGTAAAGTAGGATAAAATTACCCA
66 AGTAAAGCAGGATAAAA-TACCCA
* * * * * **
73166093 ATTCTTATCTCCCTAAAGTTGCAATGGAACAGA-CTAAAGTTAGAAGAT-CTTATCTCCCTGAAG
1 A-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATC-GAAGTCA-CA-ATCCTTATCTTTCTGAAG
** *
73166156 TTGCAGTGGAGCA-GACTAAAGATA-GCA
62 TTGCAGTAAAGCAGGA-TAAA-ATACCCA
73166183 GATCTTATCTCCCTAAAGTTGCAGTGGAGCCA-ATCGAAGTCACAATCCTTATCTTTCTGAAGTT
1 -ATCTTATCTCCCTAAAGTTGCAGTGGAG-CAGATCGAAGTCACAATCCTTATCTTTCTGAAGTT
*
73166247 GCAGTAAAGCAGGATAAAAAATACACGA
64 GCAGTAAAGCAGGAT--AAAATAC-CCA
73166275 A-CTGTATCTCCCTAAAGTTGCAGTGGAGCAG
1 ATCT-TATCTCCCTAAAGTTGCAGTGGAGCAG
73166306 TTGCAGTAAA
Statistics
Matches: 170, Mismatches: 26, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
88 2 0.01
89 28 0.16
90 75 0.44
91 61 0.36
92 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (88 bp):
ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGTCACAATCCTTATCTTTCTGAAGTTGC
AGTAAAGCAGGATAAAATACCCA
Found at i:73166157 original size:135 final size:133
Alignment explanation
Indices: 73165916--73166170 Score: 332
Period size: 135 Copynumber: 1.9 Consensus size: 133
73165906 TCATAGCAAA
** * * *
73165916 CCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTTGAAGTAGCAAGTCTCATCTCCCTGAAGTTGTA
1 CCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTAAAAGTACCAAGTCTCATCTCCCTAAAGTTGCA
* * * * *
73165981 GTGGAGCAGACTGAAGATAGCAGATCTTATCTCCCTAAAGTTGCAGTGTAGCAGATCGAAGCCCC
66 ATGGAACAGACTAAAGATAGAAGATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGCCCC
73166046 AAT
131 AAT
* * * *
73166049 CCTTATCTTTCTGAAA-TTGCAGTAAAGTAGGATAAAATTACCCAATTCTTATCTCCCTAAAGTT
1 CCTTATCTCTCT-AAAGTTGCAGTAAAGTAGG-TAAAAGTA-CCAAGTCTCATCTCCCTAAAGTT
* *
73166113 GCAATGGAACAGACTAAAGTTAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
63 GCAATGGAACAGACTAAAGATAGAAGATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
73166171 CTAAAGATAG
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
133 26 0.25
134 8 0.08
135 69 0.67
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (133 bp):
CCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTAAAAGTACCAAGTCTCATCTCCCTAAAGTTGCA
ATGGAACAGACTAAAGATAGAAGATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGCCCC
AAT
Found at i:73166181 original size:180 final size:181
Alignment explanation
Indices: 73165964--73166301 Score: 531
Period size: 180 Copynumber: 1.9 Consensus size: 181
73165954 AGCAAGTCTC
* *
73165964 ATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCCTAAAGTTGCAGTG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTAAAGTTGCAGTG
* * * *
73166029 TAG-CAGATCGAAGCCCCAATCCTTATCTTTCTGAAATTGCAGTAAAGTAGGAT-AAAATTAC-C
66 GAGCCA-ATCGAAGCCACAATCCTTATCTTTCTGAAATTGCAGTAAAGCAGGATAAAAAATACAC
73166091 CAATTCT-TATCTCCCTAAAGTTGCAATGGAACAGACTAAAGTTAGAAGATCTT
130 CAA--CTGTATCTCCCTAAAGTTGCAATGGAACAGACTAAAGTTAGAAGATCTT
73166144 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTAAAGTTGCAGTG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTAAAGTTGCAGTG
* * *
73166209 GAGCCAATCGAAGTCACAATCCTTATCTTTCTGAAGTTGCAGTAAAGCAGGATAAAAAATACACG
66 GAGCCAATCGAAGCCACAATCCTTATCTTTCTGAAATTGCAGTAAAGCAGGATAAAAAATACACC
*
73166274 AACTGTATCTCCCTAAAGTTGCAGTGGA
131 AACTGTATCTCCCTAAAGTTGCAATGGA
73166302 GCAGTTGCAG
Statistics
Matches: 144, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
180 110 0.76
181 31 0.22
182 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (181 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTAAAGTTGCAGTG
GAGCCAATCGAAGCCACAATCCTTATCTTTCTGAAATTGCAGTAAAGCAGGATAAAAAATACACC
AACTGTATCTCCCTAAAGTTGCAATGGAACAGACTAAAGTTAGAAGATCTT
Found at i:73168144 original size:24 final size:26
Alignment explanation
Indices: 73168108--73168162 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
73168098 ATGTTTTTTC
73168108 ATATAGTTGTTTTAAAT-TATT-TAT
1 ATATAGTTGTTTTAAATCTATTATAT
*
73168132 ATATATGTT-TTTTAAATCTATTATGT
1 ATATA-GTTGTTTTAAATCTATTATAT
73168158 ATATA
1 ATATA
73168163 ACTTATTTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 13 0.48
25 7 0.26
26 7 0.26
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (26 bp):
ATATAGTTGTTTTAAATCTATTATAT
Found at i:73169891 original size:31 final size:31
Alignment explanation
Indices: 73169853--73169917 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
73169843 ATTTTTCGAG
73169853 TTTAATATTTCTATCCAAATTTTAGATCAAC
1 TTTAATATTTCTATCCAAATTTTAGATCAAC
73169884 TTTAATATTTCTATCCAAATTTTAGATCAAC
1 TTTAATATTTCTATCCAAATTTTAGATCAAC
73169915 TTT
1 TTT
73169918 TAAATTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTAATATTTCTATCCAAATTTTAGATCAAC
Found at i:73172706 original size:56 final size:56
Alignment explanation
Indices: 73172610--73172721 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
73172600 AGATTGCCAG
* **
73172610 TTATTTCCTATGATTAACAGCTCCGATCATTGTTTCTGGCTGCTTCCTTTAGTTCT
1 TTATTTCCTATGATTAACAGCTCCAATCATCATTTCTGGCTGCTTCCTTTAGTTCT
* * * *
73172666 TTATTTCCTCTGATTGACAGCTCCAATCATCATTTTTGGCTGCTTCCTTTGGTTCT
1 TTATTTCCTATGATTAACAGCTCCAATCATCATTTCTGGCTGCTTCCTTTAGTTCT
73172722 GTGCGTTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.15, C:0.24, G:0.14, T:0.46
Consensus pattern (56 bp):
TTATTTCCTATGATTAACAGCTCCAATCATCATTTCTGGCTGCTTCCTTTAGTTCT
Found at i:73175833 original size:11 final size:12
Alignment explanation
Indices: 73175784--73175839 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 12
73175774 TTTTCTTAGG
*
73175784 TATA-TATATTT
1 TATATTATATTA
73175795 TATATTATTATTA
1 TATATTA-TATTA
73175808 -ATTGATTATATTA
1 TA-T-ATTATATTA
73175821 TA-ATTATATTA
1 TATATTATATTA
73175832 TATATTAT
1 TATATTAT
73175840 GAAACAAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
11 15 0.39
12 8 0.21
13 10 0.26
14 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (12 bp):
TATATTATATTA
Found at i:73175901 original size:17 final size:18
Alignment explanation
Indices: 73175874--73175907 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73175864 GTATGATAAT
73175874 AAAAATATATATGTGTAA
1 AAAAATATATATGTGTAA
*
73175892 AAAAAT-TATATTTGTA
1 AAAAATATATATGTGTA
73175908 CAATTGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (18 bp):
AAAAATATATATGTGTAA
Found at i:73176061 original size:24 final size:25
Alignment explanation
Indices: 73176034--73176080 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
73176024 AGTGATGATG
73176034 ATATACAAATGTAACA-ATGTATAA
1 ATATACAAATGTAACATATGTATAA
* **
73176058 ATATATATTTGTAACATATGTAT
1 ATATACAAATGTAACATATGTAT
73176081 TTGTGTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (25 bp):
ATATACAAATGTAACATATGTATAA
Found at i:73176119 original size:19 final size:22
Alignment explanation
Indices: 73176097--73176139 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
73176087 ATTAAATAGA
73176097 TATTT-ATT-ATATT-TATTAT
1 TATTTAATTGATATTATATTAT
73176116 TATTTAATTGATATTATATTAT
1 TATTTAATTGATATTATATTAT
73176138 TA
1 TA
73176140 AATTAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 3 0.14
21 5 0.24
22 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTTAATTGATATTATATTAT
Found at i:73183096 original size:6 final size:6
Alignment explanation
Indices: 73183065--73183117 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
73183055 TTTAAGTGAA
* * *
73183065 TATTTT TAATTATT TATTGT TATTTT T-GTTT TGTTTT TATTTT TATTTT
1 TATTTT T-ATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
73183114 TATT
1 TATT
73183118 ATTTTTCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 26 0.67
7 6 0.15
8 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:73183730 original size:21 final size:20
Alignment explanation
Indices: 73183706--73183747 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
73183696 GTCTGGTGGG
*
73183706 CACACGGACGTGTGAGACCCT
1 CACACGGACGTGTCAG-CCCT
*
73183727 CACACGGTCGTGTCAGCCCT
1 CACACGGACGTGTCAGCCCT
73183747 C
1 C
73183748 TACTCAGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.19, C:0.38, G:0.26, T:0.17
Consensus pattern (20 bp):
CACACGGACGTGTCAGCCCT
Found at i:73183834 original size:22 final size:21
Alignment explanation
Indices: 73183800--73183850 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
73183790 TCCCCAAGGC
*
73183800 CATGT-CCCTAGTCCACACGGG
1 CATGTGCCTTAGT-CACACGGG
*
73183821 CATGTGCCTTAGTCACACGGT
1 CATGTGCCTTAGTCACACGGG
*
73183842 CGTGTGCCT
1 CATGTGCCT
73183851 CTCTTCACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.25
Consensus pattern (21 bp):
CATGTGCCTTAGTCACACGGG
Found at i:73183861 original size:22 final size:22
Alignment explanation
Indices: 73183833--73183874 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
73183823 TGTGCCTTAG
73183833 TCACACG-GTCGTGTGCCTCTCT
1 TCACACGAG-CGTGTGCCTCTCT
73183855 TCACACGAGCGTGTGCCTCT
1 TCACACGAGCGTGTGCCTCT
73183875 ACCACACAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (22 bp):
TCACACGAGCGTGTGCCTCTCT
Found at i:73200449 original size:16 final size:16
Alignment explanation
Indices: 73200428--73200458 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73200418 TTTTTCCCTA
73200428 TTATAAATATTTCTAC
1 TTATAAATATTTCTAC
*
73200444 TTATAATTATTTCTA
1 TTATAAATATTTCTA
73200459 GGTCAAATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATAAATATTTCTAC
Found at i:73202662 original size:43 final size:43
Alignment explanation
Indices: 73202614--73202755 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 43
73202604 CAAATCTAAA
*
73202614 AAACGCCGCTAAAGACCTA-GACCTTTAGCGGAGCTCTTTTAAG
1 AAACGCCGCTAAAGACC-AGGACCTTTAGCGGAGCTCTTTTAAC
* * * * *
73202657 AAACGCCGCTAAAGACCAGGACCTTTAGCAGTGTTTTTTTTAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGAGCTCTTTTAAC
* * * * *
73202700 AAACGCCACTAAAGATCATGACCTTTAGCGGCGCT-TTTCTCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGAGCTCTTT-TAAC
*
73202743 AAACGCTGCTAAA
1 AAACGCCGCTAAA
73202756 AATCATGAAC
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 4 0.05
43 78 0.95
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAGGACCTTTAGCGGAGCTCTTTTAAC
Found at i:73205605 original size:26 final size:26
Alignment explanation
Indices: 73205567--73205624 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
73205557 TGATACAAAT
*
73205567 TGATAATATGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73205593 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73205619 TGATAA
1 TGATAA
73205625 GAATTTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:73207136 original size:26 final size:26
Alignment explanation
Indices: 73207107--73207159 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
73207097 TTTACAATTT
73207107 TACCCCTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
73207133 TACCCCTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
73207159 T
1 T
73207160 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:73210584 original size:15 final size:15
Alignment explanation
Indices: 73210558--73210594 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
73210548 GCCCTTAAAC
73210558 CATAAA-CCATAA-T
1 CATAAACCCATAATT
73210571 CACTAAACCCATAATT
1 CA-TAAACCCATAATT
73210587 CATAAACC
1 CATAAACC
73210595 TTAAAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 4 0.19
15 12 0.57
16 3 0.14
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.22
Consensus pattern (15 bp):
CATAAACCCATAATT
Found at i:73210804 original size:22 final size:22
Alignment explanation
Indices: 73210774--73210823 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
73210764 AAAATATAAA
* *
73210774 CTAAA-CCCTAAACTCTTAATC
1 CTAAATCCCTAAACCCTAAATC
* *
73210795 CTTAATCCCTAGACCCTAAATC
1 CTAAATCCCTAAACCCTAAATC
73210817 CTAAATC
1 CTAAATC
73210824 ATAAAATATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.36, C:0.34, G:0.02, T:0.28
Consensus pattern (22 bp):
CTAAATCCCTAAACCCTAAATC
Found at i:73210883 original size:15 final size:15
Alignment explanation
Indices: 73210840--73210893 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
73210830 TATAAACTCT
* *
73210840 TAAT-CCTAGACCCC
1 TAATCCCTAAACCCA
73210854 TAA-CCCTTAAA-CCA
1 TAATCCC-TAAACCCA
73210868 TAATCCCTAAACCCA
1 TAATCCCTAAACCCA
*
73210883 TAATCCATAAA
1 TAATCCCTAAA
73210894 ACTTAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 14 0.42
15 19 0.58
ACGTcount: A:0.41, C:0.35, G:0.02, T:0.22
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:73210890 original size:22 final size:21
Alignment explanation
Indices: 73210851--73210892 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
73210841 AATCCTAGAC
*
73210851 CCCTAACCCTTAAACCATAAT
1 CCCTAACCCATAAACCATAAT
*
73210872 CCCTAAACCCATAATCCATAA
1 CCCT-AACCCATAAACCATAA
73210893 AACTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.21
Consensus pattern (21 bp):
CCCTAACCCATAAACCATAAT
Found at i:73211134 original size:21 final size:22
Alignment explanation
Indices: 73211108--73211153 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
73211098 GTTTAAAATT
*
73211108 TTTTAAGG-TTAGAGTTTAGTG
1 TTTTAAGGATTAGAGATTAGTG
*
73211129 TTTTAAGGATTATAGATTAGTG
1 TTTTAAGGATTAGAGATTAGTG
73211151 TTT
1 TTT
73211154 ATGATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (22 bp):
TTTTAAGGATTAGAGATTAGTG
Found at i:73211252 original size:41 final size:41
Alignment explanation
Indices: 73211195--73211372 Score: 277
Period size: 41 Copynumber: 4.3 Consensus size: 41
73211185 GTTATATGAC
* * *
73211195 TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCT-TCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GGT
* *
73211236 TTTTAGCGGCGTTTTACCAAAAACGACGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
73211277 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
73211318 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
73211359 TTTTAGCGGCGTTT
1 TTTTAGCGGCGTTT
73211373 ATGCTCTGTT
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
41 125 0.99
42 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:73211397 original size:24 final size:24
Alignment explanation
Indices: 73211350--73211395 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
73211340 GCGCCGCTAT
73211350 TGCTCTGGTTTTTAGCGGCGTTTA
1 TGCTCTGGTTTTTAGCGGCGTTTA
73211374 TGCTCT-GTTTTTAGCGGCGTTT
1 TGCTCTGGTTTTTAGCGGCGTTT
73211396 TAACAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.07, C:0.17, G:0.28, T:0.48
Consensus pattern (24 bp):
TGCTCTGGTTTTTAGCGGCGTTTA
Found at i:73211425 original size:64 final size:65
Alignment explanation
Indices: 73211308--73211436 Score: 208
Period size: 64 Copynumber: 2.0 Consensus size: 65
73211298 AGCGCCGCTA
* *
73211308 ATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTT
1 ATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAACGCCGCTATTGCTCTGGTTTTTAGCGGCGTTT
*
73211373 ATGCTCT-GTTTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCT-TTGTTTTTAGCGGCGTT
1 ATGCTCTGGTTTTTAGCGGCGTTTT-ACAAAAAACGCCGCTATTGCTCTGGTTTTTAGCGGCGTT
73211436 T
65 T
73211437 TTGGTAAAAC
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
64 34 0.57
65 26 0.43
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (65 bp):
ATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAACGCCGCTATTGCTCTGGTTTTTAGCGGCGTTT
Found at i:73211468 original size:105 final size:106
Alignment explanation
Indices: 73211267--73211460 Score: 286
Period size: 105 Copynumber: 1.8 Consensus size: 106
73211257 AACGACGCTA
* *
73211267 ATGCTCTGGTTTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTT
1 ATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTT
73211332 TACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTT
66 TACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTT
* *
73211373 ATGCTCT-GTTTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCT-TTGTTTTTAGCGGCGTT
1 ATGCTCTGGTTTTTAGCGGCGTTTT-ACAAAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCG-T
***
73211436 TTTGGTAAAA-CGCCGCTATTGCTCT
64 TTTACCAAAAGCGCCGCTATTGCTCT
73211461 ATGTTTTACA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
105 46 0.58
106 33 0.42
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (106 bp):
ATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTT
TACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTT
Found at i:73213296 original size:37 final size:37
Alignment explanation
Indices: 73213255--73213331 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
73213245 AAATCTTATT
* *
73213255 GACATAATTTAAATATGCTTTACGTTAAATCCACACC
1 GACATAATTTAAATATACTTTACATTAAATCCACACC
*
73213292 GACATAATTTAAATATACTTTACATTAAATCCAGACC
1 GACATAATTTAAATATACTTTACATTAAATCCACACC
73213329 GAC
1 GAC
73213332 TTTAATTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (37 bp):
GACATAATTTAAATATACTTTACATTAAATCCACACC
Found at i:73215837 original size:7 final size:7
Alignment explanation
Indices: 73215825--73215857 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
73215815 AGCTGGATTG
73215825 ATTTAAA
1 ATTTAAA
73215832 ATTTAAA
1 ATTTAAA
73215839 ATTTAAA
1 ATTTAAA
73215846 ATTTAAA
1 ATTTAAA
73215853 ATTTA
1 ATTTA
73215858 TTTTCTAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATTTAAA
Found at i:73218560 original size:26 final size:26
Alignment explanation
Indices: 73218524--73218581 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
73218514 CATGAAATTC
73218524 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
73218550 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
73218576 TTATCA
1 TTATCA
73218582 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73223876 original size:30 final size:31
Alignment explanation
Indices: 73223795--73223876 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 31
73223785 GATGCGTATG
*
73223795 ATTAAATCAGAATTAAAGTTTCAAGTATACA
1 ATTAAATCACAATTAAAGTTTCAAGTATACA
* * * * * *
73223826 TTTAAACCACAATTAGAGTTTCACGTGTAGA
1 ATTAAATCACAATTAAAGTTTCAAGTATACA
*
73223857 ATTACATCA-AATTAAAGTTT
1 ATTAAATCACAATTAAAGTTT
73223877 ATGTACATAA
Statistics
Matches: 40, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
30 10 0.25
31 30 0.75
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (31 bp):
ATTAAATCACAATTAAAGTTTCAAGTATACA
Found at i:73225126 original size:26 final size:26
Alignment explanation
Indices: 73225049--73225128 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
73225039 ATTAAATTTG
*
73225049 TTTTAGTTTTTTGTTATATATATATA
1 TTTTAGTTTTTTGTTATATATATATT
73225075 TTTTAGTTTTTTGTTATATATATATT
1 TTTTAGTTTTTTGTTATATATATATT
73225101 TTTTAGTTTTTTGTTATATATATATT
1 TTTTAGTTTTTTGTTATATATATATT
73225127 TT
1 TT
73225129 CATTTAAATT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (26 bp):
TTTTAGTTTTTTGTTATATATATATT
Done.