Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 213 of 311
Found at i:73228017 original size:26 final size:26
Alignment explanation
Indices: 73227938--73228026 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
73227928 ATATAAGTAA
* *
73227938 TATATAACTAGTAATATCAAAATATATA
1 TATATAA-T-GTAATATAAAAATATATG
* *
73227966 CATGATAATAT-ATATAAAAATATATG
1 TAT-ATAATGTAATATAAAAATATATG
*
73227992 TATATAATGTAATATGAAAATATATG
1 TATATAATGTAATATAAAAATATATG
73228018 TAGTATAAT
1 TA-TATAAT
73228027 ATTAAAATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 6 0.12
26 31 0.61
27 7 0.14
28 3 0.06
29 4 0.08
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (26 bp):
TATATAATGTAATATAAAAATATATG
Found at i:73228077 original size:32 final size:32
Alignment explanation
Indices: 73228033--73228097 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
73228023 TAATATTAAA
73228033 ATATAATAATACAACATTAAAAATATATGATAT
1 ATATAATAATACAACATTAAAAATATAT-ATAT
* *
73228066 ATATAA-AATACAATATTAAAAGTATATATAT
1 ATATAATAATACAACATTAAAAATATATATAT
73228097 A
1 A
73228098 ACATATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (32 bp):
ATATAATAATACAACATTAAAAATATATATAT
Found at i:73228081 original size:53 final size:53
Alignment explanation
Indices: 73228024--73228124 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 53
73228014 TATGTAGTAT
73228024 AATATTAAAA-TATAATAATACAACAT-TAAAAATATATGATAT-ATATAAAATAC
1 AATATTAAAAGTAT-AT-ATACAACATATAAAAATATAT-ATATAATATAAAATAC
*
73228077 AATATTAAAAGTATATATATAACATATAAAAATATATATATAATATAA
1 AATATTAAAAGTATATATACAACATATAAAAATATATATATAATATAA
73228125 TACCCAAGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
52 12 0.27
53 29 0.66
54 3 0.07
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (53 bp):
AATATTAAAAGTATATATACAACATATAAAAATATATATATAATATAAAATAC
Found at i:73229949 original size:15 final size:15
Alignment explanation
Indices: 73229925--73229957 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
73229915 TTGATCTTTG
*
73229925 AAAAATATAAATTGA
1 AAAAACATAAATTGA
73229940 AAAAACATAAATTGA
1 AAAAACATAAATTGA
73229955 AAA
1 AAA
73229958 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAAACATAAATTGA
Found at i:73230097 original size:95 final size:93
Alignment explanation
Indices: 73229888--73230285 Score: 345
Period size: 89 Copynumber: 4.4 Consensus size: 93
73229878 GTGAACCCAC
* *
73229888 GGCTCAACTCACCTCTCGCAATATGAGTT-G-----ATCTTTGAAAAATATAAATTGAAAAAACA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTATTTTTGAAAAACATAAATTG-AAAAACA
* *
73229947 TAAATTGAAAATACCTCAGCATGTGAGCC-GA
65 GAAATTGAAAATACCTCAGC--GTG-CCCTGA
* **
73229978 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTTTTTTTGAAAAGTGA-AAATTGAAAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGG--TTTTTATTTTTGAAAA-ACATAAATTGAAAAA
73230042 CAGAAATTGAAAATACCTCAGCGTGCCCTGA
63 CAGAAATTGAAAATACCTCAGCGTGCCCTGA
*
73230073 GGCTCAACTCACCTCTCGCAATATGAGCT-G-----ATTTTTGAAAAACATAAATTGGAGAAAAC
1 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTATTTTTGAAAAACATAAATT-GA-AAAAC
* * *
73230132 AGAAATTGAAATTACCTCAGCATGTCCTGA
64 AGAAATTGAAAATACCTCAGCGTGCCCTGA
* * * *
73230162 GGCTCAACTCACCTCTCGTAGTATGAGTT-G-----ATTTTTGAAAAACAGAAATT-AAAAATAG
1 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTATTTTTGAAAAACATAAATTGAAAAACAG
* *
73230220 AAATTGAAAAGACCTCAGCATGTGAGCC-GA
66 AAATTGAAAATACCTCAGC--GTG-CCCTGA
* * * *
73230250 GGCTTAACTCATCTCTCGCGATATGAGTTGATTTTT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTT
73230286 GACAAACATA
Statistics
Matches: 258, Mismatches: 28, Indels: 40
0.79 0.09 0.12
Matches are distributed among these distances:
86 24 0.09
87 16 0.06
88 30 0.12
89 80 0.31
90 29 0.11
91 1 0.00
94 3 0.01
95 33 0.13
97 26 0.10
98 15 0.06
99 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (93 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTATTTTTGAAAAACATAAATTGAAAAACAG
AAATTGAAAATACCTCAGCGTGCCCTGA
Found at i:73230166 original size:89 final size:87
Alignment explanation
Indices: 73230031--73230303 Score: 370
Period size: 89 Copynumber: 3.1 Consensus size: 87
73230021 TGAAAAGTGA
* *
73230031 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
73230096 TGAGCTGATTTTTGAAAAACAT
66 TGAGTTGATTTTTGAAAAACAT
* * *
73230118 AAATTGGAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGTAG
1 AAATT-GA-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAA
*
73230183 TATGAGTTGATTTTTGAAAAACAG
64 TATGAGTTGATTTTTGAAAAACAT
* * * * *
73230207 AAATT-AAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAACTCATCTCTCGCG
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCA
*
73230270 ATATGAGTTGATTTTTGACAAACAT
63 ATATGAGTTGATTTTTGAAAAACAT
73230295 AAATTGAAA
1 AAATTGAAA
73230304 TTACCTCAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
86 27 0.17
87 6 0.04
88 47 0.29
89 83 0.51
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (87 bp):
AAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAACAT
Found at i:73230221 original size:13 final size:14
Alignment explanation
Indices: 73230196--73230229 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
73230186 GAGTTGATTT
73230196 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
73230210 TT-AAAAATAGAAA
1 TTGAAAAACAGAAA
73230223 TTGAAAA
1 TTGAAAA
73230230 GACCTCAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:73230497 original size:152 final size:146
Alignment explanation
Indices: 73230248--73230820 Score: 605
Period size: 152 Copynumber: 3.9 Consensus size: 146
73230238 CATGTGAGCC
* *
73230248 GAGGCTTAACTCATCTCTCGCGATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTCAG
1 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAA-TACCTCAG
* *
73230313 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATCGAA
65 CGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAA-AGCAGAAATCGAA
73230378 AATACCTCAGCGTGCCCT
129 AATACCTCAGCGTGCCCT
73230396 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTGACAAACATAAATTGAAATCACC
1 GAGGCTCAACTCATCTCTCGCAATATGAGTTGA----TTTTTGACAAACATAAATTGAAAT-ACC
* * * *
73230461 TCAGCGTCTCCTGAGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTTGGAAAGTAGAAATT
61 TCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGCAGAAATC
73230526 GAAAATACCTCAGCGTGCCCT
126 GAAAATACCTCAGCGTGCCCT
* * * * *
73230547 GAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTGAAAAACATAAATTGAAAATGCCTCAG
1 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTG-AAATACCTCAG
* * * * *
73230612 CATGC-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----T-AAAAACAGAAATTGAA
65 CGT-CTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGCAGAAATCGAA
* *
73230670 AGTGA-CTCAACACGTAAG-CC-
129 AAT-ACCTC-A-GCGT--GCCCT
* * * ** * *
73230690 AAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGA-AAGTAGAATTTGAAAATACCTC
1 GAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTGACAAACATAAATTG-AAATACCTC
* * * *
73230754 GGCGTGC-CCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAACAGAAAT-
63 AGCGT-CTCCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTGGAAAGCAGAAATC
73230817 GAAA
126 GAAA
73230821 CATCCACATA
Statistics
Matches: 372, Mismatches: 32, Indels: 40
0.84 0.07 0.09
Matches are distributed among these distances:
141 18 0.05
142 3 0.01
143 34 0.09
144 50 0.13
145 18 0.05
147 60 0.16
148 36 0.10
150 5 0.01
151 71 0.19
152 77 0.21
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (146 bp):
GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATACCTCAGC
GTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGCAGAAATCGAAAA
TACCTCAGCGTGCCCT
Found at i:73230552 original size:74 final size:74
Alignment explanation
Indices: 73230213--73230820 Score: 638
Period size: 75 Copynumber: 8.2 Consensus size: 74
73230203 ACAGAAATTA
* * * * * *
73230213 AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAACTCATCTCTCGCGATATGAG
1 AAAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAG
73230277 TTGA--TTTTTG
63 TTGATTTTTTTG
* * *
73230287 ACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
73230352 GATTTTTTTG
65 GATTTTTTTG
* * *
73230362 AAGAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
73230427 GATTTTTTTTTG
65 GA--TTTTTTTG
* * *
73230439 ACAAACATAAATTG-AAATCACCTCAGCGT-CTCCTGAGGCTCAACTCACTTCTCACAATATGAG
1 A-AAACAGAAATTGAAAAT-ACCTCAGCGTGC-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
73230502 TTGATTTTTTGG
63 TTGATTTTTTTG
** *
73230514 AAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT-
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
73230578 A-ATTTTTG
66 ATTTTTTTG
* * * *
73230586 AAAAACATAAATTGAAAATGCCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
73230651 GA------TA
65 GATTTTTTTG
* * *
73230655 AAAACAGAAATTGAAAGTGA-CTCAACACGTAAG-CC-AAGGCTCAACTCACCTCTCGCAATATG
1 AAAACAGAAATTGAAAAT-ACCTC-A-GCGT--GCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
73230717 AGTTAATTTTTTTG
61 AGTTGATTTTTTTG
** * * *
73230731 AAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTT
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTT
73230796 GATTTTTTTG
65 GATTTTTTTG
73230806 AAAACAGAAA-TGAAA
1 AAAACAGAAATTGAAA
73230821 CATCCACATA
Statistics
Matches: 449, Mismatches: 56, Indels: 58
0.80 0.10 0.10
Matches are distributed among these distances:
68 19 0.04
69 2 0.00
70 33 0.07
71 2 0.00
72 9 0.02
73 93 0.21
74 83 0.18
75 124 0.28
76 23 0.05
77 60 0.13
78 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:73243748 original size:26 final size:26
Alignment explanation
Indices: 73243669--73243757 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
73243659 ATATAAGTAA
* *
73243669 TATATAACTAGTAATATCAAAATATATA
1 TATATAA-T-GTAATATAAAAATATATG
* *
73243697 CATGATAATAT-ATATAAAAATATATG
1 TAT-ATAATGTAATATAAAAATATATG
*
73243723 TATATAATGTAATATGAAAATATATG
1 TATATAATGTAATATAAAAATATATG
73243749 TAGTATAAT
1 TA-TATAAT
73243758 ATTAAAATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 6 0.12
26 31 0.61
27 7 0.14
28 3 0.06
29 4 0.08
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (26 bp):
TATATAATGTAATATAAAAATATATG
Found at i:73243808 original size:32 final size:32
Alignment explanation
Indices: 73243764--73243828 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
73243754 TAATATTAAA
73243764 ATATAATAATACAACATTAAAAATATATGATAT
1 ATATAATAATACAACATTAAAAATATAT-ATAT
* *
73243797 ATATAA-AATACAATATTAAAAGTATATATAT
1 ATATAATAATACAACATTAAAAATATATATAT
73243828 A
1 A
73243829 ACATATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (32 bp):
ATATAATAATACAACATTAAAAATATATATAT
Found at i:73243839 original size:22 final size:22
Alignment explanation
Indices: 73243795--73243851 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
73243785 AATATATGAT
*
73243795 ATATATAAAAT-ACAATATTAAAA
1 ATATATAATATAAC-ATA-TAAAA
*
73243818 GTATAT-ATATAACATATAAAA
1 ATATATAATATAACATATAAAA
73243839 ATATATAATATAA
1 ATATATAATATAA
73243852 TACCCAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 10 0.34
22 12 0.41
23 7 0.24
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (22 bp):
ATATATAATATAACATATAAAA
Found at i:73245451 original size:24 final size:25
Alignment explanation
Indices: 73245406--73245469 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
73245396 ATATATGTAT
73245406 AAATATATATAAAAACATTTAAATG
1 AAATATATATAAAAACATTTAAATG
*
73245431 AAATAT-TATACAAA-ATGTTAAACT-
1 AAATATATATAAAAACAT-TTAAA-TG
73245455 -AATATGATATAAAAA
1 AAATAT-ATATAAAAA
73245470 AAAGAACTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
23 7 0.21
24 12 0.36
25 14 0.42
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (25 bp):
AAATATATATAAAAACATTTAAATG
Found at i:73247177 original size:15 final size:15
Alignment explanation
Indices: 73247159--73247215 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
73247149 TATCTGTTTT
73247159 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
73247174 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
73247189 ATTGAATTTATATTG
1 ATTGAATTTATATTG
73247204 ATTGAA-TTATAT
1 ATTGAATTTATAT
73247216 AATAAATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:73247193 original size:30 final size:28
Alignment explanation
Indices: 73247155--73247213 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
73247145 TGAATATCTG
73247155 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
73247184 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
73247213 T
1 T
73247214 ATAATAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:73247625 original size:23 final size:21
Alignment explanation
Indices: 73247599--73247655 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
73247589 AGGCACTTTA
*
73247599 TGTGTCATATTTCAGACGCCTCG
1 TGTGTCATA--TCAGACACCTCG
* *
73247622 TGTGTCGTATCAGGCACCTCG
1 TGTGTCATATCAGACACCTCG
*
73247643 TGTGTCGTATCAG
1 TGTGTCATATCAG
73247656 GCACTTTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 23 0.74
23 8 0.26
ACGTcount: A:0.16, C:0.25, G:0.26, T:0.33
Consensus pattern (21 bp):
TGTGTCATATCAGACACCTCG
Found at i:73247634 original size:21 final size:21
Alignment explanation
Indices: 73247610--73247673 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
73247600 GTGTCATATT
*
73247610 TCAGACGCCTCGTGTGTCGTA
1 TCAGACACCTCGTGTGTCGTA
*
73247631 TCAGGCACCTCGTGTGTCGTA
1 TCAGACACCTCGTGTGTCGTA
* * **
73247652 TCAGGCACTTTATGTGTCGTA
1 TCAGACACCTCGTGTGTCGTA
73247673 T
1 T
73247674 ACTGATCAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.33
Consensus pattern (21 bp):
TCAGACACCTCGTGTGTCGTA
Found at i:73247668 original size:23 final size:21
Alignment explanation
Indices: 73247617--73247673 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
73247607 ATTTCAGACG
73247617 CCTCGTGTGTCGTATCAGGCA
1 CCTCGTGTGTCGTATCAGGCA
73247638 CCTCGTGTGTCGTATCAGGCA
1 CCTCGTGTGTCGTATCAGGCA
* **
73247659 CTTTATGTGTCGTAT
1 CCTCGTGTGTCGTAT
73247674 ACTGATCAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.14, C:0.25, G:0.26, T:0.35
Consensus pattern (21 bp):
CCTCGTGTGTCGTATCAGGCA
Found at i:73247856 original size:18 final size:19
Alignment explanation
Indices: 73247835--73247875 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
73247825 AATGAAATGA
73247835 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
73247853 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
73247872 GAAA
1 GAAA
73247876 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:73249443 original size:59 final size:59
Alignment explanation
Indices: 73249371--73249490 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
73249361 CTGAATGGAT
73249371 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
1 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
73249430 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
1 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
73249489 AA
1 AA
73249491 AATGATCTTG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (59 bp):
AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
Found at i:73253853 original size:15 final size:15
Alignment explanation
Indices: 73253835--73253891 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
73253825 TATCTGTTTT
73253835 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
73253850 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
73253865 ATTGAATTTATATTG
1 ATTGAATTTATATTG
73253880 ATTGAA-TTATAT
1 ATTGAATTTATAT
73253892 AATAAATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:73253869 original size:30 final size:28
Alignment explanation
Indices: 73253831--73253889 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
73253821 TGAATATCTG
73253831 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
73253860 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
73253889 T
1 T
73253890 ATAATAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:73254291 original size:23 final size:23
Alignment explanation
Indices: 73254261--73254324 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
73254251 CGGCTTTACC
73254261 ATTT-AGGCACTTTATGTGTCGT
1 ATTTCAGGCACTTTATGTGTCGT
* * **
73254283 ATTTCAGGCGCCTCGTGTGTCGT
1 ATTTCAGGCACTTTATGTGTCGT
73254306 A--TCAGGCACTTTATGTGTC
1 ATTTCAGGCACTTTATGTGTC
73254325 ATATACTGAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
21 14 0.42
22 4 0.12
23 15 0.45
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (23 bp):
ATTTCAGGCACTTTATGTGTCGT
Found at i:73254511 original size:18 final size:19
Alignment explanation
Indices: 73254490--73254530 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
73254480 AATGAAATGA
73254490 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
73254508 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
73254527 GAAA
1 GAAA
73254531 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:73259333 original size:2 final size:2
Alignment explanation
Indices: 73259328--73259356 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73259318 CTTTTTTACT
73259328 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73259357 TATTCCTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73278306 original size:16 final size:16
Alignment explanation
Indices: 73278287--73278325 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
73278277 GTAAAAAGTA
73278287 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
73278303 ATATAAACTTTATAAT
1 ATATAAAATTTATAAT
73278319 A-ATAAAA
1 ATATAAAA
73278326 AAAAAGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:73286102 original size:14 final size:14
Alignment explanation
Indices: 73286083--73286109 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73286073 TAATTATTAT
73286083 TATTAGTGTTAATC
1 TATTAGTGTTAATC
73286097 TATTAGTGTTAAT
1 TATTAGTGTTAAT
73286110 TTATATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.52
Consensus pattern (14 bp):
TATTAGTGTTAATC
Found at i:73286834 original size:31 final size:31
Alignment explanation
Indices: 73286784--73286847 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
73286774 AATTATACAC
* *
73286784 ATAAATTTTTAATTGTGATTTAAATGTATAT
1 ATAAAATTTTAATTGTGATTCAAATGTATAT
* * *
73286815 ATAAAATTTTGATTTTGATTCAATTGTATAT
1 ATAAAATTTTAATTGTGATTCAAATGTATAT
73286846 AT
1 AT
73286848 TTAAATAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (31 bp):
ATAAAATTTTAATTGTGATTCAAATGTATAT
Found at i:73287966 original size:15 final size:14
Alignment explanation
Indices: 73287948--73287977 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
73287938 TTTCTTTTCG
73287948 TTTTTGTTGTTTTTT
1 TTTTTGTT-TTTTTT
73287963 TTTTTGTTTTTTTT
1 TTTTTGTTTTTTTT
73287977 T
1 T
73287978 AAATCTATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (14 bp):
TTTTTGTTTTTTTT
Found at i:73287969 original size:12 final size:12
Alignment explanation
Indices: 73287948--73287977 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
73287938 TTTCTTTTCG
*
73287948 TTTTTGTTGTTT
1 TTTTTTTTGTTT
73287960 TTTTTTTTGTTT
1 TTTTTTTTGTTT
73287972 TTTTTT
1 TTTTTT
73287978 AAATCTATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:73288852 original size:10 final size:10
Alignment explanation
Indices: 73288837--73288871 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
73288827 ACTATTGGTA
73288837 TATTATTATC
1 TATTATTATC
*
73288847 TATTATTATT
1 TATTATTATC
73288857 TCATTATTATC
1 T-ATTATTATC
73288868 TATT
1 TATT
73288872 CATCTATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (10 bp):
TATTATTATC
Found at i:73288862 original size:21 final size:23
Alignment explanation
Indices: 73288838--73288880 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
73288828 CTATTGGTAT
73288838 ATTATTATCTATT-AT-TATTTC
1 ATTATTATCTATTCATCTATTTC
73288859 ATTATTATCTATTCATCTATTT
1 ATTATTATCTATTCATCTATTT
73288881 GTTTATTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 13 0.65
22 2 0.10
23 5 0.25
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTATTATCTATTCATCTATTTC
Found at i:73290389 original size:14 final size:14
Alignment explanation
Indices: 73290370--73290399 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73290360 TATTTTCAAC
73290370 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
73290384 ATAGATTCACGCAT
1 ATAGATTAACGCAT
73290398 AT
1 AT
73290400 TTATAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:73300226 original size:26 final size:26
Alignment explanation
Indices: 73300033--73300228 Score: 87
Period size: 24 Copynumber: 8.0 Consensus size: 26
73300023 TCGGGCTGTA
*
73300033 TAAT-AGGAAGTTCAT-AAGAGCCA-
1 TAATCAGGAAGCTCATGAAGAGCCAT
* *
73300056 TAATTAGGAAGCTCA--AACGAGCCAA
1 TAATCAGGAAGCTCATGAA-GAGCCAT
* * * *
73300081 TAA-CGGGTAGCTC-CGAAGAGCTAT
1 TAATCAGGAAGCTCATGAAGAGCCAT
*
73300105 TAATCAGGAAGCTC-TGAATAG-CA-
1 TAATCAGGAAGCTCATGAAGAGCCAT
* * * * *
73300128 TATCTCAGAAAGTTCAAG-CGAGCCA-
1 TA-ATCAGGAAGCTCATGAAGAGCCAT
** *
73300153 T-ATGGGGAAGCTC-TGGAGAGCCAT
1 TAATCAGGAAGCTCATGAAGAGCCAT
** *
73300177 TAATCAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAGCTCATGAAGAGCCAT
* *
73300203 TAATCTGGAAGCTCATGAACAGCCAT
1 TAATCAGGAAGCTCATGAAGAGCCAT
73300229 ATATCGGGAT
Statistics
Matches: 125, Mismatches: 35, Indels: 23
0.68 0.19 0.13
Matches are distributed among these distances:
22 1 0.01
23 21 0.17
24 43 0.34
25 32 0.26
26 28 0.22
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
TAATCAGGAAGCTCATGAAGAGCCAT
Found at i:73303082 original size:3 final size:3
Alignment explanation
Indices: 73303064--73303098 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
73303054 ACTTTATCCC
* *
73303064 TTA TTA TTC TTC TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
73303099 GTTTGGATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:73304663 original size:3 final size:3
Alignment explanation
Indices: 73304655--73304684 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
73304645 TTTTTCTTTT
73304655 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
73304685 CTATTAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:73306317 original size:13 final size:13
Alignment explanation
Indices: 73306296--73306342 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
73306286 CTATTCAATT
*
73306296 AACATAAAATAAA
1 AACAAAAAATAAA
73306309 AACAAAAAAT-AA
1 AACAAAAAATAAA
* *
73306321 GACAACAAATAAA
1 AACAAAAAATAAA
73306334 AACAAAAAA
1 AACAAAAAA
73306343 ATAAGACAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.79, C:0.11, G:0.02, T:0.09
Consensus pattern (13 bp):
AACAAAAAATAAA
Found at i:73306330 original size:25 final size:26
Alignment explanation
Indices: 73306302--73306351 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
73306292 AATTAACATA
73306302 AAATAAAAAC-AAAAAATAAGACAAC
1 AAATAAAAACAAAAAAATAAGACAAC
73306327 AAATAAAAACAAAAAAATAAGACAA
1 AAATAAAAACAAAAAAATAAGACAA
73306352 TACCATATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.78, C:0.10, G:0.04, T:0.08
Consensus pattern (26 bp):
AAATAAAAACAAAAAAATAAGACAAC
Found at i:73306506 original size:15 final size:15
Alignment explanation
Indices: 73306486--73306524 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
73306476 CCATTTTCAG
73306486 CGATAACTTTATCGT
1 CGATAACTTTATCGT
*
73306501 CGATAACTTTCTCGT
1 CGATAACTTTATCGT
73306516 CGATAACTT
1 CGATAACTT
73306525 CTTCTGAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (15 bp):
CGATAACTTTATCGT
Found at i:73315774 original size:12 final size:12
Alignment explanation
Indices: 73315757--73315796 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
73315747 CAAATTTTTC
73315757 ATTTTAATATAT
1 ATTTTAATATAT
73315769 ATTTTAATATAT
1 ATTTTAATATAT
*
73315781 GTTTTAA-ATAT
1 ATTTTAATATAT
73315792 -TTTTA
1 ATTTTA
73315797 TATTATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 18 0.67
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (12 bp):
ATTTTAATATAT
Found at i:73317732 original size:29 final size:29
Alignment explanation
Indices: 73317681--73317738 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
73317671 TTATTTTTTC
*
73317681 AATTAATATTAAAAACCATAAAAAATCTAA
1 AATTAATATTAAAAAACATAAAAAA-CTAA
**
73317711 AATTAATA-TAAAAAATTTAAAAAACTAA
1 AATTAATATTAAAAAACATAAAAAACTAA
73317739 TCAAATTCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 13 0.52
30 8 0.32
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (29 bp):
AATTAATATTAAAAAACATAAAAAACTAA
Found at i:73320687 original size:5 final size:5
Alignment explanation
Indices: 73320672--73320702 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
73320662 AAAATGAATG
73320672 GAAAA -AAAA GAAAA GAAAA GAAAA GAAAA GA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GA
73320703 GAATAAGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:73324487 original size:14 final size:14
Alignment explanation
Indices: 73324468--73324506 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
73324458 TTGTTTCATT
*
73324468 GAAAATAACTTCTG
1 GAAAATGACTTCTG
*
73324482 GAAAATGATTTCTG
1 GAAAATGACTTCTG
73324496 GAAAATGACTT
1 GAAAATGACTT
73324507 AATTTCTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGACTTCTG
Found at i:73325093 original size:16 final size:16
Alignment explanation
Indices: 73325062--73325098 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73325052 ATGTGAAGAA
73325062 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
73325078 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
73325094 TATTA
1 TATTA
73325099 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:73325134 original size:16 final size:15
Alignment explanation
Indices: 73325113--73325158 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
73325103 AAAATTAAAA
*
73325113 TATTAAATAATTTAT
1 TATTTAATAATTTAT
*
73325128 TATTTAATAAATTA-
1 TATTTAATAATTTAT
*
73325142 TA-TTAGTAATTTAT
1 TATTTAATAATTTAT
73325156 TAT
1 TAT
73325159 ATGGCTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 9 0.36
14 4 0.16
15 12 0.48
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATAATTTAT
Found at i:73325246 original size:31 final size:30
Alignment explanation
Indices: 73325166--73325249 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 30
73325156 TATATGGCTA
* *
73325166 AATA-TAAATAATAAAATATGTTTGTTTAAT
1 AATATTAAATAATTAAATAT-TTTATTTAAT
*
73325196 AATATTAAA-AACTATAATATTTTATATTAAT
1 AATATTAAATAATTA-AATATTTTAT-TTAAT
73325227 AAT-TTAAATAATTTAAATATTTT
1 AATATTAAATAA-TTAAATATTTT
73325250 TAAAAATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
30 16 0.36
31 27 0.60
32 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.46
Consensus pattern (30 bp):
AATATTAAATAATTAAATATTTTATTTAAT
Found at i:73327231 original size:3 final size:3
Alignment explanation
Indices: 73327225--73327300 Score: 89
Period size: 3 Copynumber: 24.3 Consensus size: 3
73327215 ATTATTTCAC
* * *
73327225 TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT ATAG TAT TAT TAAT TGAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT T-AT
*
73327273 TAT TAT TAT TAT TAT TGT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
73327301 TCTTATTAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
3 56 0.90
4 6 0.10
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:73328241 original size:25 final size:24
Alignment explanation
Indices: 73328200--73328253 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
73328190 TAATTATTAC
* *
73328200 TAAAACATAATATAATAATAG-AA
1 TAAAACATAATAAAATAAAAGAAA
73328223 TAAAACATAACATAAAATAAAAGAAA
1 TAAAACAT-A-ATAAAATAAAAGAAA
73328249 TAAAA
1 TAAAA
73328254 TAAAACAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 8 0.31
24 1 0.04
25 10 0.38
26 7 0.27
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (24 bp):
TAAAACATAATAAAATAAAAGAAA
Found at i:73332096 original size:21 final size:19
Alignment explanation
Indices: 73332060--73332111 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
73332050 TCTTCTGTAC
73332060 TATTATATATATTTTCTAA
1 TATTATATATATTTTCTAA
73332079 TATTACTATATATATTTCTAA
1 TATTA-TATATAT-TTTCTAA
73332100 TA-TATATATATT
1 TATTATATATATT
73332112 AAAAAATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.03
19 12 0.39
20 9 0.29
21 9 0.29
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTATATATATTTTCTAA
Found at i:73345272 original size:87 final size:89
Alignment explanation
Indices: 73345059--73345275 Score: 260
Period size: 90 Copynumber: 2.4 Consensus size: 89
73345049 AATTTCTGTT
* * * * *
73345059 TTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCGGTTCACATACTGAGGTCTTTC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACATACTGAGGTATTTC
** * * * *
73345124 CAATTTCTGTTCTTTCAATTTATG
66 CAAAATATGCTCTTTCAAGTTAAG
*
73345148 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACAT-GTCGAGGTATT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACATACT-GAGGTATT
*
73345212 TTCAAAATATGCT-TTTCAAGTTAAG
64 TCCAAAATATGCTCTTTCAAGTTAAG
* *
73345237 TTTC-AAAAATCAACTCATATTACGAGAGGTTAGTTGAGC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
73345276 CTTTTAATTT
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
87 33 0.30
89 19 0.17
90 59 0.53
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (89 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACATACTGAGGTATTTC
CAAAATATGCTCTTTCAAGTTAAG
Found at i:73345483 original size:305 final size:305
Alignment explanation
Indices: 73344972--73345710 Score: 1282
Period size: 305 Copynumber: 2.4 Consensus size: 305
73344962 TTTAATTTTT
* *
73344972 TTTTAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
73345037 TGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
66 TGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
* *
73345102 GGTTCACATACTGAGGTCTTTCCAATTTCTGTTCTTTCAATTTATGTTTCAAAAAAATCAACTCA
131 GGTTCACATACTGAGGTATTTCCAATTTCTATTCTTTCAATTTATGTTTCAAAAAAATCAACTCA
73345167 TATTGCGAGAGGTGAGTTGAGCATCGGGTCACATGTCGAGGTATTTTCAAAATATGCTTTTCAAG
196 TATTGCGAGAGGTGAGTTGAGCATCGGGTCACATGTCGAGGTATTTTCAAAATATGCTTTTCAAG
*
73345232 TTAAGTTTCAAAAATCAACTCATATTACGAGAGGTTAGTTGAGCC
261 TTAAGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
73345277 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
73345342 TGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
66 TGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
*
73345407 GGTTCACATACTGAGGTATTTCCAATTTCTATTCTTTCAGTTTATGTTTCAAAAAAATCAACTCA
131 GGTTCACATACTGAGGTATTTCCAATTTCTATTCTTTCAATTTATGTTTCAAAAAAATCAACTCA
* *
73345472 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGCTTTTCAAG
196 TATTGCGAGAGGTGAGTTGAGCATCGGGTCACATGTCGAGGTATTTTCAAAATATGCTTTTCAAG
73345537 TTAAGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
261 TTAAGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
* * ****
73345582 TTTTAATTTCTATTTTTCAAAAATAAACTCATATTGTGAGAGGTGAGTTGAGCCTCAATACACGC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
* * * * * *
73345647 TGAGGCATTTTCAATTTCTGTTTTTC-AAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTC
66 TGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
73345711 AATACACGCT
Statistics
Matches: 412, Mismatches: 22, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
304 34 0.08
305 378 0.92
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (305 bp):
TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
TGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
GGTTCACATACTGAGGTATTTCCAATTTCTATTCTTTCAATTTATGTTTCAAAAAAATCAACTCA
TATTGCGAGAGGTGAGTTGAGCATCGGGTCACATGTCGAGGTATTTTCAAAATATGCTTTTCAAG
TTAAGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:73345575 original size:87 final size:89
Alignment explanation
Indices: 73345364--73345582 Score: 284
Period size: 90 Copynumber: 2.5 Consensus size: 89
73345354 AATTTCTGTT
* * *
73345364 TTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCGGTTCACATACTGAGGTATTTC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACTGAGGTATTTC
** * *
73345429 CAATTTCTATTCTTTCAGTTTATG
66 CAAAATCTACTCTTTCAGTTTAAG
*
73345453 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAT-GTCGAGGTATT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACT-GAGGTATT
* *
73345517 TTCAAAATCTGCT-TTTCAAG-TTAAG
64 TCCAAAATCTACTCTTTC-AGTTTAAG
*
73345542 TTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
73345583 TTTAATTTCT
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
87 36 0.31
89 17 0.15
90 63 0.54
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (89 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACTGAGGTATTTC
CAAAATCTACTCTTTCAGTTTAAG
Found at i:73345705 original size:73 final size:72
Alignment explanation
Indices: 73345582--73345782 Score: 330
Period size: 73 Copynumber: 2.8 Consensus size: 72
73345572 GAGTTGAGCC
* * **
73345582 TTTTAATTTCTATTTTTCAAAAATAAACTCATATTGTGAGAGGTGAGTTGAGCCTCAATACACGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACGC
73345647 TGAGGCA
66 TGAGGCA
*
73345654 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCAATACACG
1 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACG
*
73345719 CTGAGGTA
65 CTGAGGCA
73345727 TTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 -TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
73345783 TTTAATTTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
72 4 0.03
73 112 0.93
74 4 0.03
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (72 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACGC
TGAGGCA
Found at i:73345885 original size:54 final size:54
Alignment explanation
Indices: 73345728--73345890 Score: 290
Period size: 56 Copynumber: 3.0 Consensus size: 54
73345718 GCTGAGGTAT
73345728 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
73345782 TTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCC
1 TTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
73345838 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGC
73345891 TTCGGGTCAC
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
54 51 0.49
56 53 0.51
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (54 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:73354039 original size:43 final size:44
Alignment explanation
Indices: 73353974--73354105 Score: 131
Period size: 51 Copynumber: 2.9 Consensus size: 44
73353964 TAAGAAATTT
* *
73353974 CGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGTG-AGCATC
1 CGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGTAACATC
* * * *
73354017 CGAGCTTGTTGAGTGGTTCGAGTTTATGGTGGATGAGATACATGTAACATC
1 CGAGCTCGTTGAGTGGTCCGAGTTCAT--T--ATG-GAT--GTGTAACATC
*
73354068 CGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTGT
1 CGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGT
73354106 TATATGTTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
43 23 0.33
44 3 0.04
45 1 0.01
46 3 0.04
47 5 0.07
48 3 0.04
49 1 0.01
50 2 0.03
51 29 0.41
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (44 bp):
CGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGTAACATC
Found at i:73358669 original size:44 final size:43
Alignment explanation
Indices: 73358600--73358987 Score: 217
Period size: 44 Copynumber: 8.4 Consensus size: 43
73358590 CTTATCTCCT
*
73358600 TAAAGTTGCAGTGGAG-CAAGATGAAGCTACAAATCCTATACCCC
1 TAAAGTTGCAGTGG-GTC-AGATGAAACTACAAATCCTATACCCC
* * * *
73358644 TGAAGTTGCAGTGGGTCGGATTGAAGCTACAATTCCTATACCCC
1 TAAAGTTGCAGTGGGTCAGA-TGAAACTACAAATCCTATACCCC
* * * *
73358688 TAAAGTTGCAGTAGGTCGGAATGAAACTATAATGACGAATCTTAT-CTCCC
1 TAAAGTTGCAGTGGGTCAG-ATGAAAC-----T-ACAAATCCTATAC-CCC
* * * * * **
73358738 TGAAGTTACAGTGGAGTAAGATGAAGCTACAAATCCTAAACCTT
1 TAAAGTTGCAGTGG-GTCAGATGAAACTACAAATCCTATACCCC
*
73358782 TAAAGTTGCAGTGGGTCAGATTAAAACTACAAATGACAAATCT-TATCTCCC
1 TAAAGTTGCAGTGGGTCAGA-TGAAACTACAAAT--C----CTATA-C-CCC
* * ** *
73358833 TAAAATTACAGTGGAACAAGATGAAGCTACAAATCCTATACCCC
1 TAAAGTTGCAGTGGGTC-AGATGAAACTACAAATCCTATACCCC
* * *
73358877 TGAAGTTGCAGTGGGTCAGACTGAAACTACAATGACGAATCTTAT-CTCTC
1 TAAAGTTGCAGTGGGTCAGA-TGAAACTAC----A--AATCCTATAC-CCC
* *
73358927 TAAAGTTGCAGTGGGACAAGATAAAACTACAAATCCTATACCCC
1 TAAAGTTGCAGTGGGTC-AGATGAAACTACAAATCCTATACCCC
*
73358971 TGAAGTTGCAGTGGGTC
1 TAAAGTTGCAGTGGGTC
73358988 GGGTTAAAAC
Statistics
Matches: 262, Mismatches: 49, Indels: 66
0.69 0.13 0.18
Matches are distributed among these distances:
43 11 0.04
44 137 0.52
45 7 0.03
46 4 0.02
48 1 0.00
49 5 0.02
50 63 0.24
51 31 0.12
52 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (43 bp):
TAAAGTTGCAGTGGGTCAGATGAAACTACAAATCCTATACCCC
Found at i:73358697 original size:138 final size:138
Alignment explanation
Indices: 73358523--73358813 Score: 404
Period size: 138 Copynumber: 2.1 Consensus size: 138
73358513 TGCAGGGAAA
** * *
73358523 CAGA-TGAAGCTACAATTCCTATACCTTTAAACTTGCAGTAGGTCAGAATAAAATTACAATGGCG
1 CAGATTGAAGCTACAATTCCTATACCCCTAAACTTGCAGTAGGTCAGAATAAAACTACAATGACG
* * * *
73358587 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
66 AATCTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTAAACCCCTAAAGTTG
73358652 CAGTGGGT
131 CAGTGGGT
* * * * *
73358660 CGGATTGAAGCTACAATTCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTATAATGACG
1 CAGATTGAAGCTACAATTCCTATACCCCTAAACTTGCAGTAGGTCAGAATAAAACTACAATGACG
* * **
73358725 AATCTTATCTCCCTGAAGTTACAGTGGAGTAAGATGAAGCTACAAATCCTAAACCTTTAAAGTTG
66 AATCTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTAAACCCCTAAAGTTG
73358790 CAGTGGGT
131 CAGTGGGT
* *
73358798 CAGATTAAAACTACAA
1 CAGATTGAAGCTACAA
73358814 ATGACAAATC
Statistics
Matches: 133, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
137 3 0.02
138 130 0.98
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (138 bp):
CAGATTGAAGCTACAATTCCTATACCCCTAAACTTGCAGTAGGTCAGAATAAAACTACAATGACG
AATCTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTAAACCCCTAAAGTTG
CAGTGGGT
Found at i:73358740 original size:94 final size:93
Alignment explanation
Indices: 73358628--73359118 Score: 507
Period size: 94 Copynumber: 5.2 Consensus size: 93
73358618 AGATGAAGCT
* * *
73358628 ACAAATCCTATAC-CCCTGAAGTTGCAGTGGGTCGGATTGAAGCTACAATTCCTATACCCCTAAA
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGGTCAGA-TGAAGCTACAAATCCTATACCCCTAAA
* * * *
73358692 GTTGCAGTAGGTCGGAATGAAACTATAATG
64 GTTGCAGTGGGTCAGAATAAAACTACAATG
* * * * **
73358722 ACGAATCTTATCTCCCTGAAGTTACAGTGGAGTAAGATGAAGCTACAAATCCTAAACCTTTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGG-GTCAGATGAAGCTACAAATCCTATACCCCTAAAG
*
73358787 TTGCAGTGGGTCAGATTAAAACTACAAATG
65 TTGCAGTGGGTCAGAATAAAACTAC-AATG
* * * ** *
73358817 ACAAATCTTATCTCCCTAAAATTACAGTGGAACAAGATGAAGCTACAAATCCTATACCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGGTC-AGATGAAGCTACAAATCCTATACCCCTAAAG
* *
73358882 TTGCAGTGGGTCAGACTGAAACTACAATG
65 TTGCAGTGGGTCAGAATAAAACTACAATG
* * * * * * *
73358911 ACGAATCTTATCTCTCTAAAGTTGCAGTGGGACAAGATAAAACTACAAATCCTATACCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGGTC-AGATGAAGCTACAAATCCTATACCCCTAAAG
* ** *
73358976 TTGCAGTGGGTCGGGTTAAAACTACAATA
65 TTGCAGTGGGTCAGAATAAAACTACAATG
* * * * * * * *
73359005 AAAAATCTTATCTCCCTGAAATTGCAATGGAGTAAGATGAAGCTATAAATCTTATGCCTCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGG-GTCAGATGAAGCTACAAATCCTATACCCCTAAAG
* **
73359070 TTGCAGTGGGTTAGAATAAAACTACAACA
65 TTGCAGTGGGTCAGAATAAAACTACAATG
*
73359099 ACAAATCTTATCTCCTTGAA
1 ACAAATCTTATCTCCCTGAA
73359119 TTTGTAACGA
Statistics
Matches: 332, Mismatches: 60, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
93 1 0.00
94 245 0.74
95 86 0.26
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (93 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGGTCAGATGAAGCTACAAATCCTATACCCCTAAAGT
TGCAGTGGGTCAGAATAAAACTACAATG
Found at i:73358872 original size:189 final size:188
Alignment explanation
Indices: 73358665--73359118 Score: 568
Period size: 189 Copynumber: 2.4 Consensus size: 188
73358655 TGGGTCGGAT
* * * *
73358665 TGAAGCTACAATTCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTATAATGACGAATCT
1 TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGACGAATCT
* * * **
73358730 TATCTCCCTGAAGTTACAGT-GGAGTAAGATGAAGCTACAAATCCTAAACCTTTAAAGTTGCAGT
66 TATCTCCCTGAAGTTACAGTGGGA-CAAGATAAAACTACAAATCCTAAACCCCTAAAGTTGCAGT
* * *
73358794 GGGTCAGATTAAAACTACAAATGACAAATCTTATCTCCCTAAAATTACAGTGGAACAAGA
130 GGGTCAGATTAAAACTAC-AATAAAAAATCTTATCTCCCTAAAATTACAATGGAACAAGA
* *
73358854 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGACTGAAACTACAATGACGAATCT
1 TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGACGAATCT
* * * * *
73358919 TATCTCTCTAAAGTTGCAGTGGGACAAGATAAAACTACAAATCCTATACCCCTGAAGTTGCAGTG
66 TATCTCCCTGAAGTTACAGTGGGACAAGATAAAACTACAAATCCTAAACCCCTAAAGTTGCAGTG
* * * * **
73358984 GGTCGGGTTAAAACTACAATAAAAAATCTTATCTCCCTGAAATTGCAATGGAGTAAGA
131 GGTCAGATTAAAACTACAATAAAAAATCTTATCTCCCTAAAATTACAATGGAACAAGA
* * * * * * ** *
73359042 TGAAGCTATAAATCTTATGCCTCTAAAGTTGCAGTGGGTTAGAATAAAACTACAACAACAAATCT
1 TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGACGAATCT
*
73359107 TATCTCCTTGAA
66 TATCTCCCTGAA
73359119 TTTGTAACGA
Statistics
Matches: 225, Mismatches: 39, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
188 97 0.43
189 125 0.56
190 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (188 bp):
TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGACGAATCT
TATCTCCCTGAAGTTACAGTGGGACAAGATAAAACTACAAATCCTAAACCCCTAAAGTTGCAGTG
GGTCAGATTAAAACTACAATAAAAAATCTTATCTCCCTAAAATTACAATGGAACAAGA
Found at i:73358954 original size:50 final size:49
Alignment explanation
Indices: 73358782--73358958 Score: 136
Period size: 50 Copynumber: 3.7 Consensus size: 49
73358772 CCTAAACCTT
* *
73358782 TAAAGTTGCAGTGGGTCAGATTAAAACTACAAATGACAAATCTTATCTCCC
1 TAAAGTTGCAGTGGGACAGACTAAAACTAC-AATGAC-AATCTTATCTCCC
* * * * * *
73358833 TAAAATTACAGTGGAACAAGA-TGAAGCTAC----A-AATCCTATAC-CCC
1 TAAAGTTGCAGTGGGAC-AGACTAAAACTACAATGACAATCTTAT-CTCCC
* * * *
73358877 TGAAGTTGCAGTGGGTCAGACTGAAACTACAATGACGAATCTTATCTCTC
1 TAAAGTTGCAGTGGGACAGACTAAAACTACAATGAC-AATCTTATCTCCC
73358927 TAAAGTTGCAGTGGGACAAGA-TAAAACTACAA
1 TAAAGTTGCAGTGGGAC-AGACTAAAACTACAA
73358959 ATCCTATACC
Statistics
Matches: 97, Mismatches: 18, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
43 3 0.03
44 30 0.31
45 1 0.01
46 1 0.01
48 1 0.01
49 1 0.01
50 34 0.35
51 23 0.24
52 3 0.03
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (49 bp):
TAAAGTTGCAGTGGGACAGACTAAAACTACAATGACAATCTTATCTCCC
Found at i:73358996 original size:44 final size:44
Alignment explanation
Indices: 73358859--73359002 Score: 128
Period size: 44 Copynumber: 3.1 Consensus size: 44
73358849 CAAGATGAAG
* *
73358859 CTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGACTGAAACTA
1 CTACAAATCCTATACCCCTGAAGTTGCAGTGGGTC-GAGTTAAA--A
* * * * * * *
73358906 CAATGACGAATCTTAT-CTCTCTAAAGTTGCAGTGGGACAAGATAAAA
1 C--T-ACAAATCCTATAC-CCCTGAAGTTGCAGTGGGTCGAGTTAAAA
*
73358953 CTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGGTTAAAA
1 CTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAGTTAAAA
73358997 CTACAA
1 CTACAA
73359003 TAAAAAATCT
Statistics
Matches: 75, Mismatches: 17, Indels: 13
0.71 0.16 0.12
Matches are distributed among these distances:
44 38 0.51
45 2 0.03
47 3 0.04
49 6 0.08
50 26 0.35
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (44 bp):
CTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAGTTAAAA
Found at i:73359786 original size:21 final size:21
Alignment explanation
Indices: 73359762--73359818 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
73359752 AAAAAAAATG
73359762 CAAAGAAAAAAAG-AGAAATTT
1 CAAA-AAAAAAAGTAGAAATTT
* *
73359783 CAAAAACAAAGGTAGAAATTT
1 CAAAAAAAAAAGTAGAAATTT
* *
73359804 CAAAAACAAAGGTAG
1 CAAAAAAAAAAGTAG
73359819 TCTATTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.18
21 27 0.82
ACGTcount: A:0.61, C:0.09, G:0.16, T:0.14
Consensus pattern (21 bp):
CAAAAAAAAAAGTAGAAATTT
Found at i:73359825 original size:22 final size:21
Alignment explanation
Indices: 73359775--73359818 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
73359765 AGAAAAAAAG
73359775 AGAAATTTCAAAAACAAAGGT
1 AGAAATTTCAAAAACAAAGGT
73359796 AGAAATTTCAAAAACAAAGGT
1 AGAAATTTCAAAAACAAAGGT
73359817 AG
1 AG
73359819 TCTATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.16, T:0.18
Consensus pattern (21 bp):
AGAAATTTCAAAAACAAAGGT
Found at i:73363430 original size:18 final size:18
Alignment explanation
Indices: 73363407--73363443 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
73363397 TTTTTTTTTC
73363407 ATTTATTCAAGAGCTAAA
1 ATTTATTCAAGAGCTAAA
73363425 ATTTATTCAAGAGCTAAA
1 ATTTATTCAAGAGCTAAA
73363443 A
1 A
73363444 AACTTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (18 bp):
ATTTATTCAAGAGCTAAA
Found at i:73369522 original size:9 final size:9
Alignment explanation
Indices: 73369510--73369595 Score: 109
Period size: 9 Copynumber: 9.6 Consensus size: 9
73369500 AAATTAACTT
73369510 AATTAACCG
1 AATTAACCG
*
73369519 AATTAATCG
1 AATTAACCG
*
73369528 AATTACCCG
1 AATTAACCG
*
73369537 AATTACCCG
1 AATTAACCG
* *
73369546 AATTACCCA
1 AATTAACCG
*
73369555 AATTAACCA
1 AATTAACCG
*
73369564 AATTAACCA
1 AATTAACCG
73369573 AATTAACCG
1 AATTAACCG
73369582 AATTAACCG
1 AATTAACCG
73369591 AATTA
1 AATTA
73369596 TTTGTATAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 71 1.00
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:73369626 original size:6 final size:6
Alignment explanation
Indices: 73369615--73369667 Score: 70
Period size: 6 Copynumber: 8.5 Consensus size: 6
73369605 AATTATATGT
* *
73369615 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTA GTTTTAGA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA
73369665 TTT
1 TTT
73369668 ATTAAATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 33 0.80
7 7 0.17
8 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:73375657 original size:42 final size:39
Alignment explanation
Indices: 73375607--73375685 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
73375597 TGATAATTAT
**
73375607 AAAATAAAATTATAAAATCTAATAAAAAAATAGTTTTAATA
1 AAAATAAAAACATAAAA--TAATAAAAAAATAGTTTTAATA
* *
73375648 AAAATTAAAAACATAAAATAATAAATAAATATTTTTAA
1 AAAA-TAAAAACATAAAATAATAAAAAAATAGTTTTAA
73375686 ACATCTTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 18 0.55
41 4 0.12
42 11 0.33
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.32
Consensus pattern (39 bp):
AAAATAAAAACATAAAATAATAAAAAAATAGTTTTAATA
Found at i:73377177 original size:18 final size:19
Alignment explanation
Indices: 73377154--73377198 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
73377144 AATGCAAAGT
*
73377154 AAATGATAATA-ATGAGCA
1 AAATGATAATAGATGAGAA
*
73377172 AAATGAAAATAGTATGAGAA
1 AAATGATAATAG-ATGAGAA
73377192 AAATGAT
1 AAATGAT
73377199 GATTATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 10 0.45
20 12 0.55
ACGTcount: A:0.58, C:0.02, G:0.18, T:0.22
Consensus pattern (19 bp):
AAATGATAATAGATGAGAA
Found at i:73393370 original size:29 final size:29
Alignment explanation
Indices: 73393304--73393394 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
73393294 AAGTCTACAT
* * *
73393304 ACATGCATATGGCCCACTAGG-CCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
73393332 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
73393361 ACATTCATATGGTCCATTTGGCCCGAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
73393390 A-ATTC
1 ACATTC
73393395 CAAGCCATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 22 0.41
29 32 0.59
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:73396128 original size:44 final size:43
Alignment explanation
Indices: 73395991--73396563 Score: 185
Period size: 44 Copynumber: 12.7 Consensus size: 43
73395981 TATCTCTTTG
*
73395991 AAGTTGCAGTGGAGCAGATTAAAGTCACAGATATTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTAAAGT-ACAAATATTATCTCCCTA
* * ** * *
73396035 AAGTTGTAGTGGAGTAGATCGAAGATAGCAAATTTTATCTCTCC-G
1 AAGTTGCAGTGGAGCAGATTAAAG-TA-CAAATATTATCTC-CCTA
* * **
73396080 AAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTAAAG-TACAAATATTATCTCCCTA
* * * * * * * * * *
73396124 AAGTTGCAATGAAACAGGTTAAAAATAGCAAATCTTATTTTCTTG
1 AAGTTGCAGTGGAGCAGATT-AAAGTA-CAAATATTATCTCCCTA
* * * * * * *
73396169 AGGCTACAGTGGAACATATTAAGGCTATCAAGTTACAAATTTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGA-T-----TA--AAG-TACAAATATTATCTCCCTA
* * * * *
73396221 AAGTTGAAGTGGAGCAGGTTGAAGTTACAAGTTTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTAAAG-TACAAATATTATCTCCCTA
* * * * * * *
73396265 AAGTTGCTGTGAAGCAGACTGAAGATAGCGAATCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTAAAG-TA-CAAATATTATCTCCCTA
* ** * **
73396310 AAGTTGCAGTGAAGCAGATTACAACCACTAACCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTA-AAGTACAAATATTATCTCCCTA
* * * * * * * *
73396354 AAGTTGTAGTGGAGCAGGTTGAAGATACAAGTCTTATCTTCTTG
1 AAGTTGCAGTGGAGCAGATTAAAG-TACAAATATTATCTCCCTA
** * * * * * *
73396398 AAGTTGCAAAGGAGCAAATTAAAGATAGAAAATCTTATTTCCTTG
1 AAGTTGCAGTGGAGCAGATTAAAG-TA-CAAATATTATCTCCCTA
* * ** * * *
73396443 AAGTTGTAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTG
1 AAGTTGCAGTGGAGCAGATTAAAG-TA-CAAATATTATCTCCCTA
* * * * ** ** *
73396488 AAGTCGCAGTAGAGCAAATTAAAGCTATAAACCTTATCTTTCTG
1 AAGTTGCAGTGGAGCAGATTAAAG-TACAAATATTATCTCCCTA
*
73396532 AAGTTGCAGTGGAGTAGATTAAAGCTACAAAT
1 AAGTTGCAGTGGAGCAGATTAAAG-TACAAAT
73396564 TACAAATCTT
Statistics
Matches: 391, Mismatches: 119, Indels: 38
0.71 0.22 0.07
Matches are distributed among these distances:
43 4 0.01
44 194 0.50
45 156 0.40
46 6 0.02
50 1 0.00
51 2 0.01
52 26 0.07
53 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (43 bp):
AAGTTGCAGTGGAGCAGATTAAAGTACAAATATTATCTCCCTA
Found at i:73396435 original size:89 final size:90
Alignment explanation
Indices: 73396254--73396511 Score: 226
Period size: 89 Copynumber: 2.9 Consensus size: 90
73396244 GTTACAAGTT
* * * *
73396254 TTATCTCCCTAAAGTTGCT-GTGAAGCAGA-CTGAAGATAGCGAATCTTATCTCCCTGAAGTTGC
1 TTATCTCCCTAAAGTTG-TAGTGGAGCAGATC-GAAGATAGCAAATCTTATCTCTCTGAAGTCGC
* * ** ** *
73396317 AG-TGAAGCAGATTACAA-CCA-CTAACC
64 AGAAG-AGCAAATTA-AAGATAGAAAATC
* * * *
73396343 TTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATA-CAAGTCTTATCT-TCTTGAAGTTGCA
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATCGAAGATAGCAAATCTTATCTCTC-TGAAGTCGCA
73396406 -AAGGAGCAAATTAAAGATAGAAAATC
65 GAA-GAGCAAATTAAAGATAGAAAATC
* * * *
73396432 TTATTTCCTTGAAGTTGTAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTGAAGTCGCAG
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATCGAAGATAGCAAATCTTATCTCTCTGAAGTCGCAG
*
73396497 TAGAGCAAATTAAAG
66 AAGAGCAAATTAAAG
73396512 CTATAAACCT
Statistics
Matches: 137, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
87 3 0.02
88 30 0.22
89 68 0.50
90 33 0.24
91 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (90 bp):
TTATCTCCCTAAAGTTGTAGTGGAGCAGATCGAAGATAGCAAATCTTATCTCTCTGAAGTCGCAG
AAGAGCAAATTAAAGATAGAAAATC
Found at i:73396448 original size:133 final size:133
Alignment explanation
Indices: 73396210--73396453 Score: 317
Period size: 133 Copynumber: 1.8 Consensus size: 133
73396200 GTTACAAATT
* * * ***
73396210 TTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGTTACAAGTTTTATCTCCCTAAAGTTGCTGT
1 TTATCTCCCTAAAGTTGAAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTAAAGTTGCAAA
* * **
73396275 GAAGCAGACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTA
66 GAAGCAAACTAAAGATAGAAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTA
73396340 ACC
131 ACC
* * * *
73396343 TTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGAAGTTGCAAA
1 TTATCTCCCTAAAGTTGAAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTAAAGTTGCAAA
* * * * *
73396408 GGAGCAAATTAAAGATAGAAAATCTTATTTCCTTGAAGTTGTAGTG
66 GAAGCAAACTAAAGATAGAAAATCTTATCTCCCTGAAGTTGCAGTG
73396454 GAGTAGATCG
Statistics
Matches: 92, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
133 92 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (133 bp):
TTATCTCCCTAAAGTTGAAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTAAAGTTGCAAA
GAAGCAAACTAAAGATAGAAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTA
ACC
Found at i:73396490 original size:45 final size:44
Alignment explanation
Indices: 73396202--73396734 Score: 213
Period size: 44 Copynumber: 11.9 Consensus size: 44
73396192 GCTATCAAGT
* * * * * *
73396202 TACAAATTTTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGT
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATCGAAGA
* * * * * *
73396246 TACAAGTTTTATCTCCCTAAAGTTGCTGTGAAGCAGA-CTGAAGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATC-GAAGA
* * * *
73396290 TAGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAC-AA-C
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-T-CGAAGA
* * * * * * * *
73396335 CACTAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATCGAAGA
* ** * **
73396379 TACAAGTCTTATCT-TCTTGAAGTTGCAAAGGAGCAAATTAAAGA
1 TACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATCGAAGA
* * * *
73396423 TAGAAAATCTTATTTC-CTTGAAGTTGTAGTGGAGTAGATCGAAGA
1 TA-CAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATCGAAGA
* * * ** *
73396468 TAGCAAATCTTATCTCTCTGAAGTCGCAGTAGAGCAAATTAAAGC
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATCGAAGA
* * * * * *
73396513 TATAAACCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-T----CGA-AGA
* * * *
73396563 TTACAAATCTTAACTC-CTTGAAGTTACAATGGAGTAGATCGAAGA
1 -TACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATCGAAGA
* * * * * * *
73396608 TAGCAAATATTATCTCTCTAAAGTTACAGTAGAGCATAT-TAAAA
1 TA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATCGAAGA
* * * *
73396652 CTATAAACCTTATCTC-CTTGAAGTTGCAGCGGA-CTAGATTGAA-A
1 -TACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGC-AGATCGAAGA
* * * * *
73396696 CTACAAGTCTTATCTCCCTGAAATTGTAGTGGAGTAGAT
1 -TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
73396735 TGAAACTACA
Statistics
Matches: 363, Mismatches: 99, Indels: 54
0.70 0.19 0.10
Matches are distributed among these distances:
43 6 0.02
44 185 0.51
45 132 0.36
46 6 0.02
48 1 0.00
49 1 0.00
50 3 0.01
51 29 0.08
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATCGAAGA
Found at i:73396534 original size:89 final size:90
Alignment explanation
Indices: 73396285--73396550 Score: 269
Period size: 89 Copynumber: 3.0 Consensus size: 90
73396275 GAAGCAGACT
* * * *
73396285 GAAGATAGCGAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATTACAA-CCACT-AACCTTAT
1 GAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAG-AGCAAATTA-AAGCTACTAAACCTTAT
* * * * *
73396347 CTCCCTAAAGTTGTAGTGGAGCAGGTT
64 CTTCCTGAAGTTGTAGTGGAGTAGATC
* * * ** *
73396374 GAAGATA-CAAGTCTTATCT-TCTTGAAGTTGCA-AAGGAGCAAATTAAAGATAGAAAATCTTAT
1 GAAGATAGCAAATCTTATCTCTC-TGAAGTTGCAGTA-GAGCAAATTAAAGCTACTAAACCTTAT
73396436 -TTCCTTGAAGTTGTAGTGGAGTAGATC
64 CTTCC-TGAAGTTGTAGTGGAGTAGATC
*
73396463 GAAGATAGCAAATCTTATCTCTCTGAAGTCGCAGTAGAGCAAATTAAAGCTA-TAAACCTTATCT
1 GAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTACTAAACCTTATCT
* *
73396527 TTCTGAAGTTGCAGTGGAGTAGAT
66 TCCTGAAGTTGTAGTGGAGTAGAT
73396551 TAAAGCTACA
Statistics
Matches: 144, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
87 3 0.02
88 32 0.22
89 68 0.47
90 38 0.26
91 3 0.02
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (90 bp):
GAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTACTAAACCTTATCT
TCCTGAAGTTGTAGTGGAGTAGATC
Found at i:73396610 original size:140 final size:140
Alignment explanation
Indices: 73396427--73396701 Score: 392
Period size: 140 Copynumber: 2.0 Consensus size: 140
73396417 TAAAGATAGA
** ** * * *
73396427 AAATCTTATTTCCTTGAAGTTGTAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTGAAGT
1 AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
* * * * *
73396492 CGCAGTAGAGCAAATTAAAGCTATAAACCTTATCT-TTCTGAAGTTGCAGTGGAGTAGATT-AAA
66 CACAGTAGAGCAAATTAAAACTATAAACCTTATCTCCT-TGAAGTTGCAGCGGACTAGATTGAAA
73396555 GCTACAAATTAC
130 -CTACAAATTAC
73396567 AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
1 AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
* *
73396632 TACAGTAGAGCATATTAAAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTGAAAC
66 CACAGTAGAGCAAATTAAAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTGAAAC
73396697 TACAA
131 TACAA
73396702 GTCTTATCTC
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
140 115 0.97
141 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30
Consensus pattern (140 bp):
AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
CACAGTAGAGCAAATTAAAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTGAAAC
TACAAATTAC
Found at i:73396697 original size:44 final size:44
Alignment explanation
Indices: 73396649--73396745 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
73396639 GAGCATATTA
* * *
73396649 AAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTG
1 AAACTACAAACCTTATCTCCCTGAAATTGCAGCGGACTAGATTG
** * * *
73396693 AAACTACAAGTCTTATCTCCCTGAAATTGTAGTGGAGTAGATTG
1 AAACTACAAACCTTATCTCCCTGAAATTGCAGCGGACTAGATTG
73396737 AAACTACAA
1 AAACTACAA
73396746 CTCCTCGAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (44 bp):
AAACTACAAACCTTATCTCCCTGAAATTGCAGCGGACTAGATTG
Found at i:73398162 original size:3 final size:3
Alignment explanation
Indices: 73398154--73398216 Score: 90
Period size: 3 Copynumber: 21.0 Consensus size: 3
73398144 CTTAACATTG
* * *
73398154 TAT TAT TAT TAT TAT TAT TAT CAT TAC TAT TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
73398202 TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT
73398217 ATTTCTTTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:73399453 original size:17 final size:17
Alignment explanation
Indices: 73399433--73399494 Score: 115
Period size: 17 Copynumber: 3.6 Consensus size: 17
73399423 AAGAACTAAA
*
73399433 TTGTAAAAGTGTAAAAC
1 TTGTGAAAGTGTAAAAC
73399450 TTGTGAAAGTGTAAAAC
1 TTGTGAAAGTGTAAAAC
73399467 TTGTGAAAGTGTAAAAC
1 TTGTGAAAGTGTAAAAC
73399484 TTGTGAAAGTG
1 TTGTGAAAGTG
73399495 ATTAAATAGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 44 1.00
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (17 bp):
TTGTGAAAGTGTAAAAC
Found at i:73400601 original size:20 final size:20
Alignment explanation
Indices: 73400562--73400612 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
73400552 AGTGTTTAAT
* *
73400562 TTCCGTTTAGCTCTTATGAGC
1 TTCCG-TTAACTCATATGAGC
*
73400583 TTCCGTTAACTCATATGAGT
1 TTCCGTTAACTCATATGAGC
*
73400603 TTCAGTTAAC
1 TTCCGTTAAC
73400613 CCTTTTGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (20 bp):
TTCCGTTAACTCATATGAGC
Found at i:73400686 original size:21 final size:20
Alignment explanation
Indices: 73400661--73400725 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
73400651 TAGCCTTCGG
73400661 GCTTCCGTTTAGAACTTGTGT
1 GCTTCCGTTTAG-ACTTGTGT
* * *
73400682 GCTTCAG-TTAGCCTT-TGG
1 GCTTCCGTTTAGACTTGTGT
73400700 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAG-ACTTGTGT
*
73400721 ACTTC
1 GCTTC
73400726 AGTTAGCCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 8 0.24
19 7 0.21
20 7 0.21
21 12 0.35
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGACTTGTGT
Found at i:73400691 original size:39 final size:39
Alignment explanation
Indices: 73400643--73400782 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
73400633 GCTCTGATGA
* *
73400643 GCTTTAGTTAGCCTTCGGGCTTCCGTTTAGAACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
73400682 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * * *
73400721 ACTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACCTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
73400760 GCTTCAGTTAGACTTTGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
73400783 AGATCACGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:73400783 original size:18 final size:18
Alignment explanation
Indices: 73400643--73400784 Score: 77
Period size: 18 Copynumber: 7.4 Consensus size: 18
73400633 GCTCTGATGA
* * *
73400643 GCTTTAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTTGG
* *
73400661 GCTTCCGTTTAGAACTTGTGT
1 GCTTCAG-TTAG-ACTT-TGG
*
73400682 GCTTCAGTTAGCCTTTGG
1 GCTTCAGTTAGACTTTGG
* *
73400700 GCTTCCGTTTAGCACTTGTGT
1 GCTTCAG-TTAG-ACTT-TGG
* * *
73400721 ACTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTTGG
* * *
73400739 GCTTCTGTTTAGCACCTATGT
1 GCTTCAG-TTAG-A-CTTTGG
73400760 GCTTCAGTTAGACTTTGG
1 GCTTCAGTTAGACTTTGG
73400778 GCTTCAG
1 GCTTCAG
73400785 ATCACGATGT
Statistics
Matches: 90, Mismatches: 25, Indels: 18
0.68 0.19 0.14
Matches are distributed among these distances:
18 30 0.33
19 19 0.21
20 18 0.20
21 23 0.26
ACGTcount: A:0.13, C:0.23, G:0.25, T:0.39
Consensus pattern (18 bp):
GCTTCAGTTAGACTTTGG
Found at i:73401489 original size:13 final size:13
Alignment explanation
Indices: 73401466--73401499 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
73401456 AGTTTTTTTT
73401466 AAATAATAATAATA
1 AAATAA-AATAATA
73401480 AAATAAAATAATA
1 AAATAAAATAATA
73401493 AAATAAA
1 AAATAAA
73401500 TTCTGGAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAAAATAATA
Found at i:73407661 original size:28 final size:28
Alignment explanation
Indices: 73407593--73407651 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
73407583 GAAATCGAGG
*
73407593 ATAAACGAGGAAAAGAGAAAATTTCGGA
1 ATAAACGAGGAAAAGAGAAAATTTCAGA
73407621 ATAAACGAGGAAAAGAGAAAATTTCAGA
1 ATAAACGAGGAAAAGAGAAAATTTCAGA
73407649 ATA
1 ATA
73407652 GTTCTAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.15
Consensus pattern (28 bp):
ATAAACGAGGAAAAGAGAAAATTTCAGA
Found at i:73407970 original size:20 final size:20
Alignment explanation
Indices: 73407931--73407981 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
73407921 TGTGTTTACT
* *
73407931 TTCCGTTTAGCTCTTATGAGC
1 TTCCG-TTAACTCATATGAGC
*
73407952 TTCCGTTAACTCATATGAGT
1 TTCCGTTAACTCATATGAGC
*
73407972 TTCAGTTAAC
1 TTCCGTTAAC
73407982 CCTTTTGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (20 bp):
TTCCGTTAACTCATATGAGC
Found at i:73408053 original size:39 final size:39
Alignment explanation
Indices: 73408010--73408133 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
73408000 CAGCTCTGAT
*
73408010 GGGCTTCCGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
1 GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
* *
73408049 GGGCTTATGTTTAGCACTTGTGTACTTCAGTTAGCCTTC
1 GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
* * *
73408088 GGGCTTCTGTTTAGCACTTATGTGCTTCAGCTAGACTTC
1 GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
73408127 GGGCTTC
1 GGGCTTC
73408134 AGATCACGAT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.13, C:0.23, G:0.25, T:0.39
Consensus pattern (39 bp):
GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
Found at i:73414287 original size:22 final size:22
Alignment explanation
Indices: 73414259--73414300 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
73414249 ATTGAGAATG
73414259 AATTGATTC-TTTATTATTTTTT
1 AATTGATTCGTTT-TTATTTTTT
73414281 AATTGATTCGTTTTTATTTT
1 AATTGATTCGTTTTTATTTT
73414301 ATTTTATGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (22 bp):
AATTGATTCGTTTTTATTTTTT
Found at i:73415108 original size:17 final size:17
Alignment explanation
Indices: 73415082--73415114 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73415072 TTATTATAAT
*
73415082 TGTGTGTATATATTATG
1 TGTGTATATATATTATG
73415099 TGTGTATATATATTAT
1 TGTGTATATATATTAT
73415115 ATGCATATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
TGTGTATATATATTATG
Found at i:73418612 original size:46 final size:46
Alignment explanation
Indices: 73418549--73418869 Score: 466
Period size: 46 Copynumber: 7.0 Consensus size: 46
73418539 TTCGACATGA
* * * * * *
73418549 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
73418595 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCTCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-ATCAGGT
* *
73418642 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
73418688 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
73418734 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
73418780 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
73418826 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
73418870 AGAGCACACT
Statistics
Matches: 258, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 4 0.02
46 209 0.81
47 45 0.17
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:73421020 original size:11 final size:11
Alignment explanation
Indices: 73421004--73421055 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
73420994 TATACTAAAT
73421004 AAATAATAATA
1 AAATAATAATA
*
73421015 AAATAAT-ATT
1 AAATAATAATA
* *
73421025 AAATATCTCATA
1 AAATA-ATAATA
*
73421037 AAATATTAATA
1 AAATAATAATA
73421048 AAATAATA
1 AAATAATA
73421056 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:73422752 original size:21 final size:21
Alignment explanation
Indices: 73422723--73422770 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
73422713 TGGGGAGACT
*
73422723 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
73422744 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
73422765 ACTCCA
1 ACTCCA
73422771 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:73423000 original size:25 final size:26
Alignment explanation
Indices: 73422963--73423015 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
73422953 TCAAACATGC
73422963 ATTTAGGTCAATTTAACC-CTAGGGGT
1 ATTTAGGTCAATTT-ACCACTAGGGGT
*
73422989 ATTTCGGT-AATTTACCTACTAGGGGT
1 ATTTAGGTCAATTTACC-ACTAGGGGT
73423015 A
1 A
73423016 AAATTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (26 bp):
ATTTAGGTCAATTTACCACTAGGGGT
Found at i:73424525 original size:26 final size:26
Alignment explanation
Indices: 73424494--73424600 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
73424484 TGAAATTCCC
*
73424494 ATCATGCAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
73424520 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
73424546 ATCATGGAA-TTTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
73424571 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
73424597 ATCA
1 ATCA
73424601 ATTTGTATCA
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
25 23 0.32
26 50 0.68
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:73429510 original size:12 final size:12
Alignment explanation
Indices: 73429493--73429517 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73429483 GCCTCGACCA
73429493 CGACCACGGCCT
1 CGACCACGGCCT
73429505 CGACCACGGCCT
1 CGACCACGGCCT
73429517 C
1 C
73429518 TTCCCCGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.52, G:0.24, T:0.08
Consensus pattern (12 bp):
CGACCACGGCCT
Found at i:73432684 original size:26 final size:26
Alignment explanation
Indices: 73432653--73432760 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
73432643 TGAAATTCCC
73432653 ATCATGGAACATTTACCTATA-CCATT
1 ATCATGGAACATTTACCTA-ACCCATT
73432679 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73432705 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
73432731 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73432757 ATCA
1 ATCA
73432761 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 1 0.01
26 74 0.99
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73434503 original size:13 final size:13
Alignment explanation
Indices: 73434485--73434509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73434475 TCAATTATGC
73434485 TAATTTCATTCAA
1 TAATTTCATTCAA
73434498 TAATTTCATTCA
1 TAATTTCATTCA
73434510 TACAAATACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTTCATTCAA
Found at i:73434640 original size:20 final size:20
Alignment explanation
Indices: 73434615--73434656 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
73434605 TATCGGTAAG
73434615 AGCATGGCTAACTCTGTCAT
1 AGCATGGCTAACTCTGTCAT
73434635 AGCATGGCTAACTCTGTCAT
1 AGCATGGCTAACTCTGTCAT
73434655 AG
1 AG
73434657 TCTGGTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (20 bp):
AGCATGGCTAACTCTGTCAT
Found at i:73446084 original size:18 final size:16
Alignment explanation
Indices: 73446061--73446096 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
73446051 GTTTAAAATT
73446061 TTTAATTAATTAAATTTA
1 TTTAATTAA--AAATTTA
73446079 TTTAATTAAAAATTTA
1 TTTAATTAAAAATTTA
73446095 TT
1 TT
73446097 CTCATCCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAATTAAAAATTTA
Found at i:73447161 original size:19 final size:18
Alignment explanation
Indices: 73447137--73447185 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
73447127 TTTTATTATC
*
73447137 TTTAAATTATTGTTGAAAT
1 TTTAAATTATT-TTAAAAT
73447156 TTTAAATTGA-TTTAAAAT
1 TTTAAATT-ATTTTAAAAT
*
73447174 TTTAAAATATTT
1 TTTAAATTATTT
73447186 AAAGTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.04
18 15 0.58
19 9 0.35
20 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTAAATTATTTTAAAAT
Found at i:73447187 original size:17 final size:18
Alignment explanation
Indices: 73447152--73447188 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73447142 ATTATTGTTG
*
73447152 AAATTTTAAATTGATTTA
1 AAATTTTAAAATGATTTA
73447170 AAATTTTAAAAT-ATTTA
1 AAATTTTAAAATGATTTA
73447187 AA
1 AA
73447189 GTGAATCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
AAATTTTAAAATGATTTA
Found at i:73448333 original size:15 final size:15
Alignment explanation
Indices: 73448313--73448346 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
73448303 AAAATAAAAT
73448313 AATTTATTATATTTA
1 AATTTATTATATTTA
* *
73448328 AATTTATTTTATTTG
1 AATTTATTATATTTA
73448343 AATT
1 AATT
73448347 AAAAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
AATTTATTATATTTA
Found at i:73448830 original size:22 final size:22
Alignment explanation
Indices: 73448804--73448854 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
73448794 AAATGGTAAC
* *
73448804 AAAATAGGAAGAAAACAATAAG
1 AAAATAGCAAGAAAACAACAAG
**
73448826 AAAATAGCATTAAAACAACAAG
1 AAAATAGCAAGAAAACAACAAG
73448848 AAAATAG
1 AAAATAG
73448855 TAGTTCCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.67, C:0.08, G:0.14, T:0.12
Consensus pattern (22 bp):
AAAATAGCAAGAAAACAACAAG
Found at i:73449762 original size:25 final size:23
Alignment explanation
Indices: 73449710--73449764 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
73449700 TATAAATAGT
73449710 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
73449733 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
73449758 AATAGTG
1 AATAGTG
73449765 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:73449862 original size:25 final size:25
Alignment explanation
Indices: 73449823--73449971 Score: 92
Period size: 25 Copynumber: 5.9 Consensus size: 25
73449813 AAAATAGATA
*
73449823 TAAAAAATATGTACATAATATAGTG
1 TAAAAAATATATACATAATATAGTG
* *
73449848 TAAAAAATACATACATAATATAAT-
1 TAAAAAATATATACATAATATAGTG
*
73449872 T--AAAATATATACATAAGATAACATGTAG
1 TAAAAAATATATACAT-A-AT-ATA-GT-G
* * *
73449900 AAAAAAAATATATAAATAATATAGTA
1 -TAAAAAATATATACATAATATAGTG
* * *
73449926 TTAAAGATATATACATAAAATA--G
1 TAAAAAATATATACATAATATAGTG
* * *
73449949 TATAATATATATACGTAATATAG
1 TAAAAAATATATACATAATATAG
73449972 AATTTAGAAT
Statistics
Matches: 93, Mismatches: 21, Indels: 21
0.69 0.16 0.16
Matches are distributed among these distances:
22 12 0.13
23 18 0.19
24 3 0.03
25 40 0.43
26 1 0.01
27 2 0.02
28 2 0.02
29 2 0.02
30 1 0.01
31 12 0.13
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (25 bp):
TAAAAAATATATACATAATATAGTG
Found at i:73449903 original size:27 final size:28
Alignment explanation
Indices: 73449873--73449944 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
73449863 TAATATAATT
73449873 AAAATATATACATAAGATAACAT-GTA-G
1 AAAATATATACATAA-ATAACATAGTATG
* * * * *
73449900 AAAAAAAATATATAAATAATATAGTATT
1 AAAATATATACATAAATAACATAGTATG
73449928 AAAGATATATACATAAA
1 AAA-ATATATACATAAA
73449945 ATAGTATAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
26 6 0.18
27 15 0.44
28 3 0.09
29 10 0.29
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAATATATACATAAATAACATAGTATG
Found at i:73450633 original size:30 final size:30
Alignment explanation
Indices: 73450514--73450632 Score: 195
Period size: 30 Copynumber: 4.0 Consensus size: 30
73450504 AGGTACAAGT
*
73450514 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
73450544 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
73450574 GGTAGTGGAGCAAGTGTGGTTAGTGGAGTTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAG-TA
73450605 -GTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGT
73450633 TGGAGGTAGC
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
29 1 0.01
30 80 0.96
31 2 0.02
ACGTcount: A:0.21, C:0.06, G:0.48, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:73451193 original size:21 final size:21
Alignment explanation
Indices: 73451163--73451207 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
73451153 TCTGATATCA
73451163 TCAATCAGCTCCACTGCAACT
1 TCAATCAGCTCCACTGCAACT
* * *
73451184 TCAATTAGCTTCACTGTAACT
1 TCAATCAGCTCCACTGCAACT
73451205 TCA
1 TCA
73451208 GGGATATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (21 bp):
TCAATCAGCTCCACTGCAACT
Found at i:73451428 original size:87 final size:87
Alignment explanation
Indices: 73451277--73451482 Score: 227
Period size: 87 Copynumber: 2.4 Consensus size: 87
73451267 TCCTGAGCTT
* * *
73451277 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
*
73451342 GCTCAGCACGTGAGCCAAGGCTC
65 GCTCAGCACGTGACCCAAGGCTC
* **
73451365 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAAC-AAA-ATTTGTAAAACAGATTTTGAAAAT
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACA-TT-AAAAACAGAAATTGAAAAT
* * * * *
73451428 ATCTCGGTATGTGACCCGAGGCTC
64 AGCTCAGCACGTGACCCAAGGCTC
* ** *
73451452 AACTCACCTCTCATAATATGAGTTAATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
73451483 GCAAAGCATA
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
85 1 0.01
86 5 0.05
87 70 0.70
88 24 0.24
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (87 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATAG
CTCAGCACGTGACCCAAGGCTC
Found at i:73451620 original size:102 final size:102
Alignment explanation
Indices: 73451420--73451608 Score: 263
Period size: 102 Copynumber: 1.8 Consensus size: 102
73451410 AAAACAGATT
* * * *
73451420 TTGAAAATATCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCATAATATGAGTTAATTTTTGC
1 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCACAATATAAGTTAATTTTTGC
73451485 AAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
66 AAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
* * * * *
73451522 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
1 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCACAATATAAGTT-A-ATTTTT
73451587 GACAAA-CATAAATTGAAAAAAA
64 G-CAAAGCATAAATTGAAAAAAA
73451609 GAAATTGAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
102 48 0.64
103 1 0.01
104 22 0.29
105 4 0.05
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (102 bp):
TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCACAATATAAGTTAATTTTTGC
AAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
Found at i:73451656 original size:89 final size:90
Alignment explanation
Indices: 73451520--73451694 Score: 253
Period size: 89 Copynumber: 1.9 Consensus size: 90
73451510 AATAAAAATC
* *
73451520 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
* * *
73451585 TTGACAAACATAAATTGAAAAAAAGA
65 TGGAAAAACAGAAATTGAAAAAAAGA
* * *
73451611 AATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
*
73451675 GGAAAAACAGAATTTGAAAA
66 GGAAAAACAGAAATTGAAAA
73451695 TACCTCAGCG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
89 55 0.73
91 20 0.27
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (90 bp):
AATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
GGAAAAACAGAAATTGAAAAAAAGA
Found at i:73451860 original size:166 final size:157
Alignment explanation
Indices: 73451520--73452645 Score: 626
Period size: 166 Copynumber: 7.0 Consensus size: 157
73451510 AATAAAAATC
** * *
73451520 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 AATTGAAAATACCTCAACGTGTGATC-GAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTT
* * * * *
73451585 TTGACAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCAC
65 TTGA-AAACAAAAATTG--AAAAAGAAA-TGAAAA-ACCTCAGC--GTCTTGAGGTTCAACTCAC
*
73451650 CTCTCGCAATATGAGTTGATTTTTTGGAAAAACAGA
123 CTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGA
* * * *
73451686 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGA-TTTT
1 AATTGAAAATACCTCAACGTGTGA-TCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTT
*
73451750 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCT
65 TTGAAA-ACAAAAATTGAA-AA-AGAAAT-GAAAA-ACCTCAGCGTCTTGAGGTTCAACTCACCT
*
73451815 CTCGCAATATGAGCTGATTTTTTTTTTGAAAGACAGA
125 CTCGCAATATGAGTTGA---TTTTTTTGAAA-ACAGA
* * * *
73451852 AATTGAAAATACCTCAACGTGT-CTTGAGGTTCAACTCACCTA-TCGCAATATGAGTTTATTTTT
1 AATTGAAAATACCTCAACGTGTGATCGAGGCTCAACTCACC-ACTCGCAATATGAGTTGATTTTT
*
73451915 TTGAAAAACAAAAATT----AA-AAAT-----ACCTCAACGTGTCTTGAGGTTCAACTCACCTCT
65 TTG-AAAACAAAAATTGAAAAAGAAATGAAAAACCTC-A-GCGTCTTGAGGTTCAACTCACCTCT
73451970 CGCAATATGAGTTGATTTTTTT-AAAACAGA
127 CGCAATATGAGTTGATTTTTTTGAAAACAGA
* * *
73452000 AATTGAAAATACCTCAACGTGT-CTTGAGGCTC-ACT---CTCTCGCAATATGAGTTGA--TTTT
1 AATTGAAAATACCTCAACGTGTGATCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
* * * * *
73452058 TGACAAAC-AAAATT------GAAAT----TACCTCAACGTGTCCTGAGGCTCAACTCACCTATC
66 TGA-AAACAAAAATTGAAAAAGAAATGAAAAACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTC
73452112 GCAATATGAGTTGATTTTTTTGAAAAACAGA
128 GCAATATGAGTTGATTTTTTTG-AAAACAGA
* * * * *
73452143 AATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--GTTT
1 AATTGAAAATACCTCAACGTGTGATCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
* * * * *
73452205 TGACAAACAAAAATT------GAAAT----TACCTCAGTGTGTCCTGAGGCTCAACTCACTTCTC
66 TGA-AAACAAAAATTGAAAAAGAAATGAAAAACCTCA--GCGTCTTGAGGTTCAACTCACCTCTC
* *
73452260 GCAATATGAATTGATTTTTTTAGAAACATAAATTAAAAAAAACGAA
128 GCAATATGAGTTGATTTTTTT-G-------------AAAACA-G-A
* ** *
73452306 AATTGAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAA
1 AATTGAAAATACCTCAACGTGTGATCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTT---
* ** * * * * *
73452370 AAGCAGAATTTGTAAGGCAAAAATTGAAAAACAGAATTGAAAATATCTCAGTGTGCCCTGAGGCT
63 -------TTTTG-AAAACAAAAATTG-AAAA-AGAAATGAAAA-ACCTCAGCGT--CTTGAGGTT
73452435 CAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGA
115 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGA
* ** *** * *
73452477 AATTAAAAATACCTCGGCGTG-CCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA--TTTT
1 AATTGAAAATACCTCAACGTGTGATCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
* * **
73452539 TGAAAAGCATAAATTGAAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACT
66 TGAAAA-CAAAAATTG--AAAAA--GAAA-TGAAAA-ACCTCAGC--GT--CTTGAGGTTCAACT
*
73452604 CACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGA
120 CACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGA
73452643 AAT
1 AAT
73452646 AAAAACATCA
Statistics
Matches: 815, Mismatches: 64, Indels: 162
0.78 0.06 0.16
Matches are distributed among these distances:
140 4 0.00
141 59 0.07
142 10 0.01
143 40 0.05
144 19 0.02
147 33 0.04
148 97 0.12
149 4 0.00
150 7 0.01
151 5 0.01
152 1 0.00
153 38 0.05
158 6 0.01
159 14 0.02
160 6 0.01
161 9 0.01
162 14 0.02
163 90 0.11
164 73 0.09
165 56 0.07
166 99 0.12
167 2 0.00
169 1 0.00
170 2 0.00
171 52 0.06
172 1 0.00
173 6 0.01
175 13 0.02
176 1 0.00
183 4 0.00
185 1 0.00
186 9 0.01
188 39 0.05
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (157 bp):
AATTGAAAATACCTCAACGTGTGATCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
TGAAAACAAAAATTGAAAAAGAAATGAAAAACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTGAAAACAGA
Found at i:73451956 original size:75 final size:75
Alignment explanation
Indices: 73451764--73452298 Score: 657
Period size: 75 Copynumber: 7.3 Consensus size: 75
73451754 AACACAGAAA
* * * * * *
73451764 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73451827 GCTGATTTTTTTT
66 GTTGA---TTTTT
* * * *
73451840 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73451905 GTTTATTTTT
66 GTTGATTTTT
* *
73451915 TTGAAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73451980 GTTGATTTTT
66 GTTGATTTTT
*
73451990 TT--AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC-ACT---CTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73452049 GTTGA--TTT
66 GTTGATTTTT
* * * *
73452057 TTGACAAAC-AAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73452121 GTTGATTTTT
66 GTTGATTTTT
* *
73452131 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73452196 GTTGA--GTT
66 GTTGATTTTT
* * ** * *
73452204 TTGACAAACAAAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73452269 ATTGATTTTT
66 GTTGATTTTT
* * *
73452279 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAAAAATTGAAAA
73452299 AAACGAAAAT
Statistics
Matches: 404, Mismatches: 42, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
67 5 0.01
68 31 0.08
69 26 0.06
72 21 0.05
73 100 0.25
74 25 0.06
75 136 0.34
76 23 0.06
77 1 0.00
78 36 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:73452193 original size:216 final size:220
Alignment explanation
Indices: 73451837--73452278 Score: 671
Period size: 216 Copynumber: 2.0 Consensus size: 220
73451827 GCTGATTTTT
* *
73451837 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATA
1 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTATCGCAATA
* *
73451902 TGAGTTTATTTTTTTGAAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGTTCAACTCACC
66 TGAGTTGATTTTTTTGAAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
* * * *
73451967 TCTCGCAATATGAGTTGATTTTTTTA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
131 TCTCGCAATATGAGTTGA-GTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCT
*
73452031 C-ACT-C-TCTCGCAATATGAGTTGA
195 CAACTACTTCTCGCAATATGAATTGA
*
73452054 TTTTTGACAA-ACA-AAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTATCGCAAT
1 TTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTATCGCAAT
* *
73452117 ATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
65 ATGAGTTGATTTTTTTGAAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
* * **
73452182 CTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGTGTGTCCTGAGGCT
130 CTCTCGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCT
73452247 CAACTCACTTCTCGCAATATGAATTGA
195 CAACT-ACTTCTCGCAATATGAATTGA
73452274 TTTTT
1 TTTTT
73452279 TTAGAAACAT
Statistics
Matches: 203, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
215 5 0.02
216 160 0.79
217 13 0.06
218 2 0.01
219 1 0.00
220 22 0.11
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (220 bp):
TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTATCGCAATA
TGAGTTGATTTTTTTGAAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTC
AACTACTTCTCGCAATATGAATTGA
Found at i:73452515 original size:73 final size:73
Alignment explanation
Indices: 73452393--73452559 Score: 246
Period size: 73 Copynumber: 2.3 Consensus size: 73
73452383 AAGGCAAAAA
* * * *
73452393 TTGAAAAACAG-AATTGAAAATATCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
73452457 GTTGATTT
66 GTTGATTT
* *
73452465 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
73452530 GTTGATTT
66 GTTGATTT
* *
73452538 TTGAAAAGCATAAATTGAAAAA
1 TTGAAAAACAGAAATT-AAAAA
73452560 AACGGAAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
72 11 0.13
73 69 0.81
74 5 0.06
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:73461833 original size:110 final size:110
Alignment explanation
Indices: 73461640--73461859 Score: 422
Period size: 110 Copynumber: 2.0 Consensus size: 110
73461630 TGTGACTATT
73461640 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
*
73461705 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAGTCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
*
73461750 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
73461815 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
73461860 CCTATCCACA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.24
Consensus pattern (110 bp):
ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
Found at i:73462248 original size:39 final size:39
Alignment explanation
Indices: 73462194--73462440 Score: 354
Period size: 39 Copynumber: 6.3 Consensus size: 39
73462184 TAATGGAGAA
* *
73462194 TTATACCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
73462233 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
73462272 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
73462311 TTATATCCGGGTTAAGCCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
73462350 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * *
73462389 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
73462428 TTATATCCGGGCT
1 TTATATCCGGGCT
73462441 TAAAGTCTCG
Statistics
Matches: 194, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 184 0.95
40 10 0.05
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:73468581 original size:76 final size:73
Alignment explanation
Indices: 73468501--73468669 Score: 167
Period size: 76 Copynumber: 2.2 Consensus size: 73
73468491 ATGTTAAGAT
* * * * *
73468501 ATATATAATATATACATATGTATAAAATAGATATAAAAAAATATGTACATAATATAGTGTAAAAA
1 ATATATAATATATACATAAG-ATAAAAT-G-TAGAAAAAAA-ATATAAATAATATAGTATAAAAA
73468566 ATACATACATAA
62 ATACATACATAA
* * * *
73468578 TATAATTAAAATATATACATAAGATAACATGTAGAAAAAAAATATAAATAATATAGTATTAAAGA
1 -AT-A-TATAATATATACATAAGATAAAATGTAGAAAAAAAATATAAATAATATAGTATAAAAAA
*
73468643 TATATACATAAA
63 TACATACAT-AA
73468655 ATAGTATAATATATA
1 ATA-TATAATATATA
73468670 TACGTAATAT
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
75 11 0.14
76 29 0.38
77 11 0.14
78 3 0.04
79 7 0.09
80 15 0.20
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (73 bp):
ATATATAATATATACATAAGATAAAATGTAGAAAAAAAATATAAATAATATAGTATAAAAAATAC
ATACATAA
Found at i:73468647 original size:25 final size:23
Alignment explanation
Indices: 73468618--73468746 Score: 102
Period size: 23 Copynumber: 5.6 Consensus size: 23
73468608 GTAGAAAAAA
*
73468618 AATATAAATAATATAGTATTAAAG
1 AATATACATAATATAGTATT-AAG
* *
73468642 ATATATACATAAAATAGTA-TAAT
1 A-ATATACATAATATAGTATTAAG
* * *
73468665 ATATATACGTAATATAGAATTTAG
1 A-ATATACATAATATAGTATTAAG
* * *
73468689 AATATACCTAATATATTA-AAAG
1 AATATACATAATATAGTATTAAG
* *
73468711 AATATATATAATATAATATTAAG
1 AATATACATAATATAGTATTAAG
73468734 AAATATA-ATAATA
1 -AATATACATAATA
73468747 ATAAAAAAAG
Statistics
Matches: 84, Mismatches: 17, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
22 17 0.20
23 41 0.49
24 11 0.13
25 15 0.18
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (23 bp):
AATATACATAATATAGTATTAAG
Found at i:73468653 original size:29 final size:28
Alignment explanation
Indices: 73468549--73468654 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 28
73468539 AAATATGTAC
* *
73468549 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
73468574 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* * * *
73468600 GATAACAT-GTA-GAAAA-A-AAATATAA
1 -ATAATATAGTATTAAAATATATACATAA
73468625 ATAATATAGTATTAAAGATATATACATAA
1 ATAATATAGTATTAAA-ATATATACATAA
73468654 A
1 A
73468655 ATAGTATAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 18
0.68 0.11 0.20
Matches are distributed among these distances:
24 11 0.18
25 18 0.30
26 11 0.18
27 11 0.18
28 2 0.03
29 7 0.12
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:73468757 original size:23 final size:24
Alignment explanation
Indices: 73468697--73468757 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 24
73468687 AGAATATACC
*
73468697 TAATAT-ATTAAAAG-AATATATA
1 TAATATAATAAAAAGAAATATATA
**
73468719 TAATATAATATTAAGAAATATA-A
1 TAATATAATAAAAAGAAATATATA
73468742 TAATAATAA-AAAAAGA
1 TAAT-ATAATAAAAAGA
73468758 GAGGGAGAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 6 0.19
23 15 0.48
24 10 0.32
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (24 bp):
TAATATAATAAAAAGAAATATATA
Done.