Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 215 of 311
Found at i:73682764 original size:51 final size:52
Alignment explanation
Indices: 73682643--73682783 Score: 194
Period size: 51 Copynumber: 2.7 Consensus size: 52
73682633 CTCTTTTATT
* * **
73682643 AAGTCTCAAAGTGCCCTTTGTGGGTTTTCACTTTGGCCCTTTTCATTTTTATT
1 AAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTTT-ATTTTTAGA
* *
73682696 TAGTCTCAAAGCGCCCTTTGCGAGTTTTCACTTTGGCCCTTTT-TTTTTAGA
1 AAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTTTATTTTTAGA
* *
73682747 AAGTCTCAAAACGCCCTTTGCGGGTTTTCACATTGGC
1 AAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGC
73682784 TTCCTTCCTT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 39 0.50
53 39 0.50
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.41
Consensus pattern (52 bp):
AAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTTTATTTTTAGA
Found at i:73691052 original size:35 final size:35
Alignment explanation
Indices: 73691013--73691178 Score: 154
Period size: 35 Copynumber: 4.6 Consensus size: 35
73691003 CATGGCAAAG
73691013 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* * *
73691048 TGTGAAATATAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* *
73691083 TGTGAAATGTCGGTATGGTATTATCAAATCCATTCTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * * *
73691123 TAAGAAATGTAAGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
**
73691158 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
73691179 TTCAATGAGG
Statistics
Matches: 105, Mismatches: 20, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
34 1 0.01
35 74 0.70
37 2 0.02
38 3 0.03
40 25 0.24
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:73691139 original size:75 final size:75
Alignment explanation
Indices: 73691013--73691183 Score: 185
Period size: 75 Copynumber: 2.4 Consensus size: 75
73691003 CATGGCAAAG
** * *
73691013 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATATAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATATAAGTATGGCATT-TC
*
73691072 CCATACTGAGC
65 CCATACCGAGC
* * *
73691083 TGTGAAATGTCGGTATGGTATTATCAAATCCATTCTGAGTTAAGAAATGTAAGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATATAAGTATGGCATTTCC
*
73691148 CATACCGAGT
66 CATACCGAGC
**
73691158 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
73691184 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
70 17 0.20
73 4 0.05
74 5 0.06
75 57 0.69
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATATAAGTATGGCATTTCC
CATACCGAGC
Found at i:73692630 original size:19 final size:19
Alignment explanation
Indices: 73692606--73692645 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
73692596 TATAGCCTTT
*
73692606 AATGCATATG-ATGTAATGC
1 AATGCAAATGCATG-AATGC
73692625 AATGCAAATGCATGAATGC
1 AATGCAAATGCATGAATGC
73692644 AA
1 AA
73692646 AGGAGGCGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAAATGCATGAATGC
Found at i:73694547 original size:16 final size:16
Alignment explanation
Indices: 73694526--73694558 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
73694516 ACTGTTCCAA
73694526 TCTTTGGTCCATTTCT
1 TCTTTGGTCCATTTCT
73694542 TCTTTGGTCCATTTCT
1 TCTTTGGTCCATTTCT
73694558 T
1 T
73694559 TGGTTTTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.24, G:0.12, T:0.58
Consensus pattern (16 bp):
TCTTTGGTCCATTTCT
Found at i:73694557 original size:13 final size:15
Alignment explanation
Indices: 73694526--73694562 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
73694516 ACTGTTCCAA
73694526 TCTTTGGTCCATTTCT
1 TCTTTGGTCCA-TTCT
73694542 TCTTTGGTCCA-T-T
1 TCTTTGGTCCATTCT
73694555 TCTTTGGT
1 TCTTTGGT
73694563 TTTGGCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.43
14 1 0.05
16 11 0.52
ACGTcount: A:0.05, C:0.22, G:0.16, T:0.57
Consensus pattern (15 bp):
TCTTTGGTCCATTCT
Found at i:73697065 original size:33 final size:33
Alignment explanation
Indices: 73697028--73697174 Score: 118
Period size: 33 Copynumber: 4.5 Consensus size: 33
73697018 ATGGATGTAA
* * *
73697028 CCTTTTCCAGTCGTACACTCGAGGTGTAAAT-T
1 CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
* *
73697060 CCCTTTTCAAGTGGTACACTCAAAGTGTACATAT
1 -CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
* * ** *
73697094 CCTTTTCAAGTTGTACACACAAAGTGTACTTAG
1 CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
* * * * * *
73697127 CCTTTTCAAATTGTATACACAAAGTGTACATAA
1 CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
*
73697160 CCTTGTCAAGT-GTAC
1 CCTTTTCAAGTCGTAC
73697175 CATTTAAGTA
Statistics
Matches: 97, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
32 3 0.03
33 93 0.96
34 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (33 bp):
CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
Found at i:73697121 original size:66 final size:66
Alignment explanation
Indices: 73697025--73697174 Score: 160
Period size: 66 Copynumber: 2.3 Consensus size: 66
73697015 CCGATGGATG
* * * * * * *
73697025 TAACCTTTTCCAGTCGTACACTCGAGGTGTAAATT-CCCTTTTCAAGTGGTACACTCAAAGTGTA
1 TAACCTTTTCAAGTTGTACACACAAAGTGT-AATTACCCTTTTCAAATGGTACACACAAAGTGTA
73697089 CA
65 CA
* * * * *
73697091 TATCCTTTTCAAGTTGTACACACAAAGTGTACTTAGCCTTTTCAAATTGTATACACAAAGTGTAC
1 TAACCTTTTCAAGTTGTACACACAAAGTGTAATTACCCTTTTCAAATGGTACACACAAAGTGTAC
73697156 A
66 A
*
73697157 TAACCTTGTCAAG-TGTAC
1 TAACCTTTTCAAGTTGTAC
73697175 CATTTAAGTA
Statistics
Matches: 69, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
65 8 0.12
66 61 0.88
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (66 bp):
TAACCTTTTCAAGTTGTACACACAAAGTGTAATTACCCTTTTCAAATGGTACACACAAAGTGTAC
A
Found at i:73704121 original size:24 final size:22
Alignment explanation
Indices: 73704078--73704122 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73704068 TATCAAGCAT
* *
73704078 ATAATATTTATCATATAATACC
1 ATAATATTCATCATAAAATACC
73704100 ATAATATATCATCATCAAAATAC
1 ATAATAT-TCATCAT-AAAATAC
73704123 ACATTACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 6 0.32
24 6 0.32
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (22 bp):
ATAATATTCATCATAAAATACC
Found at i:73704635 original size:33 final size:33
Alignment explanation
Indices: 73704587--73704718 Score: 113
Period size: 33 Copynumber: 4.0 Consensus size: 33
73704577 TTTTCCAATC
* *
73704587 GTACACTCGAGGTGTAAAT-TCCCTTTTCAAGTG
1 GTACACTCAAAGTGTAAATAT-CCTTTTCAAGTG
* *
73704620 GTACACTCAAAGTGTACATATCCTTTTCAAGTT
1 GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
* ** * * *
73704653 GTACACACAAAGTGTACTTAGCCTTTTCAAATT
1 GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
* * * * *
73704686 GTATACACAAAGTGTACATAACCTTGTCAAGTG
1 GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
73704719 TACCATTTAA
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
33 83 0.99
34 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (33 bp):
GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
Found at i:73706412 original size:11 final size:10
Alignment explanation
Indices: 73706396--73706470 Score: 55
Period size: 12 Copynumber: 7.1 Consensus size: 10
73706386 TAATGAGGAC
73706396 AAAAATAAAAT
1 AAAAAT-AAAT
73706407 AAAAATAAAT
1 AAAAATAAAT
73706417 -AAAAT-AAT
1 AAAAATAAAT
**
73706425 AAAAAGGAAT
1 AAAAATAAAT
*
73706435 AATGAATGAAAT
1 AA-AAAT-AAAT
73706447 AACAAATGAAAT
1 AA-AAAT-AAAT
73706459 AATAAATAAAT
1 AA-AAATAAAT
73706470 A
1 A
73706471 CTAGTAAAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
8 3 0.06
9 9 0.17
10 9 0.17
11 13 0.25
12 19 0.36
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.20
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:73706553 original size:3 final size:3
Alignment explanation
Indices: 73706545--73706573 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
73706535 TAAAATGGTT
73706545 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73706574 TGAAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73713546 original size:137 final size:137
Alignment explanation
Indices: 73713384--73713956 Score: 979
Period size: 137 Copynumber: 4.2 Consensus size: 137
73713374 CGGCCAAGAT
73713384 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
73713449 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
73713514 GAATGTG
131 GAATGTG
73713521 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
*
73713586 GGATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
73713651 GAATGTG
131 GAATGTG
73713658 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
73713723 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
73713788 GAATGTG
131 GAATGTG
73713795 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G----TATGTGAT
* * * * * * *
73713860 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAA
60 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
* *
73713923 CGTGATGGATGTG
125 TGTGATGAATGTG
*
73713936 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
73713957 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
137 322 0.77
139 1 0.00
141 54 0.13
143 41 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (137 bp):
AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTG
Found at i:73713554 original size:47 final size:47
Alignment explanation
Indices: 73713384--73713956 Score: 795
Period size: 47 Copynumber: 12.4 Consensus size: 47
73713374 CGGCCAAGAT
*
73713384 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
73713431 AAA--G----TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
73713472 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
73713521 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
** *
73713568 AAA--G----TATGTGATAAGGCCGGATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
73713609 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
73713658 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
73713705 AAA--G----TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
73713746 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
73713795 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
73713842 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * * * * *
73713889 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
73713936 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
73713957 TCCCGAAGGG
Statistics
Matches: 471, Mismatches: 31, Indels: 48
0.86 0.06 0.09
Matches are distributed among these distances:
41 110 0.23
43 3 0.01
45 3 0.01
47 233 0.49
49 122 0.26
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:73722850 original size:21 final size:20
Alignment explanation
Indices: 73722826--73722873 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
73722816 AATTATTCTT
73722826 AAAAAAAAACTTAAAATTT-TG
1 AAAAAAAAA--TAAAATTTGTG
*
73722847 AAAATAAAAATAAAATTTGTT
1 AAAA-AAAAATAAAATTTGTG
73722868 AAAAAA
1 AAAAAA
73722874 TATAAGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 10 0.42
21 9 0.38
22 5 0.21
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAAAAAAATAAAATTTGTG
Found at i:73723053 original size:18 final size:18
Alignment explanation
Indices: 73723027--73723062 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73723017 ATATAAAATA
*
73723027 TAAAAATTAAAAATATTT
1 TAAAAATTAAAAAAATTT
*
73723045 TAAACATTAAAAAAATTT
1 TAAAAATTAAAAAAATTT
73723063 AACCGTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAAATTAAAAAAATTT
Found at i:73723636 original size:45 final size:45
Alignment explanation
Indices: 73723585--73723672 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
73723575 TTTTGCTACA
73723585 CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGACT
1 CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGACT
*
73723630 CATGAGAACTCTGCCACCTTGTTACCTTTTTGTAGTACTAGGA
1 CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGA
73723673 TTGTTCCACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (45 bp):
CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGACT
Found at i:73729473 original size:8 final size:8
Alignment explanation
Indices: 73729460--73729497 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
73729450 GCTTTAACTA
73729460 AAATTTTT
1 AAATTTTT
73729468 AAATTTTTT
1 AAA-TTTTT
73729477 AAA-TTTT
1 AAATTTTT
*
73729484 AAATTTTA
1 AAATTTTT
73729492 AAATTT
1 AAATTT
73729498 ATAATGTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
7 7 0.26
8 12 0.44
9 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AAATTTTT
Found at i:73731631 original size:34 final size:34
Alignment explanation
Indices: 73731588--73731654 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
73731578 TTGTAACATA
73731588 AACTCGTGATTTTTTATAACATAAATTATTAATC
1 AACTCGTGATTTTTTATAACATAAATTATTAATC
73731622 AACTCGTGATTTTTTATAACATAAATTATTAAT
1 AACTCGTGATTTTTTATAACATAAATTATTAAT
73731655 TAAAATATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (34 bp):
AACTCGTGATTTTTTATAACATAAATTATTAATC
Found at i:73743943 original size:161 final size:156
Alignment explanation
Indices: 73743682--73743995 Score: 403
Period size: 161 Copynumber: 2.0 Consensus size: 156
73743672 TATACTATCC
* *
73743682 TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAATTGAGGGAAAAATCACAACCCCAAATTAGAT
1 TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAACTGAGGAAAAAATCACAACCCCAAATTAGAT
* *
73743747 TTAAATATTTTGAAACCTGTCAGTAAAAAAGTGTTTACAATATACATGTGATCCAGTTGTATTAG
66 TTAAATATTTTGAAACCTGACAATAAAAAAGTGTTTA-AATATACATGTGATCCAGTTGTATTAG
** *
73743812 GTTGAATTCATGGTCTTCTATTGTTCT
130 GTTGAAGGCATGATCTTCTATTGTTCT
* * * * *
73743839 TTTTTTGGCTTCTAGTTCTTGTACTTGTGCCAGACTGAGACAATAAAAAATCATAACCCCAAATT
1 TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAACTGAG----GAAAAAATCACAACCCCAAATT
* * * * * * *
73743904 AGATTTAAATATTTTGGAACTTGACAATGAAAAAGTGTTTATATATACCTGTTATCCAGTTGTGT
62 AGATTTAAATATTTTGAAACCTGACAATAAAAAAGTGTTTAAATATACATGTGATCCAGTTGTAT
*
73743969 TAGGTTGAAGGCATGATCTTCTGTTGT
127 TAGGTTGAAGGCATGATCTTCTATTGT
73743996 GACCCTCACC
Statistics
Matches: 133, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 35 0.26
160 43 0.32
161 55 0.41
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (156 bp):
TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAACTGAGGAAAAAATCACAACCCCAAATTAGAT
TTAAATATTTTGAAACCTGACAATAAAAAAGTGTTTAAATATACATGTGATCCAGTTGTATTAGG
TTGAAGGCATGATCTTCTATTGTTCT
Found at i:73746266 original size:18 final size:18
Alignment explanation
Indices: 73746243--73746285 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
73746233 AACAATCTAA
73746243 ACCTTCAACACCCTCACC
1 ACCTTCAACACCCTCACC
* *
73746261 ACCTTCACCACCCTTACC
1 ACCTTCAACACCCTCACC
73746279 ACCTTCA
1 ACCTTCA
73746286 TTGCCAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (18 bp):
ACCTTCAACACCCTCACC
Found at i:73746358 original size:57 final size:57
Alignment explanation
Indices: 73746261--73746400 Score: 183
Period size: 57 Copynumber: 2.5 Consensus size: 57
73746251 CACCCTCACC
* * * *
73746261 ACCTTCACCACCCTTACCACCTTCATTGCCAATAATATCAACACCCTCCCCACCTAA
1 ACCTTCAACACCCTTACCACCTTTACTGCCAATAACATCAACACCCTCCCCACCTAA
* * * **
73746318 ACCTTCAACACCCTCACCACCTTTACTGCC-ATCAACATCAACACCCTCTCTATTTAA
1 ACCTTCAACACCCTTACCACCTTTACTGCCAAT-AACATCAACACCCTCCCCACCTAA
73746375 ACCTTCAACACCCTTACCACCTTTAC
1 ACCTTCAACACCCTTACCACCTTTAC
73746401 CACCCTTAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 2 0.03
57 70 0.97
ACGTcount: A:0.29, C:0.44, G:0.01, T:0.25
Consensus pattern (57 bp):
ACCTTCAACACCCTTACCACCTTTACTGCCAATAACATCAACACCCTCCCCACCTAA
Found at i:73746420 original size:57 final size:57
Alignment explanation
Indices: 73746297--73746422 Score: 153
Period size: 57 Copynumber: 2.2 Consensus size: 57
73746287 TGCCAATAAT
* * ** **
73746297 ATCAACACCCTCCCCACCTAAACCTTCAACACCCTCACCACCTTTACTGCCATCAAC
1 ATCAACACCCTCTCTATTTAAACCTTCAACACCCTCACCACCTTTACCACCATCAAC
* * *
73746354 ATCAACACCCTCTCTATTTAAACCTTCAACACCCTTACCACCTTTACCACCCTTAAC
1 ATCAACACCCTCTCTATTTAAACCTTCAACACCCTCACCACCTTTACCACCATCAAC
* *
73746411 CTCACCACCCTC
1 ATCAACACCCTC
73746423 ACCACCTTTA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.29, C:0.48, G:0.01, T:0.23
Consensus pattern (57 bp):
ATCAACACCCTCTCTATTTAAACCTTCAACACCCTCACCACCTTTACCACCATCAAC
Found at i:73746446 original size:24 final size:24
Alignment explanation
Indices: 73746419--73746500 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
73746409 ACCTCACCAC
*
73746419 CCTCACCACCTTTACTGCTAACAA
1 CCTCAACACCTTTACTGCTAACAA
* **
73746443 CCTCAACACCTTTCCCACCT-A-AA
1 CCTCAACACCTTT-ACTGCTAACAA
* * *
73746466 CCTTCACCACCTTCACTGCTAGCAA
1 CC-TCAACACCTTTACTGCTAACAA
73746491 CCTCAACACC
1 CCTCAACACC
73746501 CTCTCCATTT
Statistics
Matches: 43, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
23 7 0.16
24 29 0.67
25 7 0.16
ACGTcount: A:0.28, C:0.46, G:0.04, T:0.22
Consensus pattern (24 bp):
CCTCAACACCTTTACTGCTAACAA
Found at i:73746522 original size:24 final size:24
Alignment explanation
Indices: 73746489--73746551 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
73746479 CACTGCTAGC
73746489 AACC-TCAACACCC-TCTCCATTTA
1 AACCTTCAACACCCTTC-CCATTTA
*
73746512 AACCTTTAACACCCTTCCCATTTA
1 AACCTTCAACACCCTTCCCATTTA
73746536 AACCTTCAACACCCTT
1 AACCTTCAACACCCTT
73746552 ACCACCTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 4 0.11
24 30 0.83
25 2 0.06
ACGTcount: A:0.30, C:0.41, G:0.00, T:0.29
Consensus pattern (24 bp):
AACCTTCAACACCCTTCCCATTTA
Found at i:73747585 original size:29 final size:28
Alignment explanation
Indices: 73747465--73747585 Score: 93
Period size: 29 Copynumber: 4.2 Consensus size: 28
73747455 TAAAAAATAA
* * **
73747465 TAAACTAAAATCCCCAAAATCGAAATACTT
1 TAAACCAAAATCCCCAAATTC-AAA-ACCC
* * *
73747495 TAAACAAAAATCCCCAAAATCAGAACCCC
1 TAAACCAAAATCCCCAAATTCA-AAACCC
* *
73747524 T-AACCTAAAATCCTCAAATTCAATAA-CT
1 TAAACC-AAAATCCCCAAATTCAA-AACCC
73747552 TAAACCAAAATCCCCAAATTCAAAAGCCC
1 TAAACCAAAATCCCCAAATTCAAAA-CCC
73747581 TAAAC
1 TAAAC
73747586 ATAAACCGAA
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
27 2 0.03
28 22 0.30
29 28 0.38
30 22 0.30
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.19
Consensus pattern (28 bp):
TAAACCAAAATCCCCAAATTCAAAACCC
Found at i:73751967 original size:22 final size:23
Alignment explanation
Indices: 73751942--73751999 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
73751932 TTAAAAATAT
*
73751942 TAACTTTGTTAAATAATAAAC-G
1 TAACTTTGTTAAATAATAAACAC
**
73751964 TAACTTT-TTAAGCAATAAACAC
1 TAACTTTGTTAAATAATAAACAC
*
73751986 TAACATTGTTAAAT
1 TAACTTTGTTAAAT
73752000 TTTGGTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 11 0.39
22 13 0.46
23 4 0.14
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (23 bp):
TAACTTTGTTAAATAATAAACAC
Found at i:73754135 original size:18 final size:18
Alignment explanation
Indices: 73754114--73754241 Score: 83
Period size: 18 Copynumber: 7.4 Consensus size: 18
73754104 CTTCTCACCA
*
73754114 TCTTTCTTGGTTTCATCT
1 TCTTTCTTGGCTTCATCT
**
73754132 TCTTTCTTACCTTC-T-T
1 TCTTTCTTGGCTTCATCT
*
73754148 CCTTT-TTGGCTTCA---
1 TCTTTCTTGGCTTCATCT
*
73754162 TCTTTCGTTTG-TTCATCT
1 TCTTTC-TTGGCTTCATCT
* * *
73754180 TCCTTCTTGGGTTCACCT
1 TCTTTCTTGGCTTCATCT
*
73754198 TCTTTCTTTTG-TTCATCT
1 TCTTTC-TTGGCTTCATCT
* *
73754216 TCTTTTTTGGCTTCACCT
1 TCTTTCTTGGCTTCATCT
73754234 TCTTTCTT
1 TCTTTCTT
73754242 TGGTTCCTCT
Statistics
Matches: 83, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
14 4 0.05
15 10 0.12
16 8 0.10
17 7 0.08
18 51 0.61
19 3 0.04
ACGTcount: A:0.05, C:0.27, G:0.09, T:0.59
Consensus pattern (18 bp):
TCTTTCTTGGCTTCATCT
Found at i:73754162 original size:33 final size:31
Alignment explanation
Indices: 73754115--73754241 Score: 92
Period size: 36 Copynumber: 3.8 Consensus size: 31
73754105 TTCTCACCAT
* * *
73754115 CTTTCTTGGTTTCATCTTCTTTCTTACCTTCTTC
1 CTTT-TTGGCTTCACCTTCTTTCTT--CATCTTC
* *
73754149 CTTTTTGGCTTCATCTTTCGTTTGTTCATCTTC
1 CTTTTTGGCTTCA-CCTTC-TTTCTTCATCTTC
* *
73754182 CTTCTTGGGTTCACCTTCTTTCTTTTGTTCATCTTC
1 CTTTTTGGCTTCACCTTCTTTC-----TTCATCTTC
*
73754218 TTTTTTGGCTTCACCTTCTTTCTT
1 CTTTTTGGCTTCACCTTCTTTCTT
73754242 TGGTTCCTCT
Statistics
Matches: 74, Mismatches: 12, Indels: 17
0.72 0.12 0.17
Matches are distributed among these distances:
31 5 0.07
32 4 0.05
33 25 0.34
34 7 0.09
35 5 0.07
36 28 0.38
ACGTcount: A:0.06, C:0.27, G:0.09, T:0.58
Consensus pattern (31 bp):
CTTTTTGGCTTCACCTTCTTTCTTCATCTTC
Found at i:73754209 original size:36 final size:36
Alignment explanation
Indices: 73754144--73754258 Score: 137
Period size: 36 Copynumber: 3.3 Consensus size: 36
73754134 TTTCTTACCT
* *
73754144 TCTTCCTTTTTGGCTTCA---TCTTTCGTTTGTTCA
1 TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
*
73754177 TCTTCCTTCTTGGGTTCACCTTCTTTCTTTTGTTCA
1 TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
* * * *
73754213 TCTTCTTTTTTGGCTTCACCTTCTTTCTTTGGTTCC
1 TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
*
73754249 TCTTTCTTCT
1 TCTTCCTTCT
73754259 CTGGTTCTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
33 16 0.24
36 52 0.76
ACGTcount: A:0.04, C:0.27, G:0.10, T:0.58
Consensus pattern (36 bp):
TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
Found at i:73757266 original size:13 final size:13
Alignment explanation
Indices: 73757244--73757274 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
73757234 TTATATGATA
73757244 TTTA-AATAATTT
1 TTTATAATAATTT
73757256 TTTATAATAATTT
1 TTTATAATAATTT
73757269 TTTATA
1 TTTATA
73757275 TTCACATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTATAATAATTT
Found at i:73761364 original size:18 final size:19
Alignment explanation
Indices: 73761341--73761385 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
73761331 CATGTCCCTT
73761341 TTTTTTTTCATTTTCAG-C
1 TTTTTTTTCATTTTCAGAC
* *
73761359 TTTTTTTTCGTTTTCAGAG
1 TTTTTTTTCATTTTCAGAC
73761378 TTTTTTTT
1 TTTTTTTT
73761386 TTTTACTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.09, C:0.11, G:0.09, T:0.71
Consensus pattern (19 bp):
TTTTTTTTCATTTTCAGAC
Found at i:73766225 original size:27 final size:27
Alignment explanation
Indices: 73766169--73766225 Score: 62
Period size: 29 Copynumber: 2.1 Consensus size: 27
73766159 ATAATAGCTG
73766169 TTTTTTTCAATTTGGCACCTAAAGAATT
1 TTTTTTTCAATTTGGCACCTAAAG-ATT
* **
73766197 TTTTTTCTCAGTTTGGTTCCTAAAG-TT
1 TTTTTT-TCAATTTGGCACCTAAAGATT
73766224 TT
1 TT
73766226 GCCCTGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 4 0.16
28 6 0.24
29 15 0.60
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (27 bp):
TTTTTTTCAATTTGGCACCTAAAGATT
Found at i:73772063 original size:18 final size:19
Alignment explanation
Indices: 73772027--73772063 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
73772017 TTATTTGTTT
*
73772027 TTAAAATTATAATAAACAC
1 TTAAAATTATAAGAAACAC
73772046 TTAAAATT-TAAGAAACAC
1 TTAAAATTATAAGAAACAC
73772064 ATCAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.30
Consensus pattern (19 bp):
TTAAAATTATAAGAAACAC
Found at i:73776162 original size:23 final size:23
Alignment explanation
Indices: 73776136--73776181 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
73776126 TTCTTAGAAG
73776136 ATAGAGACATAGATGTGACTGAC
1 ATAGAGACATAGATGTGACTGAC
73776159 ATAGAGACATAGATGTGACTGAC
1 ATAGAGACATAGATGTGACTGAC
73776182 TGGAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (23 bp):
ATAGAGACATAGATGTGACTGAC
Found at i:73786821 original size:93 final size:93
Alignment explanation
Indices: 73786709--73786880 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
73786699 GCCCATAAGT
*
73786709 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73786773 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
73786802 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73786867 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
73786881 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73786871 original size:46 final size:46
Alignment explanation
Indices: 73786701--73786876 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
73786691 TGTAACCCGC
*
73786701 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCAT
*
73786747 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
73786793 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
73786840 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73786877 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:73790333 original size:17 final size:16
Alignment explanation
Indices: 73790311--73790343 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
73790301 TATCAACCAA
73790311 TTCATATACAATATCAT
1 TTCATATACAA-ATCAT
73790328 TTCATATACAAATCAT
1 TTCATATACAAATCAT
73790344 GTTAATCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (16 bp):
TTCATATACAAATCAT
Found at i:73790852 original size:37 final size:39
Alignment explanation
Indices: 73790768--73790840 Score: 100
Period size: 35 Copynumber: 2.0 Consensus size: 39
73790758 ATCGGAAAGT
*
73790768 CCGAAGTAAATAGATTGTGCCCAGAACTCATCGGTATAA
1 CCGAAGTAAATAGATTGTGCCCAGAACTCATCGATATAA
*
73790807 CCGAAGTAAA-AG-TTGTG-CCA-CACTCATCGATATA
1 CCGAAGTAAATAGATTGTGCCCAGAACTCATCGATATA
73790841 TAGTCGAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 12 0.38
36 3 0.09
37 5 0.16
38 2 0.06
39 10 0.31
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (39 bp):
CCGAAGTAAATAGATTGTGCCCAGAACTCATCGATATAA
Found at i:73792014 original size:10 final size:9
Alignment explanation
Indices: 73791966--73792022 Score: 53
Period size: 9 Copynumber: 5.9 Consensus size: 9
73791956 ACAAATAAAT
73791966 AAAAGAAA-
1 AAAAGAAAG
73791974 AAAAGAAAG
1 AAAAGAAAG
*
73791983 ACAAGCAAAACG
1 AAAAG--AAA-G
73791995 AAACAGAAAGG
1 AAA-AGAAA-G
73792006 AAAAGAAAG
1 AAAAGAAAG
73792015 AAAAGAAA
1 AAAAGAAA
73792023 AAGTGAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
8 8 0.20
9 13 0.32
10 5 0.12
11 10 0.24
12 3 0.07
13 2 0.05
ACGTcount: A:0.74, C:0.07, G:0.19, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:73792988 original size:41 final size:39
Alignment explanation
Indices: 73792943--73793078 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 39
73792933 CGACTTCGAG
73792943 TCGATGAGACACTGGGTGTCAATTCACTACTTCGGATTAAC
1 TCGATGAGACACTGGGTGTCAATT-A-TACTTCGGATTAAC
* * *
73792984 TCGATGAGGCA-TAGGGTGCCAATT-TACTTC-GATTTAGC
1 TCGATGAGACACT-GGGTGTCAATTATACTTCGGA-TTAAC
* *
73793022 T-GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 TCGATGAGACACTGGGTGTC-AATTA-TACTTCGGATTAAC
*
73793062 -CGATGAGGCACTGGGTG
1 TCGATGAGACACTGGGTG
73793079 CCAAACTGGG
Statistics
Matches: 79, Mismatches: 8, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
37 16 0.20
38 16 0.20
40 26 0.33
41 21 0.27
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGTCAATTATACTTCGGATTAAC
Found at i:73793088 original size:12 final size:12
Alignment explanation
Indices: 73793071--73793111 Score: 82
Period size: 12 Copynumber: 3.4 Consensus size: 12
73793061 CCGATGAGGC
73793071 ACTGGGTGCCAA
1 ACTGGGTGCCAA
73793083 ACTGGGTGCCAA
1 ACTGGGTGCCAA
73793095 ACTGGGTGCCAA
1 ACTGGGTGCCAA
73793107 ACTGG
1 ACTGG
73793112 TCTGTTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.17
Consensus pattern (12 bp):
ACTGGGTGCCAA
Found at i:73794580 original size:22 final size:22
Alignment explanation
Indices: 73794555--73794675 Score: 129
Period size: 22 Copynumber: 5.5 Consensus size: 22
73794545 CAGCTTATTG
* *
73794555 GAGCTTACCGTTCATCTCAGTA
1 GAGCTTACCGTTCAGCTCAATA
73794577 GAGCTTACCGTTCTA-CTCAATA
1 GAGCTTACCGTTC-AGCTCAATA
* *
73794599 GATCTTACCGTTCAGCTCATTA
1 GAGCTTACCGTTCAGCTCAATA
* *
73794621 AAGCTTACCATTTCAGCTCAATA
1 GAGCTTACC-GTTCAGCTCAATA
* *
73794644 GAGCTTACTGTTCAGCTCGAA-G
1 GAGCTTACCGTTCAGCTC-AATA
73794666 GAGCTTACCG
1 GAGCTTACCG
73794676 ACCATGACTC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
21 1 0.01
22 61 0.73
23 21 0.25
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (22 bp):
GAGCTTACCGTTCAGCTCAATA
Found at i:73794914 original size:21 final size:21
Alignment explanation
Indices: 73794890--73794957 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
73794880 GACTAACATG
73794890 TGATGGATACTTGTGATTAGA
1 TGATGGATACTTGTGATTAGA
* * * *
73794911 TGATGGTTAAATTG-AATT-GT
1 TGATGGAT-ACTTGTGATTAGA
73794931 TGATGGATACTTGTGATTAGA
1 TGATGGATACTTGTGATTAGA
73794952 TGATGG
1 TGATGG
73794958 TTAAATTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 4 0.11
20 11 0.31
21 17 0.47
22 4 0.11
ACGTcount: A:0.28, C:0.03, G:0.29, T:0.40
Consensus pattern (21 bp):
TGATGGATACTTGTGATTAGA
Found at i:73794936 original size:20 final size:20
Alignment explanation
Indices: 73794911--73794973 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
73794901 TGTGATTAGA
73794911 TGATGGTTAAATTGAATTGT
1 TGATGGTTAAATTGAATTGT
* * * *
73794931 TGATGGAT-ACTTGTGATTAGA
1 TGATGGTTAAATTG-AATT-GT
73794952 TGATGGTTAAATTGAATTGT
1 TGATGGTTAAATTGAATTGT
73794972 TG
1 TG
73794974 GCATTTTTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 4 0.12
20 13 0.41
21 11 0.34
22 4 0.12
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.43
Consensus pattern (20 bp):
TGATGGTTAAATTGAATTGT
Found at i:73794936 original size:41 final size:41
Alignment explanation
Indices: 73794890--73794973 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
73794880 GACTAACATG
73794890 TGATGGATACTTGTGATTAGATGATGGTTAAATTGAATTGT
1 TGATGGATACTTGTGATTAGATGATGGTTAAATTGAATTGT
73794931 TGATGGATACTTGTGATTAGATGATGGTTAAATTGAATTGT
1 TGATGGATACTTGTGATTAGATGATGGTTAAATTGAATTGT
73794972 TG
1 TG
73794974 GCATTTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (41 bp):
TGATGGATACTTGTGATTAGATGATGGTTAAATTGAATTGT
Found at i:73796360 original size:242 final size:241
Alignment explanation
Indices: 73795887--73796366 Score: 807
Period size: 242 Copynumber: 2.0 Consensus size: 241
73795877 CACGGGCTTG
* * *
73795887 TGTCACTTGAAAAGTTGAAAATTTCTAGGTTTCTGAAATTTTTATATGTTATCAATTTAGTACCA
1 TGTCACTTGAAAAATTGAAAATTTCTAAGTTTCTGAAATTTTTATATATTATCAATTTAGTACCA
*
73795952 AATGCATGATTAAGATTTTGTATGAGTAATTTAAGTACATTTTGAATGTGAATGATTGATGGTTA
66 AATGCATGATTAAGACTTTGTATGAGTAATTTAAGTACATTTTGAATGTGAATGATTGATGGTTA
* *
73796017 CTGAAATGAGATGGAATTTGTTAAATGAATGTTTTGAATTGAGTTACAGGTCTTGTAATGCCTCT
131 CTGAAATGAGATGGAATTTGTTAAATGAATGTTTTGAATTGAGCTACAGGTCTGGTAATGCCTCT
* *
73796082 TAACCTATTCTGGCGACAGTTACAGGTTAGGGGTGTTACATTTGTT
196 TAACCTATTCCGGCGACAGTTACAGGTTAAGGGTGTTACATTTGTT
*
73796128 TGTCACTTGAAAAATTGAAAACTTTCTAAGTTTTTGAAATTTTTATATATTATCAATTTAGTACC
1 TGTCACTTGAAAAATTGAAAA-TTTCTAAGTTTCTGAAATTTTTATATATTATCAATTTAGTACC
*
73796193 AAATGCATGATTAAGACTTTGTATGATTAATTTAAGTACATTTTGAATGTGAATGATTGATGGTT
65 AAATGCATGATTAAGACTTTGTATGAGTAATTTAAGTACATTTTGAATGTGAATGATTGATGGTT
* * *
73796258 ACTGAAATGAGATGGAATTTGTTAAATGAATGTTTTGAATTGTGCTATAGGTCTGGTAATGCCTT
130 ACTGAAATGAGATGGAATTTGTTAAATGAATGTTTTGAATTGAGCTACAGGTCTGGTAATGCCTC
* * *
73796323 TTAACCTATTCCGGTGATAGTTACGGGTTAAGGGTGTTACATTT
195 TTAACCTATTCCGGCGACAGTTACAGGTTAAGGGTGTTACATTT
73796367 ATTGGTATCA
Statistics
Matches: 222, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
241 20 0.09
242 202 0.91
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (241 bp):
TGTCACTTGAAAAATTGAAAATTTCTAAGTTTCTGAAATTTTTATATATTATCAATTTAGTACCA
AATGCATGATTAAGACTTTGTATGAGTAATTTAAGTACATTTTGAATGTGAATGATTGATGGTTA
CTGAAATGAGATGGAATTTGTTAAATGAATGTTTTGAATTGAGCTACAGGTCTGGTAATGCCTCT
TAACCTATTCCGGCGACAGTTACAGGTTAAGGGTGTTACATTTGTT
Found at i:73802425 original size:23 final size:23
Alignment explanation
Indices: 73802398--73802506 Score: 134
Period size: 22 Copynumber: 4.9 Consensus size: 23
73802388 ATAGCTCGTA
73802398 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCATT
* * *
73802421 GGAGCTTACTG-TTCAGCTTAGT
1 AGAGCTTACTGTTTCAGCTCATT
* *
73802443 AGAACTTACCGTTT-AGCTCATT
1 AGAGCTTACTGTTTCAGCTCATT
* *
73802465 AGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCATT
73802488 AGAGCTTACTG-TTCAGCTC
1 AGAGCTTACTGTTTCAGCTC
73802507 GAAGGAGCTT
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
22 44 0.60
23 29 0.40
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCATT
Found at i:73802483 original size:45 final size:44
Alignment explanation
Indices: 73802402--73802506 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 44
73802392 CTCGTAAGAG
* * * *
73802402 CTTACTGTTTCAGCTCATTGGAGCTTACTGTTCAGCTTAGTAGAA
1 CTTACTGTTT-AGCTCATTAGAGCTTACCGTTCAGCTCAATAGAA
* *
73802447 CTTACCGTTTAGCTCATTAGAGCTTACCGTTTCAGCTCAATAGAG
1 CTTACTGTTTAGCTCATTAGAGCTTACCG-TTCAGCTCAATAGAA
*
73802492 CTTACTGTTCAGCTC
1 CTTACTGTTTAGCTC
73802507 GAAGGAGCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 17 0.33
45 34 0.67
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (44 bp):
CTTACTGTTTAGCTCATTAGAGCTTACCGTTCAGCTCAATAGAA
Found at i:73802515 original size:45 final size:44
Alignment explanation
Indices: 73802398--73802517 Score: 127
Period size: 45 Copynumber: 2.7 Consensus size: 44
73802388 ATAGCTCGTA
* * * *
73802398 AGAGCTTACTGTTTCAGCTCATTGGAGCTTACTGTTCAGCTTAGT
1 AGAGCTTACTG-TTCAGCTCATAGGAGCTTACCGTTCAGCTCAAT
* * *
73802443 AGAACTTACCGTTTAGCTCATTA-GAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCA-TAGGAGCTTACCG-TTCAGCTCAAT
73802488 AGAGCTTACTGTTCAGCTCGA-AGGAGCTTA
1 AGAGCTTACTGTTCAGCTC-ATAGGAGCTTA
73802518 TCGACCATGA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
44 18 0.30
45 42 0.69
46 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (44 bp):
AGAGCTTACTGTTCAGCTCATAGGAGCTTACCGTTCAGCTCAAT
Found at i:73806219 original size:15 final size:15
Alignment explanation
Indices: 73806197--73806252 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
73806187 TCTGACATCT
73806197 TTTTATTTTTTTTTC
1 TTTTATTTTTTTTTC
* *
73806212 TCTTATTTTCATATTTC
1 TTTTATTTT--TTTTTC
**
73806229 TTTTGGTTTTTTTTC
1 TTTTATTTTTTTTTC
73806244 TTTTATTTT
1 TTTTATTTT
73806253 CATATTTCTT
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
15 20 0.65
17 11 0.35
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (15 bp):
TTTTATTTTTTTTTC
Found at i:73806232 original size:33 final size:33
Alignment explanation
Indices: 73806194--73806265 Score: 110
Period size: 32 Copynumber: 2.2 Consensus size: 33
73806184 CCTTCTGACA
*
73806194 TCTTTTTATTTTTTTTTCTCTTATTTTCATATT
1 TCTTTTTAGTTTTTTTTCTCTTATTTTCATATT
* *
73806227 TC-TTTTGGTTTTTTTTCTTTTATTTTCATATT
1 TCTTTTTAGTTTTTTTTCTCTTATTTTCATATT
73806259 TCTTTTT
1 TCTTTTT
73806266 TTTACTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 29 0.83
33 6 0.17
ACGTcount: A:0.10, C:0.11, G:0.03, T:0.76
Consensus pattern (33 bp):
TCTTTTTAGTTTTTTTTCTCTTATTTTCATATT
Found at i:73806244 original size:32 final size:32
Alignment explanation
Indices: 73806203--73806264 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
73806193 ATCTTTTTAT
73806203 TTTTTTTTCTCTTATTTTCATATTTCTTTTGG
1 TTTTTTTTCTCTTATTTTCATATTTCTTTTGG
*
73806235 TTTTTTTTCTTTTATTTTCATATTTCTTTT
1 TTTTTTTTCTCTTATTTTCATATTTCTTTT
73806265 TTTTACTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.10, C:0.11, G:0.03, T:0.76
Consensus pattern (32 bp):
TTTTTTTTCTCTTATTTTCATATTTCTTTTGG
Found at i:73806316 original size:9 final size:9
Alignment explanation
Indices: 73806302--73806372 Score: 56
Period size: 9 Copynumber: 7.9 Consensus size: 9
73806292 AAATTTTATC
73806302 TTTTTATTT
1 TTTTTATTT
*
73806311 TTTTTACTT
1 TTTTTATTT
*
73806320 TTTTGA-TT
1 TTTTTATTT
*
73806328 TTTTT-CTT
1 TTTTTATTT
* *
73806336 ATTTCATTT
1 TTTTTATTT
*
73806345 TGTTTATTT
1 TTTTTATTT
73806354 TGTTTTATTT
1 T-TTTTATTT
73806364 TTTATTATT
1 TTT-TTATT
73806373 AACTTTAAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 11 0.23
9 24 0.50
10 13 0.27
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (9 bp):
TTTTTATTT
Found at i:73806345 original size:24 final size:24
Alignment explanation
Indices: 73806318--73806363 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
73806308 TTTTTTTTAC
*
73806318 TTTT-TTGATTTTTTTCTTATTTCA
1 TTTTGTTGATTTTGTT-TTATTTCA
*
73806342 TTTTGTTTATTTTGTTTTATTT
1 TTTTGTTGATTTTGTTTTATTT
73806364 TTTATTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78
Consensus pattern (24 bp):
TTTTGTTGATTTTGTTTTATTTCA
Found at i:73806365 original size:34 final size:32
Alignment explanation
Indices: 73806294--73806372 Score: 79
Period size: 34 Copynumber: 2.4 Consensus size: 32
73806284 TCCTTAATAA
* *
73806294 ATTTTATCTT-TTTATTTTTTTTACTTTTTTG
1 ATTTTTTCTTATTTATTTTGTTTACTTTTTTG
* *
73806325 ATTTTTTTCTTATTTCATTTTGTTTATTTTGTTTT
1 A-TTTTTTCTTATTT-ATTTTGTTTACTTT-TTTG
*
73806360 ATTTTTTATTATT
1 ATTTTTTCTTATT
73806373 AACTTTAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
31 1 0.03
32 8 0.21
33 3 0.08
34 23 0.59
35 4 0.10
ACGTcount: A:0.14, C:0.05, G:0.04, T:0.77
Consensus pattern (32 bp):
ATTTTTTCTTATTTATTTTGTTTACTTTTTTG
Found at i:73806551 original size:14 final size:14
Alignment explanation
Indices: 73806534--73806560 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73806524 TTTTTTAAAA
73806534 TTTTAAATATTAAT
1 TTTTAAATATTAAT
73806548 TTTTAAATATTAA
1 TTTTAAATATTAA
73806561 CCATATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:73806560 original size:37 final size:37
Alignment explanation
Indices: 73806418--73806560 Score: 129
Period size: 37 Copynumber: 4.0 Consensus size: 37
73806408 TTTATAATAC
* *
73806418 TTTTTTAAAATTTTAATTA-T-TATTTTTAAAAAT-A
1 TTTTTTAAAATTTTAAATATTATATTTTTAAAATTAA
* * * * *
73806452 TTTTTT-TAACTTTAGATA-TATATTTGTGAAATTAA
1 TTTTTTAAAATTTTAAATATTATATTTTTAAAATTAA
* * *
73806487 TTTTTTATATATTTTAAA-AATATATTTTTCAAATTAA
1 TTTTTTA-AAATTTTAAATATTATATTTTTAAAATTAA
73806524 TTTTTTAAAATTTTAAATATTA-ATTTTTAAATATTAA
1 TTTTTTAAAATTTTAAATATTATATTTTTAAA-ATTAA
73806561 CCATATTTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
33 9 0.10
34 16 0.19
35 7 0.08
36 18 0.21
37 36 0.42
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (37 bp):
TTTTTTAAAATTTTAAATATTATATTTTTAAAATTAA
Found at i:73806567 original size:23 final size:23
Alignment explanation
Indices: 73806519--73806560 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
73806509 TATTTTTCAA
*
73806519 ATTAATTTTTTAAAATTTTAAAT
1 ATTAATTTTTTAAAATATTAAAT
73806542 ATTAA-TTTTT-AAATATTAA
1 ATTAATTTTTTAAAATATTAA
73806561 CCATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 5 0.28
23 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTAATTTTTTAAAATATTAAAT
Found at i:73806651 original size:21 final size:22
Alignment explanation
Indices: 73806621--73806665 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
73806611 CAATTTCTTT
*
73806621 AATTTCTTTTTAAATTTTTTAA
1 AATTTCTTTTTAAATTTTTGAA
*
73806643 AATTT-TTTTTTAATTTTTGAA
1 AATTTCTTTTTAAATTTTTGAA
73806664 AA
1 AA
73806666 GTTTAGGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
AATTTCTTTTTAAATTTTTGAA
Found at i:73806657 original size:11 final size:11
Alignment explanation
Indices: 73806618--73806660 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
73806608 ATACAATTTC
*
73806618 TTTAATTTCTT
1 TTTAATTTTTT
*
73806629 TTTAAATTTTT
1 TTTAATTTTTT
**
73806640 TAAAATTTTTT
1 TTTAATTTTTT
73806651 TTTAATTTTT
1 TTTAATTTTT
73806661 GAAAAGTTTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTAATTTTTT
Found at i:73806776 original size:18 final size:19
Alignment explanation
Indices: 73806755--73806796 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
73806745 TTTTTTTACT
73806755 TTTTTATTAAATT-TTGTC
1 TTTTTATTAAATTATTGTC
* * *
73806773 TTTTTCTTAATTTATTTTC
1 TTTTTATTAAATTATTGTC
73806792 TTTTT
1 TTTTT
73806797 TAAGTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTTTATTAAATTATTGTC
Found at i:73806853 original size:18 final size:17
Alignment explanation
Indices: 73806779--73806849 Score: 52
Period size: 18 Copynumber: 3.9 Consensus size: 17
73806769 TGTCTTTTTC
* * *
73806779 TTAATTTATTTTCTTTT
1 TTAATTTATATTATTAT
*
73806796 TTAAGTTTTATATTATTTT
1 TTAA--TTTATATTATTAT
* *
73806815 CTTATTTTATTTTATTTAT
1 -TTAATTTATATTA-TTAT
73806834 TTAATTTATATTATTA
1 TTAATTTATATTATTA
73806850 ATTTTAAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
17 7 0.16
18 19 0.44
19 14 0.33
20 3 0.07
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.70
Consensus pattern (17 bp):
TTAATTTATATTATTAT
Found at i:73806946 original size:33 final size:32
Alignment explanation
Indices: 73806879--73806997 Score: 98
Period size: 37 Copynumber: 3.6 Consensus size: 32
73806869 TATATTATTA
* *
73806879 ATTTTTACAATT-TTTTTAAATTTTAAT-TATT
1 ATTTTTAAAATTATTTTTTAATTTTAATATA-T
*
73806910 ATTTTTAAAATTATTTTTTAACTTTAGATATAT
1 ATTTTTAAAATTATTTTTTAATTTTA-ATATAT
* *
73806943 ATTTGTGAAATTATTTTTTTATAAATTTTAAATATAT
1 ATTTTTAAAATTA--TTTTT-T-AATTTT-AATATAT
* *
73806980 ATTTTTTAAATTAATTTT
1 ATTTTTAAAATTATTTTT
73806998 GAAATTATTA
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
31 11 0.15
32 11 0.15
33 14 0.20
34 2 0.03
35 9 0.13
36 1 0.01
37 22 0.31
38 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (32 bp):
ATTTTTAAAATTATTTTTTAATTTTAATATAT
Found at i:73807077 original size:12 final size:14
Alignment explanation
Indices: 73807061--73807093 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
73807051 TGCATACAAT
73807061 TTTTTAAATT-TTA
1 TTTTTAAATTCTTA
73807074 TTTTTAAATTCTT-
1 TTTTTAAATTCTTA
73807087 TTTTTAA
1 TTTTTAA
73807094 CATTAGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 17 0.89
14 2 0.11
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTAAATTCTTA
Found at i:73807250 original size:19 final size:20
Alignment explanation
Indices: 73807212--73807253 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
73807202 AATATAAATA
73807212 TTAAAAAATTAAATATTTTT
1 TTAAAAAATTAAATATTTTT
*
73807232 TTAAAATATTAAATATTTTT
1 TTAAAAAATTAAATATTTTT
73807252 TT
1 TT
73807254 CTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAAAATTAAATATTTTT
Found at i:73807420 original size:26 final size:26
Alignment explanation
Indices: 73807388--73807446 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
73807378 TTTTAAATAC
*
73807388 AATTTTTAAATACATTTAAAAAATCAT
1 AATTTTTAAATA-ATATAAAAAATCAT
* *
73807415 AATTTTTTAATAATATAAGAAATCAT
1 AATTTTTAAATAATATAAAAAATCAT
73807441 AATTTT
1 AATTTT
73807447 ATTTTGTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 18 0.62
27 11 0.38
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (26 bp):
AATTTTTAAATAATATAAAAAATCAT
Found at i:73809345 original size:21 final size:20
Alignment explanation
Indices: 73809320--73809368 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
73809310 CAAACTTTTC
73809320 AAAAATTAAAAAAAAAAGTTA
1 AAAAATTAAAAAAAAAA-TTA
* *
73809341 AAAAATTTAAAAAGAAATTA
1 AAAAATTAAAAAAAAAATTA
73809361 AAGAAATT
1 AA-AAATT
73809369 GTATTTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.22
Consensus pattern (20 bp):
AAAAATTAAAAAAAAAATTA
Found at i:73809615 original size:10 final size:9
Alignment explanation
Indices: 73809594--73809666 Score: 67
Period size: 9 Copynumber: 7.9 Consensus size: 9
73809584 TTTTAAAGTT
73809594 AATAATAAAA
1 AATAA-AAAA
73809604 AATAAAACAA
1 AATAAAA-AA
73809614 AATAAAAAA
1 AATAAAAAA
* *
73809623 AAT-GAAAT
1 AATAAAAAA
*
73809631 AAGAAAAAA
1 AATAAAAAA
*
73809640 AATCAAAAA
1 AATAAAAAA
*
73809649 AGTAAAAAAA
1 AAT-AAAAAA
73809659 AATAAAAA
1 AATAAAAA
73809667 GACAATTTAT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
8 5 0.10
9 24 0.48
10 21 0.42
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:73809637 original size:17 final size:18
Alignment explanation
Indices: 73809600--73809659 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 18
73809590 AGTTAATAAT
* *
73809600 AAAAAATAAAACAAAATAA
1 AAAAAATCAAA-AAAGTAA
* *
73809619 AAAAAATGAAATAAG-AA
1 AAAAAATCAAAAAAGTAA
73809636 AAAAAATCAAAAAAGTAA
1 AAAAAATCAAAAAAGTAA
73809654 AAAAAA
1 AAAAAA
73809660 ATAAAAAGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
17 15 0.43
18 10 0.29
19 10 0.29
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.10
Consensus pattern (18 bp):
AAAAAATCAAAAAAGTAA
Found at i:73809655 original size:45 final size:46
Alignment explanation
Indices: 73809597--73809706 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 46
73809587 TAAAGTTAAT
*
73809597 AATAAAAAA-TAAAACAAAATAAAAA-A-AATGAAATAAGAAAAAA
1 AATAAAAAAGTAAAAAAAAATAAAAAGACAATGAAATAAGAAAAAA
** * * *
73809640 AATCAAAAAAGTAAAAAAAAATAAAAAGACAATTTATTAAGGAACAA
1 AAT-AAAAAAGTAAAAAAAAATAAAAAGACAATGAAATAAGAAAAAA
73809687 AATAAAAAAGTAAAAAAAAA
1 AATAAAAAAGTAAAAAAAAA
73809707 GAAATATGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 3 0.05
44 6 0.11
45 15 0.26
46 18 0.32
47 15 0.26
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (46 bp):
AATAAAAAAGTAAAAAAAAATAAAAAGACAATGAAATAAGAAAAAA
Found at i:73809658 original size:11 final size:10
Alignment explanation
Indices: 73809594--73809666 Score: 58
Period size: 10 Copynumber: 6.8 Consensus size: 10
73809584 TTTTAAAGTT
*
73809594 AATAATAAAA
1 AATAAAAAAA
*
73809604 AATAAAACAA
1 AATAAAAAAA
73809614 AAT-AAAAAA
1 AATAAAAAAA
73809623 AATGAAATAAGAA
1 AAT-AAA-AA-AA
*
73809636 AAAAAATCAAAA
1 AATAAA--AAAA
73809648 AAGTAAAAAAA
1 AA-TAAAAAAA
73809659 AATAAAAA
1 AATAAAAA
73809667 GACAATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
9 8 0.16
10 17 0.33
11 8 0.16
12 9 0.18
13 9 0.18
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:73809667 original size:17 final size:16
Alignment explanation
Indices: 73809612--73809666 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
73809602 AAAATAAAAC
*
73809612 AAAATAAAAAAAATGAA
1 AAAAGAAAAAAAAT-AA
*
73809629 ATAAGAAAAAAAATCAA
1 AAAAGAAAAAAAAT-AA
73809646 AAAAGTAAAAAAAAATAA
1 AAAAG--AAAAAAAATAA
73809664 AAA
1 AAA
73809667 GACAATTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
17 18 0.56
18 5 0.16
19 9 0.28
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.11
Consensus pattern (16 bp):
AAAAGAAAAAAAATAA
Found at i:73809718 original size:17 final size:16
Alignment explanation
Indices: 73809698--73809771 Score: 64
Period size: 17 Copynumber: 4.6 Consensus size: 16
73809688 ATAAAAAAGT
73809698 AAAAAAAAAGAAATATG
1 AAAAAAAAAGAAA-ATG
*
73809715 AAAATAAAAG-AAA--
1 AAAAAAAAAGAAAATG
*
73809728 AAAACAAAAGAAATATG
1 AAAAAAAAAGAAA-ATG
* *
73809745 AAAATAAAAGAAAAAG
1 AAAAAAAAAGAAAATG
73809761 AAAACAAAAAG
1 AAAA-AAAAAG
73809772 GTGTCAGGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
13 9 0.19
14 2 0.04
15 2 0.04
16 8 0.17
17 26 0.55
ACGTcount: A:0.78, C:0.03, G:0.11, T:0.08
Consensus pattern (16 bp):
AAAAAAAAAGAAAATG
Found at i:73809721 original size:30 final size:30
Alignment explanation
Indices: 73809685--73809759 Score: 118
Period size: 30 Copynumber: 2.5 Consensus size: 30
73809675 ATTAAGGAAC
73809685 AAAATAAAA-AAGTAAAAA-AAAAGAAATATG
1 AAAATAAAAGAA--AAAAACAAAAGAAATATG
73809715 AAAATAAAAGAAAAAAACAAAAGAAATATG
1 AAAATAAAAGAAAAAAACAAAAGAAATATG
73809745 AAAATAAAAGAAAAA
1 AAAATAAAAGAAAAA
73809760 GAAAACAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
29 5 0.12
30 36 0.84
31 2 0.05
ACGTcount: A:0.79, C:0.01, G:0.09, T:0.11
Consensus pattern (30 bp):
AAAATAAAAGAAAAAAACAAAAGAAATATG
Found at i:73812967 original size:31 final size:30
Alignment explanation
Indices: 73812899--73812972 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
73812889 TGTATACATG
*
73812899 AACTTTAATTTGGTGCAATTGTACACGTGA
1 AACTTTAATTTGGTGCAAATGTACACGTGA
* * * **
73812929 AATTTTAATTGTGGTTCAAATGTATATTTGA
1 AACTTTAATT-TGGTGCAAATGTACACGTGA
73812960 AACTTTAAATTTG
1 AACTTT-AATTTG
73812973 ATTTAATCAT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
30 9 0.26
31 22 0.63
32 4 0.11
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (30 bp):
AACTTTAATTTGGTGCAAATGTACACGTGA
Found at i:73817828 original size:16 final size:16
Alignment explanation
Indices: 73817807--73817875 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
73817797 TTTGGTTCGC
73817807 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73817823 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73817839 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
*
73817856 TGTATTGGATTAGTGG
1 TGTATTGGATTAGAGG
73817872 TGTA
1 TGTA
73817876 ATAGCTAATC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:73817853 original size:33 final size:32
Alignment explanation
Indices: 73817807--73817875 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
73817797 TTTGGTTCGC
73817807 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
*
73817839 TGTATTGGGATTAGAGGTGTATTGGATTAGTGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
73817872 TGTA
1 TGTA
73817876 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.39
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:73827059 original size:23 final size:23
Alignment explanation
Indices: 73827033--73827076 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
73827023 TAAATATTGT
73827033 TTTATTAATATTTTAATTAGATA
1 TTTATTAATATTTTAATTAGATA
* *
73827056 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTAATTAGA
73827077 AAATGATAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTAATTAGATA
Found at i:73833225 original size:67 final size:67
Alignment explanation
Indices: 73833117--73833243 Score: 195
Period size: 67 Copynumber: 1.9 Consensus size: 67
73833107 CATATGTTAT
*
73833117 AGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTATCTT
1 AGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTATCTT
73833182 AC
66 AC
* *
73833184 AGGGGATTTAGCCTGGA-TTGATAATC-CTGCTGTAAGAAATGAGGTTCGTGAGAGTGTGCT
1 AGGGGATTTAGCCTGGACTAG-TAATCTC-GCTGTAAGAAATGAGGTTCGCGAGAGTGTGCT
73833244 CTTTGAAAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
66 3 0.05
67 52 0.95
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.29
Consensus pattern (67 bp):
AGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGAGAGTGTGCTATCTT
AC
Found at i:73835650 original size:22 final size:22
Alignment explanation
Indices: 73835607--73835657 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
73835597 CAAATACATA
*
73835607 AAATTAAAAAAGAAAAACGAAT
1 AAATTCAAAAAGAAAAACGAAT
* *
73835629 CAATTCAAAAATAACAAA-GAAT
1 AAATTCAAAAAGAA-AAACGAAT
73835651 AAATTCA
1 AAATTCA
73835658 GTATCAATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.67, C:0.10, G:0.06, T:0.18
Consensus pattern (22 bp):
AAATTCAAAAAGAAAAACGAAT
Found at i:73842696 original size:92 final size:92
Alignment explanation
Indices: 73842531--73842751 Score: 307
Period size: 92 Copynumber: 2.4 Consensus size: 92
73842521 TTTGACATGA
* * * * *
73842531 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
*
73842596 CATAGTCTTATTCATTTCATGTCACGC
66 CATAGTCTTATTCATTTCATATCACGC
* *
73842623 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
* * * *
73842688 CATGGTCTTATTCATTTCATATGAGGT
66 CATAGTCTTATTCATTTCATATCACGC
* * *
73842715 TTCCATGGTATTTTTCAACCATGGTCTTACACATTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTC
73842752 ATATCAGAGA
Statistics
Matches: 113, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 113 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATAGTCTTATTCATTTCATATCACGC
Found at i:73842755 original size:46 final size:46
Alignment explanation
Indices: 73842526--73842753 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
73842516 TTATCTTTGA
* * * * *
73842526 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
73842572 CATGTTGCCATGGTATCTTTCAACCATAGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * **
73842618 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
73842664 CATGTTGCCATGGTATCTTTCAGCCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * * **
73842710 GAGGTTTCCATGGTATTTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
73842754 ATCAGAGAGC
Statistics
Matches: 157, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 4 0.03
46 153 0.97
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:73859465 original size:23 final size:23
Alignment explanation
Indices: 73859435--73859524 Score: 101
Period size: 24 Copynumber: 3.7 Consensus size: 23
73859425 CTGATGGACA
73859435 GTAAGCTC-TATTGAGCTAAAACG
1 GTAAGCTCTTA-TGAGCTAAAACG
*
73859458 GTAAGCTCTTATGAGCTGAAAACA
1 GTAAGCTCTTATGAGCT-AAAACG
73859482 GTAAGCTCTTATGAGCTAATATATCG
1 GTAAGCTCTTATGAGCTAA-A-A-CG
* *
73859508 GTAAGCTCATACGAGCT
1 GTAAGCTCTTATGAGCT
73859525 GCGGTGAGTC
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
23 16 0.28
24 25 0.43
25 1 0.02
26 16 0.28
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (23 bp):
GTAAGCTCTTATGAGCTAAAACG
Found at i:73859485 original size:24 final size:23
Alignment explanation
Indices: 73859432--73859500 Score: 104
Period size: 24 Copynumber: 3.0 Consensus size: 23
73859422 GAGCTGATGG
73859432 ACAGTAAGCTC-TATTGAGCTAAA
1 ACAGTAAGCTCTTA-TGAGCTAAA
*
73859455 ACGGTAAGCTCTTATGAGCTGAAA
1 ACAGTAAGCTCTTATGAGCT-AAA
73859479 ACAGTAAGCTCTTATGAGCTAA
1 ACAGTAAGCTCTTATGAGCTAA
73859501 TATATCGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 18 0.43
24 24 0.57
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (23 bp):
ACAGTAAGCTCTTATGAGCTAAA
Found at i:73859486 original size:47 final size:50
Alignment explanation
Indices: 73859432--73859525 Score: 133
Period size: 47 Copynumber: 1.9 Consensus size: 50
73859422 GAGCTGATGG
* *
73859432 ACAGTAAGCTC-TATTGAGCTAA-A-A-CGGTAAGCTCTTATGAGCTGAAA
1 ACAGTAAGCTCTTA-TGAGCTAATATATCGGTAAGCTCATACGAGCTGAAA
73859479 ACAGTAAGCTCTTATGAGCTAATATATCGGTAAGCTCATACGAGCTG
1 ACAGTAAGCTCTTATGAGCTAATATATCGGTAAGCTCATACGAGCTG
73859526 CGGTGAGTCC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
47 19 0.46
48 3 0.07
49 1 0.02
50 18 0.44
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (50 bp):
ACAGTAAGCTCTTATGAGCTAATATATCGGTAAGCTCATACGAGCTGAAA
Found at i:73861742 original size:46 final size:45
Alignment explanation
Indices: 73861675--73861774 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 45
73861665 GGAAAGTGAT
* * *
73861675 TAAGACCATAGTTGAAAAACACTATGGGACTATACTGGAGAATAAA
1 TAAGACCATAGTTGAAAAACACTATGGCACCATACTAGA-AATAAA
* *
73861721 TAAGACCATAGTTGAAAAACACTATGGCACCATACTAGAAATGAG
1 TAAGACCATAGTTGAAAAACACTATGGCACCATACTAGAAATAAA
73861766 TAAGACCAT
1 TAAGACCAT
73861775 GACTGAAAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 13 0.27
46 36 0.73
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAAACACTATGGCACCATACTAGAAATAAA
Found at i:73861813 original size:45 final size:45
Alignment explanation
Indices: 73861763--73861965 Score: 289
Period size: 45 Copynumber: 4.5 Consensus size: 45
73861753 TACTAGAAAT
73861763 GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATC
* * *
73861808 AAGTAAGACCATGATTGAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATC
* *
73861853 GAGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATC
* * * * *
73861898 GAGTAAGACCATAACTAAAAGACGCTATGGCATCACGAATCAAAC
1 GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATC
* **
73861943 GAATAAGACCATGTTTGAAAGAC
1 GAGTAAGACCATGACTGAAAGAC
73861966 ACCATGGAAC
Statistics
Matches: 140, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 140 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATC
Found at i:73864380 original size:19 final size:20
Alignment explanation
Indices: 73864356--73864398 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
73864346 ATAAATTTAA
*
73864356 GAATTTTTATAAA-TATTTT
1 GAATTTTTAAAAATTATTTT
73864375 GAA-TTTTAAAAATTATTTT
1 GAATTTTTAAAAATTATTTT
73864394 GAATT
1 GAATT
73864399 ATTTTGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 8 0.38
19 12 0.57
20 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
GAATTTTTAAAAATTATTTT
Found at i:73866344 original size:26 final size:26
Alignment explanation
Indices: 73866315--73866367 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
73866305 TCAAACATGC
*
73866315 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
73866341 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
73866367 A
1 A
73866368 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:73867885 original size:26 final size:26
Alignment explanation
Indices: 73867855--73867936 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
73867845 TGAAATTCCC
73867855 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
73867881 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73867907 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73867933 ATCA
1 ATCA
73867937 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73870123 original size:13 final size:13
Alignment explanation
Indices: 73870091--73870124 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
73870081 GCCCATTTAC
73870091 AAACCCAAAATTT
1 AAACCCAAAATTT
*
73870104 -GACCCAAAATTT
1 AAACCCAAAATTT
73870116 AAACCCAAA
1 AAACCCAAA
73870125 CAAATCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.53, C:0.26, G:0.03, T:0.18
Consensus pattern (13 bp):
AAACCCAAAATTT
Found at i:73871926 original size:191 final size:190
Alignment explanation
Indices: 73871603--73871991 Score: 724
Period size: 191 Copynumber: 2.0 Consensus size: 190
73871593 TCATGTAATT
73871603 AAAAAATAACGTTATAATGAATCTGAATTTAACACAATATTTTTAATATATGCAAAAATAATGTA
1 AAAAAATAACGTTATAATGAATCTGAATTTAACACAATATTTTTAATATATGCAAAAATAATGTA
*
73871668 AAATATAAACTTATAGATAAAAATAAATTCAATTAAACAATGAAAAAATAAGTAAATCTCAAATA
66 AAATATAAACTTATAGATAAAAATAAATTCAATTAAACAATGAAAAAATAAGAAAATCTCAAATA
73871733 TATGATTGTTTAATTGAAAACAACTTTTATGAAATATTTTAAACAAATCTACCAAACAAC
131 TATGATTGTTTAATTGAAAACAACTTTTATGAAATATTTTAAACAAATCTACCAAACAAC
* *
73871793 AAAAAATGACGTTATAATGAATCTGAATTTAACATAATATTTTTAATATATGCAAAAAATAATGT
1 AAAAAATAACGTTATAATGAATCTGAATTTAACACAATATTTTTAATATATGC-AAAAATAATGT
73871858 AAAATATAAACTTATAGATAAAAATAAATTCAATTAAACAATGAAAAAATAAGAAAATCTCAAAT
65 AAAATATAAACTTATAGATAAAAATAAATTCAATTAAACAATGAAAAAATAAGAAAATCTCAAAT
* *
73871923 ATATGTTTGTTTAATTGAAAACAACTTTTATGAAATATTTTTAACAAATCTACCAAACAAC
130 ATATGATTGTTTAATTGAAAACAACTTTTATGAAATATTTTAAACAAATCTACCAAACAAC
73871984 AAAAAATA
1 AAAAAATA
73871992 TTTTACACAG
Statistics
Matches: 192, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
190 51 0.27
191 141 0.73
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (190 bp):
AAAAAATAACGTTATAATGAATCTGAATTTAACACAATATTTTTAATATATGCAAAAATAATGTA
AAATATAAACTTATAGATAAAAATAAATTCAATTAAACAATGAAAAAATAAGAAAATCTCAAATA
TATGATTGTTTAATTGAAAACAACTTTTATGAAATATTTTAAACAAATCTACCAAACAAC
Found at i:73873709 original size:13 final size:13
Alignment explanation
Indices: 73873691--73873715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73873681 TTTAGGTATA
73873691 AATAAATAAAAGC
1 AATAAATAAAAGC
73873704 AATAAATAAAAG
1 AATAAATAAAAG
73873716 GGTTAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (13 bp):
AATAAATAAAAGC
Found at i:73874474 original size:26 final size:26
Alignment explanation
Indices: 73874438--73874490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
73874428 CAAGAAACTC
73874438 AGTCAAGCCTCAACAAAAGGGTTGAA
1 AGTCAAGCCTCAACAAAAGGGTTGAA
*
73874464 AGTCAAGCCTCGACAAAAGGGTTGAA
1 AGTCAAGCCTCAACAAAAGGGTTGAA
73874490 A
1 A
73874491 ACCTTTCGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.15
Consensus pattern (26 bp):
AGTCAAGCCTCAACAAAAGGGTTGAA
Found at i:73876541 original size:26 final size:26
Alignment explanation
Indices: 73876512--73876564 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
73876502 TCAAACATGC
*
73876512 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
73876538 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
73876564 A
1 A
73876565 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:73878125 original size:26 final size:26
Alignment explanation
Indices: 73878052--73878134 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
73878042 CATGAAATTC
*
73878052 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
73878078 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
* *
73878103 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
73878129 TTATCA
1 TTATCA
73878135 ATTCGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
25 24 0.45
26 29 0.55
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:73878529 original size:23 final size:23
Alignment explanation
Indices: 73878503--73878547 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73878493 TGTTATATAT
*
73878503 ATTTATAATTTTTTA-TAATTTTA
1 ATTTA-AATTTTCTAGTAATTTTA
*
73878526 ATTTAAGTTTTCTAGTAATTTT
1 ATTTAAATTTTCTAGTAATTTT
73878548 TATAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (23 bp):
ATTTAAATTTTCTAGTAATTTTA
Found at i:73888162 original size:29 final size:29
Alignment explanation
Indices: 73888120--73888178 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
73888110 ATGATTTAGG
73888120 TAAATCATACCATGAACGTCACAAGTGAA
1 TAAATCATACCATGAACGTCACAAGTGAA
73888149 TAAATCATACCATGAACGTCACAAGTGAA
1 TAAATCATACCATGAACGTCACAAGTGAA
73888178 T
1 T
73888179 TAATTCACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.22
Consensus pattern (29 bp):
TAAATCATACCATGAACGTCACAAGTGAA
Found at i:73888548 original size:15 final size:15
Alignment explanation
Indices: 73888524--73888555 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73888514 TATGCATGCA
*
73888524 AAATATAAAAGACAT
1 AAATACAAAAGACAT
73888539 AAATACAAAAGACAT
1 AAATACAAAAGACAT
73888554 AA
1 AA
73888556 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:73891309 original size:22 final size:22
Alignment explanation
Indices: 73891267--73891310 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73891257 AAACTTAAAA
* *
73891267 AAACATATATGGAAATTCATTC
1 AAACATATATGAAAATCCATTC
73891289 AAACATATAT-AAAAGTCCATTC
1 AAACATATATGAAAA-TCCATTC
73891311 GTTCTGCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATATGAAAATCCATTC
Found at i:73892587 original size:37 final size:37
Alignment explanation
Indices: 73892540--73892622 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
73892530 GAAAATTTGG
73892540 AGACAAGTCCAACGGACTGTCTTAGCTTGAAACATAA
1 AGACAAGTCCAACGGACTGTCTTAGCTTGAAACATAA
* * *
73892577 AGACGAGTCCAGCGGACTGTCTTAGCTTGAAACATTA
1 AGACAAGTCCAACGGACTGTCTTAGCTTGAAACATAA
*
73892614 GGACAAGTC
1 AGACAAGTC
73892623 TAGCAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (37 bp):
AGACAAGTCCAACGGACTGTCTTAGCTTGAAACATAA
Found at i:73892637 original size:37 final size:37
Alignment explanation
Indices: 73892540--73892642 Score: 125
Period size: 37 Copynumber: 2.8 Consensus size: 37
73892530 GAAAATTTGG
* *
73892540 AGACAAGTCCAACGGACTGTCTTAGCTTGAAACATAA
1 AGACAAGTCCAGCAGACTGTCTTAGCTTGAAACATAA
* * *
73892577 AGACGAGTCCAGCGGACTGTCTTAGCTTGAAACATTA
1 AGACAAGTCCAGCAGACTGTCTTAGCTTGAAACATAA
* * * *
73892614 GGACAAGTCTAGCAGACTATCTTAACTTG
1 AGACAAGTCCAGCAGACTGTCTTAGCTTG
73892643 TGTATGCCCA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (37 bp):
AGACAAGTCCAGCAGACTGTCTTAGCTTGAAACATAA
Found at i:73894412 original size:19 final size:17
Alignment explanation
Indices: 73894370--73894414 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
73894360 AATTATATAC
*
73894370 ATTACTTATTATTTAAGA
1 ATTA-TTATTATTTAAAA
73894388 ATTATTATTATGTTAAAA
1 ATTATTATTAT-TTAAAA
73894406 TATTATTAT
1 -ATTATTAT
73894415 ATTATTACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 7 0.29
18 9 0.38
19 8 0.33
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (17 bp):
ATTATTATTATTTAAAA
Found at i:73898379 original size:18 final size:18
Alignment explanation
Indices: 73898356--73898392 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73898346 AATATATATC
73898356 ACAAAAA-AAATCCTAATA
1 ACAAAAACAAAT-CTAATA
73898374 ACAAAAACAAATCTAATA
1 ACAAAAACAAATCTAATA
73898392 A
1 A
73898393 TAATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (18 bp):
ACAAAAACAAATCTAATA
Found at i:73898395 original size:3 final size:3
Alignment explanation
Indices: 73898387--73898415 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
73898377 AAAACAAATC
73898387 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73898416 TCACACGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73912801 original size:13 final size:15
Alignment explanation
Indices: 73912777--73912813 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
73912767 AAAATATAAT
*
73912777 AATAACATTAATA-A
1 AATAATATTAATATA
73912791 AAT-ATATTAATATA
1 AATAATATTAATATA
73912805 AATAATATT
1 AATAATATT
73912814 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 8 0.40
14 7 0.35
15 5 0.25
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
AATAATATTAATATA
Found at i:73912810 original size:22 final size:22
Alignment explanation
Indices: 73912767--73912811 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
73912757 TAGAATACCA
*
73912767 AAAATATAATAATAACATTAAT
1 AAAATATAATAATAACAATAAT
*
73912789 AAAATATATTAATATA-AATAAT
1 AAAATATAATAATA-ACAATAAT
73912811 A
1 A
73912812 TTGAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATATAATAATAACAATAAT
Found at i:73914686 original size:87 final size:86
Alignment explanation
Indices: 73914457--73914719 Score: 298
Period size: 87 Copynumber: 3.0 Consensus size: 86
73914447 AACAGACATT
* * *
73914457 AAAAACAGAAATTGAAAATAACTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATGTGA
1 AAAAACAGAAATTGAAAATACCTCA--ACGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
73914521 GTTGGTTTTTGAAACT-TAATTTG
63 GTTGATTTTTGAAAATAGAAATTG
* * ** * *
73914544 GAAAGCAGATTTTGAAAATA-CTGCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCT-CAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
73914608 TGATTTTTGAAAGATATAAATTG
65 TGATTTTTGAAA-ATAGAAATTG
* * * *
73914631 AAAAATAGAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
73914696 GATTTTTGAAAATAGAAATTG
66 GATTTTTGAAAATAGAAATTG
73914717 AAA
1 AAA
73914720 GTAGCTCAGC
Statistics
Matches: 150, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
84 2 0.01
85 43 0.29
86 15 0.10
87 88 0.59
88 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (86 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAATAGAAATTG
Found at i:73914710 original size:72 final size:73
Alignment explanation
Indices: 73914632--73914796 Score: 217
Period size: 74 Copynumber: 2.2 Consensus size: 73
73914622 TATAAATTGA
* *
73914632 AAAATAGAAATTAAAAATACCTCA-ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAATAGAAATTAAAAATACCTCACACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATAAGT
73914695 TGATTTTTG
65 TGATTTTTG
* * * * *
73914704 AAAATAGAAATTGAAAGTAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATGTGAGT
1 AAAATAGAAATTAAAAATACCTCA-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATAAGT
73914769 TGATTTTTG
65 TGATTTTTG
73914778 AAAAGTAGAAATTGAAAAA
1 AAAA-TAGAAATT-AAAAA
73914797 CAGAAATTGA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
72 21 0.27
74 45 0.57
75 10 0.13
76 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (73 bp):
AAAATAGAAATTAAAAATACCTCACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATAAGTT
GATTTTTG
Found at i:73914884 original size:163 final size:165
Alignment explanation
Indices: 73914579--73915362 Score: 704
Period size: 163 Copynumber: 4.8 Consensus size: 165
73914569 GCGTGCCCTG
*
73914579 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAGATATAAATTGAAAAATAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAG-TATAAATTGAAAAACAGAAAT
* * * * * *
73914643 TAAAAATACCTCAAC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAA
65 TGAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
73914706 AATAGAAATTG-AAAG-TAGCTCAGCACGTGAGCCA
130 AATAGAAATTGAAAAGATAGCTCAGCACGTGAGCCA
* *
73914740 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAGTAGAAATTGAAAAACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAAAACAGAAATT
* * *
73914805 GAAATTACCCCAACTTATGACCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAA
66 GAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
73914870 ATAGAAATTG-AAAG-TAGCTCAGCACATGAGCCA
131 ATAGAAATTGAAAAGATAGCTCAGCACGTGAGCCA
*
73914903 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTT-----G-A-AAA--G-----CAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAAAACAGAAATT
73914954 GAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAA
66 GAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-G-A
* * * * *
73915019 GAAACAGAAATTGAAAAATGGAATTTTGAAAATACCTCGGCATGTG-GCCCG
129 -AAATAGAAATTG---AA---AA----G---ATAGCTCAGCACGTGAG-CCA
* * *
73915070 AGGTTCAACTCATCTCTCACAATATGAGTTGATTTTTGAAAAGTATAAA-T-AAAAAC------T
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAAAACAGAAATT
* * * * *
73915127 GAAAATGCCTCAGCATGTGAGCC-AAGGCTCAACTCA-C-CTCGCAATATGAGTTGATTTTTGAA
66 GAAATTACCTCAGCTTATGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
* ** * * *
73915189 AATAGAGATTGAAAAGCAAAAATGAAAATTCATCAGCGT-ACCCTG
130 AATAGAAATTGAAAAG-----AT---AGCTCAGCA-CGTGAGCC-A
* *
73915234 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAATAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAAAACAGAAATT
* ** *
73915299 GAAATTACCTCAGCGTAT--CCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
66 GAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
73915362 A
131 A
73915363 ATAAAAACAT
Statistics
Matches: 519, Mismatches: 49, Indels: 99
0.78 0.07 0.15
Matches are distributed among these distances:
149 66 0.13
150 1 0.00
151 1 0.00
152 11 0.02
154 1 0.00
156 4 0.01
157 1 0.00
158 2 0.00
159 2 0.00
160 5 0.01
161 68 0.13
162 6 0.01
163 122 0.24
164 48 0.09
165 3 0.01
166 6 0.01
167 45 0.09
168 10 0.02
169 3 0.01
170 13 0.03
171 22 0.04
172 43 0.08
173 30 0.06
174 5 0.01
179 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (165 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAAAACAGAAATT
GAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
ATAGAAATTGAAAAGATAGCTCAGCACGTGAGCCA
Found at i:73914911 original size:74 final size:74
Alignment explanation
Indices: 73914793--73915034 Score: 306
Period size: 74 Copynumber: 3.2 Consensus size: 74
73914783 TAGAAATTGA
* * * ** * *
73914793 AAAACAGAAATTGAAATTACCCCAACTTATGACCTGAGGCTCAACTCACATCTCGCAATATGAGT
1 AAAACAGAAATTGAAAGTACCTCAGCACATGACCTAAGGCTCAACTCACCTCTCGCAATATGAGT
73914858 TGATTTTTG
66 TGATTTTTG
* * *
73914867 AAAATAGAAATTGAAAGTAGCTCAGCACATGAGCC-AAGGCTCAACTCACCTCTCGCAATGTGAG
1 AAAACAGAAATTGAAAGTACCTCAGCACATGA-CCTAAGGCTCAACTCACCTCTCGCAATATGAG
73914931 TTGATTTTTG
65 TTGATTTTTG
* ** *
73914941 AAAAGCAGAAATTGAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAAGTACCTCAGCACATGACCTAAGGCTCAACTCACCTCTCGCAATATGAG
73915006 TTGATTTTTGG
65 TTGATTTTT-G
73915017 AAGAAACAGAAATTGAAA
1 -A-AAACAGAAATTGAAA
73915035 AATGGAATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
74 67 0.46
75 61 0.42
76 1 0.01
77 13 0.09
78 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (74 bp):
AAAACAGAAATTGAAAGTACCTCAGCACATGACCTAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTG
Found at i:73914989 original size:75 final size:75
Alignment explanation
Indices: 73914789--73915034 Score: 352
Period size: 75 Copynumber: 3.3 Consensus size: 75
73914779 AAAGTAGAAA
* * *
73914789 TTGAAAAACAGAAATTGAAATTACCCCAACTTATGACCTGAGGCTCAACTCACATCTCGCAATAT
1 TTGAAAAACAGAAATTGAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATAT
73914854 GAGTTGATTT
66 GAGTTGATTT
* * * ** * *
73914864 TTG-AAAATAGAAATTGAAAGTAGCTCAGCACATGAGCC-AAGGCTCAACTCACCTCTCGCAATG
1 TTGAAAAACAGAAATTGAAATTACCTCAGCTTATGA-CCTGAGGCTCAACTCACCTCTCGCAATA
73914927 TGAGTTGATTT
65 TGAGTTGATTT
*
73914938 TTGAAAAGCAGAAATTGAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATAT
73915003 GAGTTGATTT
66 GAGTTGATTT
73915013 TTGGAAGAAACAGAAATTGAAA
1 TT-GAA-AAACAGAAATTGAAA
73915035 AATGGAATTT
Statistics
Matches: 147, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
74 63 0.43
75 67 0.46
76 3 0.02
77 14 0.10
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCTTATGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTT
Found at i:73915189 original size:79 final size:82
Alignment explanation
Indices: 73915045--73915362 Score: 253
Period size: 87 Copynumber: 3.8 Consensus size: 82
73915035 AATGGAATTT
* * * *
73915045 TGAAAATACCTCGGCATGTG-GCCCGAGGTTCAACTCATCTCTCACAATATGAGTTGATTTTTGA
1 TGAAAATACCTCAGCATGTGAG-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
73915109 AAAGTATAAATA-AAAAC
65 AAAGTATAAATACAAAAA
* *
73915126 TGAAAATGCCTCAGCATGTGAGCCAAGGCTCAACTCA-C-CTCGCAATATGAGTTGATTTTTGAA
1 TGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-A
*
73915189 AATAGAGATTGAAA-AGCAAAAA
65 AA-AG-TA-T-AAATA-CAAAAA
* * *
73915211 TGAAAATTCATCAGC--GT-ACCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 TGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* *
73915273 AAAATATAAATTGAAAAATAGAAA
65 AAAGTATAAA-T---ACA-A-AAA
* * ** *
73915297 TTGAAATTACCTCAGC--GT-ATCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 -TGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
73915359 AAAA
64 AAAA
73915363 ATAAAAACAT
Statistics
Matches: 197, Mismatches: 21, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
79 22 0.11
80 7 0.04
81 34 0.17
82 6 0.03
83 17 0.09
84 8 0.04
85 42 0.21
86 3 0.02
87 58 0.29
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28
Consensus pattern (82 bp):
TGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
AAGTATAAATACAAAAA
Found at i:73915288 original size:14 final size:14
Alignment explanation
Indices: 73915269--73915302 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
73915259 GAGTTGATTT
*
73915269 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
73915283 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
73915297 TTGAAA
1 TTGAAA
73915303 TTACCTCAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.26
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:73915330 original size:87 final size:85
Alignment explanation
Indices: 73915151--73915365 Score: 292
Period size: 87 Copynumber: 2.5 Consensus size: 85
73915141 ATGTGAGCCA
* *
73915151 AGGCTCAACTCAC-CTCGCAATATGAGTTGATTTTTG-AAAATAGAGATTGAAAAGCAAAAATGA
1 AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAACAAAAATGA
73915214 AAATTCATCAGCGTACCCTG
66 AAATTCATCAGCGTACCCTG
* * *
73915234 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAATAGAAATT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAACA-AAAAT
* *
73915299 G-AAATTACCTCAGCGTATCCTG
64 GAAAATT-CATCAGCGTACCCTG
* *
73915321 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAATA
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAATA
73915366 AAAACATCAA
Statistics
Matches: 117, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
83 12 0.10
84 1 0.01
85 23 0.20
86 21 0.18
87 60 0.51
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (85 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAACAAAAATGA
AAATTCATCAGCGTACCCTG
Found at i:73915956 original size:36 final size:36
Alignment explanation
Indices: 73915916--73915987 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
73915906 AAGAACAGTA
* *
73915916 AAAGGTATCATAAAGAGGAAGGGGATTGCATTCAAC
1 AAAGGTATCATAAAGAGGAAAGGGATCGCATTCAAC
73915952 AAAGGTATCATAAAGAGGAAAGGGATCGCATTCAAC
1 AAAGGTATCATAAAGAGGAAAGGGATCGCATTCAAC
73915988 GGCTACAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.43, C:0.12, G:0.26, T:0.18
Consensus pattern (36 bp):
AAAGGTATCATAAAGAGGAAAGGGATCGCATTCAAC
Found at i:73928371 original size:13 final size:15
Alignment explanation
Indices: 73928347--73928383 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
73928337 AAAATATAAT
*
73928347 AATAACATTAATA-A
1 AATAATATTAATATA
73928361 AAT-ATATTAATATA
1 AATAATATTAATATA
73928375 AATAATATT
1 AATAATATT
73928384 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 8 0.40
14 7 0.35
15 5 0.25
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
AATAATATTAATATA
Found at i:73928380 original size:22 final size:22
Alignment explanation
Indices: 73928337--73928381 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
73928327 AGAATACCAA
*
73928337 AAAATATAATAATAACATTAAT
1 AAAATATAATAATAACAATAAT
*
73928359 AAAATATATTAATATA-AATAAT
1 AAAATATAATAATA-ACAATAAT
73928381 A
1 A
73928382 TTGAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATATAATAATAACAATAAT
Found at i:73928985 original size:14 final size:15
Alignment explanation
Indices: 73928966--73928995 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73928956 GGTAAGTTTT
73928966 TTTATTT-TTTTATA
1 TTTATTTGTTTTATA
73928980 TTTATTTGTTTTATA
1 TTTATTTGTTTTATA
73928995 T
1 T
73928996 CTTTCTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTATTTGTTTTATA
Done.