Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 22 of 311
Found at i:6281786 original size:16 final size:16
Alignment explanation
Indices: 6281761--6281791 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6281751 TTTTTTTTTT
*
6281761 ATTTCTTTTCAATTTA
1 ATTTCGTTTCAATTTA
6281777 ATTTCGTTTCAATTT
1 ATTTCGTTTCAATTT
6281792 TTTCCAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.61
Consensus pattern (16 bp):
ATTTCGTTTCAATTTA
Found at i:6282105 original size:5 final size:5
Alignment explanation
Indices: 6282097--6282150 Score: 72
Period size: 5 Copynumber: 10.2 Consensus size: 5
6282087 TCTTTCCCTC
*
6282097 TAATT TAATT TAATT TCAATT TTATT TCCAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT T-AATT TAATT T--AATT TAATT TAATT TAATT
6282145 TAATT T
1 TAATT T
6282151 CTATTTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
5 35 0.80
6 5 0.11
7 4 0.09
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:6282133 original size:23 final size:22
Alignment explanation
Indices: 6282103--6282145 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
6282093 CCTCTAATTT
*
6282103 AATTTAATTTCAATTTTATTTCC
1 AATTTAATTT-AATTTAATTTCC
6282126 AATTTAATTTAATTTAATTT
1 AATTTAATTTAATTTAATTT
6282146 AATTTCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTTAATTTAATTTAATTTCC
Found at i:6282139 original size:38 final size:38
Alignment explanation
Indices: 6282097--6282175 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
6282087 TCTTTCCCTC
6282097 TAATTTAATTTAATTTC-AATTTTATTTCCAATTTAATT
1 TAATTTAATTTAATTTCTAATTTTATTTCC-ATTTAATT
* * *
6282135 TAATTTAATTTAATTTCTATTTTTATTTGCATTTCATT
1 TAATTTAATTTAATTTCTAATTTTATTTCCATTTAATT
6282173 TAA
1 TAA
6282176 ATCAAAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 27 0.73
39 10 0.27
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (38 bp):
TAATTTAATTTAATTTCTAATTTTATTTCCATTTAATT
Found at i:6282209 original size:21 final size:21
Alignment explanation
Indices: 6282183--6282226 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6282173 TAAATCAAAA
6282183 TTTTTGAAATTAAAAATTTAT
1 TTTTTGAAATTAAAAATTTAT
** *
6282204 TTTTTGCGATTTAAAATTTAT
1 TTTTTGAAATTAAAAATTTAT
6282225 TT
1 TT
6282227 CCATTAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTTTGAAATTAAAAATTTAT
Found at i:6282339 original size:15 final size:15
Alignment explanation
Indices: 6282321--6282391 Score: 62
Period size: 15 Copynumber: 4.8 Consensus size: 15
6282311 GTTTATATAT
6282321 ATTTATTTCATTTTA
1 ATTTATTTCATTTTA
6282336 ATTTATTTCA-TTTA
1 ATTTATTTCATTTTA
*
6282350 A--TATTTCCA-TTAA
1 ATTTATTT-CATTTTA
6282363 ATTT-TTTCATTTTA
1 ATTTATTTCATTTTA
6282377 TATTTTATTTTCATT
1 -A-TTTA-TTTCATT
6282392 AAAATTATCT
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
12 5 0.11
13 8 0.17
14 11 0.24
15 12 0.26
16 3 0.07
18 7 0.15
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTATTTCATTTTA
Found at i:6282659 original size:5 final size:5
Alignment explanation
Indices: 6282580--6282642 Score: 90
Period size: 5 Copynumber: 12.0 Consensus size: 5
6282570 CTTTCCCTCC
*
6282580 AATTT AATTT AATTT CAATTT CATTTCT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT -AATTT -AATT-T AATTT AATTT AATTT AATTT
6282628 AATTT AATTT AATTT
1 AATTT AATTT AATTT
6282643 CTATTTGCAT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
5 41 0.76
6 12 0.22
7 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (5 bp):
AATTT
Found at i:6282682 original size:21 final size:20
Alignment explanation
Indices: 6282656--6282704 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
6282646 TTTGCATTTC
6282656 ATTTAAATTAAATTTTTTGAA
1 ATTTAAATT-AATTTTTTGAA
* *
6282677 ATTTAACATTTATTTTTTGCA
1 ATTTAA-ATTAATTTTTTGAA
6282698 ATTTAAA
1 ATTTAAA
6282705 ATTTATTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
ATTTAAATTAATTTTTTGAA
Found at i:6282682 original size:48 final size:46
Alignment explanation
Indices: 6282580--6282670 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 46
6282570 CTTTCCCTCC
*
6282580 AATTTAATTTAATTTCAATTTCATTTCTAATTTAATTTAATTTAATTT
1 AATTTAATTTAATTTCAATTTCATTTC-AATTTAATTAAATTT-ATTT
*
6282628 AATTTAATTTAATTTCTATTTGCATTTC-ATTTAAATTAAATTT
1 AATTTAATTTAATTTCAATTT-CATTTCAATTT-AATTAAATTT
6282671 TTTGAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
47 4 0.10
48 29 0.74
49 6 0.15
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (46 bp):
AATTTAATTTAATTTCAATTTCATTTCAATTTAATTAAATTTATTT
Found at i:6282708 original size:21 final size:21
Alignment explanation
Indices: 6282667--6282712 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
6282657 TTTAAATTAA
*
6282667 ATTTTTTGAAATTTAACATTT
1 ATTTTTTGAAATTTAAAATTT
*
6282688 ATTTTTTGCAATTTAAAATTT
1 ATTTTTTGAAATTTAAAATTT
6282709 ATTT
1 ATTT
6282713 CCATTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTTTGAAATTTAAAATTT
Found at i:6282808 original size:482 final size:476
Alignment explanation
Indices: 6281867--6282879 Score: 1536
Period size: 482 Copynumber: 2.1 Consensus size: 476
6281857 ATTTAACATT
* * *
6281867 TATTTCTATTAATTTTTTTTTCATTTTATAATTT-TTTTCATT-AAATTATCTAGAATTTAAGTT
1 TATTTCCATTAA-ATTTTTTTCATTTTATATTTTATTTTCATTAAAATTATCTAGAATTTAAGTT
* * * * *
6281930 TTTTTATTTAAATTTTAATTTAATAGAAAAAGAAAAGTATAGTGTGGTCGGCCATTGATTTGGCC
65 TTTTTATTTAAACTTCAATTGAATAGAAAAAGAAAAGCATAGTGTGGCCGGCCATTGATTTGGCC
* * *
6281995 ACTAAAATTAATTTGGCAAGGCAAGCCTAGGCTTGACACGCAGGTCTGTTTGAGACATCACTTCA
130 ACTAAAATTAATTTGGCAAGGCAAGCCTAGGCCTGACACGCAGGCCTATTTGAGACATCACTTCA
* * *
6282060 CATTTTTTCACCTTTTTTTTTTTCATTTCTTTCCCTCTAATTTAATTTAATTTCAATTTTATTTC
195 CATTTTTTCACCATTTTTTTTTTCATTTCTTTCCCTCCAATTTAATTTAATTTCAATTTCATTTC
*
6282125 CAATTTAATTTAATTTAATTTAATTTCTATTTTTATTTGCATTTCATTTAAATCAAAATTTTTGA
260 CAATTTAATTTAATTTAATTTAATTTCTATTTCTATTTGCATTTCATTTAAATCAAAATTTTTGA
*
6282190 AATTAAAAATTTATTTTTTGCGATTTAAAATTTATTTCCATTAAAATTATCTATAATTTAAGTTT
325 AATTAAAAATTTATTTTTTGCAATTTAAAATTTATTTCCATTAAAATTATCTATAATTTAAGTTT
*
6282255 TTTTTATTTACTTTTTCATTCTTTTTTTGGTTCATTTAATTTTATCTATTATTTTAGTTTATATA
390 TTTTTATTTACTATTTCATTCTTTTTTTGGTTCATTTAATTTTATC-------TTAG-TTATATA
6282320 TATTTATTTCATTTTAATTTATTTCATTTAA
447 TATTTATTTCATTTTAATTT-TTTCATTTAA
6282351 TATTTCCATTAAA-TTTTTTCATTTTATATTTTATTTTCATTAAAATTATCTAGAATTTAAGTTT
1 TATTTCCATTAAATTTTTTTCATTTTATATTTTATTTTCATTAAAATTATCTAGAATTTAAGTTT
*
6282415 TTTTATTTAAACTTCAATTGAATAGAAAAA-AAAAGCATAGTGTGGCCGGCTATTGATTTGGCCA
66 TTTTATTTAAACTTCAATTGAATAGAAAAAGAAAAGCATAGTGTGGCCGGCCATTGATTTGGCCA
* * * *
6282479 TTAAAATTAATTTGGCAGGGCAGGCCTATGCCTGACACGCAGGCCTATTTGAGACATCACTTCAC
131 CTAAAATTAATTTGGCAAGGCAAGCCTAGGCCTGACACGCAGGCCTATTTGAGACATCACTTCAC
*
6282544 ATTTTTTCA-CATTTTTTTTTTCATTTCTTTCCCTCCAATTTAATTTAATTTCAATTTCATTTCT
196 ATTTTTTCACCATTTTTTTTTTCATTTCTTTCCCTCCAATTTAATTTAATTTCAATTTCATTTCC
* * *
6282608 AATTTAATTTAATTTAATTTAATTTAATTTAATTTCTATTTGCATTTCATTTAAATTAAATTTTT
261 AATTTAATTTAATTTAATTTAA-TT--TCT-ATTTCTATTTGCATTTCATTTAAATCAAAATTTT
* *
6282673 TGAAATTTAACATTTATTTTTTGCAATTTAAAATTTATTTCCATTAAAATTATCTATAATTTAAG
322 TGAAATTAAAAATTTATTTTTTGCAATTTAAAATTTATTTCCATTAAAATTATCTATAATTTAAG
6282738 TTTTTTTTTAAATTTACTATTTCATTCTTTATTTTTTGGTTCATTTAATTTTATC-TA-TTATAT
387 -TTTTTTTT--ATTTACTATTTCATTC--T-TTTTTTGGTTCATTTAATTTTATCTTAGTTATAT
6282801 ATATTTATTTCATTTTAATTTTTTCATTTAA
446 ATATTTATTTCATTTTAATTTTTTCATTTAA
*
6282832 TATTTCCATTAAATTTTTTTCATTTTATTTTTTATTTTCATTAAAATT
1 TATTTCCATTAAATTTTTTTCATTTTATATTTTATTTTCATTAAAATT
6282880 TTCATTTCAT
Statistics
Matches: 487, Mismatches: 29, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
481 23 0.05
482 151 0.31
483 108 0.22
484 62 0.13
485 2 0.00
486 93 0.19
487 8 0.02
489 15 0.03
491 1 0.00
492 24 0.05
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.53
Consensus pattern (476 bp):
TATTTCCATTAAATTTTTTTCATTTTATATTTTATTTTCATTAAAATTATCTAGAATTTAAGTTT
TTTTATTTAAACTTCAATTGAATAGAAAAAGAAAAGCATAGTGTGGCCGGCCATTGATTTGGCCA
CTAAAATTAATTTGGCAAGGCAAGCCTAGGCCTGACACGCAGGCCTATTTGAGACATCACTTCAC
ATTTTTTCACCATTTTTTTTTTCATTTCTTTCCCTCCAATTTAATTTAATTTCAATTTCATTTCC
AATTTAATTTAATTTAATTTAATTTCTATTTCTATTTGCATTTCATTTAAATCAAAATTTTTGAA
ATTAAAAATTTATTTTTTGCAATTTAAAATTTATTTCCATTAAAATTATCTATAATTTAAGTTTT
TTTTATTTACTATTTCATTCTTTTTTTGGTTCATTTAATTTTATCTTAGTTATATATATTTATTT
CATTTTAATTTTTTCATTTAA
Found at i:6282832 original size:13 final size:13
Alignment explanation
Indices: 6282803--6282868 Score: 62
Period size: 13 Copynumber: 4.9 Consensus size: 13
6282793 TATTATATAT
6282803 ATTTATTTCATTTTA
1 ATTT-TTTCA-TTTA
6282818 ATTTTTTCATTTA
1 ATTTTTTCATTTA
* * *
6282831 ATATTTCCATTAA
1 ATTTTTTCATTTA
*
6282844 ATTTTTTTCATTTT
1 A-TTTTTTCATTTA
6282858 ATTTTTT-ATTT
1 ATTTTTTCATTT
6282869 TCATTAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
12 4 0.09
13 21 0.49
14 14 0.33
15 4 0.09
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTTTTCATTTA
Found at i:6282841 original size:27 final size:26
Alignment explanation
Indices: 6282806--6282856 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
6282796 TATATATATT
*
6282806 TATTTCATTTTAA-TTTTTTCATTTAA
1 TATTTCA-TTAAATTTTTTTCATTTAA
6282832 TATTTCCATTAAATTTTTTTCATTT
1 TATTT-CATTAAATTTTTTTCATTT
6282857 TATTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (26 bp):
TATTTCATTAAATTTTTTTCATTTAA
Found at i:6282868 original size:32 final size:35
Alignment explanation
Indices: 6282832--6282902 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 35
6282822 TTTCATTTAA
*
6282832 TATTTCCATT-AAATTTT-TTTCA-TTTTATTTTT
1 TATTTCCATTAAAATTTTATTTCATTTTTATTATT
*
6282864 TATTTTCATTAAAATTTTCATTTCATTTTTATTATT
1 TATTTCCATTAAAATTTT-ATTTCATTTTTATTATT
6282900 TAT
1 TAT
6282903 ATTACATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 9 0.27
33 7 0.21
35 5 0.15
36 12 0.36
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.66
Consensus pattern (35 bp):
TATTTCCATTAAAATTTTATTTCATTTTTATTATT
Found at i:6286219 original size:54 final size:52
Alignment explanation
Indices: 6286073--6286225 Score: 182
Period size: 52 Copynumber: 2.9 Consensus size: 52
6286063 TATCATACCG
* * * * * * *
6286073 ATGCCATATCCCAGATATGGTCGTACACGGGAGCACTTATCACTT-TTCTCCG
1 ATGCCAAAGCCCAGCTATGGTCTTATAC-GGATCACTTATCACTTGTTCTCCA
*
6286125 ATGCCAAAGCCCAGCTATGGTCTTATACGGATCACTTATCACTTGTTTTCCA
1 ATGCCAAAGCCCAGCTATGGTCTTATACGGATCACTTATCACTTGTTCTCCA
* *
6286177 ATGCCATAGCCCAGCTATGGTCTTATATGGATATCACTTATCACTTGTT
1 ATGCCAAAGCCCAGCTATGGTCTTATACGG--ATCACTTATCACTTGTT
6286226 GCCATGGTCC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 15 0.17
52 56 0.64
54 17 0.19
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (52 bp):
ATGCCAAAGCCCAGCTATGGTCTTATACGGATCACTTATCACTTGTTCTCCA
Found at i:6289114 original size:55 final size:54
Alignment explanation
Indices: 6289052--6289237 Score: 156
Period size: 55 Copynumber: 3.3 Consensus size: 54
6289042 GGTCTTGGCT
* *
6289052 ATTAGAAGACCAGCACCAATTTTTTTTTTTTGGTATTTTTGTATTGGTGCCGGCC
1 ATTAGAAGACCAGCACCAA-ATTTTTTTTTTGATATTTTTGTATTGGTGCCGGCC
* * **** *** * **
6289107 ATTAGAAGGCCAACACCAAAAAAATTTTGAAATATTTTTTTACTACAGTGGTGTTGGCC
1 ATTAGAAGACCAGCACCAAATTTTTTTTTTGATATTTTTGTA-T----TGGTGCCGGCC
* * *
6289166 ATTAGAAGACCAGCACCAAAATTTTTTTTTTGATATTTTCGTACTGGTGCCGGGC
1 ATTAGAAGACCAGCACC-AAATTTTTTTTTTGATATTTTTGTATTGGTGCCGGCC
6289221 ATTAGAAGACCAGCACC
1 ATTAGAAGACCAGCACC
6289238 TAAAAAATTT
Statistics
Matches: 96, Mismatches: 29, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
54 13 0.14
55 43 0.45
59 24 0.25
60 16 0.17
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (54 bp):
ATTAGAAGACCAGCACCAAATTTTTTTTTTGATATTTTTGTATTGGTGCCGGCC
Found at i:6289172 original size:114 final size:114
Alignment explanation
Indices: 6289025--6289422 Score: 428
Period size: 114 Copynumber: 3.5 Consensus size: 114
6289015 AAAATTTATT
* ** * ** *
6289025 TTTTTTTTTACAAGTGTGGT-CTTGGCTATTAGAAGACCAGCACCAATTTTTTTTTTTTGGTATT
1 TTTTTTTTTACTACAGTGGTGC-TGGCCATTAGAAGACCAGCACCAAAATTTTTTTTTTGATATT
*
6289089 TTTGTATTGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAA
65 TTTGTACTGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAA
* *
6289139 TATTTTTTTACTACAGTGGTGTTGGCCATTAGAAGACCAGCACCAAAATTTTTTTTTTGATATTT
1 TTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACCAAAATTTTTTTTTTGATATTT
* * * * *
6289204 TCGTACTGGTGCCGGGCATTAGAAGACCAGCACCTAAAAAATTTT-AAA
66 TTGTACTGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAA
* * * ** **** *
6289252 TTTTTTTTTACTATAGTGGTGCCGGCCATTAGAAGGCCAGCAAAAAAAAAAAAATTTCTTGATAT
1 TTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGC--ACCAAAATTTTTTTTTTGATAT
** * * *
6289317 TTTTGTACTGGTGCTTGCCATTAGAA-GACAAGCACCCAAAAAATTTTGAAT
64 TTTTGTACTGGTGCCGGCCATTAGAAGGCCAA-CACCAAAAAAATTTTGAAA
* * *
6289368 TTTTTTTTTACTAGAGTGGTGCTAGCCATTAGAAGGCCAGCACC--AATTTTTTTTT
1 TTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACCAAAATTTTTTTTT
6289423 CAAATACTCG
Statistics
Matches: 233, Mismatches: 46, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
112 6 0.03
113 39 0.17
114 97 0.42
115 51 0.22
116 40 0.17
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (114 bp):
TTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACCAAAATTTTTTTTTTGATATTT
TTGTACTGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAA
Found at i:6289344 original size:115 final size:115
Alignment explanation
Indices: 6289085--6289409 Score: 402
Period size: 115 Copynumber: 2.8 Consensus size: 115
6289075 TTTTTTTTGG
* * * *
6289085 TATTTTTGTATTGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAATATTTTTTTAC
1 TATTTTTGTACTGGTGCCGGCCATTAGAAGACCAGCACCAAAAAAATTTTGAAATTTTTTTTTAC
* * ** **** *
6289150 TACAGTGGTGTTGGCCATTAGAAGACCAGC-ACCAAAATTTTTTTTTTGA
66 TACAGTGGTGCTGGCCATTAGAAGGCCAGCAAAAAAAAAAAATTTCTTGA
* * *
6289199 TATTTTCGTACTGGTGCCGGGCATTAGAAGACCAGCACCTAAAAAATTTT-AAATTTTTTTTTAC
1 TATTTTTGTACTGGTGCCGGCCATTAGAAGACCAGCACCAAAAAAATTTTGAAATTTTTTTTTAC
* *
6289263 TATAGTGGTGCCGGCCATTAGAAGGCCAGCAAAAAAAAAAAAATTTCTTGA
66 TACAGTGGTGCTGGCCATTAGAAGGCCAGC-AAAAAAAAAAAATTTCTTGA
** * * *
6289314 TATTTTTGTACTGGTGCTTGCCATTAGAAGACAAGCACCCAAAAAATTTTGAATTTTTTTTTTAC
1 TATTTTTGTACTGGTGCCGGCCATTAGAAGACCAGCACCAAAAAAATTTTGAAATTTTTTTTTAC
* *
6289379 TAGAGTGGTGCTAGCCATTAGAAGGCCAGCA
66 TACAGTGGTGCTGGCCATTAGAAGGCCAGCA
6289410 CCAATTTTTT
Statistics
Matches: 180, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
113 39 0.22
114 44 0.24
115 57 0.32
116 40 0.22
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (115 bp):
TATTTTTGTACTGGTGCCGGCCATTAGAAGACCAGCACCAAAAAAATTTTGAAATTTTTTTTTAC
TACAGTGGTGCTGGCCATTAGAAGGCCAGCAAAAAAAAAAAATTTCTTGA
Found at i:6289907 original size:31 final size:29
Alignment explanation
Indices: 6289865--6289935 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
6289855 CTACACTGCG
* *
6289865 AGTCACCCTAAAATGGTATTGTTT-CTATTTT
1 AGTCACTCTAAAAT--TATT-TTTACTAATTT
*
6289896 AGTCACTCTAAAATTATTTTTATTAATTT
1 AGTCACTCTAAAATTATTTTTACTAATTT
6289925 AGTCACTCTAA
1 AGTCACTCTAA
6289936 TTAATATAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 3 0.08
29 20 0.56
31 13 0.36
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.45
Consensus pattern (29 bp):
AGTCACTCTAAAATTATTTTTACTAATTT
Found at i:6290409 original size:29 final size:32
Alignment explanation
Indices: 6290367--6290432 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 32
6290357 TAATATAAAT
*
6290367 AAAATTACACTTTACTCCCTT-AAAATTATAA
1 AAAATTACACTTTAATCCCTTAAAAATTATAA
**
6290398 AAAATTA-A-TTTAATCTTTTAAAAATTATAA
1 AAAATTACACTTTAATCCCTTAAAAATTATAA
6290428 AAAAT
1 AAAAT
6290433 ATATACTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 8 0.26
30 16 0.52
31 7 0.23
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.38
Consensus pattern (32 bp):
AAAATTACACTTTAATCCCTTAAAAATTATAA
Found at i:6290449 original size:26 final size:30
Alignment explanation
Indices: 6290388--6290450 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
6290378 TTACTCCCTT
* *
6290388 AAAATTATAAAAAATTAATTTAATCTTTTA
1 AAAATTATAAAAAATTAATATAATCTATTA
6290418 AAAATTATAAAAAA-T-ATAT-A-CTATTA
1 AAAATTATAAAAAATTAATATAATCTATTA
6290444 AAAATTA
1 AAAATTA
6290451 AAATTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 12 0.39
27 1 0.03
28 3 0.10
29 1 0.03
30 14 0.45
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATTATAAAAAATTAATATAATCTATTA
Found at i:6294347 original size:26 final size:26
Alignment explanation
Indices: 6294318--6294373 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6294308 TGATAAAAAT
6294318 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6294344 TGATAATGGGTTAGGTAAATGTTCCC
1 TGATAATGGGTTAGGTAAATGTTCCA
6294370 TGAT
1 TGAT
6294374 GGGCATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6296013 original size:27 final size:27
Alignment explanation
Indices: 6295973--6296059 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
6295963 AGGAAGCGTC
*
6295973 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
6296000 CTGGTGGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
6296027 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
6296054 CTGGTG
1 CTGGTG
6296060 ACTTCGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
26 8 0.15
27 43 0.83
28 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:6296070 original size:27 final size:26
Alignment explanation
Indices: 6295973--6296077 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 26
6295963 AGGAAGCGTC
* * *
6295973 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
6296000 CTGGTGGCTCTGCCATATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
6296027 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
6296054 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
6296078 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.13
27 59 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:6301767 original size:20 final size:20
Alignment explanation
Indices: 6301723--6301760 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6301713 CAACCCAAAG
*
6301723 ATTTTTTTAATTTTTTTCGT
1 ATTTTTTTAATTTTTTACGT
6301743 ATTTTTTTAATTTTTTAC
1 ATTTTTTTAATTTTTTAC
6301761 TTTTTTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (20 bp):
ATTTTTTTAATTTTTTACGT
Found at i:6302927 original size:14 final size:14
Alignment explanation
Indices: 6302888--6302920 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6302878 AATATAAAAC
*
6302888 AAATAAATTAAATT
1 AAATAAATTAAAGT
6302902 AAATAAATTAAAGT
1 AAATAAATTAAAGT
6302916 AAATA
1 AAATA
6302921 GAATAAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (14 bp):
AAATAAATTAAAGT
Found at i:6303975 original size:27 final size:27
Alignment explanation
Indices: 6303937--6304006 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
6303927 ATGCCTTATT
*
6303937 GTGTGTTTGGGAGGATATGA-TATACTG
1 GTGTGTTTGGGAGGATAT-ATTATACTA
*
6303964 GTGTGTTTGGGAGGCTATATTATACTA
1 GTGTGTTTGGGAGGATATATTATACTA
6303991 GTGTGTTAT-GGAGGAT
1 GTGTGTT-TGGGAGGAT
6304007 TTATAATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.21, C:0.04, G:0.36, T:0.39
Consensus pattern (27 bp):
GTGTGTTTGGGAGGATATATTATACTA
Found at i:6309228 original size:18 final size:17
Alignment explanation
Indices: 6309201--6309234 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6309191 ATGTATTTTG
*
6309201 AAATTAAAAAATATGTT
1 AAATTAAAAAAAATGTT
6309218 AAATATAAAAAAAATGT
1 AAAT-TAAAAAAAATGT
6309235 GATTTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AAATTAAAAAAAATGTT
Found at i:6311167 original size:10 final size:10
Alignment explanation
Indices: 6311148--6311219 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
6311138 TTCATATTTT
*
6311148 AAATTTTAAA
1 AAATTATAAA
6311158 AAATTATAAA
1 AAATTATAAA
* *
6311168 AATTTCAAAAA
1 AAATT-ATAAA
6311179 AAATTA-AAA
1 AAATTATAAA
*
6311188 ATA-TATAAA
1 AAATTATAAA
6311197 GAAAGTT-TAAA
1 -AAA-TTATAAA
*
6311208 AAATTTTAAA
1 AAATTATAAA
6311218 AA
1 AA
6311220 TTTCTAGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
8 2 0.04
9 10 0.20
10 25 0.50
11 12 0.24
12 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (10 bp):
AAATTATAAA
Found at i:6314154 original size:15 final size:15
Alignment explanation
Indices: 6314134--6314194 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
6314124 TGATTTTATG
6314134 TATTATATTTTATAT
1 TATTATATTTTATAT
6314149 TATTAT-TTACTTATAT
1 TATTATATT--TTATAT
*
6314165 T-TTATTATATTATAT
1 TATTA-TATTTTATAT
6314180 TACTTCATATTTTAT
1 TA-TT-ATATTTTAT
6314195 CATATTAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
14 2 0.05
15 16 0.43
16 8 0.22
17 10 0.27
18 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATATTTTATAT
Found at i:6314189 original size:25 final size:23
Alignment explanation
Indices: 6314137--6314249 Score: 87
Period size: 24 Copynumber: 4.9 Consensus size: 23
6314127 TTTTATGTAT
6314137 TATATTTTA-TATTATTAT-TTAC
1 TATATTTTATTA-TATTATATTAC
6314159 TTATATTTTATTATATTATATTAC
1 -TATATTTTATTATATTATATTAC
*
6314183 TTCATATTTTATCATATTA-A-TA-
1 -T-ATATTTTATTATATTATATTAC
**
6314205 TATATTTTAACATA-TATCATTAC
1 TATATTTTATTATATTAT-ATTAC
6314228 TCAT-TATTTATTATATTATATT
1 T-ATAT-TTTATTATATTATATT
6314250 TTCATCACAT
Statistics
Matches: 76, Mismatches: 4, Indels: 19
0.77 0.04 0.19
Matches are distributed among these distances:
19 2 0.03
20 12 0.16
21 2 0.03
22 2 0.03
23 19 0.25
24 21 0.28
25 18 0.24
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (23 bp):
TATATTTTATTATATTATATTAC
Found at i:6314308 original size:42 final size:41
Alignment explanation
Indices: 6314196--6314317 Score: 103
Period size: 42 Copynumber: 3.0 Consensus size: 41
6314186 ATATTTTATC
* * *
6314196 ATATTAATATATATTTTAAC-ATATATCA-TTACTCATTA-TT
1 ATATTATTTTATATTTTAACAATATATTATTTA-T-ATTATTT
* *
6314236 -TATTATATTATATTTTCATCACATA-A-TATTTATATATATTT
1 ATATTATTTTATATTTT-AACA-ATATATTATTTATAT-TATTT
6314277 ATATTATTTTATATTTTAACAATATATTATTTCATATTATT
1 ATATTATTTTATATTTTAACAATATATTATTT-ATATTATT
6314318 ATTATCTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
39 15 0.23
40 9 0.14
41 10 0.15
42 27 0.42
43 4 0.06
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (41 bp):
ATATTATTTTATATTTTAACAATATATTATTTATATTATTT
Found at i:6314320 original size:16 final size:16
Alignment explanation
Indices: 6314301--6314375 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 16
6314291 TTTAACAATA
6314301 TATTATTTCATATTAT
1 TATTATTTCATATTAT
* *
6314317 TATTATCTAATA-TA-
1 TATTATTTCATATTAT
* *
6314331 TATTTTTTCATGTATAT
1 TATTATTTCATAT-TAT
*
6314348 TATTA-TTCACATTAT
1 TATTATTTCATATTAT
6314363 TA-T-TTTCATATTA
1 TATTATTTCATATTA
6314376 AATTGATATT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
14 17 0.38
15 7 0.16
16 17 0.38
17 4 0.09
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:6314334 original size:30 final size:29
Alignment explanation
Indices: 6314288--6314375 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
6314278 TATTATTTTA
6314288 TATT-TTAACAATATATTATTTCATATTAT
1 TATTATTAAC-ATATATTATTTCATATTAT
* * *
6314317 TATTATCTAATATATATTTTTTCATGTATAT
1 TATTAT-TAACATATATTATTTCATAT-TAT
*
6314348 TATTATTCACAT-TATTATTTTCATATTA
1 TATTATTAACATATATTA-TTTCATATTA
6314376 AATTGATATT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 10 0.21
30 26 0.54
31 12 0.25
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (29 bp):
TATTATTAACATATATTATTTCATATTAT
Found at i:6314519 original size:21 final size:22
Alignment explanation
Indices: 6314485--6314528 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6314475 TATTTCAAAA
*
6314485 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
6314506 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
6314528 T
1 T
6314529 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:6318607 original size:21 final size:21
Alignment explanation
Indices: 6318581--6318631 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
6318571 CCTCAAAACA
*
6318581 GTTGGAGGATCGTTGCAAGTG
1 GTTGGAGGATCATTGCAAGTG
6318602 GTTGGAGGATCATTGCAAGTG
1 GTTGGAGGATCATTGCAAGTG
*
6318623 GTTAGAGGA
1 GTTGGAGGA
6318632 GAATTTTAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.08, G:0.41, T:0.27
Consensus pattern (21 bp):
GTTGGAGGATCATTGCAAGTG
Found at i:6326505 original size:206 final size:205
Alignment explanation
Indices: 6326143--6326698 Score: 860
Period size: 206 Copynumber: 2.7 Consensus size: 205
6326133 GCAGATCTGG
6326143 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA-ACATAGCT
* * *
6326208 GATTTGGCTTTTATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
64 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
6326273 AGAACAAATTGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAGATACATAGCAGATCTGACCTT
129 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAAACACATAGCAGATCTAACCTT
* *
6326338 CAGATGTTTATA
194 CAGATGATTAGA
* *
6326350 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAA-CATAGCTG
* * *
6326415 ATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAAATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
** *
6326480 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACCCATAGCAGATCTAACCTTC
130 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAAACACATAGCAGATCTAACCTTC
6326545 AGATGATTAGA
195 AGATGATTAGA
* * * *
6326556 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTATAAGGAGCAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA-ACATAGCTG
* * *
6326621 ATTTGGTTTTCGCATGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
6326686 GAACAAATCGAAG
130 GAACAAATCGAAG
6326699 AAGCAGATTT
Statistics
Matches: 318, Mismatches: 29, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
205 1 0.00
206 309 0.97
207 8 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAACATAGCTGA
TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAAACACATAGCAGATCTAACCTTCA
GATGATTAGA
Found at i:6328449 original size:15 final size:15
Alignment explanation
Indices: 6328429--6328487 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
6328419 TGATTTTATG
6328429 TATTATATTTTATAT
1 TATTATATTTTATAT
6328444 TATTAT-TTACTTATAT
1 TATTATATT--TTATAT
*
6328460 T-TTATTATATTATAT
1 TATTA-TATTTTATAT
6328475 TACTTCATATTTT
1 TA-TT-ATATTTT
6328488 TATCATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
14 2 0.06
15 16 0.46
16 8 0.23
17 8 0.23
18 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATATTTTATAT
Found at i:6328461 original size:23 final size:24
Alignment explanation
Indices: 6328431--6328545 Score: 93
Period size: 24 Copynumber: 4.9 Consensus size: 24
6328421 ATTTTATGTA
6328431 TTATATTTTA-TATTATTAT-TTAC
1 TTATATTTTATTA-TATTATATTAC
6328454 TTATATTTTATTATATTATATTAC
1 TTATATTTTATTATATTATATTAC
*
6328478 TTCATATTTTTATCATATTA-A-TA-
1 TT-ATA-TTTTATTATATTATATTAC
**
6328501 -TATATTTTAACATA-TATCATTAC
1 TTATATTTTATTATATTAT-ATTAC
*
6328524 TCAT-TATTTATTATATTATATT
1 TTATAT-TTTATTATATTATATT
6328546 TTCATCACAT
Statistics
Matches: 76, Mismatches: 5, Indels: 21
0.75 0.05 0.21
Matches are distributed among these distances:
19 2 0.03
20 9 0.12
21 4 0.05
22 3 0.04
23 17 0.22
24 22 0.29
25 7 0.09
26 12 0.16
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATATTTTATTATATTATATTAC
Found at i:6328467 original size:26 final size:26
Alignment explanation
Indices: 6328438--6328497 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
6328428 GTATTATATT
6328438 TTATATTATTATTTACTT-ATA-TTTTA
1 TTATATTA-TA-TTACTTCATATTTTTA
6328464 TTATATTATATTACTTCATATTTTTA
1 TTATATTATATTACTTCATATTTTTA
*
6328490 TCATATTA
1 TTATATTA
6328498 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 6 0.19
25 5 0.16
26 20 0.65
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATATTATATTACTTCATATTTTTA
Found at i:6328523 original size:46 final size:44
Alignment explanation
Indices: 6328455--6328541 Score: 104
Period size: 46 Copynumber: 1.9 Consensus size: 44
6328445 ATTATTTACT
** *
6328455 TATATTTTATTATATTATATTACTTCATATTTTTATCATATTAATA
1 TATATTTTAACATATTATATTAC-TCAT-TATTTATCATATTAATA
*
6328501 TATATTTTAACATA-TATCATTACTCATTATTTATTATATTA
1 TATATTTTAACATATTAT-ATTACTCATTATTTATCATATTA
6328542 TATTTTCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.33
45 7 0.19
46 17 0.47
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (44 bp):
TATATTTTAACATATTATATTACTCATTATTTATCATATTAATA
Found at i:6328587 original size:10 final size:11
Alignment explanation
Indices: 6328429--6328587 Score: 51
Period size: 10 Copynumber: 13.4 Consensus size: 11
6328419 TGATTTTATG
6328429 TATTATATTTTA
1 TATTATA-TTTA
6328441 TATTATTATTTA
1 TATTA-TATTTA
*
6328453 -CTTATATTT-
1 TATTATATTTA
6328462 TATTATATTATA
1 TATTATATT-TA
*
6328474 TTACTTCATATTTT
1 -TA-TT-ATATTTA
* *
6328488 TATCATATTAA
1 TATTATATTTA
6328499 TA-TATATTT-
1 TATTATATTTA
*
6328508 TAACATATATCATTA
1 T-A-TTATAT--TTA
*
6328523 CTCATTATTTATTA
1 -T-ATTATAT-TTA
6328537 TATTATATTTTCA
1 TATTATA-TTT-A
*
6328550 TCACATAATATTTA
1 T---ATTATATTTA
6328564 TA-TATATTTA
1 TATTATATTTA
6328574 TATTAT-TTTA
1 TATTATATTTA
6328584 TATT
1 TATT
6328588 TTGACAATAT
Statistics
Matches: 113, Mismatches: 14, Indels: 42
0.67 0.08 0.25
Matches are distributed among these distances:
9 1 0.01
10 35 0.31
11 15 0.13
12 22 0.19
13 10 0.09
14 11 0.10
15 12 0.11
16 7 0.06
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (11 bp):
TATTATATTTA
Found at i:6328604 original size:42 final size:42
Alignment explanation
Indices: 6328532--6328613 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
6328522 ACTCATTATT
6328532 TATTATATTATATTTTCATCACATAATATTT-ATATATATTTA
1 TATTATATTATATTTTCATCACATAATATTTCATAT-TATTTA
* *
6328574 TATTATTTTATATTTTGA-CA-ATATATTATTTCATATTATT
1 TATTATATTATATTTTCATCACATA-A-TATTTCATATTATT
6328614 ATTATCTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
40 3 0.09
41 3 0.09
42 25 0.71
43 4 0.11
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.57
Consensus pattern (42 bp):
TATTATATTATATTTTCATCACATAATATTTCATATTATTTA
Found at i:6328616 original size:16 final size:16
Alignment explanation
Indices: 6328597--6328671 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 16
6328587 TTTGACAATA
6328597 TATTATTTCATATTAT
1 TATTATTTCATATTAT
* *
6328613 TATTATCTAATA-TA-
1 TATTATTTCATATTAT
* *
6328627 TATTTTTTCATGTATAT
1 TATTATTTCATAT-TAT
*
6328644 TATTA-TTCACATTAT
1 TATTATTTCATATTAT
6328659 TA-T-TTTCATATTA
1 TATTATTTCATATTA
6328672 AATTGATATT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
14 17 0.38
15 7 0.16
16 17 0.38
17 4 0.09
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:6328617 original size:39 final size:39
Alignment explanation
Indices: 6328434--6328618 Score: 101
Period size: 39 Copynumber: 4.5 Consensus size: 39
6328424 TTATGTATTA
* * *
6328434 TATTTTATATTATTATT-TACTTATATTTTATTATATTATAT
1 TATTTCATATTATTATTATA-TTATATTTTA--ACAATATAT
* *
6328475 TACTTCATATTTTTATCATATTAATATATATTTTAAC-ATATAT
1 TATTTCATATTATTAT--TA-T-AT-TATATTTTAACAATATAT
* * *
6328518 CATTAC-TCATTATTTATTATATTATATTTTCATCACATAATATT
1 TATTTCAT-ATTA-TTATTATATTATATTTT-AACA-AT-ATA-T
* * *
6328562 TATAT-ATATT-TATATTATTTTATATTTTGACAATATAT
1 TATTTCATATTAT-TATTATATTATATTTTAACAATATAT
6328600 TATTTCATATTATTATTAT
1 TATTTCATATTATTATTAT
6328619 CTAATATATA
Statistics
Matches: 110, Mismatches: 17, Indels: 36
0.67 0.10 0.22
Matches are distributed among these distances:
38 5 0.05
39 22 0.20
40 7 0.06
41 17 0.15
42 20 0.18
43 18 0.16
44 9 0.08
45 2 0.02
46 10 0.09
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.58
Consensus pattern (39 bp):
TATTTCATATTATTATTATATTATATTTTAACAATATAT
Found at i:6328630 original size:30 final size:29
Alignment explanation
Indices: 6328594--6328671 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 29
6328584 TATTTTGACA
*
6328594 ATATATTATTTCATATTATTATTATCTAAT
1 ATATATTATTTCATATTATTATTAT-TAAC
* * *
6328624 ATATATTTTTTCATGTATATTATTATTCAC
1 ATATATTATTTCATAT-TATTATTATTAAC
6328654 AT-TATTATTTTCATATTA
1 ATATATTA-TTTCATATTA
6328672 AATTGATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 6 0.15
30 25 0.62
31 9 0.22
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (29 bp):
ATATATTATTTCATATTATTATTATTAAC
Found at i:6328819 original size:21 final size:22
Alignment explanation
Indices: 6328785--6328828 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6328775 TATTTCAAAA
*
6328785 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
6328806 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
6328828 T
1 T
6328829 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:6332494 original size:20 final size:20
Alignment explanation
Indices: 6332469--6332513 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
6332459 TTCGCGGGAG
6332469 TGTGCTCTCTGAAATGGAAA
1 TGTGCTCTCTGAAATGGAAA
6332489 TGTGCTCTCTGAAATGGAAA
1 TGTGCTCTCTGAAATGGAAA
6332509 TGTGC
1 TGTGC
6332514 GCACATGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (20 bp):
TGTGCTCTCTGAAATGGAAA
Found at i:6333070 original size:23 final size:23
Alignment explanation
Indices: 6333044--6333088 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6333034 TGGGTATGTG
*
6333044 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
6333067 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
6333089 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:6335332 original size:22 final size:23
Alignment explanation
Indices: 6335284--6335333 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
6335274 TAAAGGTTAT
* *
6335284 GTTTTTTTTTTCAATGATAGTAG
1 GTTTTTTTTATCAATGATAGTAA
* *
6335307 GTTTTTTTTAT-AATTATATTAA
1 GTTTTTTTTATCAATGATAGTAA
6335329 GTTTT
1 GTTTT
6335334 GATTAAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.62
Consensus pattern (23 bp):
GTTTTTTTTATCAATGATAGTAA
Found at i:6345720 original size:20 final size:20
Alignment explanation
Indices: 6345697--6345744 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
6345687 TAAATATAGA
6345697 TTTTAAATTATAATTATT-TT
1 TTTTAAATT-TAATTATTATT
* * *
6345717 TTTTACATTTTATTCTTATT
1 TTTTAAATTTAATTATTATT
6345737 TTTTAAAT
1 TTTTAAAT
6345745 ATTTCACATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTAAATTTAATTATTATT
Found at i:6345825 original size:20 final size:20
Alignment explanation
Indices: 6345797--6345835 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
6345787 TTTGTATATG
*
6345797 ATAATATAATATT-AAAATAA
1 ATAAAATAA-ATTGAAAATAA
6345817 ATAAAATAAATTGAAAATA
1 ATAAAATAAATTGAAAATA
6345836 TTTTCTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
ATAAAATAAATTGAAAATAA
Found at i:6348270 original size:27 final size:27
Alignment explanation
Indices: 6348230--6348291 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
6348220 TTAATCTTAT
* **
6348230 TCAACC-GATTTGTATCGCCTCACGGA
1 TCAACCAGTTTTGTATCGCCTCACAAA
*
6348256 TCAACCAGTTTTGTATCGGCTCACAAA
1 TCAACCAGTTTTGTATCGCCTCACAAA
6348283 TCAACCAGT
1 TCAACCAGT
6348292 CTAATGCCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
TCAACCAGTTTTGTATCGCCTCACAAA
Found at i:6349404 original size:29 final size:31
Alignment explanation
Indices: 6349346--6349405 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 31
6349336 TACGTTACCT
* *
6349346 TATTTATTGAAATAAAAAAAATGAATGAAAA
1 TATTTATTGAAATAAAAAAAATAAAAGAAAA
6349377 TATTT-TT-AAAT-AAAAAAATAAAAAGAAAA
1 TATTTATTGAAATAAAAAAAAT-AAAAGAAAA
6349406 CTAATATCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 8 0.31
29 11 0.42
30 2 0.08
31 5 0.19
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (31 bp):
TATTTATTGAAATAAAAAAAATAAAAGAAAA
Found at i:6349790 original size:25 final size:26
Alignment explanation
Indices: 6349760--6349829 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 26
6349750 TATACATAGT
*
6349760 ATTAAAAATATGTACATAATAT-GGC
1 ATTAAAAATATATACATAATATAGGC
* * **
6349785 GTTAAAAATACATACATAATATAGTT
1 ATTAAAAATATATACATAATATAGGC
6349811 ATTAAAAATATATACATAA
1 ATTAAAAATATATACATAA
6349830 AATAATATGT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 19 0.51
26 18 0.49
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (26 bp):
ATTAAAAATATATACATAATATAGGC
Found at i:6349815 original size:26 final size:25
Alignment explanation
Indices: 6349700--6349896 Score: 121
Period size: 26 Copynumber: 8.1 Consensus size: 25
6349690 CGATATATAA
6349700 ATATACAT-ATAT-GTATT-AAAAT
1 ATATACATAATATAGTATTAAAAAT
** *
6349722 ATATACATAATAATAAAAGTAAAAAGT
1 ATATACATAAT-ATAGTATTAAAAA-T
*
6349749 GTATAC-----ATAGTATTAAAAAT
1 ATATACATAATATAGTATTAAAAAT
* * **
6349769 ATGTACATAATATGGCGTTAAAAAT
1 ATATACATAATATAGTATTAAAAAT
*
6349794 ACATACATAATATAGTTATTAAAAAT
1 ATATACATAATATAG-TATTAAAAAT
* *
6349820 ATATACATAAAATAATATGTAAAAA-
1 ATATACATAATATAGTAT-TAAAAAT
* *
6349845 A-AT--GTAATATAGTATTAGAAAT
1 ATATACATAATATAGTATTAAAAAT
* *
6349867 ATACACAATATATATGGTATTAAAAAT
1 ATATAC-ATA-ATATAGTATTAAAAAT
6349894 ATA
1 ATA
6349897 GTATTAAATA
Statistics
Matches: 129, Mismatches: 28, Indels: 31
0.69 0.15 0.16
Matches are distributed among these distances:
20 5 0.04
21 15 0.12
22 18 0.14
23 3 0.02
24 4 0.03
25 29 0.22
26 32 0.25
27 23 0.18
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (25 bp):
ATATACATAATATAGTATTAAAAAT
Found at i:6349900 original size:14 final size:16
Alignment explanation
Indices: 6349873--6349918 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
6349863 AAATATACAC
* *
6349873 AATATATATGGTATTA
1 AATACATATAGTATTA
6349889 AA-A-ATATAGTATTA
1 AATACATATAGTATTA
6349903 AATACATATAAGTATT
1 AATACATAT-AGTATT
6349919 GATTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 12 0.46
15 2 0.08
16 6 0.23
17 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (16 bp):
AATACATATAGTATTA
Found at i:6350437 original size:6 final size:6
Alignment explanation
Indices: 6350426--6350515 Score: 50
Period size: 6 Copynumber: 15.5 Consensus size: 6
6350416 GTTAAGTAAA
** *
6350426 AATAAT AATAAT GCTAAT AAATAAT AA-ATAT AATAAT AATAGT AATAA-
1 AATAAT AATAAT AATAAT -AATAAT AATA-AT AATAAT AATAAT AATAAT
* *
6350474 AAT-AT AATAGT -ATACAT AATATT AA-AATT AA-AAT AA-AAT AAT
1 AATAAT AATAAT AATA-AT AATAAT AATAA-T AATAAT AATAAT AAT
6350516 GAGAAAAAGT
Statistics
Matches: 65, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
4 1 0.02
5 19 0.29
6 37 0.57
7 8 0.12
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (6 bp):
AATAAT
Found at i:6350458 original size:22 final size:22
Alignment explanation
Indices: 6350395--6350481 Score: 56
Period size: 22 Copynumber: 4.0 Consensus size: 22
6350385 ATAAAACTAT
* *
6350395 ATAATACAT-ATACATATAAGTG
1 ATAATAAATAATAAATATAA-TG
*
6350417 TTAAGTAAA-AAT-AATAATAATG
1 ATAA-TAAATAATAAAT-ATAATG
* *
6350439 CTAATAAATAATAAATATAATA
1 ATAATAAATAATAAATATAATG
*
6350461 ATAAT-AGTAATAAAATATAAT
1 ATAATAAATAAT-AAATATAAT
6350482 AGTATACATA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
21 9 0.17
22 31 0.60
23 12 0.23
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (22 bp):
ATAATAAATAATAAATATAATG
Found at i:6350493 original size:22 final size:22
Alignment explanation
Indices: 6350440--6350515 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
6350430 ATAATAATGC
6350440 TAATAAATAAT-AAATATAATAA
1 TAAT-AATAATAAAATATAATAA
*
6350462 TAATAGTAATAAAATATAATAGTA
1 TAATAATAATAAAATATAATA--A
*
6350486 TACATAATATTAAAAT-TAA-AA
1 TA-ATAATAATAAAATATAATAA
6350507 TAA-AATAAT
1 TAATAATAAT
6350516 GAGAAAAAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
19 5 0.11
20 1 0.02
21 8 0.17
22 14 0.30
23 1 0.02
24 6 0.13
25 11 0.24
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (22 bp):
TAATAATAATAAAATATAATAA
Found at i:6356744 original size:40 final size:40
Alignment explanation
Indices: 6356687--6356850 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
6356677 CTAACGGGGT
* * * *
6356687 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
6356727 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
*
6356767 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* *
6356807 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
6356847 TAAG
1 TAAG
6356851 ATCCGATGGC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.02
40 111 0.98
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:6366966 original size:58 final size:58
Alignment explanation
Indices: 6366789--6366968 Score: 247
Period size: 58 Copynumber: 3.1 Consensus size: 58
6366779 TTATTGTCAT
* * * ** * * *
6366789 TTTTTATTTTTATTTTGGAGAAAACCA-CACTTGTTTCAAAATGATTC-CATTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCATAAC-CATTTCCAAATGTTTCTCACTTCTCCA
* *
6366846 TTTTTATTTTCATTTTAGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
6366904 TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
6366962 TTTTCAT
1 TTTTCAT
6366969 CATTTCTGTT
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
57 37 0.33
58 74 0.67
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (58 bp):
TTTTCATTTTCATTTTGGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
Found at i:6370430 original size:5 final size:5
Alignment explanation
Indices: 6370411--6370525 Score: 66
Period size: 5 Copynumber: 23.6 Consensus size: 5
6370401 TAATGTAAAT
* *
6370411 TATAA TATAA -A-AA TATAA TATAA TGT-A TATAA TATAA TATAA -AAAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * *
6370457 TATCA TGAT-A TATAG TAAAA TATAA TATGTAA TA-AA TAT-A TAAAAA
1 TATAA T-ATAA TATAA TATAA TATAA TA--TAA TATAA TATAA T-ATAA
*
6370503 TAGAA TATAA TGA-AA TATAA TAT
1 TATAA TATAA T-ATAA TATAA TAT
6370526 GATAAGGGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
3 2 0.02
4 17 0.20
5 56 0.66
6 5 0.06
7 5 0.06
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (5 bp):
TATAA
Found at i:6370452 original size:32 final size:30
Alignment explanation
Indices: 6370387--6370484 Score: 117
Period size: 30 Copynumber: 3.1 Consensus size: 30
6370377 TAATTTACAA
*
6370387 ATAAAAATATATGATAATGTAAATTATAAT
1 ATAAAAATATATGATAATGTAAAATATAAT
6370417 ATAAAAATATAAT-ATAATGTATATAATATAAT
1 ATAAAAATAT-ATGATAATGTA-A-AATATAAT
6370449 ATAAAAAATATCATGATATATAGTAAAATATAAT
1 AT-AAAAATAT-ATGATA-AT-GTAAAATATAAT
6370483 AT
1 AT
6370485 GTAATAAATA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.31
31 3 0.05
32 9 0.15
33 10 0.17
34 13 0.22
35 3 0.05
36 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (30 bp):
ATAAAAATATATGATAATGTAAAATATAAT
Found at i:6370459 original size:19 final size:19
Alignment explanation
Indices: 6370422--6370484 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
6370412 ATAATATAAA
***
6370422 AATATAATATAATGTATAT
1 AATATAATATAAAAAATAT
6370441 AATATAATATAAAAAATAT
1 AATATAATATAAAAAATAT
* *
6370460 CATGAT-ATATAGTAAAATAT
1 AAT-ATAATATA-AAAAATAT
6370480 AATAT
1 AATAT
6370485 GTAATAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 25 0.69
20 11 0.31
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (19 bp):
AATATAATATAAAAAATAT
Found at i:6372419 original size:43 final size:44
Alignment explanation
Indices: 6372306--6372433 Score: 177
Period size: 44 Copynumber: 2.9 Consensus size: 44
6372296 GCCATGTTGA
* *
6372306 TATCTTTGATTTGCTCCCTGACAATACAAGGATGTCAAATCTGC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGTCAAATCTGC
* * * * *
6372350 TATCTTCGATCTGCTCTCTGATAATACAAAGATGCCAAATTTGC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGTCAAATCTGC
*
6372394 T-TCTTCGATTTGTTCCCTGACAATACAAAGATGTCAAATC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGTCAAATC
6372434 ATCTTAGATT
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 33 0.46
44 38 0.54
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TATCTTCGATTTGCTCCCTGACAATACAAAGATGTCAAATCTGC
Found at i:6372568 original size:87 final size:87
Alignment explanation
Indices: 6372395--6372922 Score: 244
Period size: 87 Copynumber: 6.0 Consensus size: 87
6372385 CAAATTTGCT
* * * * * * ***
6372395 TCTTCGATTTGTTCCCTG-ACAATACAAAGATGTCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATTTGTTCCTTGTA-AACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
* *
6372459 A-CGTGAAAGCCAAATCTGCTATG
65 ATC-TGAAAGTCAGATCTGCTATG
6372482 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* * * *
6372547 GCTGAAGGTTAGATCTACTATG
66 TCTGAAAGTCAGATCTGCTATG
* * * * * * * *** * *
6372569 T-GTCTGCTTTCCG-TCGAGTATGGAGACGCCA-GAT---TTGTTATCTTGGATCTGCTTTGATG
1 TCTTC-GATTT--GTTC--CT-TGTAAACACAAGGATGCCAAATCATCTTGGATCTGC-TTCA-G
*
6372628 TGA-AAACATCTGAAAGTCAGATCTTCTATG
58 T-ATAAACATCTGAAAGTCAGATCTGCTATG
* * * *
6372658 TCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTAAAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* *
6372723 TCTGAAGGTTAGATCTGCTATG
66 TCTGAAAGTCAGATCTGCTATG
* * ** * *
6372745 ---T--ATTTGCTCTCCATT-TGAATA-TGGAGATGCCAGATCTATTATCTTGGATCTGCTTTGA
1 TCTTCGATTTG-T-TCC-TTGTAAACACAAG-GATGCCA-A---ATCATCTTGGATCTGC-TTCA
* * *
6372803 TGTGA-GAACATCCGAAAGTCAGATCTTCTATG
57 -GT-ATAAACATCTGAAAGTCAGATCTGCTATG
* * ** * * * * * *
6372835 TTTTCAATTTACTCCTTGTAGACACAAGAATGCCAAATCATCTTGGATCTACTTTAGCAAAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* *
6372900 TCTGAAGGTTAGATCTGCTATG
66 TCTGAAAGTCAGATCTGCTATG
6372922 T
1 T
6372923 GTCTGCTCTC
Statistics
Matches: 326, Mismatches: 78, Indels: 74
0.68 0.16 0.15
Matches are distributed among these distances:
82 5 0.02
83 1 0.00
84 13 0.04
85 10 0.03
86 6 0.02
87 139 0.43
88 30 0.09
89 62 0.19
90 31 0.10
91 8 0.02
92 3 0.01
93 13 0.04
94 1 0.00
95 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (87 bp):
TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
TCTGAAAGTCAGATCTGCTATG
Found at i:6372852 original size:177 final size:176
Alignment explanation
Indices: 6372462--6373020 Score: 839
Period size: 176 Copynumber: 3.2 Consensus size: 176
6372452 CGTAAACACG
* * * ** *
6372462 TGAAAGCCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * * * *
6372527 GATCTGCTTCAGTATAAACAGCTGAAGGTTAGATCTACTATGTGTCTGCTTTCCGTCGAGTATGG
66 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
*
6372592 AGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
131 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* *
6372638 TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * * *
6372703 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTATTTGCTCTCCATTTGAATATG
66 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-GTCGAATATG
* * *
6372768 GAGATGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAGAACATC
130 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * * *
6372815 CGAAAGTCAGATCTTCTATGTTTTCAATTTACTCCTTGTAGACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
6372880 GATCTACTTTAGCAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
66 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
*
6372945 AGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
131 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
*
6372991 TGAAAGTCAGATCTGCTATGTCTTCGATTT
1 TGAAAGTCAGATCTTCTATGTCTTCGATTT
6373021 GCTCTCCGTC
Statistics
Matches: 342, Mismatches: 40, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
176 184 0.54
177 158 0.46
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (176 bp):
TGAAAGTCAGATCTTCTATGTCTTCGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:6373049 original size:177 final size:175
Alignment explanation
Indices: 6372462--6373103 Score: 781
Period size: 176 Copynumber: 3.6 Consensus size: 175
6372452 CGTAAACACG
* * * * * *
6372462 TGAAAGCCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACA-AGGATGCCAAATCATCTT
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCTTGTGAACA-AGA-GAAGCCAAATCATCTT
* * * * *
6372526 GGATCTGCTTCAGTATAAACAGCTGAAGGTTAGATCTACTATGTGTCTGCTTTCCGTCGAGTATG
64 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
6372591 GAGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
129 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
*
6372638 TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCTTGTAAACACA-AGAACGCCAAATCATCTT
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCTTGTGAACA-AGAGAA-GCCAAATCATCTT
* * * *
6372702 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTATTTGCTCTCCATTTGAATAT
64 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-GTCGAATAT
* * *
6372767 GGAGATGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAGAACATC
128 GGAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * * * *
6372815 CGAAAGTCAGATCTTCTATGTTTTCAATTTACTCCTTGTAGACACAAGA-ATGCCAAATCATCTT
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCTTGT-GA-ACAAGAGAAGCCAAATCATCTT
* * *
6372879 GGATCTACTTTAGCAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
64 GGATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
6372944 GAGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
129 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * *
6372991 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCT-CTCCGTCGAAGATAGAGAAGCCAAATCTTGT
1 TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCT-TGT-GAACA-AGAGAAGCCAAATC----
** **
6373055 TATCTTGGATCTGCTTCAGTGTAAACA-CATGAAGGCCAGATCTGCTATG
59 -ATCTTGGATCTGCTTCAGTAAAAACATC-TGAAGGTTAGATCTGCTATG
6373104 CTTTGGTCTG
Statistics
Matches: 401, Mismatches: 51, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
175 6 0.01
176 191 0.48
177 157 0.39
178 3 0.01
179 4 0.01
181 1 0.00
182 39 0.10
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
TGAAAGTCAGATCTTCTATGTCTTCGATTTGCTCCTTGTGAACAAGAGAAGCCAAATCATCTTGG
ATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGA
GACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:6373100 original size:93 final size:94
Alignment explanation
Indices: 6372573--6373103 Score: 307
Period size: 87 Copynumber: 5.9 Consensus size: 94
6372563 ACTATGTGTC
* * * * * *
6372573 TGCTTTCCGTCG-AGTATGGAGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACAT
1 TGCTCTCCGTCGAAG-ATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACAT
* *
6372637 CTGAAAGTCAGATCTTCTATGTCTTCGATT
65 CTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * *
6372667 TGCTC-CTTGT-AAACACA-AGAACGCCAAATC----ATCTTGGATCTGC-TTCA-GTAAAAACA
1 TGCTCTC-CGTCGAAGATAGAGAA-GCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACA
* **
6372723 TCTGAAGGTTAGATCTGCTATG---T--ATT
64 TCTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * * * * *
6372749 TGCTCTCCATTTGAATATGGAGATGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAGAACAT
1 TGCTCTCC-GTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACAT
* * * * *
6372814 CCGAAAGTCAGATCTTCTATGTTTTCAATT
65 CTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * * **
6372844 TACTC-CTTGTAGACACA-AGA-ATGCCAAATC----ATCTTGGATCTACTTT-A-GCAAAAACA
1 TGCTCTC-CGTCGA-AGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACA
* ** *
6372900 TCTGAAGGTTAGATCTGCTATG---T-G-TC
64 TCTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * *
6372926 TGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
*
6372991 TGAAAGTCAGATCTGCTATGTCTTCGATT
66 TGAAAGCCAGATCTGCTATGTCTTCGATT
*
6373020 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTTGTTATCTTGGATCTGC-TTCA-GTGTAAACA-
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATC-TGTTATCTTGGATCTGCTTTCATGTGAAAACAT
*
6373082 CATGAAGGCCAGATCTGCTATG
65 C-TGAAAGCCAGATCTGCTATG
6373104 CTTTGGTCTG
Statistics
Matches: 333, Mismatches: 68, Indels: 73
0.70 0.14 0.15
Matches are distributed among these distances:
81 2 0.01
82 19 0.06
83 11 0.03
84 12 0.04
85 3 0.01
87 66 0.20
88 18 0.05
89 58 0.17
90 25 0.08
92 5 0.02
93 45 0.14
94 44 0.13
95 25 0.08
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (94 bp):
TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
TGAAAGCCAGATCTGCTATGTCTTCGATT
Found at i:6384673 original size:17 final size:17
Alignment explanation
Indices: 6384614--6384673 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
6384604 TAATAAATTT
6384614 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
6384633 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
6384647 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
6384665 AAAATATAA
1 AAAATATAA
6384674 AATATAATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:6385158 original size:22 final size:21
Alignment explanation
Indices: 6385123--6385241 Score: 68
Period size: 19 Copynumber: 5.7 Consensus size: 21
6385113 AAAAGGTATC
* *
6385123 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
6385144 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
6385167 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
6385186 TGCAAATTGTATCATATCTAAGAT
1 TACAAA-T-CAT-ATCTCTAAGAT
* *
6385210 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
6385229 TGC-AATCATATCT
1 TACAAATCATATCT
6385242 AAGATTGTAT
Statistics
Matches: 80, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
18 6 0.08
19 24 0.30
20 2 0.03
21 6 0.08
22 18 0.22
23 11 0.14
24 13 0.16
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:6385166 original size:23 final size:22
Alignment explanation
Indices: 6385123--6385223 Score: 66
Period size: 24 Copynumber: 4.6 Consensus size: 22
6385113 AAAAGGTATC
* *
6385123 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
6385144 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
6385167 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* **
6385186 TGCAAATTGTATCATATCTAAGAT
1 TACAAATCATATC-T-TCTAAGAT
* *
6385210 TGCATATCATATCT
1 TACAAATCATATCT
6385224 AAGATTGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
19 16 0.25
21 3 0.05
22 15 0.24
23 11 0.17
24 18 0.29
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:6385202 original size:24 final size:21
Alignment explanation
Indices: 6385136--6385267 Score: 117
Period size: 19 Copynumber: 6.6 Consensus size: 21
6385126 AAATTAAATC
*
6385136 TCTAAGATTACAAA-ATCATA
1 TCTAAGATTGCAAATATCATA
6385156 TCTTCTAAGATTGC--ATATCATA
1 ---TCTAAGATTGCAAATATCATA
6385178 TCTAAGATTGCAAATTGTATCATA
1 TCTAAGATTGCAAA---TATCATA
6385202 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCAAATATCATA
6385221 TCTAAGATTGC--A-ATCATA
1 TCTAAGATTGCAAATATCATA
6385239 TCTAAGATTG----TATCATA
1 TCTAAGATTGCAAATATCATA
6385256 TCTAAGATTGCA
1 TCTAAGATTGCA
6385268 TATCATTGAA
Statistics
Matches: 99, Mismatches: 1, Indels: 22
0.81 0.01 0.18
Matches are distributed among these distances:
17 16 0.16
18 16 0.16
19 30 0.30
21 2 0.02
22 7 0.07
23 10 0.10
24 18 0.18
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (21 bp):
TCTAAGATTGCAAATATCATA
Found at i:6385210 original size:43 final size:38
Alignment explanation
Indices: 6385136--6385273 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 38
6385126 AAATTAAATC
*
6385136 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTGC-AAATCATA---TCTAAGATTGCATATCATA
6385178 TCTAAGATTGCAAATTGTATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGC-AA----ATCATATCTAAGATTGCATATCATA
6385221 TCTAAGATTGC-AATCATATCTAAGATTG--TATCATA
1 TCTAAGATTGCAAATCATATCTAAGATTGCATATCATA
*
6385256 TCTAAGATTGCATATCAT
1 TCTAAGATTGCAAATCAT
6385274 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
35 18 0.20
36 5 0.06
37 16 0.18
41 1 0.01
42 13 0.15
43 30 0.34
46 6 0.07
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (38 bp):
TCTAAGATTGCAAATCATATCTAAGATTGCATATCATA
Found at i:6385281 original size:17 final size:19
Alignment explanation
Indices: 6385159--6385273 Score: 164
Period size: 19 Copynumber: 5.9 Consensus size: 19
6385149 AATCATATCT
6385159 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6385178 TCTAAGATTGCAAATTGTATCATA
1 TCTAAGATTGC--A---TATCATA
6385202 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6385221 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
6385239 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
6385256 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
6385274 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 0, Indels: 16
0.85 0.00 0.15
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 36 0.41
21 1 0.01
22 1 0.01
24 18 0.20
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6385829 original size:87 final size:87
Alignment explanation
Indices: 6385665--6385829 Score: 190
Period size: 87 Copynumber: 1.9 Consensus size: 87
6385655 ACAATAAAGA
* * * *
6385665 GATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAATCTGCTGTGCCTTCG
1 GATGCCAAATCATCTTAGATCTGCTTCAATGAAAACACGTGAAAGCCAAATCTGCTATGCCTTCA
*
6385730 ATTTGCTCCTTGTGTACACAAG
66 ATCTGCTCCTTGTGTACACAAG
* * * * *
6385752 GATGCCAAATCATCTTGGATCTGCTTCAAT-AAAATCATC-TGAAGGTCAGATCTGCTATGTCTT
1 GATGCCAAATCATCTTAGATCTGCTTCAATGAAAA-CA-CGTGAAAGCCAAATCTGCTATGCCTT
* *
6385815 TAATCTGCTTCTTGT
64 CAATCTGCTCCTTGT
6385830 AAACTTATGA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
86 3 0.05
87 60 0.94
88 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTGCTTCAATGAAAACACGTGAAAGCCAAATCTGCTATGCCTTCA
ATCTGCTCCTTGTGTACACAAG
Found at i:6386019 original size:261 final size:256
Alignment explanation
Indices: 6385585--6386067 Score: 671
Period size: 261 Copynumber: 1.9 Consensus size: 256
6385575 AAGACTATCA
* *
6385585 TGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATCTGCTTCTTCAATTTGTT
1 TGTTGATATCTTCGATCTACTCTCCGCCGAACACAGAGACGCCAAATCTGCTTCTTCAATTTGTT
* * * ** *
6385650 TTCTGACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAAAAACCAAA
* * * *
6385715 TCTGCTGTGCCTTCGATTTGCTCCTTGTGTACACAAGGATGCCAAATCATCTTGGATCTGCTTCA
131 TCAGCTATGCCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGATCTGCTTC-
6385780 ATAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
195 ----AATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
6385845 C
256 C
* * * * * *
6385846 TGTTGATATCTTTGATCTACTCTCCGCCGAATATAGAGACGCCAAATTTGTTTCTTCGATTTGTT
1 TGTTGATATCTTCGATCTACTCTCCGCCGAACACAGAGACGCCAAATCTGCTTCTTCAATTTGTT
* * *
6385911 CTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCAAAAACCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAAAAACCAAA
* * *
6385976 TCAGCTATGTCTTCGATTTGTTCCTTGT-AAGCACAAGGATGCCAAGCCATCTTGGATCTGCTTC
131 TCAGCTATGCCTTCGATTTGCTCCTTGTGAA-CACAAGGATGCCAAACCATCTTGGATCTGCTTC
* *
6386040 AGTCATCTGAAGGTTAGATCTGCTATGT
195 AATCATCTGAAGGTCAGATCTGCTATGT
6386068 ATCTACTCTC
Statistics
Matches: 195, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
256 26 0.13
260 1 0.01
261 168 0.86
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (256 bp):
TGTTGATATCTTCGATCTACTCTCCGCCGAACACAGAGACGCCAAATCTGCTTCTTCAATTTGTT
CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAAAAACCAAA
TCAGCTATGCCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
ATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTCC
Found at i:6386353 original size:205 final size:205
Alignment explanation
Indices: 6385899--6386652 Score: 1214
Period size: 205 Copynumber: 3.7 Consensus size: 205
6385889 AAATTTGTTT
*
6385899 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
6385964 GCAAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAGCCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
6386029 GGATCTGCTTCA--GT---CATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCATCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
6386089 AGATG-TCAGA
196 AGATGCT-AGA
*
6386099 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
6386164 GTGAAAGCCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGACGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
6386229 GGATCTGCTTCAGTGTAAACATCTGAAGTTTAGATCTGCTATGTATCTGCTCTCCATCAAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
6386294 AGATGCTAGA
196 AGATGCTAGA
*
6386304 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
6386369 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGGACAATGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
6386434 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATTTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
* *
6386499 AGATGCCAAA
196 AGATGCTAGA
* *
6386509 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAATTTGCTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
6386574 GCGAAAACCAAATTAGCTATGTCTTCGATTTGCTCCTTGTAAGCACATGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
6386639 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
6386653 CCAGATCTAC
Statistics
Matches: 513, Mismatches: 34, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
200 134 0.26
202 2 0.00
205 368 0.72
206 9 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
AGATGCTAGA
Found at i:6390202 original size:6 final size:6
Alignment explanation
Indices: 6390176--6390263 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
6390166 AAGAAACATT
* * **
6390176 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAAA ATCAGGA GGCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA ATCAGA
* *
6390225 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
6390264 GTAAATGCAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 4 0.06
6 53 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:6390219 original size:25 final size:24
Alignment explanation
Indices: 6390191--6390260 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
6390181 AACTAGAATT
6390191 AGAATCAGAATCAAAATCAGGAGGC
1 AGAATCAGAATCAAAATCAGGA-GC
* * *
6390216 AGAATCAGAATCAGAATCAGTATC
1 AGAATCAGAATCAAAATCAGGAGC
6390240 AGGTAAT-AGAATCAAAATCAG
1 A-G-AATCAGAATCAAAATCAG
6390261 AATGTAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 34 0.87
26 3 0.08
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (24 bp):
AGAATCAGAATCAAAATCAGGAGC
Found at i:6390251 original size:31 final size:31
Alignment explanation
Indices: 6390184--6390263 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
6390174 TTATCAGAAC
* *
6390184 TAGAATTAGAATCAGAATCAAAATCAGGAGG
1 TAGAATCAGAATCAGAATCAAAATCAGGAGA
* **
6390215 CAGAATCAGAATCAGAATCAGTATCAGGTA-A
1 TAGAATCAGAATCAGAATCAAAATCAGG-AGA
*
6390246 TAGAATCAAAATCAGAAT
1 TAGAATCAGAATCAGAAT
6390264 GTAAATGCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 40 0.98
32 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (31 bp):
TAGAATCAGAATCAGAATCAAAATCAGGAGA
Found at i:6390488 original size:71 final size:67
Alignment explanation
Indices: 6390409--6390550 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
6390399 TCACCGGATA
* * * *
6390409 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGTGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
6390474 GGCTGC
62 GGCTGC
* * *
6390480 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGTAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
6390545 GC
66 GC
6390547 CAGA
1 CAGA
6390551 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:6390528 original size:27 final size:26
Alignment explanation
Indices: 6390480--6390531 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
6390470 GTGAGGCTGC
*
6390480 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
6390506 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
6390532 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:6390805 original size:27 final size:27
Alignment explanation
Indices: 6390775--6391025 Score: 323
Period size: 27 Copynumber: 9.3 Consensus size: 27
6390765 AGGGTAAAAT
* *
6390775 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
6390802 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
6390829 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
6390856 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
6390883 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
6390910 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
6390937 GGT-ATTTCTACCCTACAAGGGTATTT-
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
6390963 TGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
6390990 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
6391017 GGTAATTTT
1 GGTAATTTT
6391026 GTAAATTGAG
Statistics
Matches: 201, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
26 32 0.16
27 162 0.81
28 7 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:6390848 original size:54 final size:54
Alignment explanation
Indices: 6390775--6391023 Score: 356
Period size: 54 Copynumber: 4.6 Consensus size: 54
6390765 AGGGTAAAAT
* * * *
6390775 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* *
6390829 AGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* ** * *
6390883 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * *
6390937 GGTATTTCTACCCTACAAGGGTATTT-TGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
*
6390990 GGTATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
6391024 TTGTAAATTG
Statistics
Matches: 173, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 49 0.28
54 124 0.72
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
Found at i:6390900 original size:81 final size:81
Alignment explanation
Indices: 6390779--6391020 Score: 380
Period size: 81 Copynumber: 3.0 Consensus size: 81
6390769 TAAAATGGTA
* *
6390779 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
6390843 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* *
6390859 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
*
6390924 ACAGGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * *
6390940 ATTTCTACCCTACAAGGGTATTT-TGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
6391004 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
6391020 A
1 A
6391021 ATTTTGTAAA
Statistics
Matches: 148, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 54 0.36
81 94 0.64
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:6391103 original size:27 final size:28
Alignment explanation
Indices: 6391073--6391258 Score: 125
Period size: 27 Copynumber: 6.9 Consensus size: 28
6391063 GGTACTTTGG
6391073 TAATTTTACAAGTCGA-GGGTATTTCAA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * *
6391100 TAATTTTACAGGTCGA-GAGTATTTCAG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * ***
6391127 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * **
6391154 TAATTTTACAA-ACTAGGGGTATTTTGA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * ***
6391181 TAATTTTACAA-ACCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* ***
6391208 TAATTTTACAAG-CCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
*
6391235 TAATTTTACAAG-CCAGGGGTATTT
1 TAATTTTACAAGTCGAGGGGTATTT
6391259 TTGTAATTTT
Statistics
Matches: 142, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 140 0.99
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.38
Consensus pattern (28 bp):
TAATTTTACAAGTCGAGGGGTATTTCAA
Found at i:6391203 original size:81 final size:81
Alignment explanation
Indices: 6391059--6391429 Score: 390
Period size: 81 Copynumber: 4.6 Consensus size: 81
6391049 TTTTGTAAAT
* * * ** *** *
6391059 CAGGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGAGTAT
1 CAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAAACCAG-GGGTAT
* * *
6391122 TTCAGTAATTTCACAAAT
64 TTTAGTAATTTTACAAAC
6391140 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
* *
6391205 TGGTAATTTTACAAGC
66 TAGTAATTTTACAAAC
* * * * *
6391221 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTTG-TAATTTTATAAACAAAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTA-TTTTGATAATTTTACAAACCAGGGGTATT
6391285 TTAGTAATTTTACAAAC
65 TTAGTAATTTTACAAAC
** * * * * *
6391302 CAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
* * *
6391367 TGGTGATTTTATAAAC
66 TAGTAATTTTACAAAC
** *
6391383 CAAAGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT-AGTAATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA-TAATTT
6391430 GGTAAACTAA
Statistics
Matches: 244, Mismatches: 41, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
80 5 0.02
81 229 0.94
82 10 0.04
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
TAGTAATTTTACAAAC
Found at i:6391259 original size:27 final size:27
Alignment explanation
Indices: 6391126--6391429 Score: 401
Period size: 27 Copynumber: 11.3 Consensus size: 27
6391116 GAGTATTTCA
* *
6391126 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
6391153 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
6391180 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
6391207 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* *
6391234 GTAATTTTACAAGCCAGGGGTATTTTT
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * *
6391261 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
6391288 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
** * *
6391315 GTAATTTTGTAAACCAAGAGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
6391342 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * ** *
6391369 GTGATTTTATAAACCAAAGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
* *
6391396 GTAATTTTACAAACTAGGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
6391423 GTAATTT
1 GTAATTT
6391430 GGTAAACTAA
Statistics
Matches: 240, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 240 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:6396884 original size:64 final size:64
Alignment explanation
Indices: 6396800--6396986 Score: 189
Period size: 67 Copynumber: 2.9 Consensus size: 64
6396790 TACAAGACAT
* *
6396800 TATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGA
1 TATAAGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGA
* * * * * * *
6396864 TATAAGTAGTTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGA
1 TATAAGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGA
6396929 GA
63 GA
* * * * * *
6396931 TA-AACTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TATAAGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
6396987 CGAACTATAT
Statistics
Matches: 98, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 22 0.22
65 8 0.08
66 18 0.18
67 30 0.31
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATAAGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGA
Found at i:6400224 original size:17 final size:16
Alignment explanation
Indices: 6400170--6400241 Score: 62
Period size: 16 Copynumber: 4.6 Consensus size: 16
6400160 TGTGATATTT
*
6400170 AATAATAAATTTA-AA
1 AATAATATATTTATAA
*
6400185 ATATAATATA-TAATAA
1 A-ATAATATATTTATAA
*
6400201 AAAAATATATTTATAA
1 AATAATATATTTATAA
6400217 AGATAATA-ATTATATAA
1 A-ATAATATATT-TATAA
6400234 AA-AATATA
1 AATAATATA
6400242 AAATATAATG
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
15 14 0.30
16 21 0.46
17 11 0.24
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (16 bp):
AATAATATATTTATAA
Found at i:6400224 original size:32 final size:31
Alignment explanation
Indices: 6400173--6400241 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
6400163 GATATTTAAT
* *
6400173 AATAAATTTAAAATATAATATATAATA-AAAA
1 AATATATTTAAAAGATAATA-ATAATATAAAA
*
6400204 AATATATTTATAAAGATAATAATTATATAAAA
1 AATATATTTA-AAAGATAATAATAATATAAAA
6400236 AATATA
1 AATATA
6400242 AAATATAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 14 0.42
32 19 0.58
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (31 bp):
AATATATTTAAAAGATAATAATAATATAAAA
Found at i:6400242 original size:17 final size:17
Alignment explanation
Indices: 6400182--6400242 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
6400172 TAATAAATTT
6400182 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
6400201 AAAA-ATATATT-TAT-A
1 AAAATATA-ATTATATAA
*
6400216 AAGATAATAATTATATAA
1 AAAAT-ATAATTATATAA
6400234 AAAATATAA
1 AAAATATAA
6400243 AATATAATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 11 0.31
18 9 0.26
19 6 0.17
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:6400725 original size:22 final size:21
Alignment explanation
Indices: 6400690--6400814 Score: 66
Period size: 19 Copynumber: 6.0 Consensus size: 21
6400680 AAAAGGTATC
* *
6400690 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
6400711 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
6400734 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
6400753 TGCAAATTGTATCATATCTAAGAT
1 TACAAA-T-CAT-ATCTCTAAGAT
* *
6400777 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
6400796 TGC-AATCATAT-T-TAAGAT
1 TACAAATCATATCTCTAAGAT
6400814 T
1 T
6400815 GTATCATATC
Statistics
Matches: 87, Mismatches: 9, Indels: 19
0.76 0.08 0.17
Matches are distributed among these distances:
18 13 0.15
19 25 0.29
20 1 0.01
21 6 0.07
22 18 0.21
23 11 0.13
24 13 0.15
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:6400733 original size:23 final size:22
Alignment explanation
Indices: 6400690--6400790 Score: 66
Period size: 24 Copynumber: 4.6 Consensus size: 22
6400680 AAAAGGTATC
* *
6400690 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
6400711 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
6400734 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* **
6400753 TGCAAATTGTATCATATCTAAGAT
1 TACAAATCATATC-T-TCTAAGAT
* *
6400777 TGCATATCATATCT
1 TACAAATCATATCT
6400791 AAGATTGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
19 16 0.25
21 3 0.05
22 15 0.24
23 11 0.17
24 18 0.29
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:6400750 original size:19 final size:19
Alignment explanation
Indices: 6400726--6400837 Score: 149
Period size: 19 Copynumber: 5.8 Consensus size: 19
6400716 AATCATATCT
6400726 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6400745 TCTAAGATTGCAAATTGTATCATA
1 TCTAAGATTGC--A---TATCATA
6400769 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6400788 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
6400806 TTTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
6400823 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
6400838 AATTGAAGAT
Statistics
Matches: 83, Mismatches: 2, Indels: 16
0.82 0.02 0.16
Matches are distributed among these distances:
17 15 0.18
18 15 0.18
19 33 0.40
21 1 0.01
22 1 0.01
24 18 0.22
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6400769 original size:24 final size:21
Alignment explanation
Indices: 6400703--6400834 Score: 108
Period size: 19 Copynumber: 6.6 Consensus size: 21
6400693 AAATTAAATC
*
6400703 TCTAAGATTACAAA-ATCATA
1 TCTAAGATTGCAAATATCATA
6400723 TCTTCTAAGATTGC--ATATCATA
1 ---TCTAAGATTGCAAATATCATA
6400745 TCTAAGATTGCAAATTGTATCATA
1 TCTAAGATTGCAAA---TATCATA
6400769 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCAAATATCATA
6400788 TCTAAGATTGC--A-ATCATA
1 TCTAAGATTGCAAATATCATA
*
6400806 TTTAAGATTG----TATCATA
1 TCTAAGATTGCAAATATCATA
6400823 TCTAAGATTGCA
1 TCTAAGATTGCA
6400835 TATAATTGAA
Statistics
Matches: 97, Mismatches: 3, Indels: 22
0.80 0.02 0.18
Matches are distributed among these distances:
17 15 0.15
18 15 0.15
19 30 0.31
21 2 0.02
22 7 0.07
23 10 0.10
24 18 0.19
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (21 bp):
TCTAAGATTGCAAATATCATA
Found at i:6400777 original size:43 final size:38
Alignment explanation
Indices: 6400703--6400834 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 38
6400693 AAATTAAATC
*
6400703 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTGC-AAATCATA---TCTAAGATTGCATATCATA
6400745 TCTAAGATTGCAAATTGTATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGC-AA----ATCATATCTAAGATTGCATATCATA
*
6400788 TCTAAGATTGC-AATCATATTTAAGATTG--TATCATA
1 TCTAAGATTGCAAATCATATCTAAGATTGCATATCATA
6400823 TCTAAGATTGCA
1 TCTAAGATTGCA
6400835 TATAATTGAA
Statistics
Matches: 83, Mismatches: 2, Indels: 16
0.82 0.02 0.16
Matches are distributed among these distances:
35 18 0.22
37 15 0.18
41 1 0.01
42 13 0.16
43 30 0.36
46 6 0.07
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (38 bp):
TCTAAGATTGCAAATCATATCTAAGATTGCATATCATA
Found at i:6400827 original size:35 final size:36
Alignment explanation
Indices: 6400763--6400834 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
6400753 TGCAAATTGT
6400763 ATCATATCTAAGATTGCATATCATATCTAAGATTGCA
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCA
*
6400800 ATCATATTTAAGATTG-TATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCA
6400835 TATAATTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 19 0.56
37 15 0.44
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (36 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCA
Found at i:6401333 original size:87 final size:87
Alignment explanation
Indices: 6401233--6401609 Score: 235
Period size: 87 Copynumber: 4.3 Consensus size: 87
6401223 ACAATAAAGA
*
6401233 GATGCCAAATCATCTTAGATCTGCTTCAGCGT-AAACACGTGAAAGCCAAATCTGCTGTGTCTTC
1 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAAACACGTGAAAGCCAAATCTGCTATGTCTTC
6401297 GATTTGCTCCTTGTGAACACAAG
66 GATTTGCTCCTTGT-AACACAAG
* * * * *
6401320 GATGCCAAATCATCTTGGATCTGTTTCA--GTAAAATCATC-TGAAGGTCAGATCTGCTATGTCT
1 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAAA-CA-CGTGAAAGCCAAATCTGCTATGTCT
** * * * *
6401382 TTAATCTGCTTCTTGTAA-ACTTAT
64 TCGATTTGCTCCTTGTAACAC-AAG
** * * * * * *
6401406 GACTGTCCTGTTGAT-ATCTTTGATCTGCTCTCCGC-TGAATACA-GAG-ACGCCAAATTTG-T-
1 GA-TG-CC---AAATCATCTTAGATCTGCT-TCAGCGT-AAAACACGTGAAAGCCAAATCTGCTA
* * *
6401465 T-TCTTCGATTTG-TTC-TCTAACAATACAG
59 TGTCTTCGATTTGCTCCTTGTAAC-ACA-AG
* * * * *
6401493 AGATGCCAAATCATCTTAGATTTGCTTCAGCGT-AAGCACGCGAAAACCAAATCAGCTATGTCTT
1 -GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAAACACGTGAAAGCCAAATCTGCTATGTCTT
*
6401557 CGATTTGTTCCTTGTAAGCACAAG
65 CGATTTGCTCCTTGTAA-CACAAG
* *
6401581 GATGCCAAACCATCTTGGATCTGCTTCAG
1 GATGCCAAATCATCTTAGATCTGCTTCAG
6401610 TCATCTGAAG
Statistics
Matches: 214, Mismatches: 48, Indels: 56
0.67 0.15 0.18
Matches are distributed among these distances:
82 3 0.01
83 8 0.04
84 21 0.10
85 9 0.04
86 14 0.07
87 110 0.51
88 10 0.05
89 7 0.03
90 21 0.10
91 5 0.02
92 3 0.01
93 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAAACACGTGAAAGCCAAATCTGCTATGTCTTC
GATTTGCTCCTTGTAACACAAG
Found at i:6401587 original size:261 final size:256
Alignment explanation
Indices: 6401153--6401635 Score: 716
Period size: 261 Copynumber: 1.9 Consensus size: 256
6401143 AAGACTATCA
* *
6401153 TGTTGATATCTTCGATCTACTCTCTGTTGAACACAGAGACGCCAAATCTGCTTCTTCGATCTGTT
1 TGTTGATATCTTCGATCTACTCTCCGCTGAACACAGAGACGCCAAATCTGCTTCTTCGATCTGTT
* * * *
6401218 TTCTGACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGAAAACCAAA
* * * *
6401283 TCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGATCTGTTTCA
131 TCAGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
6401348 GTAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
196 G-----TCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
6401413 C
256 C
* * * * * *
6401414 TGTTGATATCTTTGATCTGCTCTCCGCTGAATACAGAGACGCCAAATTTGTTTCTTCGATTTGTT
1 TGTTGATATCTTCGATCTACTCTCCGCTGAACACAGAGACGCCAAATCTGCTTCTTCGATCTGTT
* * *
6401479 CTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAAAACCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGAAAACCAAA
*
6401544 TCAGCTATGTCTTCGATTTGTTCCTTGT-AAGCACAAGGATGCCAAACCATCTTGGATCTGCTTC
131 TCAGCTATGTCTTCGATTTGCTCCTTGTGAA-CACAAGGATGCCAAACCATCTTGGATCTGCTTC
*
6401608 AGTCATCTGAAGGTTAGATCTGCTATGT
195 AGTCATCTGAAGGTCAGATCTGCTATGT
6401636 ATCTGCTCTC
Statistics
Matches: 200, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
256 25 0.12
260 2 0.01
261 173 0.87
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (256 bp):
TGTTGATATCTTCGATCTACTCTCCGCTGAACACAGAGACGCCAAATCTGCTTCTTCGATCTGTT
CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGAAAACCAAA
TCAGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
GTCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTCC
Found at i:6401921 original size:205 final size:205
Alignment explanation
Indices: 6401467--6402220 Score: 1311
Period size: 205 Copynumber: 3.7 Consensus size: 205
6401457 AAATTTGTTT
6401467 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
6401532 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
6401597 GGATCTGCTTCA--GT---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
6401657 AGATGTCAGA
196 AGATGCCAGA
* *
6401667 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
6401732 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
6401797 GGATCTGCTTCAGTGTAAACATCTGAAGTTTAGATCTACTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
6401862 AGATGCCAGA
196 AGATGCCAGA
*
6401872 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
6401937 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
6402002 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTTCGTCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
6402067 AGATGCCAAA
196 AGATGCCAGA
*
6402077 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
6402142 GCGAAAACCAAATTAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
6402207 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
6402221 CTAGATCTAC
Statistics
Matches: 526, Mismatches: 22, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
200 138 0.26
202 2 0.00
205 378 0.72
206 8 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:6406030 original size:19 final size:19
Alignment explanation
Indices: 6405978--6406030 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
6405968 GAATTAGAAT
* *
6405978 CAGAATCAAAATCAAGTGA
1 CAGAATCAAAATCAGGTAA
**
6405997 CAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGGTAA
*
6406016 TAGAATCAAAATCAG
1 CAGAATCAAAATCAG
6406031 AATGTGAATG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAAAATCAGGTAA
Found at i:6406207 original size:26 final size:27
Alignment explanation
Indices: 6406152--6406211 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
6406142 GCGAGGCTGC
*
6406152 CAGATATTGTGACGAAGTCACCGGATA
1 CAGATATTGTGACGAAGTCACCAGATA
* *
6406179 CAGATATTGTGGC-TAGTCCACCAGA-A
1 CAGATATTGTGACGAAGT-CACCAGATA
6406205 CAGATAT
1 CAGATAT
6406212 ATATATATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACGAAGTCACCAGATA
Found at i:6406300 original size:27 final size:26
Alignment explanation
Indices: 6406252--6406303 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
6406242 GCGAGGCTGC
*
6406252 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
6406278 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
6406304 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:6406577 original size:27 final size:27
Alignment explanation
Indices: 6406548--6406771 Score: 265
Period size: 27 Copynumber: 8.3 Consensus size: 27
6406538 GGGTAAAATG
* * *
6406548 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
6406575 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
6406602 GTAATTCTACCATACAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
6406629 AT-ATTTCTACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAAGGGTATTTCA
* * *
6406656 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
6406683 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
6406710 GT-ATTTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCA
6406737 GT-ATTTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCA
*
6406764 ATAATTTT
1 GTAATTTT
6406772 GTAAATCGAG
Statistics
Matches: 171, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.04
27 157 0.92
28 7 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:6406770 original size:81 final size:81
Alignment explanation
Indices: 6406551--6406771 Score: 327
Period size: 81 Copynumber: 2.7 Consensus size: 81
6406541 TAAAATGGTA
* * *
6406551 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCAT
6406615 ACAAGGGTATTTCAAT
66 ACAAGGGTATTTCAAT
* *
6406631 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCAT
* **
6406696 ACAGGGGTATTTCGGT
66 ACAAGGGTATTTCAAT
* * * *
6406712 ATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAATAATTTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTT
6406772 GTAAATCGAG
Statistics
Matches: 127, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 4 0.03
81 123 0.97
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCAT
ACAAGGGTATTTCAAT
Found at i:6406783 original size:27 final size:27
Alignment explanation
Indices: 6406753--6406896 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 27
6406743 CTACCCTACA
*
6406753 AGGGTATTTCAATAATTTTGTAAATCG
1 AGGGTATTTCAATAATTTTATAAATCG
*** ** * *
6406780 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTATTTCAATAATTTTATAAATCG
** * *
6406807 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAATAATTTTATAAATCG
* **
6406834 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCAATAATTTTATAAATCG
* * * *
6406861 AAGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCAATAATTTTATAAATCG
6406887 AGGGGTATTT
1 A-GGGTATTT
6406897 TGGTAATTTT
Statistics
Matches: 90, Mismatches: 24, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
26 4 0.04
27 86 0.96
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.35
Consensus pattern (27 bp):
AGGGTATTTCAATAATTTTATAAATCG
Found at i:6406799 original size:81 final size:80
Alignment explanation
Indices: 6406537--6406799 Score: 269
Period size: 81 Copynumber: 3.2 Consensus size: 80
6406527 TTAACATCCT
* * * *
6406537 AGGGTAAAATGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 AGGGTAAAACGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
6406602 GTAATTCTACCATAC
66 GTAATTTTACCATAC
*** ** * *
6406617 AAGGGTATTTCAATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTT
1 -AGGGTAAAACGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
6406682 AGTAATTTTACCCTAC
65 AGTAATTTTACCATAC
*** * * * *
6406698 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
1 A-GGGTAAAACGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
6406763 AATAATTTTGTA-AAT-C
65 AGTAA-TTT-TACCATAC
6406779 GAGGGTAAAACGGTAATTCTA
1 -AGGGTAAAACGGTAATTCTA
6406800 TAAATCAAGG
Statistics
Matches: 152, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 144 0.95
82 5 0.03
83 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (80 bp):
AGGGTAAAACGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
GTAATTTTACCATAC
Found at i:6406948 original size:81 final size:81
Alignment explanation
Indices: 6406808--6407149 Score: 384
Period size: 81 Copynumber: 4.2 Consensus size: 81
6406798 TATAAATCAA
* * * ** *** *
6406808 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAAGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAAACCAG-AGGTATTTT
* *
6406871 AGTAATTTCACAAATCAG
64 AGTAATTTTACAAACCAG
* *
6406889 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGAGGTATTTTAG
*
6406954 TAATTTTACAAGCCAG
66 TAATTTTACAAACCAG
* * * *
6406970 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-AGTAATTTTACAAACCAGGGGTATTTTT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA-TAATTTTACAAACCAGAGGTA-TTTT
* ** *
6407034 GGTAATTTTGTAAACCAA
64 AGTAATTTTACAAACCAG
* * * * *
6407052 GAGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAAGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGAGGTATTTTAG
6407117 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
6407133 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
6407150 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.00
81 148 0.67
82 72 0.33
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGAGGTATTTTAG
TAATTTTACAAACCAG
Found at i:6407085 original size:109 final size:109
Alignment explanation
Indices: 6406889--6407165 Score: 416
Period size: 109 Copynumber: 2.6 Consensus size: 109
6406879 CACAAATCAG
* * * ** * *
6406889 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTGG
*
6406954 TAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAAA-CAAA
66 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA
6406997 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGGTAATTTTGTAAACCAAGAGTATTTTG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTA-TTTTGGTAATTTTGTAAACCAAGAGTATTTTG
* *
6407062 GTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAA
65 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA
* *
6407107 -GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAACTAA-AGTATT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATT
6407166 CTAAACAGGA
Statistics
Matches: 155, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
107 6 0.04
108 50 0.32
109 95 0.61
110 4 0.03
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (109 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTGG
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA
Found at i:6407156 original size:27 final size:27
Alignment explanation
Indices: 6406863--6407149 Score: 376
Period size: 27 Copynumber: 10.6 Consensus size: 27
6406853 ACAGGTCGAA
** * *
6406863 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
6406890 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
6406917 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
6406944 GGTATTTTGGTAATTTTACAAGCCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
6406971 GGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
6406998 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
6407025 GGTATTTTTGGTAATTTTGTAAACCAAG
1 GGTA-TTTTGGTAATTTTACAAACCAGG
* *
6407053 AGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * **
6407080 GGTATTTTGGTGATTTTATAAACCAAA
1 GGTATTTTGGTAATTTTACAAACCAGG
*
6407107 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
6407134 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
6407150 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 38, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
27 199 0.90
28 22 0.10
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:6407791 original size:35 final size:36
Alignment explanation
Indices: 6407735--6407860 Score: 193
Period size: 35 Copynumber: 3.5 Consensus size: 36
6407725 AATCATATCT
6407735 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCAATCATA
6407772 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* *
6407808 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
6407843 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
6407861 TGAAGATTAT
Statistics
Matches: 83, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
35 36 0.43
36 21 0.25
37 26 0.31
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:6407799 original size:54 final size:54
Alignment explanation
Indices: 6407735--6407860 Score: 252
Period size: 54 Copynumber: 2.3 Consensus size: 54
6407725 AATCATATCT
6407735 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
6407789 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
6407843 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
6407861 TGAAGATTAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:6407804 original size:14 final size:15
Alignment explanation
Indices: 6407749--6407858 Score: 87
Period size: 17 Copynumber: 6.5 Consensus size: 15
6407739 AGATTGCATA
6407749 TCATATCTAAGATTG
1 TCATATCTAAGATTG
6407764 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
6407782 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
6407799 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
6407818 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
6407836 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
6407853 -CATATC
1 TCATATC
6407859 ATTGAAGATT
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.07
17 32 0.37
18 31 0.36
19 17 0.20
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:6407868 original size:17 final size:19
Alignment explanation
Indices: 6407735--6407860 Score: 210
Period size: 19 Copynumber: 6.9 Consensus size: 19
6407725 AATCATATCT
6407735 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6407754 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
6407772 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
6407789 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6407808 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
6407826 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
6407843 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
6407861 TGAAGATTAT
Statistics
Matches: 101, Mismatches: 0, Indels: 12
0.89 0.00 0.11
Matches are distributed among these distances:
17 32 0.32
18 32 0.32
19 37 0.37
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6409835 original size:30 final size:31
Alignment explanation
Indices: 6409799--6409896 Score: 110
Period size: 30 Copynumber: 3.1 Consensus size: 31
6409789 TAATTTACAA
*
6409799 ATAAAAATAT-ATGATAATGTAAATTATAAT
1 ATAAAAATATAATGATAATGTAAAATATAAT
6409829 ATAAAAATATAAT-ATAATGTATATAATATAAT
1 ATAAAAATATAATGATAATGTA-A-AATATAAT
* *
6409861 ATAAAAAATATCATGATGTATAGTAAAATATAAT
1 AT-AAAAATATAATGAT-AAT-GTAAAATATAAT
6409895 AT
1 AT
6409897 GTAATAAATA
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
30 18 0.31
31 3 0.05
32 9 0.16
33 10 0.17
34 12 0.21
35 3 0.05
36 3 0.05
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (31 bp):
ATAAAAATATAATGATAATGTAAAATATAAT
Found at i:6409842 original size:5 final size:5
Alignment explanation
Indices: 6409823--6409937 Score: 57
Period size: 5 Copynumber: 23.6 Consensus size: 5
6409813 TAATGTAAAT
* *
6409823 TATAA TATAA -A-AA TATAA TATAA TGT-A TATAA TATAA TATAA -AAAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * * *
6409869 TATCA TGAT-G TATAG TAAAA TATAA TATGTAA TA-AA TAT-A TACAAA
1 TATAA T-ATAA TATAA TATAA TATAA TA--TAA TATAA TATAA TA-TAA
*
6409915 TAGAA TATAA TGA-AA TATAA TAT
1 TATAA TATAA T-ATAA TATAA TAT
6409938 GATAAGGGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
3 2 0.02
4 18 0.21
5 54 0.64
6 6 0.07
7 5 0.06
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (5 bp):
TATAA
Found at i:6427782 original size:47 final size:47
Alignment explanation
Indices: 6427612--6428249 Score: 997
Period size: 47 Copynumber: 13.3 Consensus size: 47
6427602 TACATGATAG
* *
6427612 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
6427659 TAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 T--ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
6427710 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
6427757 TATATGTGATAAGGCCTAATAGCCGATGTGTTATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTG--ATGAATGTGAAAGTGTA
* *
6427806 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
6427855 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
6427902 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
6427949 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TA
6428000 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
6428049 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
6428096 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
6428143 TATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
6428190 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
6428237 TAAATGTGATAAG
1 TATATGTGATAAG
6428250 TCCCGAAGGG
Statistics
Matches: 553, Mismatches: 26, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
47 281 0.51
49 224 0.41
51 48 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Done.