Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 223 of 311
Found at i:75908099 original size:27 final size:25
Alignment explanation
Indices: 75908069--75908210 Score: 76
Period size: 27 Copynumber: 5.5 Consensus size: 25
75908059 AAGGAGCTTT
75908069 AAAATAAATAATATATATATAAATTTG
1 AAAATAAATAATATATA-A-AAATTTG
* * *
75908096 AAAATGAATAACATATAAAAA-GTG
1 AAAATAAATAATATATAAAAATTTG
* * *
75908120 TAAATTAAATACTATACATGAAAATTTG
1 -AAAATAAATA--ATATATAAAAATTTG
* * *
75908148 --AATAGATAATATATGGAATAATCT-
1 AAAATAAATAATATAT--AAAAATTTG
* *
75908172 AAAATAAAGAATATATAAAAATATTTT
1 AAAATAAATAATATAT-AAAA-ATTTG
75908199 AAAATAAATAAT
1 AAAATAAATAAT
75908211 TTACGGAAGG
Statistics
Matches: 84, Mismatches: 21, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
23 5 0.06
24 2 0.02
25 25 0.30
26 16 0.19
27 34 0.40
28 2 0.02
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (25 bp):
AAAATAAATAATATATAAAAATTTG
Found at i:75913284 original size:26 final size:28
Alignment explanation
Indices: 75913225--75913279 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
75913215 AATTCAGAAA
75913225 ATCAAATAATAAGATCCATCATAGGTTTC
1 ATCAAATAATAAGATCCATCATAGG-TTC
75913254 ATCAAATAATAAGATCCATCATAGGT
1 ATCAAATAATAAGATCCATCATAGGT
75913280 ATCAAGGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (28 bp):
ATCAAATAATAAGATCCATCATAGGTTC
Found at i:75915288 original size:2 final size:2
Alignment explanation
Indices: 75915283--75915399 Score: 234
Period size: 2 Copynumber: 58.5 Consensus size: 2
75915273 TGTTTATATA
75915283 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
75915325 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
75915367 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
75915400 TTTGGTAATG
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 115 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:75928877 original size:32 final size:32
Alignment explanation
Indices: 75928836--75928919 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
75928826 GGGTTCAATT
*
75928836 AAGTACTTGAACTTGATTTTCTTGGT-CTAATC
1 AAGTACTTGAACTTG-TTTTCTTGGTGCAAATC
*
75928868 AAGTACTTGAACTTGGTTTCTTGGTGCAAATC
1 AAGTACTTGAACTTGTTTTCTTGGTGCAAATC
* *
75928900 TAGTGCTTGAACTTGGTTTT
1 AAGTACTTGAACTT-GTTTT
75928920 TTTTGGTCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
31 9 0.20
32 32 0.71
33 4 0.09
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (32 bp):
AAGTACTTGAACTTGTTTTCTTGGTGCAAATC
Found at i:75930765 original size:20 final size:20
Alignment explanation
Indices: 75930742--75930784 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
75930732 AAATCCAAAT
*
75930742 TAAAATCCTGAAATTCAGGA
1 TAAAATCCTAAAATTCAGGA
*
75930762 TAAAATTCTAAAATTCAGGA
1 TAAAATCCTAAAATTCAGGA
75930782 TAA
1 TAA
75930785 TAATACTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.28
Consensus pattern (20 bp):
TAAAATCCTAAAATTCAGGA
Found at i:75933280 original size:23 final size:22
Alignment explanation
Indices: 75933253--75933309 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
75933243 TAAGTAAAGA
* *
75933253 AAAAGAAAGATAAAAATGAAAC
1 AAAAGAAAGAAAAAAAGGAAAC
*
75933275 ACAAAGAAAAGAAAAAAAGGAAAG
1 A-AAAG-AAAGAAAAAAAGGAAAC
75933299 AAAAG-AAGAAA
1 AAAAGAAAGAAA
75933310 GAAGGAGACG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 6 0.20
22 1 0.03
23 8 0.27
24 15 0.50
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.04
Consensus pattern (22 bp):
AAAAGAAAGAAAAAAAGGAAAC
Found at i:75933300 original size:18 final size:20
Alignment explanation
Indices: 75933277--75933315 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
75933267 AATGAAACAC
75933277 AAAGAAAAGAA-AAA-AAGG
1 AAAGAAAAGAAGAAAGAAGG
75933295 AAAGAAAAGAAGAAAGAAGG
1 AAAGAAAAGAAGAAAGAAGG
75933315 A
1 A
75933316 GACGAACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.58
19 3 0.16
20 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (20 bp):
AAAGAAAAGAAGAAAGAAGG
Found at i:75935476 original size:15 final size:15
Alignment explanation
Indices: 75935453--75935490 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
75935443 AGATTTTTAA
*
75935453 AATATATATTATTTAT
1 AATAAATATTATTT-T
75935469 AA-AAATATTATTTT
1 AATAAATATTATTTT
75935483 AATAAATA
1 AATAAATA
75935491 AATTTCATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 15 0.75
16 2 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAAATATTATTTT
Found at i:75935487 original size:17 final size:19
Alignment explanation
Indices: 75935451--75935488 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
75935441 ATAGATTTTT
*
75935451 AAAATATATATTATTTATA
1 AAAATATATATTATTAATA
75935470 AAAATAT-TATT-TTAATA
1 AAAATATATATTATTAATA
75935487 AA
1 AA
75935489 TAAATTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 4 0.22
19 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AAAATATATATTATTAATA
Found at i:75936805 original size:20 final size:21
Alignment explanation
Indices: 75936768--75936807 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
75936758 TTAAAAAAAT
*
75936768 ATTTTTAATGTAATATTTTAG
1 ATTTTTAATGTAAAATTTTAG
*
75936789 ATTTTTTAT-TAAAATTTTA
1 ATTTTTAATGTAAAATTTTA
75936808 AGGGATGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
ATTTTTAATGTAAAATTTTAG
Found at i:75940066 original size:39 final size:39
Alignment explanation
Indices: 75940012--75940091 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
75940002 AAGAGATTAC
* *
75940012 ATAGTTTTGTTCGTCAAAAACATCAGTTGCATATCAATG
1 ATAGTTTTCTTCGTCAAAAACATCAGTTGCATATAAATG
*
75940051 ATAGTTTTCTTCGTCAAAAACATCTGTTGCATATAAATG
1 ATAGTTTTCTTCGTCAAAAACATCAGTTGCATATAAATG
75940090 AT
1 AT
75940092 TAAAATTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (39 bp):
ATAGTTTTCTTCGTCAAAAACATCAGTTGCATATAAATG
Found at i:75940975 original size:58 final size:59
Alignment explanation
Indices: 75940863--75940976 Score: 133
Period size: 58 Copynumber: 1.9 Consensus size: 59
75940853 TTTGATAGTT
* * * *
75940863 GTCTTCAATTTTAGGATCGTTTTCTGTTAAAACCTTTATAGTGGCAAGTTTCACATCTA
1 GTCTTCAATTTCAGGATCATTTTCTATTAAAACCTTTATAGTGGCAAGTATCACATCTA
* * * *
75940922 GTCTTCAATTTCAGGTTCATTTT-TATTAAAGCTTTTATAAG-GGCATGTATCACAT
1 GTCTTCAATTTCAGGATCATTTTCTATTAAAACCTTTAT-AGTGGCAAGTATCACAT
75940977 TCTTTCAAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
58 24 0.52
59 22 0.48
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (59 bp):
GTCTTCAATTTCAGGATCATTTTCTATTAAAACCTTTATAGTGGCAAGTATCACATCTA
Found at i:75942611 original size:16 final size:17
Alignment explanation
Indices: 75942592--75942625 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75942582 GAGATGAAAG
*
75942592 AAAATG-AAACTTTTGA
1 AAAATGCAAAATTTTGA
75942608 AAAATGCAAAATTTTGA
1 AAAATGCAAAATTTTGA
75942625 A
1 A
75942626 TTTAAATGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (17 bp):
AAAATGCAAAATTTTGA
Found at i:75942636 original size:51 final size:51
Alignment explanation
Indices: 75942578--75942680 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
75942568 TTGAGTTGAA
75942578 AAATGAGATGAAAGAAAATGAAACTTTTGAAAAATGCAAAATTTTGAATTT
1 AAATGAGATGAAAGAAAATGAAACTTTTGAAAAATGCAAAATTTTGAATTT
* * * **
75942629 AAATGAGATGAAAGAAATTGGAACTTTTGAAAATTGCGTAATTTTGAATTT
1 AAATGAGATGAAAGAAAATGAAACTTTTGAAAAATGCAAAATTTTGAATTT
75942680 A
1 A
75942681 CTTTTGTCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.47, C:0.04, G:0.17, T:0.32
Consensus pattern (51 bp):
AAATGAGATGAAAGAAAATGAAACTTTTGAAAAATGCAAAATTTTGAATTT
Found at i:75949735 original size:21 final size:20
Alignment explanation
Indices: 75949711--75949750 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
75949701 ATTTTTAAGT
*
75949711 AATTTTTAAAATAATTAAAAA
1 AATTTTAAAAAT-ATTAAAAA
75949732 AATTTTAAAAATATTAAAA
1 AATTTTAAAAATATTAAAA
75949751 TGATAGTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTTTAAAAATATTAAAAA
Found at i:75950786 original size:20 final size:20
Alignment explanation
Indices: 75950749--75950786 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75950739 TGATGGGGAG
*
75950749 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
75950769 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
75950787 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:75952735 original size:46 final size:46
Alignment explanation
Indices: 75952682--75953001 Score: 471
Period size: 46 Copynumber: 7.0 Consensus size: 46
75952672 AGTGTGCTCT
* *
75952682 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
75952728 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
75952774 CTGATATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
75952820 CTGATATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
75952866 CAGATATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
75952912 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
75952958 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
75953002 TCATGTCAAA
Statistics
Matches: 254, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 253 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:75964974 original size:29 final size:30
Alignment explanation
Indices: 75964931--75964994 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 30
75964921 AGTGAAGAGT
75964931 TCGCAGGTAAGCTCTCATGC-TTGGTGAGC
1 TCGCAGGTAAGCTCTCATGCTTTGGTGAGC
75964960 TCGCAGGTGAA-CTCTCATGCTTTGGTGAGC
1 TCGCAGGT-AAGCTCTCATGCTTTGGTGAGC
75964990 TCGCA
1 TCGCA
75964995 ATGTTGGTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 17 0.52
30 16 0.48
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (30 bp):
TCGCAGGTAAGCTCTCATGCTTTGGTGAGC
Found at i:75965021 original size:18 final size:17
Alignment explanation
Indices: 75964980--75965022 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
75964970 ACTCTCATGC
75964980 TTTGGTGAGCTCGCAAT
1 TTTGGTGAGCTCGCAAT
* *
75964997 GTTGGTGAGCTCGTATAT
1 TTTGGTGAGCTCGCA-AT
75965015 TTTGGTGA
1 TTTGGTGA
75965023 ACTGGTAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.16, C:0.12, G:0.33, T:0.40
Consensus pattern (17 bp):
TTTGGTGAGCTCGCAAT
Found at i:75967608 original size:19 final size:19
Alignment explanation
Indices: 75967566--75967622 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
75967556 AAATTACAAA
*
75967566 AAAATAATTTTCAGAAATTC
1 AAAATAATTTTTA-AAATTC
*
75967586 AAAATAATTTTTAAAATTT
1 AAAATAATTTTTAAAATTC
*
75967605 AAAAT-ATTTATAAAATTC
1 AAAATAATTTTTAAAATTC
75967623 CAATATTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.33
19 10 0.30
20 12 0.36
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTC
Found at i:75967618 original size:18 final size:19
Alignment explanation
Indices: 75967566--75967622 Score: 64
Period size: 18 Copynumber: 3.0 Consensus size: 19
75967556 AAATTACAAA
75967566 AAAATAATTT-TCAGAAATTC
1 AAAATAATTTAT-A-AAATTC
* *
75967586 AAAATAATTTTTAAAATTT
1 AAAATAATTTATAAAATTC
75967605 AAAAT-ATTTATAAAATTC
1 AAAATAATTTATAAAATTC
75967623 CAATATTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 11 0.33
19 10 0.30
20 11 0.33
21 1 0.03
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATAATTTATAAAATTC
Found at i:75968097 original size:11 final size:11
Alignment explanation
Indices: 75968083--75968122 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
75968073 TGTTTTCTCC
75968083 CTATTTTGCTA
1 CTATTTTGCTA
*
75968094 CTATTTTACTA
1 CTATTTTGCTA
* *
75968105 TTATGTTGCTA
1 CTATTTTGCTA
75968116 CTATTTT
1 CTATTTT
75968123 ATTGTTATAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.57
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:75968208 original size:30 final size:30
Alignment explanation
Indices: 75968163--75968221 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
75968153 TATTTTATTG
*
75968163 TTAAATTTGTTATTATTTTAAAGGAATTTA
1 TTAAATTTATTATTATTTTAAAGGAATTTA
* * *
75968193 TTAATTTTATTATTATTTTAGAGGCATTT
1 TTAAATTTATTATTATTTTAAAGGAATTT
75968222 GCTTGTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (30 bp):
TTAAATTTATTATTATTTTAAAGGAATTTA
Found at i:75968707 original size:28 final size:29
Alignment explanation
Indices: 75968653--75968728 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
75968643 TAATAGTCTA
* *
75968653 TAATTTTATAATTTTTAAAAGATTAAA-T-
1 TAATTTTATCA-TTTTAAAAGACTAAAGTG
*
75968681 TAGATTTTATCATTTTAAAAGGCTAAAGTG
1 TA-ATTTTATCATTTTAAAAGACTAAAGTG
75968711 TAATTTTATCATTATTAA
1 TAATTTTATCATT-TTAA
75968729 TTTAAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 15 0.37
29 20 0.49
30 6 0.15
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (29 bp):
TAATTTTATCATTTTAAAAGACTAAAGTG
Found at i:75986848 original size:20 final size:20
Alignment explanation
Indices: 75986809--75986848 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75986799 AGCCACACTA
* *
75986809 GCGTGTGGGAGGTTATACGG
1 GCGTGTGGGAGGTCACACGG
*
75986829 GCGTGTGTGAGGTCACACGG
1 GCGTGTGGGAGGTCACACGG
75986849 ATATGGGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.15, G:0.47, T:0.23
Consensus pattern (20 bp):
GCGTGTGGGAGGTCACACGG
Found at i:75987666 original size:13 final size:13
Alignment explanation
Indices: 75987645--75987684 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
75987635 GGAGCAATCG
*
75987645 CACATGGGCGTGT
1 CACACGGGCGTGT
75987658 CACACGGGCGTGT
1 CACACGGGCGTGT
*
75987671 CACACAGGCGTGT
1 CACACGGGCGTGT
75987684 C
1 C
75987685 CCTGCTGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:75996334 original size:55 final size:54
Alignment explanation
Indices: 75996214--75996335 Score: 122
Period size: 55 Copynumber: 2.2 Consensus size: 54
75996204 GAGCTTGCCA
* *
75996214 AAAC-AACACGGGTGTTCGACACACCCGTGCCTCGAAACCATGGGCGAACCTGTC
1 AAACTAACACGGGCGTTCGACACACCCGTGCCTC-AAACCATGGGCGAACCTATC
* * * * *
75996268 AAACTAGCACGGGCGTTCGACACACCCTTGCC-CATCATCCGTGGGTGAACCTATC
1 AAACTAACACGGGCGTTCGACACACCCGTGCCTCA--AACCATGGGCGAACCTATC
**
75996323 AAGTTAACACGGG
1 AAACTAACACGGG
75996336 TGTGGACCTA
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 1 0.02
54 5 0.09
55 49 0.89
ACGTcount: A:0.27, C:0.32, G:0.24, T:0.17
Consensus pattern (54 bp):
AAACTAACACGGGCGTTCGACACACCCGTGCCTCAAACCATGGGCGAACCTATC
Found at i:75998388 original size:54 final size:54
Alignment explanation
Indices: 75998329--75998438 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
75998319 TTATTAGGTT
*
75998329 TTATAATTATTATTTTACAATTTTTAATTTCGGCTAATTCATTACGAGAACTTA
1 TTATAATTATTATTTTACAATTTTTAATTTCGACTAATTCATTACGAGAACTTA
*
75998383 TTATAATTATTATTTTACAATTTTTAATTTCGACTAATTCATTATGAGAACTTA
1 TTATAATTATTATTTTACAATTTTTAATTTCGACTAATTCATTACGAGAACTTA
75998437 TT
1 TT
75998439 CTTCCTTATA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (54 bp):
TTATAATTATTATTTTACAATTTTTAATTTCGACTAATTCATTACGAGAACTTA
Found at i:76000529 original size:46 final size:46
Alignment explanation
Indices: 76000462--76000590 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 46
76000452 TGTGACCCAC
* * * * *
76000462 CCATAAGCGGACTCGGACTCAACTCAATGA-TCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACGTTCACAT
76000508 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
*
76000554 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76000591 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 75 0.99
47 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:76002930 original size:29 final size:28
Alignment explanation
Indices: 76002875--76002930 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
76002865 GATATATACA
* *
76002875 ATATAAAAATATATAAAAGAATTAGTAT
1 ATATAAAAATATATAAAAAAATGAGTAT
76002903 ATATAAAAA-ATATAAAATAAAGTGAGTA
1 ATATAAAAATATATAAAA-AAA-TGAGTA
76002931 ATTGTTAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (28 bp):
ATATAAAAATATATAAAAAAATGAGTAT
Found at i:76003078 original size:16 final size:15
Alignment explanation
Indices: 76003037--76003088 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 15
76003027 TGAAACATAA
76003037 ATAATATAATAGATGAT
1 ATAATATAAT-GAT-AT
76003054 ATACGATATACATGATAT
1 ATA--ATATA-ATGATAT
76003072 ATAATATAAT-ATAT
1 ATAATATAATGATAT
76003086 ATA
1 ATA
76003089 CATGCATAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.22
15 2 0.06
16 5 0.16
17 3 0.09
18 5 0.16
19 8 0.25
20 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (15 bp):
ATAATATAATGATAT
Found at i:76003507 original size:19 final size:19
Alignment explanation
Indices: 76003459--76003570 Score: 138
Period size: 19 Copynumber: 5.8 Consensus size: 19
76003449 AAATTAAATC
* *
76003459 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
76003479 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
* *
76003500 TCCAAGATTGCATGTCATA
1 TCTAAGATTGCATATCATA
76003519 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
76003536 TCTAAGATTGCATATCGTA
1 TCTAAGATTGCATATCATA
76003555 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
76003571 CTTAAAGATT
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
17 16 0.20
19 46 0.57
20 2 0.02
21 10 0.12
22 7 0.09
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76003536 original size:36 final size:37
Alignment explanation
Indices: 76003473--76003570 Score: 126
Period size: 36 Copynumber: 2.6 Consensus size: 37
76003463 AGATTACAAG
76003473 ATCATATCTTCAAGATTGCATATCATATCCAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCCAAGATTGCAT
* *
76003513 GTCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCCAAGATTGCAT
*
76003549 ATCGTATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
76003571 CTTAAAGATT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
36 33 0.63
38 11 0.21
39 1 0.02
40 7 0.13
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCCAAGATTGCAT
Found at i:76003570 original size:14 final size:15
Alignment explanation
Indices: 76003512--76003551 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
76003502 CAAGATTGCA
76003512 TGTCATATCTAAGAT
1 TGTCATATCTAAGAT
76003527 TGTATCATATCTAAGAT
1 TG--TCATATCTAAGAT
76003544 TG-CATATC
1 TGTCATATC
76003552 GTATCTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 2 0.09
17 15 0.65
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (15 bp):
TGTCATATCTAAGAT
Found at i:76003580 original size:17 final size:19
Alignment explanation
Indices: 76003484--76003580 Score: 85
Period size: 19 Copynumber: 5.3 Consensus size: 19
76003474 TCATATCTTC
* *
76003484 AAGATTGCATATCATATCC
1 AAGATTGCATATCCTATCA
* * *
76003503 AAGATTGCATGTCATATCT
1 AAGATTGCATATCCTATCA
* *
76003522 AAGATTG--TATCATATCT
1 AAGATTGCATATCCTATCA
* *
76003539 AAGATTGCATATCGTATCT
1 AAGATTGCATATCCTATCA
76003558 AAGATTGCATATCCT-T-A
1 AAGATTGCATATCCTATCA
76003575 AAGATT
1 AAGATT
76003581 ATATTTCCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
17 22 0.31
18 1 0.01
19 47 0.67
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCCTATCA
Found at i:76004458 original size:44 final size:44
Alignment explanation
Indices: 76004386--76004493 Score: 153
Period size: 44 Copynumber: 2.4 Consensus size: 44
76004376 ACACGTGAAA
* * *
76004386 GCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATATGCTCTCCGACAATACAGAGAT
* *
76004432 GCCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGAT
1 GCCAAATCTGCTATCTTCGATATGCTCTCCGACAATACAGAGAT
76004476 GCCAAATCTGCTATCTTC
1 GCCAAATCTGCTATCTTC
76004494 AACTTGTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 45 0.79
46 12 0.21
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATATGCTCTCCGACAATACAGAGAT
Found at i:76004518 original size:44 final size:44
Alignment explanation
Indices: 76004424--76004655 Score: 170
Period size: 44 Copynumber: 5.3 Consensus size: 44
76004414 CTCCGCCAAT
* * * * *
76004424 ACAGAGATGCCAAATCTGCTATCTTCGA-TATGCTCTCTGA-CAAT
1 ACAGAGATGCCAAATCTGCTATCTTCAACT-TGTTCCCT-ATAAAC
*
76004468 ATAGAGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
1 ACAGAGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
** * * ** * * *
76004512 ACAGAGATGCC--ATGCTGAAATCCTCGATCTACTTCGCTGTAAGC
1 ACAGAGATGCCAAAT-CTGCTATCTTC-AACTTGTTCCCTATAAAC
* ** *
76004556 ACAG-GAGTGCCAGATCTATTATCTTCGA-TCTGTTCCCTATAAAC
1 ACAGAGA-TGCCAAATCTGCTATCTTCAACT-TGTTCCCTATAAAC
*
76004600 ACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
1 ACAGAGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
* *
76004644 GCAGGGATGCCA
1 ACAGAGATGCCA
76004656 TGCTGAAATC
Statistics
Matches: 146, Mismatches: 32, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
42 2 0.01
43 12 0.08
44 119 0.82
45 11 0.08
46 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
ACAGAGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAAC
Found at i:76004613 original size:132 final size:132
Alignment explanation
Indices: 76004473--76004748 Score: 453
Period size: 132 Copynumber: 2.1 Consensus size: 132
76004463 ACAATATAGA
76004473 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGCTGAAATCCTCG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGCTGAAATCCTCG
* * *
76004538 ATCTACTTCGCTGTAAGCACAGGAGTGCCAGATCTATTATCTTCGATCTGTTCCCTATAAACACA
66 ATCTACTTCGCTGTAAGCACAGGAATGCCAGATCTACTATCTTCGATCTGTTCCCTATAAAAACA
*
76004603 GG
131 AG
* * *
76004605 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACGCAGGGATGCCATGCTGAAATCTTCG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGCTGAAATCCTCG
* * * *
76004670 ATCTGCTTTGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAAAACA
66 ATCTACTTCGCTGTAAGCACAGGAATGCCAGATCTACTATCTTCGATCTGTTCCCTATAAAAACA
76004735 AG
131 AG
76004737 GATGCCAAATCT
1 GATGCCAAATCT
76004749 TGTTTCTTTG
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (132 bp):
GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGCTGAAATCCTCG
ATCTACTTCGCTGTAAGCACAGGAATGCCAGATCTACTATCTTCGATCTGTTCCCTATAAAAACA
AG
Found at i:76004655 original size:88 final size:88
Alignment explanation
Indices: 76004576--76004744 Score: 200
Period size: 88 Copynumber: 1.9 Consensus size: 88
76004566 CAGATCTATT
*
76004576 ATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTA
1 ATCTTCGATCTGCTTCCCTATAAACACAGGAATGCCAAATCTGCTATCTTCAATC-TGTTCCCTA
** *
76004639 TAAACGCAGGGATGCC-ATGCTGAA
65 TAAAAACAAGGATGCCAAT-CTGAA
** * * * * *
76004663 ATCTTCGATCTGCTTTGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCCCTATAAACACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTAT
76004728 AAAAACAAGGATGCCAA
66 AAAAACAAGGATGCCAA
76004745 ATCTTGTTTC
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 12 0.18
88 54 0.79
89 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (88 bp):
ATCTTCGATCTGCTTCCCTATAAACACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTAT
AAAAACAAGGATGCCAATCTGAA
Found at i:76005662 original size:6 final size:7
Alignment explanation
Indices: 76005643--76005671 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
76005633 TTGGCCTCTC
76005643 TATTTTT
1 TATTTTT
76005650 TATTTTT
1 TATTTTT
76005657 TATTTTT
1 TATTTTT
76005664 TATTTTT
1 TATTTTT
76005671 T
1 T
76005672 CCTCTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TATTTTT
Found at i:76005685 original size:21 final size:21
Alignment explanation
Indices: 76005661--76005701 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76005651 ATTTTTTATT
76005661 TTTTATTTTTTCCTCTTTTTC
1 TTTTATTTTTTCCTCTTTTTC
* *
76005682 TTTTCTTTTTTCCTTTTTTT
1 TTTTATTTTTTCCTCTTTTT
76005702 TGAAACAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTATTTTTTCCTCTTTTTC
Found at i:76012041 original size:29 final size:28
Alignment explanation
Indices: 76011986--76012041 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
76011976 GATATATACA
* *
76011986 ATATAAAAATATATAAAAGAATTAGTAT
1 ATATAAAAATATATAAAAAAATGAGTAT
76012014 ATATAAAAA-ATATAAAATAAAGTGAGTA
1 ATATAAAAATATATAAAA-AAA-TGAGTA
76012042 ATTGTTAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (28 bp):
ATATAAAAATATATAAAAAAATGAGTAT
Found at i:76012188 original size:16 final size:15
Alignment explanation
Indices: 76012147--76012198 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 15
76012137 TGAAACATAA
76012147 ATAATATAATAGATGAT
1 ATAATATAAT-GAT-AT
76012164 ATACGATATACATGATAT
1 ATA--ATATA-ATGATAT
76012182 ATAATATAAT-ATAT
1 ATAATATAATGATAT
76012196 ATA
1 ATA
76012199 CATGCATAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.22
15 2 0.06
16 5 0.16
17 3 0.09
18 5 0.16
19 8 0.25
20 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (15 bp):
ATAATATAATGATAT
Found at i:76012618 original size:19 final size:19
Alignment explanation
Indices: 76012583--76012677 Score: 149
Period size: 19 Copynumber: 5.0 Consensus size: 19
76012573 AGATTACAAG
76012583 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
76012604 ATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76012623 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
76012640 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76012659 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76012678 TTCCTTAAAG
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
17 17 0.24
19 45 0.64
20 1 0.01
21 7 0.10
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:76012652 original size:36 final size:37
Alignment explanation
Indices: 76012583--76012674 Score: 141
Period size: 36 Copynumber: 2.4 Consensus size: 37
76012573 AGATTACAAG
*
76012583 ATCATATCTTCAAGATTGCATATCATATTTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
76012623 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
76012659 ATCATATCTAAGATTG
1 ATCATATCTAAGATTG
76012675 CATTTCCTTA
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
36 35 0.69
38 7 0.14
39 1 0.02
40 8 0.16
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:76012661 original size:14 final size:15
Alignment explanation
Indices: 76012624--76012661 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
76012614 AGATTGCATA
76012624 TCATATCTAAGATTG
1 TCATATCTAAGATTG
76012639 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
76012656 -CATATC
1 TCATATC
76012662 ATATCTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:76016973 original size:602 final size:602
Alignment explanation
Indices: 76015829--76017013 Score: 2118
Period size: 602 Copynumber: 2.0 Consensus size: 602
76015819 TACATATCTT
* * *
76015829 GAGTTACGAAACTCAAAATCCAATTCCGTAAATTTTCCTTGAAATTAGACTTATATATATAGTTA
1 GAGTTACGAAACTCAAAATCCAATTCCGTAAATTTTCCTTGAAACTAGACTCATATATATACTTA
76015894 CTAATTTTTTTCTAGAATTTTTGGTCCAGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTG
66 CTAATTTTTTTCTAGAATTTTTGGTCCAGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTG
*
76015959 TTTCAAGGTTCGGCTACTCTGACCCCTGTAAATTACGAATCAGATATCTCCCTGTGCACTATTTC
131 TTTCAAGGTTCGGCTACTCTGACCCCTGTAAATTACGAATCAAATATCTCCCTGTGCACTATTTC
* *
76016024 AATGACTATTCCATTTATTTATAATAAAACTAGACTCAATAAGGAATCCATACATATAACATTTG
196 AATGACTATTCCATTTATTTATAATAAAACTAGACTCAATAAGGAATCCATACATATAAAATATG
*
76016089 AGTCCTAATTATTTTTACACAATTTATGGTGAATTTATAAAGTCAGAACAGGGGATCTAGAAATC
261 AGTCCTAATTATTTTTACACAATTTATGGTGAATTTATAAAGTCAGAACAGGGGATCCAGAAATC
* *
76016154 GCTTTGACCCTGTTTCACCAAAACGTAAATATCTCATAAAATACAACTTTTTTACCTATTTTGTT
326 GCTCTGACCCTATTTCACCAAAACGTAAATATCTCATAAAATACAACTTTTTTACCTATTTTGTT
*
76016219 TCTTCCACATGAAAATAGATTCATTAAGATTAAATTAAATATTTTATTAATCATCTAATTCTATT
391 TCTTCCACATGAAAATAGATTCATTAAGATTAAATTAAATATTTTATTAATCATCTAATTATATT
*
76016284 TCTACTATTTTTAGTGATTTTTCAAATTCACGTCACTGCTGCTGTGTGATTCTGTTTTATAGCCA
456 TATACTATTTTTAGTGATTTTTCAAATTCACGTCACTGCTGCTGTGTGATTCTGTTTTATAGCCA
*
76016349 ATTTCACCATTTTATGGATTTCCATAGATTAGTTAGCACATAAAGCATACGTGTTATCAAATAAT
521 ATTTCACCATTTTATGGATTTCCATAGATTAGTTAGCACATAAAGCATACGTATTATCAAATAAT
76016414 ATATAATTACGAATCAC
586 ATATAATTACGAATCAC
** * *
76016431 GAGTTACGAAACTTGAAATCCAATTCCGTAAATTTTTCTTGAAACTAGACTCATATATCTACTTA
1 GAGTTACGAAACTCAAAATCCAATTCCGTAAATTTTCCTTGAAACTAGACTCATATATATACTTA
**
76016496 CTAATTTTTTTCTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTG
66 CTAATTTTTTTCTAGAATTTTTGGTCCAGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTG
* *
76016561 TTTCAAGGTTCGGCTACTCTGACCCCTGTGAATTACGAATTAAATATCTCCCTGTGCACTATTTC
131 TTTCAAGGTTCGGCTACTCTGACCCCTGTAAATTACGAATCAAATATCTCCCTGTGCACTATTTC
* * * * *
76016626 AATGACTATTCCATTTGTTTTTCATAAAACTAGACTCAATAAGTAATCCATACATTTAAAATATG
196 AATGACTATTCCATTTATTTATAATAAAACTAGACTCAATAAGGAATCCATACATATAAAATATG
*
76016691 AGTCCTAATTATTTTTACACAATTTATGGTGAATTTATAAAGTCAGAACAGTGGATCCAGAAATC
261 AGTCCTAATTATTTTTACACAATTTATGGTGAATTTATAAAGTCAGAACAGGGGATCCAGAAATC
76016756 GCTCTGACCCTATTTCACCAAAACGTAAATATCTCATAAAATACAACTTTTTTACCTATTTTGTT
326 GCTCTGACCCTATTTCACCAAAACGTAAATATCTCATAAAATACAACTTTTTTACCTATTTTGTT
* *
76016821 TCTTCCACATGAAAATAGATTCATTAAGCTTCAATTAAATATTTTATTAATCATCTAATTATATT
391 TCTTCCACATGAAAATAGATTCATTAAGATTAAATTAAATATTTTATTAATCATCTAATTATATT
76016886 TATACTATTTTTAGTGATTTTTCAAATTCACGTCACTGCTGCTGTGTGATTCTGTTTTATAGCCA
456 TATACTATTTTTAGTGATTTTTCAAATTCACGTCACTGCTGCTGTGTGATTCTGTTTTATAGCCA
76016951 ATTTCACCATTTTATGGATTTCCATAGATTAGTTAGCACATAAAGCATACGTATTATCAAATA
521 ATTTCACCATTTTATGGATTTCCATAGATTAGTTAGCACATAAAGCATACGTATTATCAAATA
76017014 TAATCTCGAT
Statistics
Matches: 555, Mismatches: 28, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
602 555 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (602 bp):
GAGTTACGAAACTCAAAATCCAATTCCGTAAATTTTCCTTGAAACTAGACTCATATATATACTTA
CTAATTTTTTTCTAGAATTTTTGGTCCAGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTG
TTTCAAGGTTCGGCTACTCTGACCCCTGTAAATTACGAATCAAATATCTCCCTGTGCACTATTTC
AATGACTATTCCATTTATTTATAATAAAACTAGACTCAATAAGGAATCCATACATATAAAATATG
AGTCCTAATTATTTTTACACAATTTATGGTGAATTTATAAAGTCAGAACAGGGGATCCAGAAATC
GCTCTGACCCTATTTCACCAAAACGTAAATATCTCATAAAATACAACTTTTTTACCTATTTTGTT
TCTTCCACATGAAAATAGATTCATTAAGATTAAATTAAATATTTTATTAATCATCTAATTATATT
TATACTATTTTTAGTGATTTTTCAAATTCACGTCACTGCTGCTGTGTGATTCTGTTTTATAGCCA
ATTTCACCATTTTATGGATTTCCATAGATTAGTTAGCACATAAAGCATACGTATTATCAAATAAT
ATATAATTACGAATCAC
Found at i:76017649 original size:46 final size:47
Alignment explanation
Indices: 76017582--76017756 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 47
76017572 TGTAACCCAC
* *
76017582 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCATTCT-CAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTACAT
* *
76017628 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATTCCTACTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATT-CTACAT
* * * * * *
76017674 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTT-TGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTACAT
* * * *
76017721 CCGTAAGTGAACTCGGACTCAACTGAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
76017757 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 6 0.06
46 62 0.59
47 29 0.28
48 3 0.03
49 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTACAT
Found at i:76017698 original size:93 final size:93
Alignment explanation
Indices: 76017589--76017758 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
76017579 CACCCATAAG
* *
76017589 CGAACTCAGACTCAACTCAATGAGCTCGGGCATTCT-CATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATT-TGCATCCATAAGTGAACTCGGACTCAACTC
76017653 AACGAGCTCGGATTCCTACTTACATCTCA
65 AACGAGCTCGGATTCCTACTTACATCTCA
* * * * *
76017682 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCATCCGTAAGTGAACTCGGACTCAACTGA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
*
76017747 ACGAGTTCGGAT
66 ACGAGCTCGGAT
76017759 GCCCAAATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATTCCTACTTACATCTCA
Found at i:76019909 original size:31 final size:31
Alignment explanation
Indices: 76019864--76019978 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
76019854 TTAGTCTTGA
76019864 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
76019894 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
76019925 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
76019956 CATTTCTCTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
76019979 ACTGTAAACG
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:76020049 original size:42 final size:42
Alignment explanation
Indices: 76020002--76020093 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
76019992 TGGCCCATAG
* * *
76020002 GCCCATTTCAATATCACATGTAATATCAAT-AGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGA-ACGTATGCAA
*
76020044 GCCCATTTCAATATCATATGAAATACCAATGAACGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAACGTATGCAA
76020086 GCCCATTT
1 GCCCATTT
76020094 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAACGTATGCAA
Found at i:76020275 original size:25 final size:26
Alignment explanation
Indices: 76020249--76020361 Score: 174
Period size: 26 Copynumber: 4.4 Consensus size: 26
76020239 AACTAGGACA
**
76020249 AAGCCCTTTTCGGTAAACTGGGGCA-
1 AAGCCCTTTTCAATAAACTGGGGCAT
76020274 AAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
**
76020300 AAGCCCTTTTGGATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
*
76020326 AAGCCCTTTTCAATAAACTAGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
76020352 AAGCCCTTTT
1 AAGCCCTTTT
76020362 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 23 0.29
26 57 0.71
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
AAGCCCTTTTCAATAAACTGGGGCAT
Found at i:76020350 original size:52 final size:50
Alignment explanation
Indices: 76020226--76020362 Score: 199
Period size: 52 Copynumber: 2.7 Consensus size: 50
76020216 CTGGAGGCCT
*
76020226 AGCCTCTTTT-AAT-AACTAGGACA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTAGGGCATAAGCCCTTTT-GGTAAACTGGGGCAA
*
76020275 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTGGATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTGG-TAAACTGGGGCA-A
76020327 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTG
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTG
76020363 CACTTCCTCC
Statistics
Matches: 80, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 22 0.28
52 36 0.45
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTGGTAAACTGGGGCAA
Found at i:76020438 original size:20 final size:20
Alignment explanation
Indices: 76020413--76020507 Score: 117
Period size: 20 Copynumber: 4.8 Consensus size: 20
76020403 ATGAATACAA
*
76020413 CATGTGCATTTCATA-CATAT
1 CATGTGCATATCATATCA-AT
*
76020433 CATGTGCATTTCATA-CATAT
1 CATGTGCATATCATATCA-AT
76020453 CATGTGCATATCATATCAAT
1 CATGTGCATATCATATCAAT
*
76020473 CATGTGTATATCATATCAAT
1 CATGTGCATATCATATCAAT
76020493 CATGT--ATATCATATC
1 CATGTGCATATCATATC
76020508 CTACGTATCA
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
18 10 0.14
20 60 0.83
21 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
CATGTGCATATCATATCAAT
Found at i:76020462 original size:11 final size:11
Alignment explanation
Indices: 76020428--76020486 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
76020418 GCATTTCATA
76020428 CATATCATGTG
1 CATATCATGTG
* *
76020439 CATTTCA--TA
1 CATATCATGTG
76020448 CATATCATGTG
1 CATATCATGTG
*
76020459 CATATCATAT-
1 CATATCATGTG
76020469 CA-ATCATGTG
1 CATATCATGTG
*
76020479 TATATCAT
1 CATATCAT
76020487 ATCAATCATG
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
9 13 0.35
10 3 0.08
11 21 0.57
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (11 bp):
CATATCATGTG
Found at i:76021352 original size:27 final size:27
Alignment explanation
Indices: 76021322--76021429 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
76021312 GTAAATCTAC
76021322 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
76021349 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
76021375 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTTAGTAATTTTGT
* * * *
76021405 AAATCAGGGGTGTTTTGGTAATTTT
1 AAACCAAGGGTATTTTAGTAATTTT
76021430 ACAAACTAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 40 0.59
28 9 0.13
29 17 0.25
30 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:76021516 original size:27 final size:27
Alignment explanation
Indices: 76021486--76021768 Score: 167
Period size: 27 Copynumber: 10.4 Consensus size: 27
76021476 GTAATTTCAT
** * *
76021486 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTATA
*
76021513 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
* * *
76021540 AATTGAGGGTAAAACAGTAATGCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
*** * *
76021567 AATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTCTATA
* ** * *
76021593 CAAGTTGAGGGT-ATTTCAGTAATTTTACA
1 -AA-TCGAGGGTAAAAT-AGTAATTCTATA
* *** * *
76021622 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTAAAATAGTAATTCTATA
* * *** * *
76021650 AACCAAGGGTATTTTAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTATA
76021677 AATCGAGGGTAAAAT-GATAATTCTATA
1 AATCGAGGGTAAAATAG-TAATTCTATA
* * *
76021704 AATCGAGGATAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATAGTAATTCTATA
* * *
76021731 AATCGAGGGTAGAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTATA
76021758 AATCGAGGGTA
1 AATCGAGGGTA
76021769 CTTTGGTAAT
Statistics
Matches: 203, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
26 4 0.02
27 158 0.78
28 36 0.18
29 5 0.02
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTATA
Found at i:76021625 original size:55 final size:54
Alignment explanation
Indices: 76021566--76021687 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 54
76021556 GTAATGCTAT
* ****
76021566 AAATCGAGGGTACTTTGGTAATTTTTACAAGTTGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTACTTTAGTAA-TTTTACAAACCAAGGGTATTTCAGTAATTTTAC
* * * **
76021621 AAATCAGGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGT
1 AAATC-GAGGGTACTTTAGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTAC
76021676 AAATCGAGGGTA
1 AAATCGAGGGTA
76021688 AAATGATAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
54 6 0.11
55 36 0.65
56 13 0.24
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTACTTTAGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTAC
Found at i:76021632 original size:28 final size:27
Alignment explanation
Indices: 76021600--76021673 Score: 112
Period size: 28 Copynumber: 2.7 Consensus size: 27
76021590 TTACAAGTTG
* *
76021600 AGGGTATTTCAGTAATTTTACAAATCA
1 AGGGTATTTTAGTAATTTTACAAACCA
*
76021627 GGGGGTATTTTAGTAATTTTACAAACCA
1 -AGGGTATTTTAGTAATTTTACAAACCA
76021655 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTAGTAATTTT
76021674 GTAAATCGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 18 0.43
28 24 0.57
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACCA
Found at i:76026915 original size:18 final size:18
Alignment explanation
Indices: 76026892--76026994 Score: 71
Period size: 18 Copynumber: 5.4 Consensus size: 18
76026882 ACATCGTGAT
76026892 CTGAAGCCCGAAGTCTAA
1 CTGAAGCCCGAAGTCTAA
**
76026910 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* * *
76026931 CGGAAGCCCAAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
**
76026949 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* *
76026970 CGGAAGCCCGAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
76026988 CTGAAGC
1 CTGAAGC
76026995 TCACTAGAGC
Statistics
Matches: 64, Mismatches: 15, Indels: 12
0.70 0.16 0.13
Matches are distributed among these distances:
18 23 0.36
19 13 0.20
20 12 0.19
21 16 0.25
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.14
Consensus pattern (18 bp):
CTGAAGCCCGAAGTCTAA
Found at i:76026936 original size:21 final size:21
Alignment explanation
Indices: 76026912--76026976 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
76026902 AAGTCTAACT
76026912 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
* *
76026933 GAAGCCCA-AAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
76026951 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
76026972 GAAGC
1 GAAGC
76026977 CCGAAGGCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
18 10 0.27
19 6 0.16
20 6 0.16
21 15 0.41
ACGTcount: A:0.42, C:0.22, G:0.25, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:76026949 original size:39 final size:39
Alignment explanation
Indices: 76026894--76026994 Score: 184
Period size: 39 Copynumber: 2.6 Consensus size: 39
76026884 ATCGTGATCT
*
76026894 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
76026933 GAAGCCCAAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
76026972 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
76026995 TCACTAGAGC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.39, C:0.24, G:0.25, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:76043516 original size:18 final size:18
Alignment explanation
Indices: 76043493--76043528 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76043483 TTGAATGTTC
76043493 ATTGTATGAAAATTGATG
1 ATTGTATGAAAATTGATG
76043511 ATTGTATGAAAATTGATG
1 ATTGTATGAAAATTGATG
76043529 GAACATTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (18 bp):
ATTGTATGAAAATTGATG
Found at i:76043941 original size:46 final size:46
Alignment explanation
Indices: 76043889--76044105 Score: 292
Period size: 46 Copynumber: 4.7 Consensus size: 46
76043879 GTGTGCTCTT
* * *
76043889 TGATATGAAATGTGTAAGACCATGGTTGAAACATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
76043935 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
** * * *
76043981 TGATGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
76044027 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
76044073 TGACA-GAAAATGAGTAAGATCATAGTTGAAAGA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGA
76044106 CACAATAGAA
Statistics
Matches: 154, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 153 0.99
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:76044410 original size:17 final size:17
Alignment explanation
Indices: 76044383--76044430 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
76044373 GATGGTGCAT
76044383 GAAAT-ATTGATATAAC
1 GAAATGATTGATATAAC
76044399 GAAATGATTGATATAAC
1 GAAATGATTGATATAAC
76044416 GAAATGATTGATATA
1 GAAATGATTGATATA
76044431 TACTTATGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 5 0.16
17 26 0.84
ACGTcount: A:0.48, C:0.04, G:0.17, T:0.31
Consensus pattern (17 bp):
GAAATGATTGATATAAC
Found at i:76047295 original size:12 final size:13
Alignment explanation
Indices: 76047278--76047337 Score: 63
Period size: 12 Copynumber: 4.8 Consensus size: 13
76047268 GCATTGAGTC
76047278 TATTTTT-TTATT
1 TATTTTTATTATT
76047290 TATTTTTATTATT
1 TATTTTTATTATT
*
76047303 CAATTTTTATT-TT
1 -TATTTTTATTATT
*
76047316 TATTTTT-TTGTT
1 TATTTTTATTATT
*
76047328 TATTTGTATT
1 TATTTTTATT
76047338 TCCTAGACTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
11 2 0.05
12 21 0.51
13 9 0.22
14 9 0.22
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (13 bp):
TATTTTTATTATT
Found at i:76047321 original size:5 final size:6
Alignment explanation
Indices: 76047278--76047338 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
76047268 GCATTGAGTC
*
76047278 TATTTT T-TTATT TATTTT TATTATT CAATTTT TATTTT TATTTT T-TTGTT
1 TATTTT TATT-TT TATTTT TATT-TT -TATTTT TATTTT TATTTT TATT-TT
*
76047328 TATTTG TATTT
1 TATTTT TATTT
76047339 CCTAGACTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
5 4 0.09
6 31 0.67
7 8 0.17
8 3 0.07
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:76047332 original size:24 final size:26
Alignment explanation
Indices: 76047276--76047338 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
76047266 GAGCATTGAG
76047276 TCTATTTTT-TTATTTATTTTTATTAT
1 TCTATTTTTATT-TTTATTTTTATTAT
* *
76047302 TCAATTTTTATTTTTATTTTT-TTGT
1 TCTATTTTTATTTTTATTTTTATTAT
*
76047327 T-TATTTGTATTT
1 TCTATTTTTATTT
76047339 CCTAGACTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 9 0.28
25 4 0.12
26 17 0.53
27 2 0.06
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.76
Consensus pattern (26 bp):
TCTATTTTTATTTTTATTTTTATTAT
Found at i:76048345 original size:26 final size:26
Alignment explanation
Indices: 76048309--76048360 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
76048299 TGATCTAAAA
*
76048309 AAAAAGTAAAAAAATGTATACTTATT
1 AAAAAGTAAAAAAAAGTATACTTATT
76048335 AAAAAGTAAAAAAAAGTATACTTATT
1 AAAAAGTAAAAAAAAGTATACTTATT
76048361 TTGGTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAAAGTAAAAAAAAGTATACTTATT
Found at i:76052806 original size:30 final size:30
Alignment explanation
Indices: 76052749--76052806 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
76052739 TATAATTTCA
* *
76052749 TTTTATTTTTATTTTAATTTGGCCCTAACC
1 TTTTATTTTTATTTCAATTTAGCCCTAACC
* * *
76052779 TTTTATTTTTGTTTCACTTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGCCCTAA
76052807 TGGCCATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.19, C:0.16, G:0.07, T:0.59
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAACC
Found at i:76052989 original size:29 final size:29
Alignment explanation
Indices: 76052945--76053012 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
76052935 TAGAGTTTTG
76052945 TTTTTAT-T-TAATTTTAATCCT-TTTTAAA
1 TTTTTATATATAATTTT-AT-CTATTTTAAA
*
76052973 TTTTTATATATAA-TTTATTTATTTTAAA
1 TTTTTATATATAATTTTATCTATTTTAAA
76053001 TATTTTATATAT
1 T-TTTTATATAT
76053013 TATCTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
27 1 0.03
28 17 0.49
29 14 0.40
30 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTTATATATAATTTTATCTATTTTAAA
Found at i:76053020 original size:29 final size:28
Alignment explanation
Indices: 76052966--76053021 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
76052956 TTTTAATCCT
*
76052966 TTTTAAATTTTTATATATAATTTATTTA
1 TTTTAAATTTTTATATATAATCTATTTA
*
76052994 TTTTAAATATTTTATATATTATCTATTT
1 TTTTAAAT-TTTTATATATAATCTATTT
76053022 TTACTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTTAAATTTTTATATATAATCTATTTA
Found at i:76053091 original size:7 final size:7
Alignment explanation
Indices: 76053054--76053169 Score: 76
Period size: 7 Copynumber: 15.1 Consensus size: 7
76053044 ATGTAAAAAA
76053054 TTATTAT
1 TTATTAT
76053061 ATATATTAT
1 -T-TATTAT
76053070 TT-TTAT
1 TTATTAT
76053076 TTATGTA-
1 TTAT-TAT
76053083 TTATTTAT
1 TTA-TTAT
76053091 TATATTAT
1 T-TATTAT
76053099 TTA-TATT
1 TTATTA-T
76053106 TTATTAT
1 TTATTAT
*
76053113 ATATTTTAT
1 -T-TATTAT
76053122 TTATATATT
1 TTAT-TA-T
76053131 TTATTATAT
1 TTA-T-TAT
76053140 TATATTAT
1 T-TATTAT
*
76053148 ATATTAT
1 TTATTAT
76053155 TTATTAT
1 TTATTAT
76053162 TTATTAT
1 TTATTAT
76053169 T
1 T
76053170 ATGCATAATT
Statistics
Matches: 90, Mismatches: 4, Indels: 29
0.73 0.03 0.24
Matches are distributed among these distances:
6 8 0.09
7 36 0.40
8 20 0.22
9 20 0.22
10 6 0.07
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (7 bp):
TTATTAT
Found at i:76053102 original size:23 final size:23
Alignment explanation
Indices: 76053053--76053166 Score: 120
Period size: 23 Copynumber: 5.3 Consensus size: 23
76053043 TATGTAAAAA
76053053 ATTA-TTATATA-TA-TTATT-T
1 ATTATTTATATATTATTTATTAT
*
76053072 -TTATTTATGTATTATTTATTAT
1 ATTATTTATATATTATTTATTAT
*
76053094 ATTATTTATATTTTA-TTATATAT
1 ATTATTTATATATTATTTAT-TAT
*
76053117 TTTATTTATATA-T-TTTATTAT
1 ATTATTTATATATTATTTATTAT
76053138 ATTATATTATATATTATTTATTAT
1 ATTAT-TTATATATTATTTATTAT
76053162 -TTATT
1 ATTATT
76053167 ATTATGCATA
Statistics
Matches: 79, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
18 3 0.04
19 6 0.08
20 2 0.03
21 12 0.15
22 18 0.23
23 30 0.38
24 8 0.10
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (23 bp):
ATTATTTATATATTATTTATTAT
Found at i:76053110 original size:52 final size:56
Alignment explanation
Indices: 76053054--76053168 Score: 152
Period size: 56 Copynumber: 2.1 Consensus size: 56
76053044 ATGTAAAAAA
*
76053054 TTATTATATATATTATTT-T-TA-TTTA-TGTATTAT-TTATTATATTATTTA-TATT
1 TTATTATATATATTATTTATATATTTTATTATATTATATTA-TATATTATTTATTA-T
*
76053106 TTATTATATATTTTATTTATATATTTTATTATATTATATTATATATTATTTATTAT
1 TTATTATATATATTATTTATATATTTTATTATATTATATTATATATTATTTATTAT
76053162 TTATTAT
1 TTATTAT
76053169 TATGCATAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
52 17 0.31
53 1 0.02
54 2 0.04
55 4 0.07
56 26 0.47
57 5 0.09
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (56 bp):
TTATTATATATATTATTTATATATTTTATTATATTATATTATATATTATTTATTAT
Found at i:76053155 original size:33 final size:32
Alignment explanation
Indices: 76053053--76053168 Score: 104
Period size: 31 Copynumber: 3.7 Consensus size: 32
76053043 TATGTAAAAA
76053053 ATTATTATATATATTATT-TT-TATT-TATGTATT
1 ATTATT-TATATATT-TTATTATATTATAT-TATT
*
76053085 ATT-TATTATATTATTTATATTTTATTATA-TATT
1 ATTAT-TTATA-TATTT-TATTATATTATATTATT
76053118 -TTATTTATATATTTTATTATATTATATTATAT
1 ATTATTTATATATTTTATTATATTATATTAT-T
76053150 ATTATTTAT-TA-TTTATTAT
1 ATTATTTATATATTTTATTAT
76053169 TATGCATAAT
Statistics
Matches: 73, Mismatches: 1, Indels: 21
0.77 0.01 0.22
Matches are distributed among these distances:
30 11 0.15
31 22 0.30
32 19 0.26
33 15 0.21
34 4 0.05
35 2 0.03
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (32 bp):
ATTATTTATATATTTTATTATATTATATTATT
Found at i:76053181 original size:49 final size:48
Alignment explanation
Indices: 76053083--76053182 Score: 123
Period size: 49 Copynumber: 2.1 Consensus size: 48
76053073 TATTTATGTA
* **
76053083 TTATTTATTATATTATTTATATTTTATTATATATTTTATTTATATATT
1 TTATTTATTATATTATATATATTTTATTATATATTTTATGCATATATT
*
76053131 TTATTATATTATATTATATAT-TATTTATTATTTATTATTATGCATA-ATT
1 TTATT-TATTATATTATATATAT-TTTATTATATATT-TTATGCATATATT
76053180 TTA
1 TTA
76053183 AAAATTTGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
48 6 0.13
49 32 0.71
50 7 0.16
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (48 bp):
TTATTTATTATATTATATATATTTTATTATATATTTTATGCATATATT
Found at i:76065224 original size:45 final size:45
Alignment explanation
Indices: 76065175--76065780 Score: 264
Period size: 45 Copynumber: 13.5 Consensus size: 45
76065165 TTAAACGGGG
* *
76065175 AGCAGATCGAAGATAGCATATCAGACATTAGTGTATTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
* * * ** * * *
76065220 AGCAGATCGAAGAT-GACAGATTTGGCGTTTCTGTATTAGACA-GGG
1 AGCAGATCGAAGATAG-CAGATCTGACATTAGTGTATT-TACATCGA
* *
76065265 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
* * *** ** * *
76065310 AGCAGATCGAAGAT-GAAAGATTTGGTGTTTCTGTA-TTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACATTAGTGTATTTACATC--GA
* * * *
76065355 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATTGA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
* * * * * * * *
76065400 AGCAGATCGAAGAT-GACAGATTTGGC-GT-CTCTACATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACATTAGTGTA-TTTACATC--GA
* *
76065445 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACAAT-GA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTAC-ATCGA
* * * * * * *
76065490 AACAGATTGAAGAT-GACAGATTTGACGTCT-CTGTA-TTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TAGTGTATTTACATC--GA
* * * *
76065535 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTGCATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
* * * * * * *
76065580 AGCAGATCGAAAAT-GACAGATTTGGCGTCT-CTGTA-TTAGATGGGA
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TAGTGTATTTACAT-CGA
* * * *
76065625 AGTAGATCGAAGATAGCAGATCTGACATTTGTGTGTTTACATCAA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
* * * * * * *
76065670 AGCAGATCGAAAAT-GACAGATTTGGCGTCT-CTGTA-TTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TAGTGTATTTACATC--GA
* * * *
76065715 AGTAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
76065760 AGCAGATCGAAGATAGCAGAT
1 AGCAGATCGAAGATAGCAGAT
76065781 TTGGCGTCTC
Statistics
Matches: 398, Mismatches: 121, Indels: 84
0.66 0.20 0.14
Matches are distributed among these distances:
43 5 0.01
44 32 0.08
45 324 0.81
46 32 0.08
47 5 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATCTGACATTAGTGTATTTACATCGA
Found at i:76065257 original size:90 final size:90
Alignment explanation
Indices: 76065147--76065812 Score: 1021
Period size: 90 Copynumber: 7.4 Consensus size: 90
76065137 TCGAAGAAGT
* * * * * *
76065147 AGATTTGGCGTTTCTGTATTAAACGGGGAGCAGATCGAAGATAGCATATCAGACATTAGTGTATT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
76065212 TACATCGAAGCAGATCGAAGATGAC
66 TACATCGAAGCAGATCGAAGATGAC
* *
76065237 AGATTTGGCGTTTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
*
76065302 TACATCGAAGCAGATCGAAGATGAA
66 TACATCGAAGCAGATCGAAGATGAC
* * *
76065327 AGATTTGGTGTTTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
*
76065392 TACATTGAAGCAGATCGAAGATGAC
66 TACATCGAAGCAGATCGAAGATGAC
**
76065417 AGATTTGGCGTCTCTACATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
* *
76065482 TACAAT-GAAACAGATTGAAGATGAC
66 TAC-ATCGAAGCAGATCGAAGATGAC
* *
76065507 AGATTTGACGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
* *
76065572 TGCATCGAAGCAGATCGAAAATGAC
66 TACATCGAAGCAGATCGAAGATGAC
* * * *
76065597 AGATTTGGCGTCTCTGTATTAGATGGGAAGTAGATCGAAGATAGCAGATCTGACATTTGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
* *
76065662 TACATCAAAGCAGATCGAAAATGAC
66 TACATCGAAGCAGATCGAAGATGAC
* *
76065687 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGGTCGAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
76065752 TACATCGAAGCAGATCGAAGAT-AGC
66 TACATCGAAGCAGATCGAAGATGA-C
* *
76065777 AGATTTGGCGTCTCTGTATTTGACGGGGAGTAGATC
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC
76065813 AAGGATATTA
Statistics
Matches: 530, Mismatches: 43, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
89 3 0.01
90 525 0.99
91 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
TACATCGAAGCAGATCGAAGATGAC
Found at i:76067030 original size:30 final size:30
Alignment explanation
Indices: 76066994--76067051 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76066984 TATAATTTCA
* *
76066994 TTTTATTTTTATTTTAATTTGGTCCTAACC
1 TTTTATTTTTATTTCAATTTAGTCCTAACC
* *
76067024 TTTTATTTTTGTTTCACTTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGTCCTAA
76067052 TGGCCAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.14, G:0.07, T:0.60
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGTCCTAACC
Found at i:76067243 original size:29 final size:29
Alignment explanation
Indices: 76067211--76067267 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
76067201 TTTTAATCCT
* * *
76067211 TTTTAATTTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATCTATTTA
*
76067240 TTTTAAATATTTTATATATTATCTATTT
1 TTTTAAATATTTTATATATAATCTATTT
76067268 TTACTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATCTATTTA
Found at i:76067337 original size:7 final size:7
Alignment explanation
Indices: 76067300--76067465 Score: 92
Period size: 7 Copynumber: 22.1 Consensus size: 7
76067290 ATGTAAAAAA
76067300 TTATTAT
1 TTATTAT
76067307 ATATATTAT
1 -T-TATTAT
76067316 TT-TTAT
1 TTATTAT
76067322 TTATGTA-
1 TTAT-TAT
76067329 TTATTTAT
1 TTA-TTAT
76067337 TATATTAT
1 T-TATTAT
76067345 TTA-TATT
1 TTATTA-T
76067352 TTATTAT
1 TTATTAT
*
76067359 ATA-T-T
1 TTATTAT
76067364 TTATTTATT
1 TTA-TTA-T
76067373 TTATTAT
1 TTATTAT
*
76067380 ATATTAT
1 TTATTAT
* *
76067387 ATCATTTT
1 -TTATTAT
76067395 ATTATATAT
1 -TTAT-TAT
76067404 ATTATTCAT
1 -TTATT-AT
76067413 TATATTAT
1 T-TATTAT
76067421 TT-TTAT
1 TTATTAT
76067427 TTATTAT
1 TTATTAT
*
76067434 ATATTATAT
1 TTA-T-TAT
76067443 TATATTAT
1 T-TATTAT
76067451 TTATTAT
1 TTATTAT
76067458 TTATTAT
1 TTATTAT
76067465 T
1 T
76067466 ATGTATAATT
Statistics
Matches: 128, Mismatches: 10, Indels: 41
0.72 0.06 0.23
Matches are distributed among these distances:
5 3 0.02
6 15 0.12
7 45 0.35
8 34 0.27
9 29 0.23
10 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (7 bp):
TTATTAT
Found at i:76067344 original size:5 final size:5
Alignment explanation
Indices: 76067301--76067464 Score: 97
Period size: 5 Copynumber: 34.2 Consensus size: 5
76067291 TGTAAAAAAT
*
76067301 TATTA TA-TA TATTA T-TTT TATT- TATGTA TTATT- TATTA TATTA T-TTA
1 TATTA TATTA TATTA TATTA TATTA TAT-TA -TATTA TATTA TATTA TATTA
* * * *
76067348 TATTT TATTA TA-TA TTTTA T-TTA TTTTA T-TATA TATTA TATCA T-TT-
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT-TA TATTA TATTA TATTA
*
76067394 TATTA TA-TA TATTA TTCATTA TATTA T-TTT TATT- TATTATA TATTA
1 TATTA TATTA TATTA -T-ATTA TATTA TATTA TATTA TA-T-TA TATTA
76067440 TATTA TATTA T-TTA TTATT- TATTA T
1 TATTA TATTA TATTA -TATTA TATTA T
76067465 TATGTATAAT
Statistics
Matches: 129, Mismatches: 7, Indels: 46
0.71 0.04 0.25
Matches are distributed among these distances:
3 1 0.01
4 45 0.35
5 66 0.51
6 8 0.06
7 9 0.07
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (5 bp):
TATTA
Found at i:76067416 original size:76 final size:76
Alignment explanation
Indices: 76067300--76067467 Score: 220
Period size: 76 Copynumber: 2.2 Consensus size: 76
76067290 ATGTAAAAAA
* *
76067300 TTATTATATA-TATTATTTTTATTTATGTATTATTTATTATATTATTTATATTTTATTATATATT
1 TTATTATATATTATTATTTTTATTTATATATTATTCATTATATTATTTATA-TTTATTATATATT
*
76067364 TTATT-TA-T-T
65 ATATTATATTAT
*
76067373 TTATTATATATTA-TATCATTTTATTATATATATTATTCATTATATTATTTTTATTTATTATATA
1 TTATTATATATTATTAT--TTTTATT-TATATATTATTCATTATATTATTTATATTTATTATATA
76067437 TTATATTATATTAT
63 TTATATTATATTAT
*
76067451 TTATTATTTATTATTAT
1 TTATTATATATTATTAT
76067468 GTATAATTTT
Statistics
Matches: 82, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
73 13 0.16
74 2 0.02
75 24 0.29
76 26 0.32
77 1 0.01
78 13 0.16
79 3 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (76 bp):
TTATTATATATTATTATTTTTATTTATATATTATTCATTATATTATTTATATTTATTATATATTA
TATTATATTAT
Found at i:76071987 original size:22 final size:22
Alignment explanation
Indices: 76071921--76071988 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
76071911 CATTAGATAC
*
76071921 ATACATATAAAAATA-ATATAT
1 ATACATACAAAAATATATATAT
* *
76071942 ATACATAGCAAATAT-TA-ACAAT
1 ATACATA-CAAAAATATATA-TAT
*
76071964 ATACATACAAAGATATATATAT
1 ATACATACAAAAATATATATAT
76071986 ATA
1 ATA
76071989 TAACATGTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
21 14 0.38
22 22 0.59
23 1 0.03
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (22 bp):
ATACATACAAAAATATATATAT
Found at i:76072273 original size:28 final size:27
Alignment explanation
Indices: 76072210--76072275 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 27
76072200 TATAACACAA
*
76072210 ATAAAGACATAATATTTAATAATAATCT
1 ATAAA-ACATAATATTTAATAATAATAT
**
76072238 -T-AAA-ATAATATTTGCTATATAATAT
1 ATAAAACATAATATTTAATA-ATAATAT
76072263 ATAAAACATAATA
1 ATAAAACATAATA
76072276 ACAAAATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
24 11 0.35
25 7 0.23
26 3 0.10
27 4 0.13
28 6 0.19
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (27 bp):
ATAAAACATAATATTTAATAATAATAT
Found at i:76072399 original size:31 final size:32
Alignment explanation
Indices: 76072359--76072419 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
76072349 ATGTAAAAGA
76072359 ATTTATAAAATAACACATAATATAA-AAATATC
1 ATTTATAAAATAACACATAATA-AATAAATATC
*
76072391 ATTT-TAAAATAATACATAATAAATAAATA
1 ATTTATAAAATAACACATAATAAATAAATA
76072420 AATAATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 2 0.07
31 21 0.78
32 4 0.15
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (32 bp):
ATTTATAAAATAACACATAATAAATAAATATC
Found at i:76072433 original size:23 final size:23
Alignment explanation
Indices: 76072407--76072456 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
76072397 AAATAATACA
76072407 TAATAA-A-TAAATAAATAATAATT
1 TAATAAGAGTAAA-AAAT-ATAATT
*
76072430 TAATAAGAGTTAAAAATATAATT
1 TAATAAGAGTAAAAAATATAATT
76072453 TAAT
1 TAAT
76072457 TTACAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 16 0.67
24 5 0.21
25 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
TAATAAGAGTAAAAAATATAATT
Found at i:76072681 original size:19 final size:19
Alignment explanation
Indices: 76072626--76072682 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
76072616 AAAATAACGA
* *
76072626 AAATATAT-ATGTAAGAA-
1 AAATATATAATATAAAAAT
*
76072643 AAATATATAA-ATAATTAAT
1 AAATATATAATATAA-AAAT
76072662 AAATATATAATATAAAAAT
1 AAATATATAATATAAAAAT
76072681 AA
1 AA
76072683 TGATGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 11 0.33
18 3 0.09
19 15 0.45
20 4 0.12
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (19 bp):
AAATATATAATATAAAAAT
Found at i:76074958 original size:27 final size:27
Alignment explanation
Indices: 76074928--76074982 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
76074918 TTGACGGTGA
*
76074928 TAGACTCGTTTGTATAGTTCTTTTGTT
1 TAGACTCGTTCGTATAGTTCTTTTGTT
76074955 TAGACTCGTTCGTATAGTTCTTTTGTT
1 TAGACTCGTTCGTATAGTTCTTTTGTT
76074982 T
1 T
76074983 CCTAAACATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.13, G:0.18, T:0.55
Consensus pattern (27 bp):
TAGACTCGTTCGTATAGTTCTTTTGTT
Found at i:76077386 original size:26 final size:25
Alignment explanation
Indices: 76077327--76077386 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
76077317 AAGGTATAAA
*
76077327 AAACTTAAAATAAATAATACTAAAG
1 AAACTTAAAATAAATAATACAAAAG
* *
76077352 AAGCCTAAAATAAATAAATACAAAAG
1 AAACTTAAAATAAAT-AATACAAAAG
*
76077378 AAATTTAAA
1 AAACTTAAA
76077387 GGTCAATAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.65, C:0.08, G:0.05, T:0.22
Consensus pattern (25 bp):
AAACTTAAAATAAATAATACAAAAG
Found at i:76077751 original size:25 final size:26
Alignment explanation
Indices: 76077701--76077757 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
76077691 CCAAAATATG
* *
76077701 TAAAAACTTAGAATACATGATGATAA
1 TAAAAACTTAAAATACATAATGATAA
*
76077727 TAAAAATTTAAAATACATAAT-ATAA
1 TAAAAACTTAAAATACATAATGATAA
*
76077752 GAAAAA
1 TAAAAA
76077758 ACAAGCTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.26
Consensus pattern (26 bp):
TAAAAACTTAAAATACATAATGATAA
Found at i:76079558 original size:88 final size:88
Alignment explanation
Indices: 76079322--76079556 Score: 284
Period size: 88 Copynumber: 2.7 Consensus size: 88
76079312 ACGTGAGCTA
* * * *
76079322 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTG-AAA-CTTAATTTGAAAAGCAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTGAAAA--ATATT
*
76079385 TTTAAAATACCTCGACATGTGACCCG
64 TTGAAAATACCTCGACA-GTGACCCG
*
76079411 AGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGAAAAGCATAAATTGAAAAAATATTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTG-AAAAATATT-
*
76079474 ATTGAAAATACCTC-AGC-GTGCCCCG
64 -TTGAAAATACCTCGA-CAGTGACCCG
**
76079499 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTGAAAA
76079557 TACCTCAGCG
Statistics
Matches: 128, Mismatches: 10, Indels: 16
0.83 0.06 0.10
Matches are distributed among these distances:
87 6 0.05
88 45 0.35
89 42 0.33
90 35 0.27
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTGAAAAATATTTT
GAAAATACCTCGACAGTGACCCG
Found at i:76079597 original size:77 final size:75
Alignment explanation
Indices: 76079473--76079684 Score: 241
Period size: 77 Copynumber: 2.8 Consensus size: 75
76079463 AAAAAATATT
* * *
76079473 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGACCCAAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTT
76079538 GAAAAGCAGG
66 GAAAAGCAGG
*
76079548 AATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGC--GTGACCCAAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTT
* **
76079613 TTG--ATG-ATA
64 TTGAAAAGCAGG
* ** *** * * *
76079622 AATTAAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCACGATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGACCCAAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTT
76079685 GAAAAATAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
72 38 0.32
74 16 0.14
75 20 0.17
77 44 0.37
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (75 bp):
AATTGAAAATACCTCAGCGTGACCCAAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTT
GAAAAGCAGG
Found at i:76079675 original size:72 final size:75
Alignment explanation
Indices: 76079496--76081539 Score: 413
Period size: 73 Copynumber: 26.5 Consensus size: 75
76079486 TCAGCGTGCC
* *
76079496 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAATACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAGCAGAAATTAAAAATACC
*
76079561 TCAGCGTGTGAG
65 TCA-CATGTGAG
* * * *
76079573 CCAAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTTG-ATG-ATAAATTAAAAATACCT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTAAAAATACCT
76079636 CA-ATGTGA-
66 CACATGTGAG
* * * * *
76079644 CTTGAGGCTCAACTCACCTCTCACGATATGAGTTGA--TTTTTGAAA-AATAAATTAAAACACAA
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATT--AA-A-AA
* ** * * *
76079706 AAATTGACAATACCTCAG
61 TACCTCAC-AT--GTGAG
* * * * * * * * * * *
76079724 -CGTGCCCTGAGGCTCAACTCAC-C--TCTCGTAATATGAGTTGAATTTTGAAAAACAGAAATTG
1 CCGAG-GCTCA-ACTCACCTCTCGCAATAT-G-AGT-TGA-TT--TTTTTG-AAAGCAGAAATTA
* *
76079785 AAAATATCTCAGC--GTG-T
57 AAAATACCTCA-CATGTGAG
* *
76079802 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGACAAACA-ATAATTGAAA
1 CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGA-AAGCAGA-AATTAAAA
**
76079866 ATACCTCAGC--GTGCC
60 ATACCTCA-CATGTGAG
* * * *
76079881 CCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTTAACAAACA-ATAATTGAAAATAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGCAGA-AATTAAAAATAC
* **
76079945 CTCA-ACGTGCC
64 CTCACATGTGAG
* * * * * *
76079956 CCGAGGCTCAACTCACCTTTAGCAATATGAATTGA--TTTTTGAAAACATAAATTGAAAAACAGA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATT--AAAA-ATA
** * *
76080019 AATCGAAAATACCTCAGCATG
63 CCTC--ACAT--GT--G-A-G
* ** * *
76080040 TCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTCCAAA-CAGTAATTGAAAATAC
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTAAAAATAC
**
76080104 CTCAGC--GTGCC
64 CTCA-CATGTGAG
* ** * *
76080115 CCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTGACAAATA-ATAAATGAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA-AAGCAGA-AATTAAAAATA
*
76080179 CCTCAGC--GT-ACC
63 CCTCA-CATGTGA-G
* * **
76080191 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTAGAAAACAGACATAAAAACAGAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAG--A-AATTA-A-AAA
** * *
76080253 TTGAAAGTGACTCAACACGTCAG
61 -T---A--CC-TC-ACATGTGAG
* * * * *
76080276 CCAAGGCTCAACTCACCTTTCGCAATATGATTTGATTTTTTT--ATG-ATAAATTAAAAATACCT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTAAAAATACCT
76080338 CA-ATGTGA-
66 CACATGTGAG
* * * *
76080346 CTTGAGGCTCAACTCACCTCTCGCGATATGAGTTGA--TTTTTGAAA-AATAAATTAAAACACAA
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATT--AA-A-AA
* ** * * *
76080408 AAATTGACAATACCTCAG
61 TACCTCAC-AT--GTGAG
* * * * * * * * * *
76080426 -CGTGCCCCGAGGCTCAACTCAC-C--TCTCGCAATATGAGTTGATTTTTTTTACAAACA-ATAA
1 CCGAGGCTC-A-ACTCACCTCTCGCAATAT-G-AGT-TGA--T--TTTT-TTGA-AAGCAGA-AA
* **
76080486 TTGAAAATACCTCAGC--GTGCC
54 TTAAAAATACCTCA-CATGTGAG
* * * * *
76080507 CCGAGGCTCAACTCACCTCCCACAATATGAGTTGATTTTTTTAACAAACA-ATAATTGAAAATAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGCAGA-AATTAAAAATAC
* **
76080571 CTTAGC--GTGCC
64 CTCA-CATGTGAG
* * * * *
76080582 CCGAGGCTCAACTCACCTTTAGCAATATGAATTGA--TTTTTGAAAACATAAATTGAAAAATAGA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATT-AAAAAT--A
** * *
76080645 AATCGAAAATACCTCAGCATG
63 CCTC--ACAT--GT--G-A-G
* * ** * *
76080666 TCCTGAGGCTCAACTCACCTCTCGCAGTATAAGTTGATTTTTTCCAAA-CAGTAATTGAAAATAC
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTAAAAATAC
**
76080730 CTCAGC--GTGCC
64 CTCA-CATGTGAG
* *
76080741 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAAACA-ATAATTGAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA-AAGCAGA-AATTAAAAATA
*
76080805 CCTCAGC--GT-ACC
63 CCTCA-CATGTGA-G
* **** * *
76080817 CCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTAGAAAATAGACATAAA-AACAGAAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AG-CAGAAATTA-A-AAA-
** * *
76080880 TGAAAGTGACTCAACACGTAAG
61 T---A--CC-TC-ACATGTGAG
* * * *
76080902 CCAAGGCTCAACTCACCTTTCGCAATATGAGTTGATATTTTTT--ATG-ATAAATTAAAAATACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTTTGAAAGCAGAAATTAAAAATACC
76080964 TCA-ATGTGA-
65 TCACATGTGAG
* * * * *
76080973 CTTGAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGAAAATAAATTAAAACA-AAATTG
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----T---TGAAAGCAGAAATTA
* **
76081037 ACAATACCTCAGC--GTGCC
57 AAAATACCTCA-CATGTGAG
* * * *
76081055 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAAACAGAAATTGAAAATATC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAGCAGAAATTAAAAATACC
*
76081118 TCAGC--GTG-T
65 TCA-CATGTGAG
*
76081127 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACA-ATAATTAAAAATA
1 CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGCAGA-AATTAAAAATA
**
76081191 CCTCAGC--GTGCC
63 CCTCA-CATGTGAG
* *
76081203 CCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTTT-AACAACAGAAATTGAAAATACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AGCAGAAATTAAAAATACC
*
76081265 TCAGC--GTG-C
65 TCA-CATGTGAG
* * * * * *
76081274 CCGAGGCTCAACTCACCTTTAGCAATATGAATTGA--TTTTTGAAAACATAAATTGAAAAACAGA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATT--AAAA-ATA
** * *
76081337 AATCGAAAATACTCAGCATG
63 CCTC--ACAT-GT--G-A-G
* * * * *
76081357 TCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGTCAAA-CAGTAATTGAAAATAC
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTAAAAATAC
*
76081421 CTCAGC--GTG-C
64 CTCA-CATGTGAG
* * *
76081431 CTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-AAAATAATTGAAAATAC
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGA-AATTAAAAATAC
*
76081495 CTCAGC--GT--C
64 CTCA-CATGTGAG
*
76081504 CCGAGGCTCAACTCACCTCTCGCAATAATGATTTGA
1 CCGAGGCTCAACTCACCTCTCGCAAT-ATGAGTTGA
76081540 AAACAGACAT
Statistics
Matches: 1498, Mismatches: 266, Indels: 410
0.69 0.12 0.19
Matches are distributed among these distances:
69 5 0.00
70 7 0.00
71 91 0.06
72 169 0.11
73 205 0.14
74 98 0.07
75 201 0.13
76 128 0.09
77 59 0.04
78 84 0.06
79 31 0.02
80 47 0.03
81 63 0.04
82 21 0.01
83 19 0.01
84 17 0.01
85 117 0.08
86 79 0.05
87 32 0.02
88 20 0.01
89 5 0.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (75 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTAAAAATACCT
CACATGTGAG
Found at i:76079956 original size:75 final size:75
Alignment explanation
Indices: 76079702--76081539 Score: 1274
Period size: 75 Copynumber: 23.8 Consensus size: 75
76079692 AAATTAAAAC
* * * * *
76079702 ACAAAAATTGACAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-A
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
76079766 TTTTGAA-AA
66 TTTTTAACAA
* * *
76079775 ACAGA-AATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 ACA-ATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
76079839 TTTTTTTTTGACAA
64 --TTTTTTTAACAA
*
76079853 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
76079918 TTTTTAACAA
66 TTTTTAACAA
* * * *
76079928 ACAATAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTTTAGCAATATGAATTGA--
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
76079991 TTTTTGA-AA
66 TTTTTAACAA
* *** * * * * *
76080000 AC-ATAAATTGAAAA-ACAGAAATCGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTC
1 ACAAT-AATTGAAAATAC----CTC-AGCGTGCC-CCG-A-G-GCTCA---AC---TCACCTCTC
* *
76080063 GCAGTATGAGTTGA-TTTTTT-CCAA
50 GCAATATGAGTTGATTTTTTTAACAA
* *
76080087 ACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
76080152 TTTTTTGACAA
65 TTTTTTAACAA
* * *
76080163 ATAATAAATGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
****
76080228 TAGAAAACAGACATAAAA
66 T---TTTTA-AC----AA
* * * * * *
76080246 ACAGA-AATTGAAAGTGA-CTCAACACGT-CAGCCAAGGCTCAACTCACCTTTCGCAATATGATT
1 ACA-ATAATTGAAAAT-ACCTC-A-GCGTGC-CCCGAGGCTCAACTCACCTCTCGCAATATGAGT
**
76080308 TGATTTTTTT-A-TG
61 TGATTTTTTTAACAA
* * ** * ** *
76080321 A-TA-AATTAAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
76080384 TTTGAAAAATAAATTAA-AA
65 TTT------T---TTAACAA
* *
76080403 CACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 -ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
76080468 TTTTTTTACAA
65 TTTTTTAACAA
* *
76080479 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCACAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
76080544 TTTTTAACAA
66 TTTTTAACAA
* * * *
76080554 ACAATAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTTTAGCAATATGAATTGA--
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
76080617 TTTTTGA-AA
66 TTTTTAACAA
** *** * * * * *
76080626 AC-ATAAATTGAAAAATAGAAATCGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
1 ACAAT-AATTG-AAAAT--ACCTC-AGCGTGCC-CCG-A-G-GCTCA---AC---TCACCTCTCG
* * *
76080690 CAGTATAAGTTGA-TTTTTT-CCAA
51 CAATATGAGTTGATTTTTTTAACAA
*
76080713 ACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
76080778 TTTTTTGACAA
65 TTTTTTAACAA
* *
76080789 ACAATAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
***
76080854 TAGAAAATAGACATAAAA
66 T---TTTTA-AC----AA
* * *** * *
76080872 ACAGA-AATTGAAAGTGA-CTCAACACGTAAGCCAAGGCTCAACTCACCTTTCGCAATATGAGTT
1 ACA-ATAATTGAAAAT-ACCTC-A-GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
**
76080935 GATATTTTTT-A-TG
62 GAT-TTTTTTAACAA
* * ** * ** *
76080948 A-TA-AATTAAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCGATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
76081011 TTTGAAAATAAATTAAA
66 TTT-----TTAA--CAA
* *
76081028 ACAA-AATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-A
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
76081091 TTTTGAA-AA
66 TTTTTAACAA
* * *
76081100 ACAGA-AATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 ACA-ATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
76081164 TTTTTTGACAA
65 TTTTTTAACAA
*
76081175 ACAATAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-T
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
76081238 TTTTTAAC-A
66 TTTTTAACAA
* * *
76081247 ACAGA-AATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTTTAGCAATATGAATTGA-
1 ACA-ATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
76081309 -TTTTTGA-AA
65 TTTTTTAACAA
* *** * * * * *
76081318 AC-ATAAATTGAAAA-ACAGAAATCGAAAATACTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
1 ACAAT-AATTGAAAATAC----CTC-AGCGTGCCCCG-A-G-GCT----C-AA-CTCACCTCTCG
* *
76081381 CAGTATGAGTTGATTTTTGT--CAA
51 CAATATGAGTTGATTTTTTTAACAA
* *
76081404 ACAGTAATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
76081469 TTTTTGAA-AA
66 TTTTT-AACAA
*
76081479 A-AATAATTGAAAATACCTCAGCGT--CCCGAGGCTCAACTCACCTCTCGCAATAATGATTTGA
1 ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT-ATGAGTTGA
76081540 AAACAGACAT
Statistics
Matches: 1401, Mismatches: 226, Indels: 276
0.74 0.12 0.15
Matches are distributed among these distances:
69 1 0.00
70 2 0.00
71 76 0.05
72 134 0.10
73 231 0.16
74 63 0.04
75 270 0.19
76 141 0.10
77 12 0.01
78 65 0.05
79 16 0.01
80 14 0.01
81 57 0.04
82 9 0.01
83 47 0.03
84 18 0.01
85 145 0.10
86 57 0.04
87 39 0.03
88 4 0.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (75 bp):
ACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTAACAA
Found at i:76080535 original size:626 final size:625
Alignment explanation
Indices: 76079771--76081260 Score: 2589
Period size: 626 Copynumber: 2.4 Consensus size: 625
76079761 TTGAATTTTG
* * * * *
76079771 AAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
76079836 GATTTTTTTTTTGACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCC
66 GA--TTTTTTTT-ACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCC
*
76079901 CGCAATATGAGTTGATTTTTTTAACAAACAATAATTGAAAATACCTCAACGTGCCCCGAGGCTCA
128 CGCAATATGAGTTGATTTTTTTAACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCA
76079966 ACTCACCTTTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAAACAGAAATCGAAAATAC
193 ACTCACCTTTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAAACAGAAATCGAAAATAC
*
76080031 CTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTCCAAACAGTAATT
258 CTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATAAGTTGATTTTTTCCAAACAGTAATT
76080096 GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTGAC
323 GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTGAC
*
76080161 AAATAATAAATGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
388 AAACAATAAATGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
76080226 TTTAGAAAACAGACATAAAAACAGAAATTGAAAGTGACTCAACACGTCAGCCAAGGCTCAACTCA
453 TTTAGAAAACAGACATAAAAACAGAAATTGAAAGTGACTCAACACGTAAGCCAAGGCTCAACTCA
*
76080291 CCTTTCGCAATATGATTTGAT-TTTTTTATGATAAATTAAAAATACCTCAATGTGACTTGAGGCT
518 CCTTTCGCAATATGAGTTGATATTTTTTATGATAAATTAAAAATACCTCAATGTGACTTGAGGCT
76080355 CAACTCACCTCTCGCGATATGAGTTGATTTTTGAAAAATAAATT
583 CAACTCACCTCTCGCGATATGAGTTGATTTTTG-AAAATAAATT
76080399 AAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAA-ACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
76080464 TGATTTTTTTTACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCA
65 TGATTTTTTTTACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCG
*
76080529 CAATATGAGTTGATTTTTTTAACAAACAATAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAAC
130 CAATATGAGTTGATTTTTTTAACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAAC
*
76080594 TCACCTTTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAAATAGAAATCGAAAATACCT
195 TCACCTTTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAAACAGAAATCGAAAATACCT
76080659 CAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATAAGTTGATTTTTTCCAAACAGTAATTGA
260 CAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATAAGTTGATTTTTTCCAAACAGTAATTGA
*
76080724 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAA
325 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTGACAA
* *
76080789 ACAATAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATT
390 ACAATAAATGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
76080854 TAGAAAATAGACATAAAAACAGAAATTGAAAGTGACTCAACACGTAAGCCAAGGCTCAACTCACC
455 TAGAAAACAGACATAAAAACAGAAATTGAAAGTGACTCAACACGTAAGCCAAGGCTCAACTCACC
76080919 TTTCGCAATATGAGTTGATATTTTTTATGATAAATTAAAAATACCTCAATGTGACTTGAGGCTCA
520 TTTCGCAATATGAGTTGATATTTTTTATGATAAATTAAAAATACCTCAATGTGACTTGAGGCTCA
76080984 ACTCACCTCTCGCGATATGAGTTGATTTTTGAAAATAAATT
585 ACTCACCTCTCGCGATATGAGTTGATTTTTGAAAATAAATT
76081025 -AAAAC-AAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * * *
76081088 GA--ATTTTGAAAAACAGA-AATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GATTTTTTTTACAAACA-ATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCG
* *
76081150 CAATATGAGTTGATTTTTTTGACAAACAATAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAAC
130 CAATATGAGTTGATTTTTTTAACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAAC
* * * * *
76081215 TCA-CTCTCGCAATATGAGTTGATTTTTTAACAACAGAAATTGAAAA
195 TCACCTTTAGCAATATGAATTGATTTTTGAA-AACATAAATTGAAAA
76081261 TACCTCAGCG
Statistics
Matches: 825, Mismatches: 33, Indels: 15
0.95 0.04 0.02
Matches are distributed among these distances:
620 23 0.03
621 129 0.16
622 1 0.00
623 60 0.07
624 2 0.00
625 3 0.00
626 461 0.56
627 84 0.10
628 4 0.00
629 58 0.07
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (625 bp):
AAAAACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTTACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGC
AATATGAGTTGATTTTTTTAACAAACAATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACT
CACCTTTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAAACAGAAATCGAAAATACCTC
AGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATAAGTTGATTTTTTCCAAACAGTAATTGAA
AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTGACAAA
CAATAAATGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
AGAAAACAGACATAAAAACAGAAATTGAAAGTGACTCAACACGTAAGCCAAGGCTCAACTCACCT
TTCGCAATATGAGTTGATATTTTTTATGATAAATTAAAAATACCTCAATGTGACTTGAGGCTCAA
CTCACCTCTCGCGATATGAGTTGATTTTTGAAAATAAATT
Found at i:76080728 original size:86 final size:86
Alignment explanation
Indices: 76080563--76080726 Score: 206
Period size: 86 Copynumber: 1.9 Consensus size: 86
76080553 AACAATAATT
* * * *
76080563 GAAAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTTTAGCAATATGAATTGATTTTTGAAAAC
1 GAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTCAAAAC
76080628 ATAAATTGAAAAATAGAAATC
66 ATAAATTGAAAAATAGAAATC
* * * * *
76080649 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTAT-AAGTTGATTTTTTCCAA
1 GAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTAGCAATATGAA-TTGA-TTTTTCAAA
76080713 ACAGT-AATTGAAAA
64 ACA-TAAATTGAAAA
76080727 TACCTCAGCG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
85 2 0.03
86 44 0.67
87 19 0.29
88 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (86 bp):
GAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTCAAAAC
ATAAATTGAAAAATAGAAATC
Found at i:76081394 original size:85 final size:86
Alignment explanation
Indices: 76081246--76081417 Score: 233
Period size: 85 Copynumber: 2.0 Consensus size: 86
76081236 ATTTTTTAAC
* * *
76081246 AACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTTTAGCAATATGAATTGATT
1 AACAGAAATCGAAAATACCTCAGCATGCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATT
76081311 TTTG-AAAACA-TAAATTGAAA
66 TTTGTAAAACAGT-AATTGAAA
* * * *
76081331 AACAGAAATCGAAAATA-CTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGAT
1 AACAGAAATCGAAAATACCTCAGCATG-CCCGAGGCTCAACTCACCTCTAGCAATATGAATTGAT
*
76081395 TTTTGTCAAACAGTAATTGAAA
65 TTTTGTAAAACAGTAATTGAAA
76081417 A
1 A
76081418 TACCTCAGCG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 8 0.11
85 53 0.70
86 14 0.18
87 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (86 bp):
AACAGAAATCGAAAATACCTCAGCATGCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATT
TTTGTAAAACAGTAATTGAAA
Found at i:76082293 original size:48 final size:48
Alignment explanation
Indices: 76082222--76082319 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
76082212 ATAGTAAAAG
76082222 AGTGTCATAAAGAGGAAAGGGATTGCATTCAACGAATAAAAATGCTCT
1 AGTGTCATAAAGAGGAAAGGGATTGCATTCAACGAATAAAAATGCTCT
76082270 AGTGTCATAAAGAGGAAAGGGATTGCATTCAACGAATAAAAATGCTCT
1 AGTGTCATAAAGAGGAAAGGGATTGCATTCAACGAATAAAAATGCTCT
76082318 AG
1 AG
76082320 ATATTCAATG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.22
Consensus pattern (48 bp):
AGTGTCATAAAGAGGAAAGGGATTGCATTCAACGAATAAAAATGCTCT
Found at i:76090720 original size:26 final size:26
Alignment explanation
Indices: 76090676--76090725 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
76090666 TGACAATGCA
* *
76090676 GAGCTTCCCATTAAAAGCTTTTTGAT
1 GAGCTTCCCAATAAAAGCTCTTTGAT
* *
76090702 GAGCTTCCTAATAACAGCTCTTTG
1 GAGCTTCCCAATAAAAGCTCTTTG
76090726 GAGTTACCTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (26 bp):
GAGCTTCCCAATAAAAGCTCTTTGAT
Found at i:76092141 original size:43 final size:43
Alignment explanation
Indices: 76092091--76092174 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
76092081 CTGAAACACA
* * * *
76092091 AGCGTGTCTCTTGACCGTGTGAGCCACATGGTTTGACCACAAG
1 AGCGTGTCTCTTGACCATGTAAGCCACACGGTCTGACCACAAG
76092134 AGCGTGTCTCTTGACCATGTAAGCCACACGGTCTGACCACA
1 AGCGTGTCTCTTGACCATGTAAGCCACACGGTCTGACCACA
76092175 TGGGTGTGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (43 bp):
AGCGTGTCTCTTGACCATGTAAGCCACACGGTCTGACCACAAG
Found at i:76099277 original size:18 final size:18
Alignment explanation
Indices: 76099249--76099294 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
76099239 GGCTATGGCT
* *
76099249 ATGAGCATGACCGTGATC
1 ATGACCATGACCGTGACC
*
76099267 ATGGCCATGACCGTGACC
1 ATGACCATGACCGTGACC
76099285 ATGACCATGA
1 ATGACCATGA
76099295 TCATGGCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (18 bp):
ATGACCATGACCGTGACC
Found at i:76112637 original size:30 final size:30
Alignment explanation
Indices: 76112588--76112647 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76112578 TTCATCCATG
*
76112588 GAAAATAAAATAAAGAAAAGGATGA-AATTA
1 GAAAATAAAAAAAAGAAAA-GATGATAATTA
* *
76112618 GAAAGTAAAAAAAATAAAAGATGATAATTA
1 GAAAATAAAAAAAAGAAAAGATGATAATTA
76112648 ATTAAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (30 bp):
GAAAATAAAAAAAAGAAAAGATGATAATTA
Found at i:76121654 original size:30 final size:30
Alignment explanation
Indices: 76121603--76121663 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
76121593 GATTCATCCA
76121603 TGGAAAATAAAATAAAGAAAAGGATGA-AAT
1 TGGAAAATAAAATAAAGAAAA-GATGATAAT
* *
76121633 TGGAAAGTGAAAA-AAATAAAAGATGATAAT
1 TGGAAAAT-AAAATAAAGAAAAGATGATAAT
76121663 T
1 T
76121664 AATTAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.19
30 18 0.67
31 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (30 bp):
TGGAAAATAAAATAAAGAAAAGATGATAAT
Found at i:76122252 original size:65 final size:65
Alignment explanation
Indices: 76122165--76122310 Score: 220
Period size: 65 Copynumber: 2.2 Consensus size: 65
76122155 CTATCATAGT
* ** *
76122165 TCTTTGTGAGTGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTGTAGACACAAACGTAGC
1 TCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTACAGACACAAACGCAGC
* * * *
76122230 TCTTTGTAAGCGTCCTGTTATATGATTGGTTGTGATCCTGCATATATTACAGACGCAAACGCATC
1 TCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTACAGACACAAACGCAGC
76122295 TCTTTGTGAGCGTCCT
1 TCTTTGTGAGCGTCCT
76122311 AATATGGCTC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (65 bp):
TCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTACAGACACAAACGCAGC
Found at i:76122525 original size:26 final size:26
Alignment explanation
Indices: 76122472--76122528 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
76122462 CTTCCCGATA
*
76122472 GGCTCTTTATGCGCTTCCTGATTAAT
1 GGCTCTTTATGCGCTTCCTGAGTAAT
* *
76122498 GGCTCTTTATGTGTTTCCTG-GTACAT
1 GGCTCTTTATGCGCTTCCTGAGTA-AT
76122524 GGCTC
1 GGCTC
76122529 GAGAAAGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (26 bp):
GGCTCTTTATGCGCTTCCTGAGTAAT
Found at i:76125289 original size:15 final size:16
Alignment explanation
Indices: 76125270--76125319 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
76125260 TAATTTAAGA
76125270 AATAATAATTATTAATAT
1 AATAATAA-TA-TAATAT
76125288 AAT-ATAATATAATAT
1 AATAATAATATAATAT
*
76125303 AAT-ATAATATAACAT
1 AATAATAATATAATAT
76125318 AA
1 AA
76125320 CATAAATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
15 22 0.71
16 2 0.06
17 4 0.13
18 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AATAATAATATAATAT
Found at i:76125292 original size:5 final size:5
Alignment explanation
Indices: 76125282--76125335 Score: 74
Period size: 5 Copynumber: 11.0 Consensus size: 5
76125272 TAATAATTAT
* * *
76125282 TAATA TAATA TAATA TAATA TAATA TAATA TAACA TAACA TAA-A TTATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
76125331 TAATA
1 TAATA
76125336 GAAATAAAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
4 3 0.07
5 42 0.93
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:76129933 original size:20 final size:21
Alignment explanation
Indices: 76129908--76129952 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
76129898 GGTTTATTGT
76129908 TTTTTTATT-TCTTTTCTTCC
1 TTTTTTATTATCTTTTCTTCC
* *
76129928 TTTTTTATTATTTTTTCTTTC
1 TTTTTTATTATCTTTTCTTCC
76129949 TTTT
1 TTTT
76129953 CAAAACTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTATTATCTTTTCTTCC
Found at i:76129933 original size:21 final size:22
Alignment explanation
Indices: 76129907--76129952 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
76129897 AGGTTTATTG
76129907 TTTTTTTATT-TCTTTTCTTCC
1 TTTTTTTATTATCTTTTCTTCC
* *
76129928 -TTTTTTATTATTTTTTCTTTC
1 TTTTTTTATTATCTTTTCTTCC
76129949 TTTT
1 TTTT
76129953 CAAAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 9 0.43
21 9 0.43
22 3 0.14
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTTTATTATCTTTTCTTCC
Found at i:76130760 original size:3 final size:3
Alignment explanation
Indices: 76130745--76130997 Score: 110
Period size: 3 Copynumber: 83.0 Consensus size: 3
76130735 TTGTTATCAC
* *
76130745 TAT TAT T-T CTAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TGT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * ** * *
76130790 TAT TAT TAT GAC TCT T-T T-T TGT TAA TAT TGC TAT TAT AAT TA- TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
76130835 T-T TAT TTT TGT GT-T TATT TATT TAT TCAT T-T TAT TAT TAGT CCAT
1 TAT TAT TAT TAT -TAT TA-T TA-T TAT T-AT TAT TAT TAT TA-T -TAT
* * * * * * *
76130880 TAA T-T TAT TAT TAC TAA CA- TAT TCT TAT TAT TTT TAT TAACG TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-A-T TAT
* * *
76130925 TAT TAT TATT TGT TGCT CTACT TTT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TA-T TAT T-AT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
76130974 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
76130998 CAATATTTAC
Statistics
Matches: 190, Mismatches: 40, Indels: 40
0.70 0.15 0.15
Matches are distributed among these distances:
2 13 0.07
3 153 0.81
4 20 0.11
5 4 0.02
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:76130825 original size:34 final size:34
Alignment explanation
Indices: 76130781--76130845 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
76130771 TTATTATTGT
* *
76130781 TATTGTTATTATTATTATGACTCT-TTTTTGTTAA
1 TATTGCTATTATAATTAT-ACTCTATTTTTGTTAA
*
76130815 TATTGCTATTATAATTATACTTTATTTTTGT
1 TATTGCTATTATAATTATACTCTATTTTTGT
76130846 GTTTATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.62
Consensus pattern (34 bp):
TATTGCTATTATAATTATACTCTATTTTTGTTAA
Found at i:76130920 original size:23 final size:23
Alignment explanation
Indices: 76130884--76130935 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
76130874 GTCCATTAAT
* *
76130884 TTATTATTACTAACATATTCTTA
1 TTATTTTTACTAACATATTATTA
* *
76130907 TTATTTTTATTAACGTATTATTA
1 TTATTTTTACTAACATATTATTA
76130930 TTATTT
1 TTATTT
76130936 GTTGCTCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.60
Consensus pattern (23 bp):
TTATTTTTACTAACATATTATTA
Found at i:76131269 original size:3 final size:3
Alignment explanation
Indices: 76131217--76131257 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
76131207 TTATTGCTAC
*
76131217 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAAT TTT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT T
76131258 TGACATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:76137330 original size:51 final size:52
Alignment explanation
Indices: 76137271--76137368 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 52
76137261 CATTTTCAGC
* **
76137271 AGAAAACCATATTCATTTTTAAATGA-TTCT-ATTTCTCCATTTTCATTTTAA
1 AGAAAACCATAATCATTTCCAAAT-ATTTCTCATTTCTCCATTTTCATTTTAA
*
76137322 AGAAAACCATAATCATTTCCAAATATTTCTCTTTTCTCCATTTTCAT
1 AGAAAACCATAATCATTTCCAAATATTTCTCATTTCTCCATTTTCAT
76137369 CATTTCTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
50 1 0.02
51 25 0.61
52 15 0.37
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (52 bp):
AGAAAACCATAATCATTTCCAAATATTTCTCATTTCTCCATTTTCATTTTAA
Found at i:76138824 original size:20 final size:20
Alignment explanation
Indices: 76138799--76138890 Score: 62
Period size: 20 Copynumber: 4.3 Consensus size: 20
76138789 AAAAAGTTAT
76138799 AAAAAATATTAAAAATTGTAAAA
1 AAAAAATATTAAAAATTGT---A
76138822 AAATTGAAAGTATTAAAAATTGTA
1 AAA---AAA-TATTAAAAATTGTA
* * * *
76138846 AATAATTATTAAATATTGTC
1 AAAAAATATTAAAAATTGTA
*
76138866 AAAAAA-ATT-AAATTTGTA
1 AAAAAATATTAAAAATTGTA
76138884 AAAAAAT
1 AAAAAAT
76138891 TACTTAAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 14
0.71 0.12 0.18
Matches are distributed among these distances:
18 12 0.22
19 3 0.05
20 16 0.29
21 2 0.04
23 3 0.05
24 3 0.05
26 3 0.05
27 13 0.24
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.33
Consensus pattern (20 bp):
AAAAAATATTAAAAATTGTA
Found at i:76138877 original size:39 final size:39
Alignment explanation
Indices: 76138833--76138936 Score: 99
Period size: 39 Copynumber: 2.7 Consensus size: 39
76138823 AATTGAAAGT
76138833 ATTAAAAATTGTAAATAATTATTAAATATTGTCAAAAA-A
1 ATTAAAAATTGTAAATAATTATTAAAT-TTGTCAAAAATA
* * * *
76138872 ATT-AAATTTGTAAAAAAATTACTTAAATTTGTTAAAAATT
1 ATTAAAAATTGT-AAATAATTA-TTAAATTTGTCAAAAATA
*
76138912 AGTAACAAA--GTAAATAATTATTAAA
1 ATTAA-AAATTGTAAATAATTATTAAA
76138937 ATTTTGTGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
38 12 0.23
39 28 0.53
40 10 0.19
41 1 0.02
42 2 0.04
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.37
Consensus pattern (39 bp):
ATTAAAAATTGTAAATAATTATTAAATTTGTCAAAAATA
Found at i:76138886 original size:47 final size:47
Alignment explanation
Indices: 76138775--76138887 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 47
76138765 CATTGACCAC
76138775 ATTGAAAATTTGTAAAAAAGTTATAAAAAATATTAAAAATTGTAAAAAA
1 ATTG-AAATTTGT-AAAAAGTTATAAAAAATATTAAAAATTGTAAAAAA
* * * *
76138824 ATTGAAAGTAT-TAAAAA-TTGTAAATAATTATTAAATATTGTCAAAAAA
1 ATTGAAA-TTTGTAAAAAGTTATAAA-AAATATTAAAAATTGT-AAAAAA
76138872 ATT-AAATTTGTAAAAA
1 ATTGAAATTTGTAAAAA
76138888 AATTACTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
46 8 0.15
47 28 0.51
48 13 0.24
49 6 0.11
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.34
Consensus pattern (47 bp):
ATTGAAATTTGTAAAAAGTTATAAAAAATATTAAAAATTGTAAAAAA
Found at i:76138888 original size:17 final size:19
Alignment explanation
Indices: 76138853--76138892 Score: 66
Period size: 17 Copynumber: 2.2 Consensus size: 19
76138843 GTAAATAATT
76138853 ATTAAATATTGTCAAAAAA
1 ATTAAATATTGTCAAAAAA
76138872 ATTAAAT-TTGT-AAAAAA
1 ATTAAATATTGTCAAAAAA
76138889 ATTA
1 ATTA
76138893 CTTAAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.48
18 4 0.19
19 7 0.33
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (19 bp):
ATTAAATATTGTCAAAAAA
Done.