Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 225 of 311
Found at i:76521285 original size:43 final size:43
Alignment explanation
Indices: 76521232--76521429 Score: 351
Period size: 43 Copynumber: 4.6 Consensus size: 43
76521222 CCGGCATTAC
* *
76521232 GCCTGGTAGGCACGAAGGCCCGAATGCACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
76521275 GCCTGCTAGGCCCGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
76521318 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
76521361 TCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
76521404 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
76521430 TAATACTAGC
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 147 1.00
ACGTcount: A:0.29, C:0.34, G:0.26, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:76521506 original size:38 final size:38
Alignment explanation
Indices: 76521427--76521529 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
76521417 GAAGGCCCGA
* * * * **
76521427 ATATAATACTAGCACTAGGCCTGCGGGATTTATCCTTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
76521465 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
**
76521503 ATATTTTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
76521530 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:76522878 original size:23 final size:23
Alignment explanation
Indices: 76522852--76522918 Score: 125
Period size: 23 Copynumber: 2.9 Consensus size: 23
76522842 ACGGATTTCC
76522852 ACCCAAACACACCAGAATATCCA
1 ACCCAAACACACCAGAATATCCA
76522875 ACCCAAACACACCAGAATATCCA
1 ACCCAAACACACCAGAATATCCA
76522898 ACCCAAACACACCCAGAATAT
1 ACCCAAACACA-CCAGAATAT
76522919 TGTAAATCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 34 0.79
24 9 0.21
ACGTcount: A:0.48, C:0.39, G:0.04, T:0.09
Consensus pattern (23 bp):
ACCCAAACACACCAGAATATCCA
Found at i:76524375 original size:21 final size:23
Alignment explanation
Indices: 76524351--76524394 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
76524341 AAACCCTATT
*
76524351 TCCCCT-TTTCTT-TCTTTTTTC
1 TCCCCTGTTTCTTCTCTGTTTTC
76524372 TCCCCTGTTTCTTCTCTGTTTTC
1 TCCCCTGTTTCTTCTCTGTTTTC
76524395 GTTTTCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 6 0.30
23 8 0.40
ACGTcount: A:0.00, C:0.34, G:0.05, T:0.61
Consensus pattern (23 bp):
TCCCCTGTTTCTTCTCTGTTTTC
Found at i:76524453 original size:5 final size:5
Alignment explanation
Indices: 76524443--76524490 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
76524433 TATATATATA
76524443 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
76524491 CTTAATTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:76528106 original size:48 final size:48
Alignment explanation
Indices: 76528046--76528148 Score: 118
Period size: 48 Copynumber: 2.1 Consensus size: 48
76528036 GTCCAACTAT
* * * * * *
76528046 GGTCTTATACTAGCTCTGCTCT-GCCCGTGCTGATGCCTATTCCTGATA
1 GGTCTTACACTAGCACT-CACTGGCCCGTGCCGATGCCTATCCCAGATA
* *
76528094 GGTCTTACACTAGCACTCACTGGGCTGTGCCGATGCCTATCCCAGATA
1 GGTCTTACACTAGCACTCACTGGCCCGTGCCGATGCCTATCCCAGATA
76528142 GGTCTTA
1 GGTCTTA
76528149 AGCTTAGCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
47 3 0.07
48 43 0.93
ACGTcount: A:0.17, C:0.29, G:0.22, T:0.31
Consensus pattern (48 bp):
GGTCTTACACTAGCACTCACTGGCCCGTGCCGATGCCTATCCCAGATA
Found at i:76529834 original size:43 final size:43
Alignment explanation
Indices: 76529781--76529892 Score: 215
Period size: 43 Copynumber: 2.6 Consensus size: 43
76529771 CCGGTATTAC
*
76529781 GCCTGTTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
76529824 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
76529867 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
76529893 TAATACCAGC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.29, C:0.33, G:0.27, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:76529933 original size:38 final size:38
Alignment explanation
Indices: 76529890--76529989 Score: 146
Period size: 38 Copynumber: 2.6 Consensus size: 38
76529880 GAAGGCCCGA
* * * *
76529890 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
76529928 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
**
76529966 ATATTTTACCAGCACGAAGCCTGC
1 ATATAATACCAGCACGAAGCCTGC
76529990 TGGTCTTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:76535327 original size:33 final size:33
Alignment explanation
Indices: 76535285--76535350 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
76535275 ATGGATATTG
76535285 AGTTAAATTACAAAATCATTTTGATTTTTTATC
1 AGTTAAATTACAAAATCATTTTGATTTTTTATC
*
76535318 AGTTAAATTACATAATCATTTTGATTTTTTATC
1 AGTTAAATTACAAAATCATTTTGATTTTTTATC
76535351 TCATTTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (33 bp):
AGTTAAATTACAAAATCATTTTGATTTTTTATC
Found at i:76537254 original size:18 final size:18
Alignment explanation
Indices: 76537227--76537274 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
76537217 GTTGAATTAG
*
76537227 ATTTTATATTTTTTAA-A
1 ATTTTTTATTTTTTAATA
76537244 TATTTTTTA-TTTTTAATA
1 -ATTTTTTATTTTTTAATA
76537262 ATTTATTTATTTT
1 ATTT-TTTATTTT
76537275 GAACAAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 11 0.42
18 12 0.46
19 3 0.12
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTTATTTTTTAATA
Found at i:76537258 original size:17 final size:18
Alignment explanation
Indices: 76537236--76537274 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
76537226 GATTTTATAT
76537236 TTTTTAA-ATATTT-TTTA
1 TTTTTAATA-ATTTATTTA
76537253 TTTTTAATAATTTATTTA
1 TTTTTAATAATTTATTTA
76537271 TTTT
1 TTTT
76537275 GAACAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTAATAATTTATTTA
Found at i:76538410 original size:31 final size:32
Alignment explanation
Indices: 76538368--76538438 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 32
76538358 TATAATTTAA
* * *
76538368 TAATA-AATAATAAATAATTTTATCATATT-T
1 TAATATAATAATAAATAATTTAATAAAATTCT
*
76538398 TAATATAATAATATATAATTTAATAAAATTCT
1 TAATATAATAATAAATAATTTAATAAAATTCT
76538430 TAATATAAT
1 TAATATAAT
76538439 TATTATTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 5 0.14
31 20 0.57
32 10 0.29
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (32 bp):
TAATATAATAATAAATAATTTAATAAAATTCT
Found at i:76550254 original size:38 final size:35
Alignment explanation
Indices: 76550172--76550300 Score: 143
Period size: 35 Copynumber: 3.6 Consensus size: 35
76550162 CCTCATTAAA
* * *
76550172 ATACCATACCTACATTTCACAACTCGGTATGAGA-A
1 ATACCATACCTACGTTTCACAACTCAGTATG-GATG
* ** *
76550207 ATGCCATACCTACGTTTCTTAATTCAGTATGGATTTG
1 ATACCATACCTACGTTTCACAACTCAGTATGGA--TG
*
76550244 ATAACGATACCTACGTTTCACAACTCAGTATGGATG
1 AT-ACCATACCTACGTTTCACAACTCAGTATGGATG
76550280 ATACCATACCTACGTTTCACA
1 ATACCATACCTACGTTTCACA
76550301 CTTTGCTATG
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
34 2 0.03
35 43 0.56
36 4 0.05
37 2 0.03
38 26 0.34
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACGTTTCACAACTCAGTATGGATG
Found at i:76553731 original size:42 final size:42
Alignment explanation
Indices: 76553685--76553772 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
76553675 AATAATTTAT
76553685 TTTACTTTGTGGTTGATTTGACATGTATTTGTATTTTTATAC
1 TTTACTTTGTGGTTGATTTGACATGTATTTGTATTTTTATAC
*
76553727 TTTACTTTGTGGTTGTTTTGACATGTATTTGTATTTTTATAC
1 TTTACTTTGTGGTTGATTTGACATGTATTTGTATTTTTATAC
76553769 TTTA
1 TTTA
76553773 ATTTTATCGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.18, C:0.07, G:0.16, T:0.59
Consensus pattern (42 bp):
TTTACTTTGTGGTTGATTTGACATGTATTTGTATTTTTATAC
Found at i:76566237 original size:36 final size:37
Alignment explanation
Indices: 76566197--76566277 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
76566187 GTGATATGAT
* ** *
76566197 GAGTACATCTGTGTTGAAAT-CCTCCAAATGATTAAA
1 GAGTACATCTATAATGAAATACCTCAAAATGATTAAA
*
76566233 GAGTACATCTATAATGAAATACCTTAAAATGATTAAA
1 GAGTACATCTATAATGAAATACCTCAAAATGATTAAA
76566270 GAGTACAT
1 GAGTACAT
76566278 ATATGCTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 17 0.44
37 22 0.56
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.30
Consensus pattern (37 bp):
GAGTACATCTATAATGAAATACCTCAAAATGATTAAA
Found at i:76573825 original size:29 final size:30
Alignment explanation
Indices: 76573778--76573841 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
76573768 CTTATTTAAT
76573778 TCTT-TTTAATAATACAGGAACTAATTTGA
1 TCTTATTTAATAATACAGGAACTAATTTGA
* *
76573807 T-TTATTTAATAGTAGAGGAACTAATTTGA
1 TCTTATTTAATAATACAGGAACTAATTTGA
76573836 TCTTAT
1 TCTTAT
76573842 ATAAACAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 2 0.06
29 25 0.81
30 4 0.13
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (30 bp):
TCTTATTTAATAATACAGGAACTAATTTGA
Found at i:76574561 original size:425 final size:425
Alignment explanation
Indices: 76573768--76574619 Score: 1650
Period size: 425 Copynumber: 2.0 Consensus size: 425
76573758 GAAATTTGGT
*
76573768 CTTATTTAATTCTTTTTAATAATACAGGAACTAATTTGATTTATTTAATAGTAGAGGAACTAATT
1 CTTATTTAATTCTTTTTAATAATACAGGAACTAATTTGATTCATTTAATAGTAGAGGAACTAATT
76573833 TGATCTTATATAAACAGAACAGCCAGGTACATTCACCCTTTATAATTGCTATATCCAATGGTTTT
66 TGATCTTATATAAACAGAACAGCCAGGTACATTCACCCTTTATAATTGCTATATCCAATGGTTTT
*
76573898 GAATTGCTTCAACAAGTTTGCTCAAAATACTCACCAAAAATATAACTAGGTGCTTATGTTCCCGT
131 GAATTGCTTCAACAAGTTTGCTCAAAATACTAACCAAAAATATAACTAGGTGCTTATGTTCCCGT
76573963 CCTTGGAAACAAATCATCCTAACAAGAGCTCAATCTTACTTAAACATTGTGCTAAGAAAATACTG
196 CCTTGGAAACAAATCATCCTAACAAGAGCTCAATCTTACTTAAACATTGTGCTAAGAAAATACTG
76574028 AAAAACAGACAGACACATACCTGGATTAACACCTCAACAATCCAGGACACCAGGGAACATATATA
261 AAAAACAGACAGACACATACCTGGATTAACACCTCAACAATCCAGGACACCAGGGAACATATATA
*
76574093 GCCAATGAAATCTGCATTATCTGTAGTAATATACAATGTCACTTTGATCTATTTCTTATTTTCCT
326 GCCAATGAAATCTGCATTATCTGTAGTAATATACAACGTCACTTTGATCTATTTCTTATTTTCCT
76574158 AATCAAGTAATTCTCCAATCCAATGCCTGCCTCTA
391 AATCAAGTAATTCTCCAATCCAATGCCTGCCTCTA
*
76574193 CTTATTTAATTCTTTTTAATAATACTGGAACTAATTTGATTCATTTAATAGTAGAGGAACTAATT
1 CTTATTTAATTCTTTTTAATAATACAGGAACTAATTTGATTCATTTAATAGTAGAGGAACTAATT
*
76574258 TGATCTTATATAAACAGAACTGCCAGGTACATTCACCCTTTATAATTGCTATATCCAATGGTTTT
66 TGATCTTATATAAACAGAACAGCCAGGTACATTCACCCTTTATAATTGCTATATCCAATGGTTTT
76574323 GAATTGCTTCAACAAGTTTGCTCAAAATACTAACCAAAAATATAACTAGGTGCTTATGTTCCCGT
131 GAATTGCTTCAACAAGTTTGCTCAAAATACTAACCAAAAATATAACTAGGTGCTTATGTTCCCGT
*
76574388 CCTTGGAAACAAATCATCCTAACAAGAGCTCAATCTTACTTACACATTGTGCTAAGAAAATACTG
196 CCTTGGAAACAAATCATCCTAACAAGAGCTCAATCTTACTTAAACATTGTGCTAAGAAAATACTG
76574453 AAAAACAGACAGACACATACCTGGATTAACACCTCAACAATCCAGGACACCAGGGAACATATATA
261 AAAAACAGACAGACACATACCTGGATTAACACCTCAACAATCCAGGACACCAGGGAACATATATA
76574518 GCCAATGAAATCTGCATTATCTGTAGTAATATACAACGTCACTTTGATCTATTTCTTATTTTCCT
326 GCCAATGAAATCTGCATTATCTGTAGTAATATACAACGTCACTTTGATCTATTTCTTATTTTCCT
76574583 AATCAAGTAATTCTCCAATCCAATGCCTGCCTCTA
391 AATCAAGTAATTCTCCAATCCAATGCCTGCCTCTA
76574618 CT
1 CT
76574620 ATTCTTGTGT
Statistics
Matches: 421, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
425 421 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (425 bp):
CTTATTTAATTCTTTTTAATAATACAGGAACTAATTTGATTCATTTAATAGTAGAGGAACTAATT
TGATCTTATATAAACAGAACAGCCAGGTACATTCACCCTTTATAATTGCTATATCCAATGGTTTT
GAATTGCTTCAACAAGTTTGCTCAAAATACTAACCAAAAATATAACTAGGTGCTTATGTTCCCGT
CCTTGGAAACAAATCATCCTAACAAGAGCTCAATCTTACTTAAACATTGTGCTAAGAAAATACTG
AAAAACAGACAGACACATACCTGGATTAACACCTCAACAATCCAGGACACCAGGGAACATATATA
GCCAATGAAATCTGCATTATCTGTAGTAATATACAACGTCACTTTGATCTATTTCTTATTTTCCT
AATCAAGTAATTCTCCAATCCAATGCCTGCCTCTA
Found at i:76576138 original size:26 final size:28
Alignment explanation
Indices: 76576102--76576166 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 28
76576092 CGGCCCGGCC
* * *
76576102 TATTTTTAAAAT-AAACATTAAAAAA-T
1 TATTTTAAAAATAAAAAATAAAAAAATT
76576128 TATTTTAAAAATAAAAAAATAAAAAAATT
1 TATTTTAAAAAT-AAAAAATAAAAAAATT
76576157 TATTTTAAAA
1 TATTTTAAAA
76576167 GTATTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.33
28 11 0.33
29 11 0.33
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (28 bp):
TATTTTAAAAATAAAAAATAAAAAAATT
Found at i:76576166 original size:28 final size:25
Alignment explanation
Indices: 76576105--76576166 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 25
76576095 CCCGGCCTAT
* *
76576105 TTTTAAAATAAACATTAAAAAATTA
1 TTTTAAAATAAAAATAAAAAAATTA
76576130 TTTTAAAAATAAAAAAATAAAAAAATTTA
1 TTTT-AAAAT--AAAAATAAAAAAA-TTA
76576159 TTTTAAAA
1 TTTTAAAA
76576167 GTATTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 4 0.13
26 5 0.16
28 15 0.48
29 7 0.23
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
TTTTAAAATAAAAATAAAAAAATTA
Found at i:76576246 original size:6 final size:5
Alignment explanation
Indices: 76576218--76576247 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
76576208 ATTATATTCA
76576218 GGCCG GGCCG GGCCG GGCCG GGCCCG GGCC
1 GGCCG GGCCG GGCCG GGCCG GG-CCG GGCC
76576248 AAAAAATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.00, C:0.43, G:0.57, T:0.00
Consensus pattern (5 bp):
GGCCG
Found at i:76580488 original size:15 final size:15
Alignment explanation
Indices: 76580470--76580511 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
76580460 ATAATAATAC
76580470 TAATAATAATGAGAA
1 TAATAATAATGAGAA
*
76580485 TAAT-ATGAATGATAA
1 TAATAAT-AATGAGAA
*
76580500 TAAAAATAATGA
1 TAATAATAATGA
76580512 ATAATTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.29
Consensus pattern (15 bp):
TAATAATAATGAGAA
Found at i:76584586 original size:44 final size:44
Alignment explanation
Indices: 76584506--76584658 Score: 155
Period size: 44 Copynumber: 3.5 Consensus size: 44
76584496 TCATTCTAAC
* * * * *
76584506 CCACTGTATCTTCAGGG-GTATAGGAATTATCGCTTCGATCCACT
1 CCACTGCAACTTCAGGGAG-ATAAGACTTATAGCTTCGATCCACT
* * *
76584550 CCACTGCAACTTTAGGGAGATAAGACTTGTAGCTTCGATCCATT
1 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCGATCCACT
* * ***
76584594 CCACTGTAACTTCAGGGAGATAAGACTTATAGCTTCAATTTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCGATCCACT
* *
76584638 CCGCTGCAACTTCAAGGAGAT
1 CCACTGCAACTTCAGGGAGAT
76584659 GAGGTTTGTG
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 88 0.99
45 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCGATCCACT
Found at i:76584942 original size:94 final size:93
Alignment explanation
Indices: 76584769--76584943 Score: 217
Period size: 94 Copynumber: 1.9 Consensus size: 93
76584759 TTTTAACCTG
* * * * *
76584769 CTCCACTGCAATTTTAGGGAGATAAGGTTTGCGGCTTTAATTTGCTCCACTGCAACTTCAAGGAG
1 CTCCACTGCAATTTCAAGGAGATAAGATTTGCGGCTTTAATTTGCTCCACTACAACTTCAAAGAG
*
76584834 ATAAGATTTGTAGCTTATCTTCAATCTA
66 ATAAGATTTATAGCTTATCTTCAATCTA
**** *
76584862 CTCCACTGCAATTTCAAGGAGATAAGATTTGTTTTTTTTAACTTT-CTCTACTACAACTTCAAAG
1 CTCCACTGCAATTTCAAGGAGATAAGATTTG-CGGCTTTAA-TTTGCTCCACTACAACTTCAAAG
*
76584926 AGATAAGGTTTATAGCTT
64 AGATAAGATTTATAGCTT
76584944 TAATCTACTT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
93 28 0.41
94 37 0.54
95 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (93 bp):
CTCCACTGCAATTTCAAGGAGATAAGATTTGCGGCTTTAATTTGCTCCACTACAACTTCAAAGAG
ATAAGATTTATAGCTTATCTTCAATCTA
Found at i:76584963 original size:44 final size:44
Alignment explanation
Indices: 76584712--76585426 Score: 251
Period size: 44 Copynumber: 16.0 Consensus size: 44
76584702 TAAAGTGTGA
* * * * * * *
76584712 AGCTTTAATCTGCTCTGCTGCAACTTGAAAAAAATAAGATTTGTT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTT-AT
** * * * * * * * **
76584757 ATTTTTAACCTGCTCCACTGCAATTTTAGGGAGATAAGGTTTGC
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTAT
* * * * *
76584801 GGCTTTAATTTGCTCCACTGCAACTTCA-AGGAGATAAGATTTGT
1 AGCTTTAATCTACTCTACTGCAACTTCAGA-GAGATAAGATTTAT
* * *
76584845 AGCTTATCTTCAATCTACTCCACTGCAATTTCA-AGGAGATAAGATTTGTT
1 AGC---T-TT-AATCTACTCTACTGCAACTTCAGA-GAGATAAGATTT-AT
*** * * * *
76584895 TTTTTTAA-CTTTCTCTACTACAACTTCAAAGAGATAAGGTTTAT
1 AGCTTTAATC-TACTCTACTGCAACTTCAGAGAGATAAGATTTAT
* * *
76584939 AGCTTTAATCTACTTTATTGCAACTTCAGAGAGATAAGATTTGCT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTT-AT
* * * * *
76584984 ATCTCTT-ATCTACTCTACTGCAACTTTAGGGATATAAGATTTGTTT
1 AGCT-TTAATCTACTCTACTGCAACTTCAGAGAGATAAGA-TT-TAT
** * * *
76585030 ATTTTTAACCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTAT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAG-AGATAAGATTTAT
* * * *
76585074 AGCTTTAATCTGCTCTATTACAACTTCAGAGAGATAAGATTTGCT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTT-AT
* * * * * * *
76585119 ATCTCTGATCTACTCCACT-AAAGCTTCAGGGAGATAAGATCTAT
1 AGCTTTAATCTACTCTACTGCAA-CTTCAGAGAGATAAGATTTAT
* * * * * * * * * * *
76585163 AACTTCAACCTGCCCCACTACAACTTCAGGGAGACAATATTTGT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTAT
* * * ** * * * * *
76585207 AACCTTCAGTCTGTTCCACTACAACTTTA-AGGAGATAAGACTTGT
1 -AGCTTTAATCTACTCTACTGCAACTTCAGA-GAGATAAGATTTAT
* * * ** * * * * * *
76585252 AACTTCAACCTGTTCCACTGTAAATTTA-AGAAGATACGGTTTAT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAG-AGATAAGATTTAT
* * *
76585296 AGCTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGCT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTT-AT
* * * *
76585341 ATCTTCAATCTACTCTACTGCAACTTCAGAAAGATAAGATCTAT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTAT
* * * * * *
76585385 AACTTCAATCTGCTCCACGGCAACTTTAG-GTAGATAAGATTT
1 AGCTTTAATCTACTCTACTGCAACTTCAGAG-AGATAAGATTT
76585427 GTAATTTGTA
Statistics
Matches: 506, Mismatches: 138, Indels: 53
0.73 0.20 0.08
Matches are distributed among these distances:
43 1 0.00
44 230 0.45
45 201 0.40
46 35 0.07
47 3 0.01
48 2 0.00
49 33 0.07
50 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (44 bp):
AGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTAT
Found at i:76585150 original size:135 final size:135
Alignment explanation
Indices: 76584745--76585158 Score: 480
Period size: 135 Copynumber: 3.1 Consensus size: 135
76584735 CTTGAAAAAA
* * * * ***
76584745 ATAAGATTTG-TTATTTTTAACCTGCTCCACTGCAATTTTAGGGAGATAAGGTTTGCGGCTTTAA
1 ATAAGATTTGTTTATTTTTAACCTGCTCCACTGCAACTTCAAGAAGATAAGGTTTATAGCTTTAA
* * *
76584809 TTTGCTCCACTGCAACTTCA-AGGAGATAAGATTTGTAGCTTATCT-TCAATCTACTCCACTGCA
66 TCTGCTCTATTGCAACTTCAGA-GAGATAAGA-TT-T-GC-TATCTCT-AATCTACTCCACTGCA
* *
76584872 ATTTCAAGGAG
125 ACTTCAGGGAG
* * * *
76584883 ATAAGATTTGTTT-TTTTTAACTTTCTCTACTACAACTTCAA-AGAGATAAGGTTTATAGCTTTA
1 ATAAGATTTGTTTATTTTTAACCTGCTCCACTGCAACTTCAAGA-AGATAAGGTTTATAGCTTTA
* * * * *
76584946 ATCTACTTTATTGCAACTTCAGAGAGATAAGATTTGCTATCTCTTATCTACTCTACTGCAACTTT
65 ATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGCTATCTCTAATCTACTCCACTGCAACTTC
*
76585011 AGGGAT
130 AGGGAG
*
76585017 ATAAGATTTGTTTATTTTTAACCTGCTCCACTGCAACTTCAAGAAGATAAGATTTATAGCTTTAA
1 ATAAGATTTGTTTATTTTTAACCTGCTCCACTGCAACTTCAAGAAGATAAGGTTTATAGCTTTAA
* * *
76585082 TCTGCTCTATTACAACTTCAGAGAGATAAGATTTGCTATCTCTGATCTACTCCACT-AAAGCTTC
66 TCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGCTATCTCTAATCTACTCCACTGCAA-CTTC
76585146 AGGGAG
130 AGGGAG
76585152 ATAAGAT
1 ATAAGAT
76585159 CTATAACTTC
Statistics
Matches: 234, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
134 41 0.18
135 113 0.48
136 2 0.01
137 2 0.01
138 73 0.31
139 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (135 bp):
ATAAGATTTGTTTATTTTTAACCTGCTCCACTGCAACTTCAAGAAGATAAGGTTTATAGCTTTAA
TCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGCTATCTCTAATCTACTCCACTGCAACTTCA
GGGAG
Found at i:76585399 original size:89 final size:89
Alignment explanation
Indices: 76584852--76585427 Score: 289
Period size: 89 Copynumber: 6.5 Consensus size: 89
76584842 TGTAGCTTAT
* * * * * * *
76584852 CTTCAATCTACTCCACTGCAATTTCA-AGGAGATAAGATTTGTTTTTTTTAA-CTTTCTCTACTA
1 CTTCAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGATATCTTCAATC-TGCTCTACTA
* *
76584915 CAACTTCA-AAGAGATAAGGTTTATAG
64 CAACTTCAGAA-AGATAAGATTTATAA
* * ** * * * * *
76584941 CTTTAATCTACTTTATTGCAACTTCAGAGAGATAAGATTTGCTATC-TCTTATCTACTCTACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGATATCTTC-AATCTGCTCTACTAC
* ** * * *
76585005 AACTTTAGGGATATAAGATTTGTTTAT
65 AACTTCAGAAAGATAAGA-TT-TATAA
* * * * * *
76585032 TTTTAACCTGCTCCACTGCAACTTCA-AGAAGATAAGATTT-ATAGCTTTAATCTGCTCTATTAC
1 CTTCAATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGATATCTTCAATCTGCTCTACTAC
* * *
76585095 AACTTCAGAGAGATAAGATTTGCTAT
65 AACTTCAGAAAGATAAGATTT-ATAA
* * * * * * * * *
76585121 C-TCTGATCTACTCCACT-AAAGCTTCAGGGAGATAAGATCT-ATAACTTCAACCTGCCCCACTA
1 CTTC-AATCTGCTCCACTGCAA-CTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCTACTA
** * * *
76585183 CAACTTCAGGGAGACAATATTTGTAA
64 CAACTTCAGAAAGATAAGATTTATAA
* * * * * * * * *
76585209 CCTTCAGTCTGTTCCACTACAACTTTA-AGGAGATAAGACTTG-TAACTTCAACCTGTTCCACTG
1 -CTTCAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGATATCTTCAATCTGCTCTAC--
* * * * *
76585272 TA-AATTTAAG-AAGATACGGTTTATAG
62 TACAACTTCAGAAAGATAAGATTTATAA
* * * * * *
76585298 CTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCTACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCTACTACA
*
76585363 ACTTCAGAAAGATAAGATCTATAA
66 ACTTCAGAAAGATAAGATTTATAA
* *
76585387 CTTCAATCTGCTCCACGGCAACTTTAG-GTAGATAAGATTTG
1 CTTCAATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTG
76585428 TAATTTGTAG
Statistics
Matches: 363, Mismatches: 100, Indels: 48
0.71 0.20 0.09
Matches are distributed among these distances:
87 1 0.00
88 45 0.12
89 234 0.64
90 46 0.13
91 37 0.10
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (89 bp):
CTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCTACTACA
ACTTCAGAAAGATAAGATTTATAA
Found at i:76585549 original size:140 final size:140
Alignment explanation
Indices: 76585295--76585550 Score: 298
Period size: 140 Copynumber: 1.8 Consensus size: 140
76585285 ATACGGTTTA
* * ** *
76585295 TAGCTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCTACT
1 TAGCTTTAATATGCTCTACTGCAAATTCAGAGAAATAAGATTCACTATCTTCAATCTACTCCACT
* * *
76585360 GCAACTTCAGAAAGATAAGATCTATAACTTCAATCTGCTCCACGGCAACTTTAGGTAGATAAGAT
66 GCAACTTCAGAAAGATAAGATCTATAACTTCAAACAGCTCCACGACAACTTTAGGTAGATAAGAT
76585425 TTGTAATTTG
131 TTGTAATTTG
* * * * * * **
76585435 TAGCTTTAATCTGTTCTACTGCAAATTTAGGGAAATAAGATTCACTATCTTTAGTCTGTTCCACT
1 TAGCTTTAATATGCTCTACTGCAAATTCAGAGAAATAAGATTCACTATCTTCAATCTACTCCACT
* *** * *
76585500 GCAACTTTAGGGTGATAAGA-CTTGTAACTTCAAACAGCTCCACTACAACTT
66 GCAACTTCAGAAAGATAAGATC-TATAACTTCAAACAGCTCCACGACAACTT
76585551 CAGGGGTATG
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
139 1 0.01
140 92 0.99
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (140 bp):
TAGCTTTAATATGCTCTACTGCAAATTCAGAGAAATAAGATTCACTATCTTCAATCTACTCCACT
GCAACTTCAGAAAGATAAGATCTATAACTTCAAACAGCTCCACGACAACTTTAGGTAGATAAGAT
TTGTAATTTG
Found at i:76598736 original size:85 final size:84
Alignment explanation
Indices: 76598575--76598736 Score: 209
Period size: 85 Copynumber: 1.9 Consensus size: 84
76598565 AAATATTAGA
* **
76598575 TAAATAAATATAAAAAGAAATATAATAGAAATAATAATGCAAAACTAATTAATTTAATAATATGA
1 TAAATAAATATAAAAAGAAATATAATAGAAATAATAATACAAAACTAATTAATTTAATAATAAAA
* *
76598640 TAATAATAATAATAACAAG
66 TAACAAAAATAATAACAAG
* * ** *
76598659 TAAATAAATA-AAAAGGAAAATAATAATAGTAATAATAATATTAAATTAATTAATTTAATAATAA
1 TAAATAAATATAAAAAG-AAAT-ATAATAGAAATAATAATACAAAACTAATTAATTTAATAATAA
76598723 AATAACAAAAATAA
64 AATAACAAAAATAA
76598737 CAAAAAAAGG
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
83 5 0.08
84 14 0.21
85 47 0.71
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (84 bp):
TAAATAAATATAAAAAGAAATATAATAGAAATAATAATACAAAACTAATTAATTTAATAATAAAA
TAACAAAAATAATAACAAG
Found at i:76600931 original size:27 final size:28
Alignment explanation
Indices: 76600877--76600931 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
76600867 ATTGAATTCT
* *
76600877 ATTTTTTATTTAATATATAATTAGTTTTA
1 ATTTTTTA-TTAATATAAAAATAGTTTTA
*
76600906 ATTTTTTA-TAATATAAAAATATTTTT
1 ATTTTTTATTAATATAAAAATAGTTTT
76600932 TTTGAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 15 0.65
29 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (28 bp):
ATTTTTTATTAATATAAAAATAGTTTTA
Found at i:76602102 original size:18 final size:20
Alignment explanation
Indices: 76602058--76602107 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
76602048 GACTTATCTC
*
76602058 TTTCTTTCTTCTCCCGTTTT
1 TTTCTTTCTTCTCCCGTTCT
76602078 TTCTCTTTCTTCT-CC-TTCT
1 TT-TCTTTCTTCTCCCGTTCT
76602097 TTTCTTTCTTC
1 TTTCTTTCTTC
76602108 CTTTCCTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 9 0.32
19 5 0.18
20 4 0.14
21 10 0.36
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTCTTTCTTCTCCCGTTCT
Found at i:76602126 original size:21 final size:22
Alignment explanation
Indices: 76602081--76602135 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
76602071 CCGTTTTTTC
* * *
76602081 TCTTTCTTCTCCTTCTTTTCTT
1 TCTTCCTTCTCCTTCTTGTCCT
76602103 TCTTCCTT-TCCTTCTTGTCCT
1 TCTTCCTTCTCCTTCTTGTCCT
*
76602124 TCTCTTCTTCTC
1 TCT-TCCTTCTC
76602136 TATTAATCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 14 0.52
22 11 0.41
23 2 0.07
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (22 bp):
TCTTCCTTCTCCTTCTTGTCCT
Found at i:76607025 original size:29 final size:30
Alignment explanation
Indices: 76606969--76607025 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
76606959 TTGGGCCTTC
*
76606969 CCACACGGGCTAGACACATGGCCGTGTGAG
1 CCACACGGGCTAGACACATGGCCATGTGAG
76606999 CCACACGGGCT-G-CGACATGGCCATGTG
1 CCACACGGGCTAGAC-ACATGGCCATGTG
76607026 CTAGACTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 13 0.52
30 11 0.44
ACGTcount: A:0.21, C:0.32, G:0.33, T:0.14
Consensus pattern (30 bp):
CCACACGGGCTAGACACATGGCCATGTGAG
Found at i:76617490 original size:12 final size:11
Alignment explanation
Indices: 76617462--76617495 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
76617452 TGATTTTTAA
*
76617462 TTTTTATTAAT
1 TTTTTAATAAT
76617473 TTTTTAATAAT
1 TTTTTAATAAT
76617484 TTATTTAATAAT
1 TT-TTTAATAAT
76617496 ATTAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTTTAATAAT
Found at i:76620378 original size:44 final size:44
Alignment explanation
Indices: 76620324--76620904 Score: 340
Period size: 44 Copynumber: 13.5 Consensus size: 44
76620314 AATCCTCTCT
* *
76620324 ACTGAAACTTCAGGGAGATAGGATTACCAGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTACCAGCTTTAATCTGCTCC
* * *
76620368 ACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTG-TCTC
1 ACTGCAACTTCAGGGAGATAAGA-TTACCAGCTTTAATCTGCTC-C
* * * *
76620413 ACTGCAACTTCA-GGAGGATAAGACTTGCTTA-C-TTAGTCCGCTCC
1 ACTGCAACTTCAGGGA-GATAAGA-TTAC-CAGCTTTAATCTGCTCC
* * * *
76620457 ACTACAACTTCAGGGAGATAAGACTA-GATGC---GATCTGCT-C
1 ACTGCAACTTCAGGGAGATAAGATTACCA-GCTTTAATCTGCTCC
* * * * *
76620497 TCTACAATTTCAGAGAGATAAGATCTA--AGGTTTTAATC-GC-CC
1 ACTGCAACTTCAGGGAGATAAGAT-TACCA-GCTTTAATCTGCTCC
* * *
76620539 ACTGCAACTTCAGCGAGATAGGATTACCAGCTTTAATCTGGTCC
1 ACTGCAACTTCAGGGAGATAAGATTACCAGCTTTAATCTGCTCC
* * * * *
76620583 ACTACAATTTCAGGGAGATAAGATTA-GATGC---GATTTGCT-C
1 ACTGCAACTTCAGGGAGATAAGATTACCA-GCTTTAATCTGCTCC
* * * * * *
76620623 TCTACAATTTCAGAGAGATAAGATCTA--AGGTTTTAATCCGC-CC
1 ACTGCAACTTCAGGGAGATAAGAT-TACCA-GCTTTAATCTGCTCC
* * *
76620666 ACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTACCAGCTTTAATCTGCTCC
* * *
76620710 ACTGCAACTTCAGGGAGATAAGATTA-GATGC---GATCTACT-C
1 ACTGCAACTTCAGGGAGATAAGATTACCA-GCTTTAATCTGCTCC
* * * * * *
76620750 TCTACAATTTCAGAGAGATAAGATCTA--AGGTTTTAATCCGC-CC
1 ACTGCAACTTCAGGGAGATAAGAT-TACCA-GCTTTAATCTGCTCC
* * *
76620793 ACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTACCAGCTTTAATCTGCTCC
* * * *
76620837 ACTGCAACTTTAGGGAGATAAGATTTGCCATCTTTAGTCTGC-CTC
1 ACTGCAACTTCAGGGAGATAAGA-TTACCAGCTTTAATCTGCTC-C
*
76620882 ACTGCAACTTCAAGGAGATAAGA
1 ACTGCAACTTCAGGGAGATAAGA
76620905 CTCGATCTGT
Statistics
Matches: 414, Mismatches: 86, Indels: 73
0.72 0.15 0.13
Matches are distributed among these distances:
40 71 0.17
41 25 0.06
42 34 0.08
43 76 0.18
44 127 0.31
45 80 0.19
46 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTACCAGCTTTAATCTGCTCC
Found at i:76620515 original size:40 final size:41
Alignment explanation
Indices: 76620456--76620772 Score: 122
Period size: 40 Copynumber: 7.6 Consensus size: 41
76620446 TAGTCCGCTC
* * *
76620456 CACTACAACTTCAGGGAGATAAGACTA-GATGCGATCTGCT
1 CACTACAATTTCAGAGAGATAAGACTACGATGCAATCTGCT
* * * ** *
76620496 CTCTACAATTTCAGAGAGATAAGATCTAAGGTTTTAATC-GCC
1 CACTACAATTTCAGAGAGATAAGA-CT-ACGATGCAATCTGCT
* * * * * * *
76620538 CACTGCAACTTCAGCGAGATAGGATTACCA-GCTTTAATCTGGT
1 CACTACAATTTCAGAGAGATAAGACTACGATGC---AATCTGCT
* * * *
76620581 CCACTACAATTTCAGGGAGATAAGATTA-GATGCGATTTGCT
1 -CACTACAATTTCAGAGAGATAAGACTACGATGCAATCTGCT
* * * ** * *
76620622 CTCTACAATTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCC
1 CACTACAATTTCAGAGAGATAAGA-CT-ACGATGCAATCTGCT
* * * * * * **
76620665 CACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCT
1 CACTACAATTTCAGAGAGATAAGACTA-C-GATGCAATCTGCT
* * * * * *
76620708 CCACTGCAACTTCAGGGAGATAAGATTA-GATGCGATCTACT
1 -CACTACAATTTCAGAGAGATAAGACTACGATGCAATCTGCT
*
76620749 CTCTACAATTTCAGAGAGATAAGA
1 CACTACAATTTCAGAGAGATAAGA
76620773 TCTAAGGTTT
Statistics
Matches: 202, Mismatches: 60, Indels: 30
0.69 0.21 0.10
Matches are distributed among these distances:
40 64 0.32
41 18 0.09
42 28 0.14
43 42 0.21
44 50 0.25
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (41 bp):
CACTACAATTTCAGAGAGATAAGACTACGATGCAATCTGCT
Found at i:76620731 original size:127 final size:127
Alignment explanation
Indices: 76620452--76620861 Score: 732
Period size: 127 Copynumber: 3.2 Consensus size: 127
76620442 TACTTAGTCC
*
76620452 GCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATA
*
76620517 AGATCTAAGGTTTTAAT-CGCCCACTGCAACTTCAGCGAGATAGGATTACCAGCTTTAATCT
66 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
* * *
76620578 GGTCCACTACAATTTCAGGGAGATAAGATTAGATGCGATTTGCTCTCTACAATTTCAGAGAGATA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATA
76620643 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
66 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
* *
76620705 GCTCCACTGCAACTTCAGGGAGATAAGATTAGATGCGATCTACTCTCTACAATTTCAGAGAGATA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATA
76620770 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
66 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
* *
76620832 GCTCCACTGCAACTTTAGGGAGATAAGATT
1 GCTCCACTACAACTTCAGGGAGATAAGATT
76620862 TGCCATCTTT
Statistics
Matches: 272, Mismatches: 11, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
126 78 0.29
127 194 0.71
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (127 bp):
GCTCCACTACAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATA
AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
Found at i:76629007 original size:27 final size:28
Alignment explanation
Indices: 76628969--76629025 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
76628959 TTTTTTCATA
* *
76628969 TTTTATTTTTTATT-GTTTTTGTTTGTT
1 TTTTATCTTTTATTAATTTTTGTTTGTT
*
76628996 TTTTATCTTTTATTAATTTTTTTTTGTT
1 TTTTATCTTTTATTAATTTTTGTTTGTT
76629024 TT
1 TT
76629026 GCTTCTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.11, C:0.02, G:0.07, T:0.81
Consensus pattern (28 bp):
TTTTATCTTTTATTAATTTTTGTTTGTT
Found at i:76629032 original size:28 final size:27
Alignment explanation
Indices: 76628976--76629034 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
76628966 ATATTTTATT
* *
76628976 TTTTATTGTTTTTGTTTGTTTTTTATC
1 TTTTATTATTTTTGTTTGTTTTCTATC
*
76629003 TTTTATTAATTTTTTTTTGTTTTGCT-TC
1 TTTTATT-ATTTTTGTTTGTTTT-CTATC
76629031 TTTT
1 TTTT
76629035 GTTGTATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.26
28 19 0.70
29 1 0.04
ACGTcount: A:0.08, C:0.05, G:0.08, T:0.78
Consensus pattern (27 bp):
TTTTATTATTTTTGTTTGTTTTCTATC
Found at i:76629071 original size:29 final size:28
Alignment explanation
Indices: 76629039--76629227 Score: 104
Period size: 28 Copynumber: 6.6 Consensus size: 28
76629029 TCTTTTGTTG
76629039 TATTATTTTTCTTTTTTTAAAATTTTTTT
1 TATTATTTTT-TTTTTTTAAAATTTTTTT
**
76629068 TATTATTTTTTTTTTATT-TTATTTTTTT
1 TATTATTTTTTTTTT-TTAAAATTTTTTT
*
76629096 T-TT-TTTTATTTTCTTTCAAAATTTTTTTT
1 TATTATTTT-TTTT-TTTTAAAA-TTTTTTT
* *** * *
76629125 TTTTACAATTTTTTTTTATTAATTTCTATT
1 TATTATTTTTTTTTTTTA-AAATTT-TTTT
*
76629155 T-TT-TTTTTTTTTTTTAATATTTTATTT
1 TATTATTTTTTTTTTTTAAAATTTT-TTT
* *
76629182 TGTT-TTTTCTTTAAATTTTTTAAATTTTTTT
1 TATTATTTT-TTT---TTTTTAAAATTTTTTT
*
76629213 T-TAATTTTTTTTTTT
1 TATTATTTTTTTTTTT
76629228 ACTTTTTTTA
Statistics
Matches: 124, Mismatches: 20, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
26 5 0.04
27 18 0.15
28 33 0.27
29 32 0.26
30 16 0.13
31 9 0.07
32 11 0.09
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (28 bp):
TATTATTTTTTTTTTTTAAAATTTTTTT
Found at i:76629076 original size:11 final size:10
Alignment explanation
Indices: 76629062--76629241 Score: 98
Period size: 10 Copynumber: 17.4 Consensus size: 10
76629052 TTTTTAAAAT
76629062 TTTTTTTATTA
1 TTTTTTT-TTA
76629073 TTTTTTTTTTA
1 -TTTTTTTTTA
76629084 TTTTATTTTT-
1 TTTT-TTTTTA
76629094 TTTTTTTTTA
1 TTTTTTTTTA
* *
76629104 TTTTCTTTCA
1 TTTTTTTTTA
***
76629114 AAATTTTTT-
1 TTTTTTTTTA
***
76629123 TTTTTTACAA
1 TTTTTTTTTA
76629133 TTTTTTTTTA
1 TTTTTTTTTA
** *
76629143 TTAATTTCTA
1 TTTTTTTTTA
76629153 TTTTTTTTT-
1 TTTTTTTTTA
76629162 TTTTTTTTAATA
1 TTTTTTTT--TA
* *
76629174 TTTTATTTTG
1 TTTTTTTTTA
76629184 TTTTTTCTTTAA
1 TTTTTT-TTT-A
* **
76629196 ATTTTTTAAA
1 TTTTTTTTTA
76629206 TTTTTTTTTAA
1 TTTTTTTTT-A
76629217 TTTTTTTTT-
1 TTTTTTTTTA
76629226 TTACTTTTTTTA
1 TT--TTTTTTTA
76629238 TTTT
1 TTTT
76629242 CTAATAATTT
Statistics
Matches: 124, Mismatches: 32, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
9 18 0.15
10 55 0.44
11 30 0.24
12 21 0.17
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.79
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:76629091 original size:28 final size:28
Alignment explanation
Indices: 76628967--76629187 Score: 87
Period size: 29 Copynumber: 7.4 Consensus size: 28
76628957 TGTTTTTTCA
*
76628967 TATTTTATTTT-TTATTGTTTTTGTTTGTTT
1 TATTTT-TTTTATTATT-TTTTT-TTTATTT
* *
76628997 T-TTATCTTTTATTAATTTTTTTTTGTTTTGCT
1 TATT-TTTTTTATT-ATTTTTTTTT-TATT--T
* * *
76629029 TCTTTTGTTGTATTATTTTTCTTTTT-TTAA
1 TATTTT-TTTTATTATTTTT-TTTTTATT-T
*
76629059 AATTTTTTTTATTATTTTTTTTTTATTT
1 TATTTTTTTTATTATTTTTTTTTTATTT
*
76629087 TATTTTTTTT-TTTTTTATTTTCTTTCAAAATTT
1 TATTTTTTTTATTATTT-TTTT-TTT----ATTT
**
76629120 T-TTTTTTTTACAATTTTTTTTTATTAATTT
1 TATTTTTTTTATTA-TTTTTTTT-TT-ATTT
**
76629150 CTATTTTTTTT-TT-TTTTTTTAATATTT
1 -TATTTTTTTTATTATTTTTTTTTTATTT
76629177 TATTTTGTTTT
1 TATTTT-TTTT
76629188 TTCTTTAAAT
Statistics
Matches: 150, Mismatches: 19, Indels: 47
0.69 0.09 0.22
Matches are distributed among these distances:
26 6 0.04
27 13 0.09
28 19 0.13
29 32 0.21
30 21 0.14
31 6 0.04
32 27 0.18
33 23 0.15
34 3 0.02
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.78
Consensus pattern (28 bp):
TATTTTTTTTATTATTTTTTTTTTATTT
Found at i:76629166 original size:25 final size:27
Alignment explanation
Indices: 76629133--76629194 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 27
76629123 TTTTTTACAA
76629133 TTTTTTTTTATTAAT-TTCTATTTT-T
1 TTTTTTTTTATTAATATTCTATTTTGT
* *
76629158 TTTTTTTTTTTTAATATTTTATTTTGT
1 TTTTTTTTTATTAATATTCTATTTTGT
*
76629185 TTTTTCTTTA
1 TTTTTTTTTA
76629195 AATTTTTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 14 0.45
26 8 0.26
27 9 0.29
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.81
Consensus pattern (27 bp):
TTTTTTTTTATTAATATTCTATTTTGT
Found at i:76629195 original size:24 final size:21
Alignment explanation
Indices: 76629044--76629237 Score: 108
Period size: 22 Copynumber: 8.7 Consensus size: 21
76629034 TGTTGTATTA
* *
76629044 TTTTTCTTTTTTTAAAATTTT
1 TTTTTTTTTTTTTAATATTTT
**
76629065 TTTTATTATTTTTTTTTTATTTT
1 TTTT-TT-TTTTTTTAATATTTT
* *
76629088 ATTTTTTTTTTTTTTATTTTCTT
1 -TTTTTTTTTTTTTAATATT-TT
76629111 TCAAAATTTTTTTTTTTTACA-ATTTT
1 T-----TTTTTTTTTTTTA-ATATTTT
* ** *
76629137 TTTTTATTAATTT-CTATTTT
1 TTTTTTTTTTTTTAATATTTT
76629157 TTTTTTTTTTTTTAATATTTT
1 TTTTTTTTTTTTTAATATTTT
76629178 ATTTTGTTTTTTCTTTAA-ATTTT
1 -TTTT-TTTTTT-TTTAATATTTT
**
76629201 TTAAATTTTTTTTTAAT-TTTT
1 TT-TTTTTTTTTTTAATATTTT
76629222 TTTTTTACTTTTTTTA
1 TTTTTT--TTTTTTTA
76629238 TTTTCTAATA
Statistics
Matches: 134, Mismatches: 20, Indels: 37
0.70 0.10 0.19
Matches are distributed among these distances:
20 17 0.13
21 30 0.22
22 33 0.25
23 27 0.20
24 9 0.07
26 3 0.02
27 14 0.10
28 1 0.01
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.78
Consensus pattern (21 bp):
TTTTTTTTTTTTTAATATTTT
Found at i:76629202 original size:25 final size:22
Alignment explanation
Indices: 76629041--76629237 Score: 97
Period size: 23 Copynumber: 8.8 Consensus size: 22
76629031 TTTTGTTGTA
* *
76629041 TTATTTTTCTTTTTTTAAAATT
1 TTATTTTTTTTTTTTTAATATT
**
76629063 TT-TTTTATTATTTTTTTTTTATT
1 TTATTTT-TT-TTTTTTTAATATT
* *
76629086 TTATTTTTTTTTTTTTTATTTTCT
1 TTA-TTTTTTTTTTTTTAATAT-T
*
76629110 TTCAAAATTTTTTTTTTTTACA-ATT
1 TT---ATTTTTTTTTTTTTA-ATATT
* ** *
76629135 TT-TTTTTATTAATTT-CTATT
1 TTATTTTTTTTTTTTTAATATT
76629155 TT-TTTTTTTTTTTTTAATATT
1 TTATTTTTTTTTTTTTAATATT
76629176 TTATTTTGTTTTTTCTTTAA-ATT
1 TTATTTT-TTTTTT-TTTAATATT
**
76629199 TT-TTAAATTTTTTTTTAAT-TT
1 TTATT-TTTTTTTTTTTAATATT
76629220 TT-TTTTTTACTTTTTTTA
1 TTATTTTTT--TTTTTTTA
76629238 TTTTCTAATA
Statistics
Matches: 135, Mismatches: 22, Indels: 36
0.70 0.11 0.19
Matches are distributed among these distances:
20 17 0.13
21 30 0.22
22 23 0.17
23 33 0.24
24 10 0.07
25 7 0.05
26 14 0.10
27 1 0.01
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.78
Consensus pattern (22 bp):
TTATTTTTTTTTTTTTAATATT
Found at i:76629233 original size:13 final size:13
Alignment explanation
Indices: 76629045--76629241 Score: 80
Period size: 14 Copynumber: 13.8 Consensus size: 13
76629035 GTTGTATTAT
76629045 TTTTCTTTTTTTAAAA
1 TTTT-TTTTTTT--AA
* *
76629061 TTTTTTTTATTATT
1 TTTTTTTTTTTA-A
*
76629075 TTTTTTTTATTTTA
1 TTTTTTTT-TTTAA
76629089 TTTTTTTTTTT--
1 TTTTTTTTTTTAA
*
76629100 TTTATTTTCTTTCAAAA
1 TTT-TTTT-TTT--TAA
76629117 TTTTTTTTTTTTACAA
1 -TTTTTTTTTTT--AA
76629133 TTTTTTTTTATTAA
1 TTTTTTTTT-TTAA
*
76629147 TTTCTATTTTTT--
1 TTT-TTTTTTTTAA
76629159 TTTTTTTTTTTAA
1 TTTTTTTTTTTAA
**
76629172 TATTTTATTTTGTTTT
1 T-TTTT-TTTT-TTAA
76629188 TTCTTTAAATTTTTTAA
1 TT-TTT---TTTTTTAA
*
76629205 -ATTTTTTTTTAA
1 TTTTTTTTTTTAA
*
76629217 TTTTTTTTTTTAC
1 TTTTTTTTTTTAA
76629230 TTTTTTTATTTT
1 TTTTTTT-TTTT
76629242 CTAATAATTT
Statistics
Matches: 142, Mismatches: 16, Indels: 48
0.69 0.08 0.23
Matches are distributed among these distances:
11 10 0.07
12 15 0.11
13 25 0.18
14 31 0.22
15 30 0.21
16 17 0.12
17 6 0.04
18 8 0.06
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTTTAA
Found at i:76629477 original size:26 final size:24
Alignment explanation
Indices: 76629368--76629538 Score: 77
Period size: 24 Copynumber: 7.2 Consensus size: 24
76629358 TGTGTTATCT
* *
76629368 TTTTATTTCT-TTTTATTTT-TTT
1 TTTTATTTTTATTTTTTTTTATTT
* **
76629390 TTTAATTTTTATTTTTTTTCCTTT
1 TTTTATTTTTATTTTTTTTTATTT
* * * *
76629414 TTTTCTGTTTT-TTTTGTTCTCTTT
1 TTTTAT-TTTTATTTTTTTTTATTT
* * *
76629438 CTTTGTTATATT-TTTTATTTTATTT
1 TTTTATT-T-TTATTTTTTTTTATTT
* *
76629463 ATTTCTA-ATTT-TTTTTTTTT-TTC
1 -TTT-TATTTTTATTTTTTTTTATTT
* * *
76629486 TTTAATTTTTGTTTTTTTTTACTT
1 TTTTATTTTTATTTTTTTTTATTT
*
76629510 TTTTATTTTTTTTTTTTTTTATATT
1 TTTTATTTTTATTTTTTTTTAT-TT
76629535 TTTT
1 TTTT
76629539 TCCTTTAAAA
Statistics
Matches: 112, Mismatches: 26, Indels: 19
0.71 0.17 0.12
Matches are distributed among these distances:
21 1 0.01
22 14 0.12
23 19 0.17
24 52 0.46
25 23 0.21
26 2 0.02
27 1 0.01
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (24 bp):
TTTTATTTTTATTTTTTTTTATTT
Found at i:76629500 original size:25 final size:22
Alignment explanation
Indices: 76629367--76629529 Score: 103
Period size: 23 Copynumber: 7.0 Consensus size: 22
76629357 TTGTGTTATC
* *
76629367 TTTTTATTTCTTTTTATTTTTT
1 TTTTTATTTTTTTTTTTTTTTT
*
76629389 TTTTAATTTTTATTTTTTTTCCTTT
1 TTTTTATTTTT-TTTTTTTT--TTT
*
76629414 TTTTCTGTTTTTTTTGTTCTCTTTCTT
1 TTTT-TATTTTTTTT-TT-T-TTT-TT
* * * *
76629441 TGTTATATTTTTTATTTTATTTA
1 T-TTTTATTTTTTTTTTTTTTTT
* *
76629464 TTTCTA-ATTTTTTTTTTTTTT
1 TTTTTATTTTTTTTTTTTTTTT
* * *
76629485 CTTTAATTTTTGTTTTTTTTTACT
1 TTTTTATTTTT-TTTTTTTTT-TT
76629509 TTTTTATTTTTTTTTTTTTTT
1 TTTTTATTTTTTTTTTTTTTT
76629530 ATATTTTTTT
Statistics
Matches: 106, Mismatches: 23, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
21 14 0.13
22 16 0.15
23 27 0.25
24 12 0.11
25 11 0.10
26 10 0.09
27 12 0.11
28 4 0.04
ACGTcount: A:0.10, C:0.06, G:0.02, T:0.82
Consensus pattern (22 bp):
TTTTTATTTTTTTTTTTTTTTT
Found at i:76629521 original size:18 final size:17
Alignment explanation
Indices: 76629362--76629539 Score: 91
Period size: 18 Copynumber: 10.1 Consensus size: 17
76629352 TTTGATTGTG
*
76629362 TTATCTTTTTATTTCTTT
1 TTAT-TTTTTATTTTTTT
76629380 TTATTTTTT-TTTTAATTT
1 TTATTTTTTATTTT--TTT
76629398 TTATTTTTT-TTCCTTTTT
1 TTATTTTTTATT--TTTTT
*
76629416 TTCTGTTTTT-TTTGTTCTCT
1 TTAT-TTTTTATTT-TT-T-T
* *
76629436 TTCTTTGTTATATTTTTTA
1 TTATTT-TT-TATTTTTTT
* **
76629455 TT-TTATTTATTTCTAAT
1 TTATTTTTTATTT-TTTT
*
76629472 TT-TTTTTT-TTTTTCT
1 TTATTTTTTATTTTTTT
* *
76629487 TTAATTTTTGTTTTTTT
1 TTATTTTTTATTTTTTT
76629504 TTACTTTTTTATTTTTTT
1 TTA-TTTTTTATTTTTTT
76629522 TT-TTTTTTATATTTTTT
1 TTATTTTTTAT-TTTTTT
76629539 T
1 T
76629540 CCTTTAAAAA
Statistics
Matches: 130, Mismatches: 14, Indels: 33
0.73 0.08 0.19
Matches are distributed among these distances:
15 4 0.03
16 24 0.18
17 32 0.25
18 42 0.32
19 12 0.09
20 10 0.08
21 3 0.02
22 3 0.02
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (17 bp):
TTATTTTTTATTTTTTT
Found at i:76629557 original size:1 final size:1
Alignment explanation
Indices: 76629367--76629539 Score: 58
Period size: 1 Copynumber: 173.0 Consensus size: 1
76629357 TTGTGTTATC
* * * ** * ** * * *
76629367 TTTTTATTTCTTTTTATTTTTTTTTTAATTTTTATTTTTTTTCCTTTTTTTCTGTTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * * * ** * ** *
76629432 CTCTTTCTTTGTTATATTTTTTATTTTATTTATTTCTAATTTTTTTTTTTTTTCTTTAATTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * *
76629497 TTTTTTTTTACTTTTTTATTTTTTTTTTTTTTTATATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
76629540 CCTTTAAAAA
Statistics
Matches: 117, Mismatches: 55, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 117 1.00
ACGTcount: A:0.10, C:0.06, G:0.02, T:0.82
Consensus pattern (1 bp):
T
Found at i:76629568 original size:17 final size:16
Alignment explanation
Indices: 76629446--76629570 Score: 53
Period size: 17 Copynumber: 7.8 Consensus size: 16
76629436 TTCTTTGTTA
* *
76629446 TATTTTTTATTTTATT
1 TATTTTTAATTTTTTT
*
76629462 TATTTCTAA--TTTTT
1 TATTTTTAATTTTTTT
*
76629476 T-TTTTT--TTTCTTT
1 TATTTTTAATTTTTTT
* **
76629489 AATTTTTGTTTTTTTT
1 TATTTTTAATTTTTTT
*
76629505 TACTTTTTTATTTTTTTT
1 TA--TTTTTAATTTTTTT
*
76629523 TTTTTTTATATTTTTTT
1 TATTTTTA-ATTTTTTT
** **
76629540 CCTTTAAAAATTTTTTT
1 TATTT-TTAATTTTTTT
76629557 TATTTGTTAATTTT
1 TATTT-TTAATTTT
76629571 ATTAAATTTT
Statistics
Matches: 80, Mismatches: 20, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
13 8 0.10
14 10 0.12
16 20 0.25
17 27 0.34
18 15 0.19
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (16 bp):
TATTTTTAATTTTTTT
Found at i:76638605 original size:45 final size:46
Alignment explanation
Indices: 76638554--76638728 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
76638544 TGTAACCCGC
*
76638554 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
76638599 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
76638649 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
76638692 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
76638729 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:76638719 original size:93 final size:92
Alignment explanation
Indices: 76638561--76638731 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
76638551 CGCCCATAAG
*
76638561 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76638626 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
76638653 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76638718 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
76638732 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76642685 original size:2 final size:2
Alignment explanation
Indices: 76642678--76642711 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76642668 AAGTATAATA
76642678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76642712 TCAGCTCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76648127 original size:28 final size:30
Alignment explanation
Indices: 76648089--76648145 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
76648079 CATAAAGAAC
76648089 TAAATTCTTAAAAATAAAAATAA-ATAAAT
1 TAAATTCTTAAAAATAAAAATAATATAAAT
**
76648118 TAAATT-TTAAATTTAAAAATAATATAAA
1 TAAATTCTTAAAAATAAAAATAATATAAA
76648146 GAATTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (30 bp):
TAAATTCTTAAAAATAAAAATAATATAAAT
Found at i:76649166 original size:16 final size:18
Alignment explanation
Indices: 76649145--76649183 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
76649135 TAATTCTTGA
76649145 CATTTT-AGATTTAGG-T
1 CATTTTAAGATTTAGGAT
*
76649161 CATTTTAAGTTTTAGGAT
1 CATTTTAAGATTTAGGAT
76649179 CATTT
1 CATTT
76649184 ATTCAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 8 0.40
18 6 0.30
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.51
Consensus pattern (18 bp):
CATTTTAAGATTTAGGAT
Found at i:76651617 original size:6 final size:6
Alignment explanation
Indices: 76651608--76651632 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
76651598 AGCAGAAAAA
76651608 TTGCAT TTGCAT TTGCAT TTGCAT T
1 TTGCAT TTGCAT TTGCAT TTGCAT T
76651633 GCAGCCCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TTGCAT
Found at i:76656440 original size:29 final size:28
Alignment explanation
Indices: 76656386--76656440 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
76656376 CTCTTTAAAA
76656386 TTTTGGAATTTAGTCTCTATACTTTTAT
1 TTTTGGAATTTAGTCTCTATACTTTTAT
*
76656414 TTTTAGGAATTTAGTCTCTCTACTTTT
1 TTTT-GGAATTTAGTCTCTATACTTTT
76656441 CAGATTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.56
Consensus pattern (28 bp):
TTTTGGAATTTAGTCTCTATACTTTTAT
Found at i:76656449 original size:31 final size:29
Alignment explanation
Indices: 76656384--76656449 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
76656374 TACTCTTTAA
76656384 AATTTT-GGAATTTAGTCTCTATACTTTT
1 AATTTTAGGAATTTAGTCTCTATACTTTT
* *
76656412 ATTTTTAGGAATTTAGTCTCTCTACTTTT
1 AATTTTAGGAATTTAGTCTCTATACTTTT
76656441 CAGATTTTA
1 -A-ATTTTA
76656450 AAATTCAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 5 0.16
29 21 0.66
30 1 0.03
31 5 0.16
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.53
Consensus pattern (29 bp):
AATTTTAGGAATTTAGTCTCTATACTTTT
Found at i:76680525 original size:31 final size:31
Alignment explanation
Indices: 76680465--76680525 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
76680455 ATATATTTAG
***
76680465 TTTATATTTTTAAATTTTTTCATTATTAATC
1 TTTATATTTTTAAATTTTAGAATTATTAATC
76680496 TTTATATTTTTAGAATTTTAGAATT-TTAAT
1 TTTATATTTTTA-AATTTTAGAATTATTAAT
76680526 TTTGATGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (31 bp):
TTTATATTTTTAAATTTTAGAATTATTAATC
Found at i:76682044 original size:11 final size:11
Alignment explanation
Indices: 76682030--76682068 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
76682020 AAATGATACC
76682030 AAAATAATAAA
1 AAAATAATAAA
*
76682041 AAAATAACAAA
1 AAAATAATAAA
*
76682052 AAAA-AGTAAA
1 AAAATAATAAA
76682062 AAAATAA
1 AAAATAA
76682069 CCGTGAACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAATAATAAA
Found at i:76684441 original size:24 final size:24
Alignment explanation
Indices: 76684386--76684442 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
76684376 TTAAATATAC
*
76684386 ATATTTTT-TAAAATTTATTTTTA
1 ATATTTTTAGAAAATTTATTTTTA
76684409 AT-TTATTTAGAAATATTTA-TTTTA
1 ATATT-TTTAGAAA-ATTTATTTTTA
76684433 ATATTTTTAG
1 ATATTTTTAG
76684443 TATTTTTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 2 0.07
23 5 0.17
24 15 0.52
25 7 0.24
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
ATATTTTTAGAAAATTTATTTTTA
Found at i:76688655 original size:13 final size:13
Alignment explanation
Indices: 76688637--76688661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76688627 ATCATTAAAT
76688637 AAAAAAAATTATG
1 AAAAAAAATTATG
76688650 AAAAAAAATTAT
1 AAAAAAAATTAT
76688662 TTAATTCCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAAAAAATTATG
Found at i:76690498 original size:27 final size:26
Alignment explanation
Indices: 76690461--76690513 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
76690451 TGTTAATGCA
* *
76690461 AGTAATTAGTTTTAATCAATTTGAAT
1 AGTAATTAGTTTCAAACAATTTGAAT
*
76690487 AGTAGATTAGTTTCAAACATTTTGAAT
1 AGTA-ATTAGTTTCAAACAATTTGAAT
76690514 CCTTGATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (26 bp):
AGTAATTAGTTTCAAACAATTTGAAT
Found at i:76693755 original size:41 final size:40
Alignment explanation
Indices: 76693710--76693797 Score: 90
Period size: 41 Copynumber: 2.1 Consensus size: 40
76693700 AAACATAATC
* *
76693710 ATATTACCA-AATTACATTGAA-TATTAATTTGATTAGTATGA
1 ATATTA-CATAATTA-ATT-AAGTATTAATTTAATTAATATGA
* *
76693751 ATATTTATATAATTAATTAAGTTTTAATTTAATTAATATGA
1 ATA-TTACATAATTAATTAAGTATTAATTTAATTAATATGA
76693792 ATATTA
1 ATATTA
76693798 TTATTAATGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
40 5 0.12
41 27 0.68
42 8 0.20
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (40 bp):
ATATTACATAATTAATTAAGTATTAATTTAATTAATATGA
Found at i:76695846 original size:18 final size:19
Alignment explanation
Indices: 76695813--76695849 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
76695803 TAAATTATTT
*
76695813 TTTATTTTTATTTTTAATA
1 TTTATTTATATTTTTAATA
76695832 TTTATTTAT-TTTTTAATA
1 TTTATTTATATTTTTAATA
76695850 ATATATTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTTATATTTTTAATA
Found at i:76700380 original size:41 final size:42
Alignment explanation
Indices: 76700314--76700392 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
76700304 CACCTAATAC
* *
76700314 CTCATCGGATTTAATCTGAAGCAATAATACGACACATAGTGT
1 CTCATCGGAATTAATCCGAAGCAATAATACGACACATAGTGT
* *
76700356 CTCATCGGAATT-ATCCGAAGCAATATTACGACGCATA
1 CTCATCGGAATTAATCCGAAGCAATAATACGACACATA
76700393 TAGTGCCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 22 0.67
42 11 0.33
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (42 bp):
CTCATCGGAATTAATCCGAAGCAATAATACGACACATAGTGT
Found at i:76701439 original size:5 final size:5
Alignment explanation
Indices: 76701431--76701465 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
76701421 ATTTATGTTT
76701431 TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA
76701466 ACTTAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:76704708 original size:21 final size:20
Alignment explanation
Indices: 76704682--76704721 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
76704672 AGGTTCAAGT
76704682 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
76704703 TCCACACGGGCGTGTGCCC
1 TCCACACGGGCGTGTGCCC
76704722 TGTGTCAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.12, C:0.40, G:0.30, T:0.17
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:76705288 original size:10 final size:10
Alignment explanation
Indices: 76705273--76705332 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
76705263 TAATTCTAGG
76705273 ATTTAT-TTT
1 ATTTATCTTT
76705282 CATTTATCTTT
1 -ATTTATCTTT
76705293 ATTTATCTTT
1 ATTTATCTTT
*
76705303 AATTATCTTT
1 ATTTATCTTT
*
76705313 AATTAT-TTGT
1 ATTTATCTT-T
76705323 ATTTATCTTT
1 ATTTATCTTT
76705333 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:76707752 original size:46 final size:47
Alignment explanation
Indices: 76707627--76707769 Score: 135
Period size: 46 Copynumber: 2.9 Consensus size: 47
76707617 ATTCATGTTC
* *
76707627 CCATATACGACCATAGCTGGACTATGGCATTGGTGTGATGTGATAATGTGATT
1 CCATATAAGACCATAGCTGGGCTATGGCATT-G-GT-ATGT--T-ATGTGATT
* * *
76707680 CCGTATAAGACCATATCTGGGATATGGCATTGGTATGTTATGTGA-T
1 CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTGATT
* * * * *
76707726 CCATATAAGACCATGGCAGGGCTATGGCTTTGGTGTGTGATGTG
1 CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTG
76707770 TGACAATGTG
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
46 37 0.48
47 6 0.08
48 1 0.01
50 4 0.05
51 2 0.03
52 1 0.01
53 26 0.34
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (47 bp):
CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTGATT
Found at i:76709415 original size:29 final size:29
Alignment explanation
Indices: 76709382--76709441 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
76709372 AATAAGCTTC
* *
76709382 GATTTTTGATTATTTCGATTATGGCAATA
1 GATTTTTGATTATTTCAATTATGCCAATA
*
76709411 GATTTTTGGTTATTTCAATTATGCCAATA
1 GATTTTTGATTATTTCAATTATGCCAATA
76709440 GA
1 GA
76709442 AGTGGTCCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (29 bp):
GATTTTTGATTATTTCAATTATGCCAATA
Found at i:76712357 original size:14 final size:14
Alignment explanation
Indices: 76712338--76712376 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
76712328 TATGATAGTC
76712338 GAAAATGATTTTCG
1 GAAAATGATTTTCG
*
76712352 GAAAATGATTTTTG
1 GAAAATGATTTTCG
76712366 GAAAATGATTT
1 GAAAATGATTT
76712377 ACTTTTCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (14 bp):
GAAAATGATTTTCG
Found at i:76712488 original size:18 final size:18
Alignment explanation
Indices: 76712462--76712504 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
76712452 AAAATCTGTT
76712462 TTTACATATATTAATAAA
1 TTTACATATATTAATAAA
* *
76712480 TTTATATATATTACTAAA
1 TTTACATATATTAATAAA
76712498 TTTACAT
1 TTTACAT
76712505 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTACATATATTAATAAA
Found at i:76726484 original size:104 final size:104
Alignment explanation
Indices: 76726304--76726570 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
76726294 TAACCGTTAT
* **
76726304 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
76726369 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
76726408 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
76726473 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
76726512 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
76726571 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
104 153 0.99
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:76726929 original size:29 final size:29
Alignment explanation
Indices: 76726896--76726959 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
76726886 TAATCCACCA
76726896 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
76726925 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
76726955 CCCAA
1 CCCAA
76726960 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:76726933 original size:30 final size:30
Alignment explanation
Indices: 76726903--76726959 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76726893 CCACCCAACT
76726903 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
76726932 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
76726960 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:76733967 original size:104 final size:105
Alignment explanation
Indices: 76733787--76734054 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
76733777 TAACCGTTAT
* **
76733787 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
76733852 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
76733891 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
76733956 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
76733996 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
76734055 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:76734415 original size:29 final size:29
Alignment explanation
Indices: 76734382--76734445 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
76734372 TAATCCACCA
76734382 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
76734411 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
76734441 CCCAA
1 CCCAA
76734446 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:76734419 original size:30 final size:30
Alignment explanation
Indices: 76734389--76734445 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76734379 CCACCCAACT
76734389 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
76734418 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
76734446 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:76735598 original size:25 final size:25
Alignment explanation
Indices: 76735570--76735624 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
76735560 CTTCTCCAAC
* *
76735570 CTGAATAACT-GTAAGCTCTTCCGAG
1 CTGAATAA-TGGTAAGCTCATACGAG
*
76735595 CTGAATAATGGTAAGTTCATACGAG
1 CTGAATAATGGTAAGCTCATACGAG
76735620 CTGAA
1 CTGAA
76735625 CATCAATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (25 bp):
CTGAATAATGGTAAGCTCATACGAG
Found at i:76736131 original size:8 final size:8
Alignment explanation
Indices: 76736118--76736142 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
76736108 ATCCCACATT
76736118 TTTTACAA
1 TTTTACAA
76736126 TTTTACAA
1 TTTTACAA
76736134 TTTTACAA
1 TTTTACAA
76736142 T
1 T
76736143 ACAATTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTACAA
Found at i:76759773 original size:6 final size:6
Alignment explanation
Indices: 76759753--76759789 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
76759743 TTTACGTCAA
*
76759753 AATTTT AATTAAT AATTAT AATTAT AATTAT AATTAT
1 AATTAT AATT-AT AATTAT AATTAT AATTAT AATTAT
76759790 TACGATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
AATTAT
Found at i:76761007 original size:14 final size:14
Alignment explanation
Indices: 76760971--76761007 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
76760961 TGCTGCCATT
*
76760971 TTATTATTATATTG
1 TTATTATTTTATTG
*
76760985 CTATTATTTTATTG
1 TTATTATTTTATTG
76760999 TTATTATTT
1 TTATTATTT
76761008 GGATATTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (14 bp):
TTATTATTTTATTG
Found at i:76763264 original size:17 final size:17
Alignment explanation
Indices: 76763238--76763277 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
76763228 AGAAACTTCT
76763238 AATT-ATTTATAAATTA
1 AATTGATTTATAAATTA
76763254 AATTGATTTATAAATTA
1 AATTGATTTATAAATTA
76763271 AATTGAT
1 AATTGAT
76763278 GTTTTGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
AATTGATTTATAAATTA
Found at i:76770434 original size:40 final size:40
Alignment explanation
Indices: 76770310--76770456 Score: 118
Period size: 40 Copynumber: 3.7 Consensus size: 40
76770300 GTGCGCAGAA
* * * * *
76770310 GAGCCATACCTACTGAATATATTAAAACGTATGCGCTTTC
1 GAGCCACACCTACTGAATCTACTAAAACATATGCGCTTTT
*** * *
76770350 GA-CTTGTACTTACTGAATCTACTGAAACATATGCGCTTTT
1 GAGC-CACACCTACTGAATCTACTAAAACATATGCGCTTTT
* * * *
76770390 GAGCCACGCCTATTGAATCTACTAAAACGTATGTG-TTTT
1 GAGCCACACCTACTGAATCTACTAAAACATATGCGCTTTT
**
76770429 CGAGCCTTACCTACTGAATCTACTAAAA
1 -GAGCCACACCTACTGAATCTACTAAAA
76770457 AGAATACTCT
Statistics
Matches: 83, Mismatches: 21, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
39 5 0.06
40 77 0.93
41 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (40 bp):
GAGCCACACCTACTGAATCTACTAAAACATATGCGCTTTT
Found at i:76772040 original size:20 final size:20
Alignment explanation
Indices: 76772012--76772050 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
76772002 AAACATACAT
* *
76772012 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
76772032 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
76772051 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:76773255 original size:42 final size:42
Alignment explanation
Indices: 76773187--76773301 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 42
76773177 CTTCGTTTTC
* * * *
76773187 TCGATGCCATAGTTCAACTATTGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACA-AA
* *
76773230 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATAAA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACAAA
76773271 TCGATGCCATAGCTCAGCTATGGTCTTACAC
1 TCGATGCCATAGCTCAGCTATGGTCTTACAC
76773302 GAATCACATA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 3 0.05
42 60 0.94
43 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACAAA
Found at i:76773373 original size:47 final size:46
Alignment explanation
Indices: 76773272--76773395 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
76773262 ATTCATAAAT
* * * * * *
76773272 CGATGCCATAGCTCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
76773318 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
76773365 CGATGCCATATCCTAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
76773396 GAAATCACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:76773412 original size:7 final size:7
Alignment explanation
Indices: 76773400--76773428 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
76773390 TATACGGAAA
76773400 TCACTTG
1 TCACTTG
76773407 TCACTTG
1 TCACTTG
76773414 TCACTTG
1 TCACTTG
76773421 TCACTTG
1 TCACTTG
76773428 T
1 T
76773429 AGCCGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:76773462 original size:31 final size:31
Alignment explanation
Indices: 76773427--76773606 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
76773417 CTTGTCACTT
*
76773427 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
76773458 GTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
76773489 GTAGCC-AGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
76773520 GTAGCCGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76773551 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76773582 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
76773607 TGTCATTTGT
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
31 135 0.99
32 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:76773688 original size:50 final size:51
Alignment explanation
Indices: 76773582--76773710 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
76773572 CACTGATCAG
* * *
76773582 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
* *
76773633 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAAATAAGT
76773683 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
76773711 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
Found at i:76780661 original size:13 final size:13
Alignment explanation
Indices: 76780639--76780681 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
76780629 TTTTGTTCTG
76780639 TTTCTTCTTGGTT
1 TTTCTTCTTGGTT
*
76780652 TTTGTTCTTGTGTT
1 TTTCTTCTTG-GTT
*
76780666 TTTCTTTTTGGTT
1 TTTCTTCTTGGTT
76780679 TTT
1 TTT
76780682 AGAATCGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.00, C:0.09, G:0.16, T:0.74
Consensus pattern (13 bp):
TTTCTTCTTGGTT
Found at i:76784708 original size:85 final size:85
Alignment explanation
Indices: 76784558--76784724 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
76784548 CTCTACATAC
* * * * *
76784558 TTGTGTTGTTGCAGGTATGTCACAGCATCATTCGAAATTAGATTTTGACCTGATCTCTGACATTA
1 TTGTATTGTTGCAGGTATGTCACAGAATCATTCGAAATTAGATTCTGACATGAACTCTGACATTA
* *
76784623 TTTTACTTATGGTGAAATAT
66 TCTTACCTATGGTGAAATAT
* * * * *
76784643 TTGTATTGTTGTAGGTATGTGATAGAATCA-TCTGAAATTGGATTCTGACATGAACTCTGATATT
1 TTGTATTGTTGCAGGTATGTCACAGAATCATTC-GAAATTAGATTCTGACATGAACTCTGACATT
76784707 ATCTTACCTATGGTGAAA
65 ATCTTACCTATGGTGAAA
76784725 GCGTGTCCTA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
84 2 0.03
85 67 0.97
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.40
Consensus pattern (85 bp):
TTGTATTGTTGCAGGTATGTCACAGAATCATTCGAAATTAGATTCTGACATGAACTCTGACATTA
TCTTACCTATGGTGAAATAT
Found at i:76786049 original size:132 final size:132
Alignment explanation
Indices: 76785816--76786060 Score: 357
Period size: 132 Copynumber: 1.9 Consensus size: 132
76785806 ACAGAATCTC
* * * *
76785816 GAAGGAATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCTAACATGTTAGGGCACGATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * *
76785881 GCGAATTGCCAAATATCAAACTTTGCCGTCGTTTTAAAGACTTTTTAAGAGGCATGACTGAAAGT
66 GCGAATTGCCAAATATCAAACTTCGCCGTCGCTTTAAAGAATTTTTAAGAGGCATGACTGAAAGT
76785946 TT
131 TT
* * *
76785948 GAAGGGATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * *
76786013 GCGAATTGCCAAATATCGAA-TCTCGTCTTCGCTTTAAAGAATTTTTAA
66 GCGAATTGCCAAATATCAAACT-TCGCCGTCGCTTTAAAGAATTTTTAA
76786061 ATGAATACTT
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.01
132 98 0.99
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (132 bp):
GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
GCGAATTGCCAAATATCAAACTTCGCCGTCGCTTTAAAGAATTTTTAAGAGGCATGACTGAAAGT
TT
Found at i:76788816 original size:44 final size:44
Alignment explanation
Indices: 76788747--76789361 Score: 720
Period size: 44 Copynumber: 14.0 Consensus size: 44
76788737 AGATTCGCCC
* * * * **
76788747 TCTTTGATCTGCTTCACTGACAATACAAAGATACCAAATCTGCTA
1 TCTTCGATCTGC-TCCCTGCCAATACAGAGACGCCAAATCTGCTA
*
76788792 TCTTCGATCTGTTCCCTGCCAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
** * * *
76788836 TCTTCGATCTGCTATCTGTCAACACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
*
76788880 TCCTT-GATCTGCTCTCC-GCCAATATAGAGACGCCAAATCTGCTA
1 T-CTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATCTGCTA
* * *
76788924 TCATCTATCTGCTCCCTGCCAATACAGAGACGCCAAATTTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* *** * * * * *
76788968 TCTTCGATCTACTTTTTGTCAACACAGAGATGCCAAATCTACCA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
76789012 TCCTT-GATCTGCTCTCC-GCCAATACAGAGACGCCAAATCTGCTA
1 T-CTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATCTGCTA
** ** * *
76789056 TCTTCGATCTGCTTTCTGCCAATACAGAGATACCAAATTTACTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* * *
76789100 TCTTCGATCTGCTCTCTGCCAACACAGAGAGGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* *
76789144 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCTAAATCTGTTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* * *
76789188 TCTTCGATCTGCTCTCTGCCAATACAGAGACACCAAATCTACTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* * * *
76789232 TCCTCGATCTGCTCCTTGCCAATACAGAGACGCCAAATTTGTTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
*
76789276 TCTTCGATCTGCTCTCC-GCCAATATAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATCTGCTA
*
76789320 TCTTCGATCTGC-CCTCTGACAATACAGAGACGCCAAATCTGC
1 TCTTCGATCTGCTCC-CTGCCAATACAGAGACGCCAAATCTGC
76789362 AGGATTCGCC
Statistics
Matches: 479, Mismatches: 80, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.00
43 10 0.02
44 450 0.94
45 18 0.04
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (44 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
Found at i:76792928 original size:14 final size:14
Alignment explanation
Indices: 76792909--76792939 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
76792899 TTTAAAAAAA
*
76792909 AAAAACGGAAATTG
1 AAAAACAGAAATTG
76792923 AAAAACAGAAATTG
1 AAAAACAGAAATTG
76792937 AAA
1 AAA
76792940 GTAGCTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.16, T:0.13
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:76793195 original size:75 final size:75
Alignment explanation
Indices: 76793046--76793331 Score: 351
Period size: 75 Copynumber: 3.7 Consensus size: 75
76793036 CATGTGACTC
*
76793046 GAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTTTGACAAACAGAAATTGAAAATACC
1 GAGGCTCAACTCACCTCTCACAATATGAGTT-G-ATTTTTTTGACAAACAGAAATTGAAAATACC
76793111 TCAGCGTGCCCT
64 TCAGCGTGCCCT
*
76793123 GAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTGACAAACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTC
*
76793188 AGCGTGCCTT
66 AGCGTGCCCT
* * ****
76793198 GAGGCTCAAGTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAACAGAAATTGAAAATAC
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT-TTTGAC--AAACAGAAATTGAAAATAC
* *
76793263 CTCAACACGTGAGCC-
63 CTC-A-GCGTG-CCCT
* ** *
76793278 GAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGAC-AATAGAAATTG
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAATTG
76793332 CATCGCAATA
Statistics
Matches: 183, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
75 75 0.41
76 13 0.07
77 31 0.17
78 22 0.12
79 3 0.02
80 38 0.21
81 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (75 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTC
AGCGTGCCCT
Found at i:76793461 original size:73 final size:72
Alignment explanation
Indices: 76793335--76793964 Score: 505
Period size: 73 Copynumber: 8.2 Consensus size: 72
76793325 GAAATTGCAT
76793335 CGCAATATGAGTTGATTCTTTTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC-C
1 CGCAATATGAGTTGA-T-TTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGCCC-GAGGCTC
76793398 TAACTCACCTCC
62 -AACTCACCTCC
* * *
76793410 CGCCATATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAACGTGCCCCGAGGCTCAAC
1 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAAC
76793475 TCACCTCC
65 TCACCTCC
** * *
76793483 CGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGA
1 CGCAATATGAGTTGATTT------TTGAC----AAACAGAAATTGAAAAT-ACCTC-A-GCGTG-
* * **
76793547 GCCAAGGCTCAACTCACCTAT
52 CCCGAGGCTCAACTCACCTCC
** * * * *
76793568 CGCAATATGAGTTGATTTTTTTCAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCAAGGCTCAA
1 CGCAATATGAGTTGATTTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAA
76793633 CTCACCTCC
64 CTCACCTCC
* * * *
76793642 CGCAACATGAGTTGATTTTTGACAATCAGCAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAAC
1 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAAC
76793707 TCACCTCC
65 TCACCTCC
** * *
76793715 CGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGA
1 CGCAATATGAGTTGATTT------TTGAC----AAACAGAAATTGAAAAT-ACCTC-A-GCGTG-
* * * * *
76793779 GCCAAGGTTCAACTCACTTCT
52 CCCGAGGCTCAACTCACCTCC
* ** * * *
76793800 TGCAATATGAGTTGATTTTTTTGA-AAGTAGAATTTAAAAATACCTCGGCGTGCTCCGAGGCTCA
1 CGCAATATGAGTTGA--TTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGC-CCGAGGCTCA
76793864 ACTCACCTCC
63 ACTCACCTCC
* * *
76793874 CGCAACATGAGTTAATTTTTGACAAACAGCAATTGAAAATACCTCAGCGTGCTCCGAGGCTCAAC
1 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGC-CCGAGGCTCAAC
76793939 TCACCTCC
65 TCACCTCC
76793947 CGCAATATGAGTTGATTT
1 CGCAATATGAGTTGATTT
76793965 AAAAAAATAG
Statistics
Matches: 443, Mismatches: 76, Indels: 74
0.75 0.13 0.12
Matches are distributed among these distances:
72 7 0.02
73 180 0.41
74 84 0.19
75 19 0.04
76 29 0.07
79 7 0.02
81 2 0.00
83 34 0.08
84 4 0.01
85 74 0.17
87 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (72 bp):
CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACT
CACCTCC
Found at i:76793775 original size:232 final size:232
Alignment explanation
Indices: 76793333--76794058 Score: 1186
Period size: 232 Copynumber: 3.1 Consensus size: 232
76793323 TAGAAATTGC
* * * * *
76793333 ATCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC-
1 ATCGCAATATGAGTTGATT-TTTTTAAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCT
* * *
76793397 CTAACTCACCTCCCGCCATATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAACGTGC
65 C-AACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCGTGC
76793462 CCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATT
129 CCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATT
76793527 GAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCT
194 GAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCT
* *
76793566 ATCGCAATATGAGTTGATTTTTTTCAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCAAGGCTC
1 ATCGCAATATGAGTTGATTTTTTTAAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTC
* *
76793631 AACTCACCTCCCGCAACATGAGTTGATTTTTGACAATCAGCAATTGAAAATACCTTAGCGTGCCC
66 AACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCGTGCCC
76793696 CGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATTGA
131 CGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATTGA
* *
76793761 AAGTGACTCAACACGTGAGCCAAGGTTCAACTCACTT
196 AAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCT
* * * * *
76793798 CTTGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTAAAAATACCTCGGCGTGCTCCGAGGCTC
1 ATCGCAATATGAGTTGATTTTTTTAAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTC
* *
76793863 AACTCACCTCCCGCAACATGAGTTAATTTTTGACAAACAGCAATTGAAAATACCTCAGCGTGCTC
66 AACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCGTGCCC
*
76793928 CGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAAATAGACATAAAAACAGAAATTG
131 CGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTT-AAAAAACAGACATAAAAACAGAAATTG
76793993 AAAGTGACTCAACACGTGA-CCAAGGCTCAACTCACCT
195 AAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCT
* *
76794030 CTCGCAATATGAGTTTATTTTTTTGAAAA
1 ATCGCAATATGAGTTGATTTTTTT-AAAA
76794059 CAGAAATGAA
Statistics
Matches: 460, Mismatches: 30, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
232 392 0.85
233 68 0.15
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (232 bp):
ATCGCAATATGAGTTGATTTTTTTAAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTC
AACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAATACCTCAGCGTGCCC
CGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGACATAAAAACAGAAATTGA
AAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCT
Found at i:76803823 original size:20 final size:20
Alignment explanation
Indices: 76803793--76803837 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
76803783 CTGTTTTATT
76803793 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
76803812 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
76803832 ATGGGC
1 ATGGGC
76803838 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:76806092 original size:17 final size:19
Alignment explanation
Indices: 76806050--76806093 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
76806040 ACGAAATTTT
*
76806050 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
76806069 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
76806087 AA-TATTA
1 AATTATTA
76806094 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:76808518 original size:20 final size:20
Alignment explanation
Indices: 76808488--76808532 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
76808478 CTGTTTTATT
76808488 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
76808507 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
76808527 ATGGGC
1 ATGGGC
76808533 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:76808662 original size:28 final size:28
Alignment explanation
Indices: 76808561--76808674 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
76808551 ACTTGTAATA
* * *
76808561 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
76808589 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
76808621 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
76808650 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
76808675 TTTTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:76808695 original size:62 final size:61
Alignment explanation
Indices: 76808553--76808697 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
76808543 ATATCTCGAC
* * *
76808553 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
76808614 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
76808675 TTTTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
76808698 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:76809953 original size:21 final size:20
Alignment explanation
Indices: 76809929--76809967 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
76809919 TATTGAAACT
*
76809929 AAAACTAATACTAATAATAGC
1 AAAACTAATA-AAATAATAGC
76809950 AAAACTAATAAAATAATA
1 AAAACTAATAAAATAATA
76809968 TAGTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAACTAATAAAATAATAGC
Found at i:76810044 original size:22 final size:22
Alignment explanation
Indices: 76810016--76810058 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76810006 ATACGTACAT
*
76810016 ATAATATAATATTAAA-ATATAC
1 ATAATAT-ATATAAAACATATAC
76810038 ATAATATATATAAAACATATA
1 ATAATATATATAAAACATATA
76810059 TTAAGATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
ATAATATATATAAAACATATAC
Found at i:76810500 original size:3 final size:3
Alignment explanation
Indices: 76810492--76810524 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
76810482 ACATTAGAAG
76810492 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
76810525 ATTAAAGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76810993 original size:11 final size:11
Alignment explanation
Indices: 76810959--76811000 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
76810949 AAATCATTTT
76810959 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
76810970 GAA-AAAAAAA
1 GAAGAGAGAAA
*
76810980 GAAGGGAGAAA
1 GAAGAGAGAAA
76810991 GAAGAGAGAA
1 GAAGAGAGAA
76811001 GGGAGAGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:76811656 original size:20 final size:20
Alignment explanation
Indices: 76811629--76811667 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76811619 TGGGTTGTTG
76811629 GGGTTTGTA-AATTGGGTTT
1 GGGTTTGTATAATTGGGTTT
*
76811648 GGGTATTGTATTATTGGGTT
1 GGGT-TTGTATAATTGGGTT
76811668 GATCTGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.49
Consensus pattern (20 bp):
GGGTTTGTATAATTGGGTTT
Found at i:76820227 original size:163 final size:163
Alignment explanation
Indices: 76819957--76820282 Score: 600
Period size: 163 Copynumber: 2.0 Consensus size: 163
76819947 CAACAGATTC
76819957 CTCAATCTTCACCAATTATAGGCTCATATAGATCGAGTTCGGTTCGGGGGGATACATTTCCCTAA
1 CTCAATCTTCACCAATTATAGGCTCATATAGATCGAGTTCGGTTCGGGGGGATACATTTCCCTAA
76820022 GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCCAGAAGCAATCCACTA
66 GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCCAGAAGCAATCCACTA
76820087 GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
131 GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
*
76820120 CTCAATCTTCACCCATTATAGGCTCATATAGATCGAGTTCAGG-TCGGGGGGATACATTTCCCTA
1 CTCAATCTTCACCAATTATAGGCTCATATAGATCGAGTTC-GGTTCGGGGGGATACATTTCCCTA
* * *
76820184 TGACCATGCGGAGATGAAAATCTCATGAAATCATAGGTACGGATGTACCCCAGAAGCAATCCACT
65 AGACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCCAGAAGCAATCCACT
76820249 AGCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
130 AGCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
76820283 TAGTTTCTTA
Statistics
Matches: 158, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
163 156 0.99
164 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.21
Consensus pattern (163 bp):
CTCAATCTTCACCAATTATAGGCTCATATAGATCGAGTTCGGTTCGGGGGGATACATTTCCCTAA
GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCCAGAAGCAATCCACTA
GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
Found at i:76821310 original size:132 final size:132
Alignment explanation
Indices: 76821170--76821413 Score: 382
Period size: 132 Copynumber: 1.8 Consensus size: 132
76821160 TGGAATCTTA
* *
76821170 AAGGGATATTTGATTATTTTGAGCAAATGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* * *
76821235 CGAATTGCCAAATATCAAA-CTTTGCCTTCGTTTTAAAGACTTTTTAAGAGGTATGAGTGAAAGT
66 CGAATTGCCAAATATCAAATC-TCGCCTTCGCTTTAAAGAATTTTTAAGAGGTATGAGTGAAAGT
76821299 TTG
130 TTG
* * *
76821302 AAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACTCAACACGTTAGGGCACTATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* *
76821367 CGAATTGCCAAATATCGAATCTCGTCTTCGCTTTAAAGAATTTTTAA
66 CGAATTGCCAAATATCAAATCTCGCCTTCGCTTTAAAGAATTTTTAA
76821414 ATGAATACTT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
132 100 0.99
133 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (132 bp):
AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
CGAATTGCCAAATATCAAATCTCGCCTTCGCTTTAAAGAATTTTTAAGAGGTATGAGTGAAAGTT
TG
Found at i:76826834 original size:61 final size:61
Alignment explanation
Indices: 76826739--76826861 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
76826729 AATTTTGCCC
76826739 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
1 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
*
76826800 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCTCTACTTTAATTTAAGGAATGT
1 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
76826861 A
1 A
76826862 ATGTTTCTAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (61 bp):
ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
Found at i:76826979 original size:20 final size:20
Alignment explanation
Indices: 76826938--76826981 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
76826928 GTTAATTAAA
*
76826938 TAATTTTTATCAATTGAACTT
1 TAATTTTTA-CAATTAAACTT
76826959 TAATTTTTA-AATTAAACCTT
1 TAATTTTTACAATTAAA-CTT
76826979 TAA
1 TAA
76826982 ATATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 6 0.29
21 9 0.43
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATTTTTACAATTAAACTT
Found at i:76827792 original size:30 final size:28
Alignment explanation
Indices: 76827725--76827794 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 28
76827715 ATTTGTAAAT
*
76827725 TTAAAATTTAGTCTCTGTATTTTTATTT
1 TTAAAATTTAGTCTCTGTATTTTTATTA
* * *
76827753 TTAGGAATTTAGTCTTTTTAATTTTTATATA
1 TTA-AAATTTAGTCTCTGT-ATTTTTAT-TA
76827784 TTAAAATTTAG
1 TTAAAATTTAG
76827795 GTCCAATTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 3 0.09
29 12 0.35
30 15 0.44
31 4 0.12
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (28 bp):
TTAAAATTTAGTCTCTGTATTTTTATTA
Found at i:76829087 original size:3 final size:3
Alignment explanation
Indices: 76829079--76829108 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
76829069 TCCATTTGGT
76829079 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
76829109 AGTTTGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:76829552 original size:6 final size:6
Alignment explanation
Indices: 76829543--76829567 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
76829533 TATATATGTG
76829543 TGTATA TGTATA TGTATA TGTATA T
1 TGTATA TGTATA TGTATA TGTATA T
76829568 ACCGATTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:76833243 original size:109 final size:109
Alignment explanation
Indices: 76833040--76833236 Score: 304
Period size: 109 Copynumber: 1.8 Consensus size: 109
76833030 ATGAATAATT
* * * * * *
76833040 GGATAAAGTCCAACCATGGCAAATGCGCACATGTTAGGATTGAAGACTCACACATCATAGATACA
1 GGATAAAATCCAACCATGGCAAATGCACACATGTTAGAATTGAAGACCCACACATAATAAATACA
76833105 TATGATGAGACTCAAATTTAGGAACCAATACAAAACACAACGTA
66 TATGATGAGACTCAAATTTAGGAACCAATACAAAACACAACGTA
* * *
76833149 GGATAAAATTCAACTATGGCAAATGCACACATTTTAGAATTGAAGACCCACACATAATAAATACA
1 GGATAAAATCCAACCATGGCAAATGCACACATGTTAGAATTGAAGACCCACACATAATAAATACA
*
76833214 TATGATGGGACTCAAATTTAGGA
66 TATGATGAGACTCAAATTTAGGA
76833237 TTCAATATAC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 78 1.00
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (109 bp):
GGATAAAATCCAACCATGGCAAATGCACACATGTTAGAATTGAAGACCCACACATAATAAATACA
TATGATGAGACTCAAATTTAGGAACCAATACAAAACACAACGTA
Found at i:76833289 original size:109 final size:107
Alignment explanation
Indices: 76833030--76833347 Score: 282
Period size: 109 Copynumber: 2.9 Consensus size: 107
76833020 AACACAATGT
* * * *
76833030 ATGAATAATTGGATAAAGTCCAACCATGGCAAATGCGCACATGTTAGGATTGAAGACTCACACAT
1 ATGAATAATTGGATAAAATCCAACTATGGCAAAT--GCACATGTTAGAATTGAAGACCCACACAT
* * *
76833095 CATAGATACATATGATGAGACTCAAATTTAGGAACCAATACAAA
64 AATAAATACATATGATGAGACTCAAATTTAGGAACAAATACAAA
* * * * *
76833139 A-CACA-ACGTAGGATAAAATTCAACTATGGCAAATGCACACATTTTAGAATTGAAGACCCACAC
1 ATGA-ATA-ATTGGATAAAATCCAACTATGGCAAATG--CACATGTTAGAATTGAAGACCCACAC
* *
76833202 ATAATAAATACATATGATGGGACTCAAATTTAGGATTCAATATACAAA
62 ATAATAAATACATATGATGAGACTCAAATTTAGGA-ACAA-ATACAAA
* * ** * * * * * *
76833250 ATGAATAATTGGATAAAACCCATCTATAACAAATGCACATATTA-AGACTAAAGACTCGCACATC
1 ATGAATAATTGGATAAAATCCAACTATGGCAAATGCACATGTTAGA-ATTGAAGACCCACACATA
* * * *
76833314 ACAAATACATATGATAAGATTCAAATATAGGAAC
65 ATAAATACATATGATGAGACTCAAATTTAGGAAC
76833348 TGGATAAAAC
Statistics
Matches: 166, Mismatches: 34, Indels: 19
0.76 0.16 0.09
Matches are distributed among these distances:
107 1 0.01
108 4 0.02
109 127 0.77
110 2 0.01
111 30 0.18
112 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (107 bp):
ATGAATAATTGGATAAAATCCAACTATGGCAAATGCACATGTTAGAATTGAAGACCCACACATAA
TAAATACATATGATGAGACTCAAATTTAGGAACAAATACAAA
Found at i:76834534 original size:20 final size:20
Alignment explanation
Indices: 76834511--76834552 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
76834501 AATATTCTAA
76834511 AAACTACAAATATATATGCC
1 AAACTACAAATATATATGCC
76834531 AAACTACAAATATATATGCC
1 AAACTACAAATATATATGCC
76834551 AA
1 AA
76834553 TATAATGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.19, G:0.05, T:0.24
Consensus pattern (20 bp):
AAACTACAAATATATATGCC
Found at i:76836151 original size:2 final size:2
Alignment explanation
Indices: 76836139--76836167 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
76836129 AGATATGGAA
76836139 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76836168 TGTTTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.