Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 226 of 311
Found at i:76838877 original size:29 final size:29
Alignment explanation
Indices: 76838845--76838939 Score: 82
Period size: 29 Copynumber: 3.3 Consensus size: 29
76838835 TTTTTGTCAT
76838845 TCAACTATAAAAAGTTACAAAATGGGCAC
1 TCAACTATAAAAAGTTACAAAATGGGCAC
** ** ***** * * *
76838874 TCAACTATTCAATCTTATTTTTTTGTCAT
1 TCAACTATAAAAAGTTACAAAATGGGCAC
76838903 TCAACTATAAAAAGTTACAAAATGGGCAC
1 TCAACTATAAAAAGTTACAAAATGGGCAC
76838932 TCAACTAT
1 TCAACTAT
76838940 TCAATCTTGT
Statistics
Matches: 42, Mismatches: 24, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (29 bp):
TCAACTATAAAAAGTTACAAAATGGGCAC
Found at i:76838895 original size:58 final size:58
Alignment explanation
Indices: 76838833--76838968 Score: 245
Period size: 58 Copynumber: 2.3 Consensus size: 58
76838823 TGGTTTTTTT
76838833 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGGGCACTCAACTATTCAATCTTA
1 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGGGCACTCAACTATTCAATCTTA
*
76838891 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGGGCACTCAACTATTCAATCTTG
1 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGGGCACTCAACTATTCAATCTTA
**
76838949 TTTTTTTGTCACCCAACTAT
1 TTTTTTTGTCATTCAACTAT
76838969 CTTGGATTTT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 75 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (58 bp):
TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGGGCACTCAACTATTCAATCTTA
Found at i:76846086 original size:18 final size:18
Alignment explanation
Indices: 76846063--76846112 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
76846053 TTTATTTTTA
76846063 ATTTTT-TATAATTTATAT
1 ATTTTTCTA-AATTTATAT
*
76846081 ATTTTTCTAGATTTATAT
1 ATTTTTCTAAATTTATAT
76846099 ATTATTTCTAAATT
1 ATT-TTTCTAAATT
76846113 CTTTTCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTTTCTAAATTTATAT
Found at i:76851519 original size:30 final size:28
Alignment explanation
Indices: 76851474--76851542 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
76851464 AGGAATAAAC
* *
76851474 TATATACAT-AATAGATTTGCAAGGAAATA
1 TATATACATAAATAGATTT-AAAAGAAA-A
76851503 TATATACATAAATAGATTTAAAAGAAAA
1 TATATACATAAATAGATTTAAAAGAAAA
76851531 TATATACATAAA
1 TATATACATAAA
76851543 ACAATATGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 13 0.35
29 15 0.41
30 9 0.24
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (28 bp):
TATATACATAAATAGATTTAAAAGAAAA
Found at i:76854019 original size:29 final size:30
Alignment explanation
Indices: 76853987--76854054 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
76853977 AAGTGCTTCG
76853987 ATAAGGGCCAAAAC-TTTGAGA-GTGCTCAA
1 ATAAGGGCCAAAACTTTTGA-ACGTGCTCAA
* *
76854016 ATAAGAGCCAAACCTTTTTGAACGTGCTCAA
1 ATAAGGGCCAAAAC-TTTTGAACGTGCTCAA
76854047 ATAAGGGC
1 ATAAGGGC
76854055 TTCTCAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 12 0.36
30 1 0.03
31 20 0.61
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (30 bp):
ATAAGGGCCAAAACTTTTGAACGTGCTCAA
Found at i:76857853 original size:17 final size:17
Alignment explanation
Indices: 76857809--76857856 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
76857799 TTTTATGAAT
76857809 TTTTTATAATTTTTTTG
1 TTTTTATAATTTTTTTG
***
76857826 -AAATATGAATTTTTTTG
1 TTTTTAT-AATTTTTTTG
76857843 TTTTTATAATTTTT
1 TTTTTATAATTTTT
76857857 AAATTATTTG
Statistics
Matches: 23, Mismatches: 6, Indels: 4
0.70 0.18 0.12
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
TTTTTATAATTTTTTTG
Found at i:76858861 original size:15 final size:14
Alignment explanation
Indices: 76858841--76858870 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76858831 ATTAAAAATA
76858841 TTTTTAATAATTAAT
1 TTTTTAA-AATTAAT
76858856 TTTTTAAAATTAAT
1 TTTTTAAAATTAAT
76858870 T
1 T
76858871 AATTATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTTAAAATTAAT
Found at i:76860875 original size:17 final size:17
Alignment explanation
Indices: 76860853--76860886 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
76860843 ATATTACAAA
76860853 ATCCAATCTTCTAAGAT
1 ATCCAATCTTCTAAGAT
76860870 ATCCAATCTTCTAAGAT
1 ATCCAATCTTCTAAGAT
76860887 TAGTTTCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (17 bp):
ATCCAATCTTCTAAGAT
Found at i:76863346 original size:258 final size:256
Alignment explanation
Indices: 76862863--76863377 Score: 649
Period size: 258 Copynumber: 2.0 Consensus size: 256
76862853 AAAATTTCAA
* * * * *
76862863 ATTTATGTGAGAATTGATATGTATCCACAAGAAATAAATTATTAGCTTTGAGAACCCAATAATTC
1 ATTTATGTAAGAATTGACATGTATACACAAGAAATAAATTATTAGCTTTAAGAACCCAATAACTC
* * * *
76862928 TAATGGTGCAGTTGGATTTCAATGTTCCTCTAGTGCTACACATTTAGACCACTTTATTGCCCGAT
66 TAAAGGTGCAGTTGGATTTCAATGTTCCTCTAGTGATACACATTCAGACAACTTTATTGCCCGAT
** * * *
76862993 TGTGTTGTTGCCAACTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTGTCACACTAG
131 CATGTTGCT-CAAACTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTATCACACTAG
* * *
76863058 ATTTGCTTTCTTTTAGTTTGTTTATTTTTTCCTT-TCGTAAGGTTTCACCAACGATAATTGATT
195 ATTTACTTTCTTTTAGTTGGTTTATTTTTT-CTTCT-GTAAGGTTTCACCAACGACAATTGATT
* * **
76863121 ATTTATGTAAGAATTGACATGTATACACAAGTATTTGATTATTAGCTTTAAGAACCCAATAACTC
1 ATTTATGTAAGAATTGACATGTATACACAAGAAATAAATTATTAGCTTTAAGAACCCAATAACTC
* * * * **
76863186 TAAAGGTGCAGTTGTATTTCAATGTTCTTTTAGTGATGCACATTCAGGGAACTTTATTGCCCGAT
66 TAAAGGTGCAGTTGGATTTCAATGTTCCTCTAGTGATACACATTCAGACAACTTTATTGCCCGAT
* * * *
76863251 CATGTTGCT-AAAGCTATTTGGCTTGCAAGCTTTAATGTATTCACACTCCTATTTATCACACT-G
131 CATGTTGCTCAAA-CTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTATCACACTAG
* * *
76863314 AATTTACTTTTTTTTAGTTGGTATTTTTTTTTCTTCTGTAAGGTTTCATCAACGACAATTGATT
195 -ATTTACTTTCTTTTAGTTGGT-TTATTTTTTCTTCTGTAAGGTTTCACCAACGACAATTGATT
76863378 TGTTTCTACC
Statistics
Matches: 219, Mismatches: 34, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
256 3 0.01
257 90 0.41
258 126 0.58
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (256 bp):
ATTTATGTAAGAATTGACATGTATACACAAGAAATAAATTATTAGCTTTAAGAACCCAATAACTC
TAAAGGTGCAGTTGGATTTCAATGTTCCTCTAGTGATACACATTCAGACAACTTTATTGCCCGAT
CATGTTGCTCAAACTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTATCACACTAGA
TTTACTTTCTTTTAGTTGGTTTATTTTTTCTTCTGTAAGGTTTCACCAACGACAATTGATT
Found at i:76863703 original size:43 final size:43
Alignment explanation
Indices: 76863641--76863722 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
76863631 TGTGACAAAC
* *
76863641 ATATTGTCATATATGTAATGTCATGTCATCTTATTATTTTGAT
1 ATATTATCATATATATAATGTCATGTCATCTTATTATTTTGAT
* * * *
76863684 ATATTATCATATGTATAATGTCGTGTTATCTTGTTATTT
1 ATATTATCATATATATAATGTCATGTCATCTTATTATTT
76863723 CCACATAGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (43 bp):
ATATTATCATATATATAATGTCATGTCATCTTATTATTTTGAT
Found at i:76871870 original size:9 final size:9
Alignment explanation
Indices: 76871853--76871904 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
76871843 AACGTGTATG
*
76871853 TATTATATA
1 TATTTTATA
76871862 TATTTTATA
1 TATTTTATA
*
76871871 CATTTTATA
1 TATTTTATA
76871880 TA-TTTATA
1 TATTTTATA
76871888 TATATTTATTA
1 TAT-TTTA-TA
76871899 TATTTT
1 TATTTT
76871905 TATGTATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
8 8 0.22
9 17 0.46
10 7 0.19
11 5 0.14
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTATA
Found at i:76871929 original size:14 final size:14
Alignment explanation
Indices: 76871873--76871949 Score: 52
Period size: 14 Copynumber: 5.6 Consensus size: 14
76871863 ATTTTATACA
*
76871873 TTTTATATATTTAT
1 TTTTATATATATAT
* * *
76871887 ATATATTTATTATAT
1 TTTTATATA-TATAT
*
76871902 TTTTATGTATATAT
1 TTTTATATATATAT
76871916 TTTTA-ATATCATAT
1 TTTTATATAT-ATAT
* *
76871930 TATT-CATATAT-T
1 TTTTATATATATAT
76871942 TTTTATAT
1 TTTTATAT
76871950 TATGTAAATA
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
12 4 0.08
13 7 0.15
14 27 0.56
15 10 0.21
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (14 bp):
TTTTATATATATAT
Found at i:76871932 original size:25 final size:25
Alignment explanation
Indices: 76871904--76871989 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
76871894 TATTATATTT
76871904 TTATGTATATATTTTTAATATCATA
1 TTATGTATATATTTTTAATATCATA
76871929 TTAT-TCATATA-TTTT--T-T-ATA
1 TTATGT-ATATATTTTTAATATCATA
* * *
76871949 TTATGTAAATATTTTCAATA-CTACA
1 TTATGTATATATTTTTAATATC-ATA
76871974 TTATGTATATATTTTT
1 TTATGTATATATTTTT
76871990 GTCTATAATG
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
20 11 0.23
21 5 0.10
22 1 0.02
23 1 0.02
24 5 0.10
25 25 0.52
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (25 bp):
TTATGTATATATTTTTAATATCATA
Found at i:76871977 original size:45 final size:45
Alignment explanation
Indices: 76871886--76871989 Score: 113
Period size: 45 Copynumber: 2.2 Consensus size: 45
76871876 TATATATTTA
* * * *
76871886 TATATATTTATTATATTTTTATGTATATATTTTTAATATCATATTAT-
1 TATATATTT-TT-TA-TATTATGTAAATATTTTCAATATCACATTATG
76871933 TCATATATTTTTTATATTATGTAAATATTTTCAATA-CTACATTATG
1 T-ATATATTTTTTATATTATGTAAATATTTTCAATATC-ACATTATG
76871979 TATATATTTTT
1 TATATATTTTT
76871990 GTCTATAATG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
44 1 0.02
45 35 0.70
46 3 0.06
47 3 0.06
48 8 0.16
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.59
Consensus pattern (45 bp):
TATATATTTTTTATATTATGTAAATATTTTCAATATCACATTATG
Found at i:76872268 original size:26 final size:26
Alignment explanation
Indices: 76872238--76872289 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76872228 ATTATGTATA
*
76872238 TATTTTTAATACTACATATACATTTT
1 TATTTCTAATACTACATATACATTTT
* * *
76872264 TATTTCTATTACTACGTATATATTTT
1 TATTTCTAATACTACATATACATTTT
76872290 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.56
Consensus pattern (26 bp):
TATTTCTAATACTACATATACATTTT
Found at i:76884542 original size:205 final size:205
Alignment explanation
Indices: 76884266--76884769 Score: 697
Period size: 205 Copynumber: 2.5 Consensus size: 205
76884256 CGGGGAGCAG
* * * * * * * *
76884266 ATCGAAGATATAGCTGATTTGGTTTTCACGTATTTACGATGAAGCAAATCCAATATGATTTGTCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTAATTACGTTGAAGCAAATCTAAGATGATTTGACA
* * *
76884331 TCTCTGTAGTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGCAGATACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAGACACATA
* * *
76884396 GCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTCTGGTATCCTTGTGCTT
131 GCAGATC-CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTCTAGCATCCTTGTGCTT
*
76884460 ATAAGGA-ACAA
195 ACAAGGAGA-AA
* ** *
76884471 ATCGAAGACATAGCTGGTTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTAATTACGTTGAAGCAAATCTAAGATGATTTGACA
* * * * * *
76884536 TCTCTGTATTGTCAAAGAACAAATCGAAATCTGGCATCTCCACTTCGATGGAGGGTAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAGACACATA
*
76884601 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTCTAGCATCCTTGTGCTTA
76884666 CAAGGAGAAA
196 CAAGGAGAAA
* * * * *
76884676 ATCGAAGACGTAGCTGATTTGGCTTTCACGTTATTAAGTTAAAGCAAATCTAAGATGATTTGATA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTAATTACGTTGAAGCAAATCTAAGATGATTTGACA
76884741 TCTCTGTATTGTCAGAGAACAAATCGAAG
66 TCTCTGTATTGTCAGAGAACAAATCGAAG
76884770 AAGCAGATTT
Statistics
Matches: 263, Mismatches: 34, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
204 1 0.00
205 261 0.99
206 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTAATTACGTTGAAGCAAATCTAAGATGATTTGACA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAGACACATA
GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTCTAGCATCCTTGTGCTTA
CAAGGAGAAA
Found at i:76884920 original size:45 final size:45
Alignment explanation
Indices: 76884863--76884948 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
76884853 GAAGAAGCAA
* *
76884863 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
1 ATTTGGCATCTCTGTATTAAACGGGGAGCAGATCAAAGATAACAG
*
76884908 ATTTGGCGTCTCTGTATTAAACGGGGAGCAGATCAAAGATA
1 ATTTGGCATCTCTGTATTAAACGGGGAGCAGATCAAAGATA
76884949 GTAGATATCG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAAACGGGGAGCAGATCAAAGATAACAG
Found at i:76886701 original size:9 final size:9
Alignment explanation
Indices: 76886684--76886735 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
76886674 AACGTGTATG
*
76886684 TATTATATA
1 TATTTTATA
76886693 TATTTTATA
1 TATTTTATA
*
76886702 CATTTTATA
1 TATTTTATA
*
76886711 TATTATATA
1 TATTTTATA
76886720 TATTTTATTA
1 TATTTTA-TA
76886730 TATTTT
1 TATTTT
76886736 TATGTATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
9 29 0.78
10 8 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTATA
Found at i:76886715 original size:27 final size:27
Alignment explanation
Indices: 76886684--76886751 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
76886674 AACGTGTATG
76886684 TATTATATATATTTTA-TACATTTTATA
1 TATTATATATATTTTATTACATTTT-TA
*
76886711 TATTATATATATTTTATTATATTTTTA
1 TATTATATATATTTTATTACATTTTTA
*
76886738 T-GTATATAT-TTTTA
1 TATTATATATATTTTA
76886752 ATATCATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 5 0.13
26 7 0.18
27 19 0.50
28 7 0.18
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (27 bp):
TATTATATATATTTTATTACATTTTTA
Found at i:76886743 original size:12 final size:12
Alignment explanation
Indices: 76886707--76886774 Score: 61
Period size: 11 Copynumber: 5.7 Consensus size: 12
76886697 TTATACATTT
*
76886707 TATATATTA-TA
1 TATATTTTATTA
76886718 TATATTTTATTA
1 TATATTTTATTA
76886730 TAT-TTTTATGTA
1 TATATTTTAT-TA
*
76886742 TATATTTT-TAA
1 TATATTTTATTA
*
76886753 TATCATATTATTCA
1 TAT-ATTTTATT-A
76886767 TATATTTT
1 TATATTTT
76886775 TATATTATGT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
11 18 0.39
12 15 0.33
13 9 0.20
14 4 0.09
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:76886763 original size:25 final size:25
Alignment explanation
Indices: 76886735--76886819 Score: 69
Period size: 25 Copynumber: 3.6 Consensus size: 25
76886725 TATTATATTT
76886735 TTATGTATATATTTTTAATATCATA
1 TTATGTATATATTTTTAATATCATA
76886760 TTAT-TCATATA--TTT--T-T-ATA
1 TTATGT-ATATATTTTTAATATCATA
* * *
76886779 TTATGTAAATATTTTCAATA-CTACA
1 TTATGTATATATTTTTAATATC-ATA
76886804 TTATGTATATATTTTT
1 TTATGTATATATTTTT
76886820 GTCTATATGT
Statistics
Matches: 46, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
19 11 0.24
20 2 0.04
21 3 0.07
23 4 0.09
24 1 0.02
25 25 0.54
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAATATCATA
Found at i:76886777 original size:14 final size:13
Alignment explanation
Indices: 76886684--76886777 Score: 58
Period size: 14 Copynumber: 7.2 Consensus size: 13
76886674 AACGTGTATG
76886684 TATTATATATATTT
1 TATTATATAT-TTT
*
76886698 TA-TACAT-TTTAT
1 TATTATATATTT-T
76886710 ATATTATATATATTT
1 -TATTATATAT-TTT
76886725 TA-T-TATATTTT
1 TATTATATATTTT
76886736 TATGTATATATTTT
1 TAT-TATATATTTT
*
76886750 TA--ATATCA-TAT
1 TATTATAT-ATTTT
76886761 TATTCATATATTTT
1 TATT-ATATATTTT
76886775 TAT
1 TAT
76886778 ATTATGTAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 26
0.68 0.04 0.28
Matches are distributed among these distances:
11 15 0.24
12 8 0.13
13 9 0.14
14 27 0.43
15 2 0.03
16 2 0.03
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (13 bp):
TATTATATATTTT
Found at i:76886793 original size:44 final size:44
Alignment explanation
Indices: 76886735--76886819 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
76886725 TATTATATTT
* * *
76886735 TTATGTATATATTTTTAATA-TCATATTAT-TCATATATTTTTATA
1 TTATGTAAATATTTTCAATACT-ACATTATGT-ATATATTTTTATA
76886779 TTATGTAAATATTTTCAATACTACATTATGTATATATTTTT
1 TTATGTAAATATTTTCAATACTACATTATGTATATATTTTT
76886820 GTCTATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (44 bp):
TTATGTAAATATTTTCAATACTACATTATGTATATATTTTTATA
Found at i:76887048 original size:12 final size:12
Alignment explanation
Indices: 76887031--76887056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76887021 TGTGTTTCAA
76887031 TATTATTATTTC
1 TATTATTATTTC
76887043 TATTATTATTTC
1 TATTATTATTTC
76887055 TA
1 TA
76887057 GTATGTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTATTATTTC
Found at i:76887107 original size:26 final size:26
Alignment explanation
Indices: 76887077--76887128 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76887067 ATTATGTATA
*
76887077 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
76887103 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
76887129 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:76888805 original size:29 final size:30
Alignment explanation
Indices: 76888746--76888805 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
76888736 CTATATATAT
* * **
76888746 TTAGTTTAAGATTTAATTAAGTTAATTTAA
1 TTAGTTTAAGACTTAATTAAATTAAACTAA
76888776 TTAGTTTAAG-CTTAATTAAATTAAACTAA
1 TTAGTTTAAGACTTAATTAAATTAAACTAA
76888805 T
1 T
76888806 CATACGTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (30 bp):
TTAGTTTAAGACTTAATTAAATTAAACTAA
Found at i:76896302 original size:20 final size:21
Alignment explanation
Indices: 76896271--76896309 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
76896261 TAAAGATAAT
*
76896271 TTTTTTATTTTTCTTAAAAAC
1 TTTTTTATTTTTCGTAAAAAC
76896292 TTTTTTA-TTTTCGTAAAA
1 TTTTTTATTTTTCGTAAAA
76896310 TACAAGCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTTTATTTTTCGTAAAAAC
Found at i:76896528 original size:18 final size:18
Alignment explanation
Indices: 76896459--76896526 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
76896449 TTAAATGATA
*
76896459 AAAAATATTTTTAAAATT
1 AAAAATAATTTTAAAATT
** *
76896477 AAATTTAATTATAAAATT
1 AAAAATAATTTTAAAATT
* * *
76896495 ATATA-AATTATTAATATT
1 AAAAATAATT-TTAAAATT
76896513 AAAAATAATTTTAA
1 AAAAATAATTTTAA
76896527 TAAATTTATT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
17 4 0.11
18 30 0.79
19 4 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAAATAATTTTAAAATT
Found at i:76899856 original size:88 final size:88
Alignment explanation
Indices: 76899751--76899928 Score: 302
Period size: 88 Copynumber: 2.0 Consensus size: 88
76899741 AGTTTTTTTC
* *
76899751 TTTTTATACAATAAAGTACTTAAATCTGATTTAATAGTTTAAATTGATTCAAATAAATCATTTAC
1 TTTTTATACAATAAAGTACCTAAATCTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
76899816 GGTAAGTGACCAAAAAACTTAAT
66 GGTAAGTGACCAAAAAACTTAAT
* *
76899839 TTTTTATACAATTAAGTACCTAAATTTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
1 TTTTTATACAATAAAGTACCTAAATCTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
* *
76899904 TGTAAGTGATCAAAAAACTTAAT
66 GGTAAGTGACCAAAAAACTTAAT
76899927 TT
1 TT
76899929 AGATACCAAT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (88 bp):
TTTTTATACAATAAAGTACCTAAATCTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
GGTAAGTGACCAAAAAACTTAAT
Found at i:76899972 original size:88 final size:88
Alignment explanation
Indices: 76899789--76899962 Score: 208
Period size: 88 Copynumber: 2.0 Consensus size: 88
76899779 ATTTAATAGT
**
76899789 TTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTAATTTTTTATACAATTAA
1 TTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTAATTTTAGATACAATTAA
* ** ** * *
76899854 GTACCTAAATTTGATTTAAAAGT
66 CTACAAAAATTAAATTCAAAAGC
* *
76899877 TTAAATTGATTCAAATAAATCATTTACTGTAAGTGATCAAAAAACTTAA-TTTAGATACCAATTT
1 TTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTAATTTTAGATA-CAA-TT
76899941 GAACTA-AAAAATTAAATTCAAA
64 -AACTACAAAAATTAAATTCAAA
76899963 TACTTAATTG
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
87 6 0.08
88 50 0.68
89 13 0.18
90 4 0.05
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (88 bp):
TTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTAATTTTAGATACAATTAA
CTACAAAAATTAAATTCAAAAGC
Found at i:76907048 original size:2 final size:2
Alignment explanation
Indices: 76907041--76907066 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76907031 TCTTCCAACA
76907041 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76907067 GCTACTAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76919443 original size:42 final size:42
Alignment explanation
Indices: 76919297--76919452 Score: 136
Period size: 42 Copynumber: 3.7 Consensus size: 42
76919287 GCTAGAAAGC
** * *
76919297 TGAACAGAAG-TACATAAGTCCTAAATAGAAACCCATAAGGGT
1 TGAACAGAAGCT-CATAAGAGCTGAACAGAAACCCATAAGGGT
* * *
76919339 TGAGCGGAAGCTCATAAGAGCTGAACAAAAACCCATAAGGGT
1 TGAACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGT
* * * ** * *
76919381 TAAAAAGAAGCTCAAAAGAGCTGAATGGAAACTCATAGGGGT
1 TGAACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGT
* * *
76919423 TGAACAGAAGCTCGTGAGAGCTAAAC-GAAA
1 TGAACAGAAGCTCATAAGAGCTGAACAGAAA
76919453 AGTAAACACG
Statistics
Matches: 89, Mismatches: 24, Indels: 3
0.77 0.21 0.03
Matches are distributed among these distances:
41 4 0.04
42 84 0.94
43 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGT
Found at i:76926514 original size:41 final size:41
Alignment explanation
Indices: 76926431--76926513 Score: 132
Period size: 40 Copynumber: 2.0 Consensus size: 41
76926421 GAAAAAAAGG
* *
76926431 TTCATTTTTACCGATTTCAAAAAAAAAACTAGCTCCCTTTT
1 TTCATTTTTACCCATTTCAAAAAAAAAACCAGCTCCCTTTT
*
76926472 TTCATTTTTACCCATTT-AAAAAAAAATCCAGCTCCCTTTT
1 TTCATTTTTACCCATTTCAAAAAAAAAACCAGCTCCCTTTT
76926512 TT
1 TT
76926514 TTTCTCTGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 23 0.59
41 16 0.41
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.41
Consensus pattern (41 bp):
TTCATTTTTACCCATTTCAAAAAAAAAACCAGCTCCCTTTT
Found at i:76926876 original size:17 final size:17
Alignment explanation
Indices: 76926851--76926886 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
76926841 TTTTGTGTTC
*
76926851 TGTTTTTTTATTTTTTTG
1 TGTTTTTTT-TATTTTTG
76926869 TGTTTTTTTTATTTTTG
1 TGTTTTTTTTATTTTTG
76926886 T
1 T
76926887 TTCAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.83
Consensus pattern (17 bp):
TGTTTTTTTTATTTTTG
Found at i:76927512 original size:44 final size:44
Alignment explanation
Indices: 76927464--76928031 Score: 274
Period size: 44 Copynumber: 12.5 Consensus size: 44
76927454 TTGTTACTCC
*
76927464 AATCTACTCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT
* * * * * *
76927508 AATCTGCTCCACTGTAACTTCAGGGAGATGAGACTCGTATCTTC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT
* * * * *
76927552 AATCTACTCTACTACAACTTCAGGGAGATGAGATTTGTAACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT
* * ** * *
76927596 AATCTACTCCACTGCAATTTTAAAGAGATAAGATTTGTAACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT
* *
76927640 AATCTACTCCACTGCAA----A-AGAGATAAGATTTGTAG-TGTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCT-TT
* * * * * **
76927679 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTGC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTG-TAGCTTT
* * * *
76927724 AATCTGCTCCATTGTAACTTCAAGGAGATAAGATTTGTAGCTTGTAGCTTT
1 AATCTACTCCACTGCAACTTCAGGGAGAT-A-A---G-A-CTTGTAGCTTT
* * * * *
76927775 AGTATAGTCCACTGCAACTTTAGGGAGATAAGACTTGTTATGGTAGATTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGAC----T-T-GTAGCTTT
* * * * * *
76927825 AATCCGAC-CTACTGCAACTTCAGAGGTG-TATGACTTATTG-TTT
1 AAT-CTACTCCACTGCAACTTCAG-GGAGATAAGACTTGTAGCTTT
* * *
76927868 CAATCTACTCCACTTCAACTTCAGGGAGATAAGATTTGTAATTTGTAGTTTT
1 -AATCTACTCCACTGCAACTTCAGGGAGAT-A-A---G--ACTTGTAGCTTT
** * ** * *
76927920 AATCTGTTCCACTACAACTTTCAAAGAAATAAGATTTGTAGCTTT
1 AATCTACTCCACTGCAAC-TTCAGGGAGATAAGACTTGTAGCTTT
* * * * * *
76927965 AATCTGA-TCTATTGCAACTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCT-ACTCCACTGCAACTTCAGGGAGATAAGACTTG-TAGCTTT
* *
76928010 AATTTTCTCCACTGCAACTTCA
1 AATCTACTCCACTGCAACTTCA
76928032 AAAAGATAAG
Statistics
Matches: 404, Mismatches: 82, Indels: 75
0.72 0.15 0.13
Matches are distributed among these distances:
38 1 0.00
39 33 0.08
40 1 0.00
43 10 0.02
44 179 0.44
45 75 0.19
46 4 0.01
47 2 0.00
48 1 0.00
49 3 0.01
50 30 0.07
51 51 0.13
52 14 0.03
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (44 bp):
AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT
Found at i:76927660 original size:39 final size:39
Alignment explanation
Indices: 76927576--76927695 Score: 143
Period size: 39 Copynumber: 2.9 Consensus size: 39
76927566 CAACTTCAGG
*
76927576 GAGATGAGATTTGTAACTTTAATCTACTCCACTGCAATTTTAAA
1 GAGATAAGATTTGTAACTTTAATCTACTCCACTGC-A----AAA
76927620 GAGATAAGATTTGTAACTTTAATCTACTCCACTGCAAAA
1 GAGATAAGATTTGTAACTTTAATCTACTCCACTGCAAAA
* * *
76927659 GAGATAAGATTTGT-AGTGTTAATCTGCTCTACTGCAA
1 GAGATAAGATTTGTAACT-TTAATCTACTCCACTGCAA
76927696 CTTCAGAGAG
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
38 2 0.03
39 34 0.48
43 1 0.01
44 34 0.48
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (39 bp):
GAGATAAGATTTGTAACTTTAATCTACTCCACTGCAAAA
Found at i:76927983 original size:45 final size:44
Alignment explanation
Indices: 76927908--76928047 Score: 129
Period size: 45 Copynumber: 3.1 Consensus size: 44
76927898 AAGATTTGTA
* *
76927908 ATTTGTAGTTTTAATCTGTTCCACTACAACTTTCAAAGAAATAAG
1 ATTTGTAGCTTTAATCTGATCCACTACAAC-TTCAAAGAAATAAG
* * * * *
76927953 ATTTGTAGCTTTAATCTGATCTATTGCAACTTCAGAGAGATAAG
1 ATTTGTAGCTTTAATCTGATCCACTACAACTTCAAAGAAATAAG
* * * ** *
76927997 ATTTGCTATCTTCAATTTTCTCCACTGCAACTTCAAA-AAGATAAG
1 ATTTG-TAGCTTTAATCTGATCCACTACAACTTCAAAGAA-ATAAG
76928042 ATTTGT
1 ATTTGT
76928048 GATAAGATTT
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
44 19 0.25
45 58 0.75
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (44 bp):
ATTTGTAGCTTTAATCTGATCCACTACAACTTCAAAGAAATAAG
Found at i:76928053 original size:12 final size:12
Alignment explanation
Indices: 76928036--76928061 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76928026 ACTTCAAAAA
76928036 GATAAGATTTGT
1 GATAAGATTTGT
76928048 GATAAGATTTGT
1 GATAAGATTTGT
76928060 GA
1 GA
76928062 CTTCAATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (12 bp):
GATAAGATTTGT
Found at i:76948800 original size:24 final size:22
Alignment explanation
Indices: 76948773--76948819 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
76948763 TTCAATAACA
*
76948773 ATCATTTAATCATTATTATTCAGT
1 ATCAGTTAATCA-T-TTATTCAGT
*
76948797 ATCAGTTATTCATTTATTCAGT
1 ATCAGTTAATCATTTATTCAGT
76948819 A
1 A
76948820 ACAATCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.48
23 1 0.05
24 10 0.48
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.49
Consensus pattern (22 bp):
ATCAGTTAATCATTTATTCAGT
Found at i:76949009 original size:6 final size:6
Alignment explanation
Indices: 76948965--76949007 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
76948955 GAATATACCA
* * *
76948965 TAACGG TAACAA TAACAG TAACAG TAACAG TAACAG TCACAG T
1 TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG T
76949008 CAGGTACAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (6 bp):
TAACAG
Found at i:76952648 original size:11 final size:11
Alignment explanation
Indices: 76952634--76952658 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76952624 AAAATAGAGT
76952634 AAAAAAATCTA
1 AAAAAAATCTA
76952645 AAAAAAATCTA
1 AAAAAAATCTA
76952656 AAA
1 AAA
76952659 GCCATTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAATCTA
Found at i:76953986 original size:88 final size:88
Alignment explanation
Indices: 76953878--76954043 Score: 251
Period size: 88 Copynumber: 1.9 Consensus size: 88
76953868 GTAATTTTCA
* * * * *
76953878 GCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTGCTCCACTACTGCTTAG
1 GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTCTTCGATTCGCTCCACTAATGCTTAG
*
76953943 GGAGACAAGATCTACAATCTTCG
66 GAAGACAAGATCTACAATCTTCG
**
76953966 GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCATTGTCTTCGATTCGCTCCACTAATGCTTAG
1 GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTCTTCGATTCGCTCCACTAATGCTTAG
*
76954031 GAAGATAAGATCT
66 GAAGACAAGATCT
76954044 GTGAATTCAC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 69 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (88 bp):
GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTCTTCGATTCGCTCCACTAATGCTTAG
GAAGACAAGATCTACAATCTTCG
Found at i:76954874 original size:11 final size:10
Alignment explanation
Indices: 76954854--76954883 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
76954844 TCATCTTAGC
*
76954854 TTTTCCTTTT
1 TTTTTCTTTT
76954864 TTTTTCTTTT
1 TTTTTCTTTT
76954874 TTTTTCTTTT
1 TTTTTCTTTT
76954884 GGTTTCAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:76954945 original size:53 final size:54
Alignment explanation
Indices: 76954873--76954984 Score: 172
Period size: 53 Copynumber: 2.1 Consensus size: 54
76954863 TTTTTTCTTT
* * *
76954873 TTTTTTCTTTTGGTTTCAAAGCGCCCTTTGCGGATTTTCACCTTGGCCTTTCCA
1 TTTTTTCTTTGGGTCTCAAAGCGCCCTTTGCGGATTTTCACCTTGGCCTCTCCA
* *
76954927 TTTTTT-TTTGGGTCTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCC
1 TTTTTTCTTTGGGTCTCAAAGCGCCCTTTGCGGATTTTCACCTTGGCCTCTCCA
76954980 TTTTT
1 TTTTT
76954985 AGGTAAAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 47 0.89
54 6 0.11
ACGTcount: A:0.09, C:0.27, G:0.18, T:0.46
Consensus pattern (54 bp):
TTTTTTCTTTGGGTCTCAAAGCGCCCTTTGCGGATTTTCACCTTGGCCTCTCCA
Found at i:76962902 original size:21 final size:21
Alignment explanation
Indices: 76962878--76962917 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
76962868 CTTTAATTTC
76962878 TTTTGTGTTCTGTTTTTTTAT
1 TTTTGTGTTCTGTTTTTTTAT
* * *
76962899 TTTTTTTTTGTGTTTTTTT
1 TTTTGTGTTCTGTTTTTTT
76962918 CTTTGTTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.03, C:0.03, G:0.12, T:0.82
Consensus pattern (21 bp):
TTTTGTGTTCTGTTTTTTTAT
Found at i:76964050 original size:29 final size:28
Alignment explanation
Indices: 76964009--76964066 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
76963999 TTAAGTTTAA
* * *
76964009 TATTTTTTTTCTAATATGGTACTTGTAT
1 TATTTTTTGTCTAATATGATACATGTAT
*
76964037 TATTTTTTGGTCTAATCTGATACATGTAT
1 TATTTTTT-GTCTAATATGATACATGTAT
76964066 T
1 T
76964067 TAACAAAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.22, C:0.09, G:0.12, T:0.57
Consensus pattern (28 bp):
TATTTTTTGTCTAATATGATACATGTAT
Found at i:76969191 original size:22 final size:20
Alignment explanation
Indices: 76969166--76969220 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 20
76969156 GTGATGTATT
76969166 TTTTTAAATTTGAAATTTTTTA
1 TTTTTAAATTT--AATTTTTTA
*
76969188 TTTTTAGAAATTTATTTTTTTA
1 TTTTT--AAATTTAATTTTTTA
76969210 TTTTTAAATTT
1 TTTTTAAATTT
76969221 CAAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 6 0.20
22 18 0.60
24 6 0.20
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTTAAATTTAATTTTTTA
Found at i:76969209 original size:16 final size:17
Alignment explanation
Indices: 76969177--76969209 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76969167 TTTTAAATTT
*
76969177 GAAATTTTTTATTTTTA
1 GAAATTTATTATTTTTA
76969194 GAAATTTATT-TTTTTA
1 GAAATTTATTATTTTTA
76969210 TTTTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (17 bp):
GAAATTTATTATTTTTA
Found at i:76971027 original size:27 final size:25
Alignment explanation
Indices: 76970939--76971029 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 25
76970929 TGATTTAGGA
76970939 TTCAAGGTTTGAGTTTTGGTGTTTAGGG
1 TTCAAGGTTTGAG-TTTGG-GTTT-GGG
*
76970967 TTCAA-GTTTAGAGTTTGAGTTTGAGG
1 TTCAAGGTTT-GAGTTTGGGTTTG-GG
*
76970993 TTCGAGGTTTGGAGTTTAGGGTTTGGG
1 TTCAAGGTTT-GAGTTT-GGGTTTGGG
*
76971020 GTCAAGGTTT
1 TTCAAGGTTT
76971030 AAGGTTAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
25 1 0.02
26 10 0.19
27 28 0.53
28 14 0.26
ACGTcount: A:0.16, C:0.04, G:0.36, T:0.43
Consensus pattern (25 bp):
TTCAAGGTTTGAGTTTGGGTTTGGG
Found at i:76971303 original size:14 final size:15
Alignment explanation
Indices: 76971278--76971310 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
76971268 AAAAAGGGAA
*
76971278 ATATATTAAAATTTT
1 ATATATTAAAATGTT
76971293 ATATA-TAAAATGTT
1 ATATATTAAAATGTT
76971307 ATAT
1 ATAT
76971311 GAGGATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (15 bp):
ATATATTAAAATGTT
Found at i:76974387 original size:88 final size:88
Alignment explanation
Indices: 76974238--76974413 Score: 298
Period size: 88 Copynumber: 2.0 Consensus size: 88
76974228 AAACTCACGT
* * * * *
76974238 CCTCTTGCATTATCAATGATACCGTTATTAGCCAAGCTAAGACTTAGTCGACCCTGAATATATCT
1 CCTCTTGCACTATCAATAATACCGTTATTAGCCAAGCTAAGACTCAATCAACCCTGAATATATCT
76974303 TTCTTCGTATTTATATATTCATA
66 TTCTTCGTATTTATATATTCATA
*
76974326 CCTCTTGTACTATCAATAATACCGTTATTAGCCAAGCTAAGACTCAATCAACCCTGAATATATCT
1 CCTCTTGCACTATCAATAATACCGTTATTAGCCAAGCTAAGACTCAATCAACCCTGAATATATCT
76974391 TTCTTCGTATTTATATATTCATA
66 TTCTTCGTATTTATATATTCATA
76974414 TCCATGATGA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (88 bp):
CCTCTTGCACTATCAATAATACCGTTATTAGCCAAGCTAAGACTCAATCAACCCTGAATATATCT
TTCTTCGTATTTATATATTCATA
Found at i:76977865 original size:45 final size:45
Alignment explanation
Indices: 76977801--76977890 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
76977791 TAATGCTTTA
76977801 TTTTGATAGATTTAGAGGTAGTGATGAATGATTGGTTCAAAAAGG
1 TTTTGATAGATTTAGAGGTAGTGATGAATGATTGGTTCAAAAAGG
*
76977846 TTTTGATAGATTTAGAGGTAGTGATGGATGATTGGTTCAAAAAGG
1 TTTTGATAGATTTAGAGGTAGTGATGAATGATTGGTTCAAAAAGG
76977891 AAAACAAGGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (45 bp):
TTTTGATAGATTTAGAGGTAGTGATGAATGATTGGTTCAAAAAGG
Found at i:76989336 original size:25 final size:24
Alignment explanation
Indices: 76989303--76989389 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 24
76989293 CGAGCATGTA
*
76989303 AACGAGAAGCTCTTTCGAGCCGTAT
1 AACGGGAAGCTCTTT-GAGCCGTAT
* * **
76989328 AAGGGGAAGCTCATGTGAGTTGTAT
1 AACGGGAAGCTC-TTTGAGCCGTAT
* *
76989353 AACGGGAAGCTCTTGTGAGCCATTT
1 AACGGGAAGCTCTT-TGAGCCGTAT
*
76989378 ATCGGGAAGCTC
1 AACGGGAAGCTC
76989390 AAGAGAGCCA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
24 1 0.02
25 45 0.94
26 2 0.04
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (24 bp):
AACGGGAAGCTCTTTGAGCCGTAT
Found at i:76989397 original size:25 final size:25
Alignment explanation
Indices: 76989355--76989472 Score: 112
Period size: 25 Copynumber: 4.7 Consensus size: 25
76989345 AGTTGTATAA
* * **
76989355 CGGGAAGCTCTTGTGAGCCATTTAT
1 CGGGAAGCTCATGAGAGCCAAATAT
*
76989380 CGGGAAGCTCAAGAGAGCCAAATAT
1 CGGGAAGCTCATGAGAGCCAAATAT
*
76989405 CGGGAAGCTTATGAGAGCCAAATAT
1 CGGGAAGCTCATGAGAGCCAAATAT
* * * * *
76989430 CAGGATGCTTATAAGAGCTAAATAAT
1 CGGGAAGCTCATGAGAGCCAAAT-AT
*
76989456 -GGGAAGCTCGTGAGAGC
1 CGGGAAGCTCATGAGAGC
76989473 TGTGGTGTAT
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
25 74 0.97
26 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (25 bp):
CGGGAAGCTCATGAGAGCCAAATAT
Found at i:76995111 original size:35 final size:35
Alignment explanation
Indices: 76995066--76995137 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
76995056 ATTCAGTTTA
76995066 ACCTTTCCTTTAATTACTCCTATTAATAGATTCAG
1 ACCTTTCCTTTAATTACTCCTATTAATAGATTCAG
*
76995101 ACCTTTCCTTTAATTACTCTTATTAATAGATTCAG
1 ACCTTTCCTTTAATTACTCCTATTAATAGATTCAG
76995136 AC
1 AC
76995138 TTTGGCGGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.43
Consensus pattern (35 bp):
ACCTTTCCTTTAATTACTCCTATTAATAGATTCAG
Found at i:76996364 original size:18 final size:18
Alignment explanation
Indices: 76996343--76996377 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76996333 ATAATAATTA
*
76996343 TTTATTTAATAAAAATAT
1 TTTACTTAATAAAAATAT
*
76996361 TTTACTTAATAACAATA
1 TTTACTTAATAAAAATA
76996378 AATAAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTACTTAATAAAAATAT
Found at i:77001927 original size:16 final size:17
Alignment explanation
Indices: 77001894--77001927 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
77001884 TATTCAAATA
*
77001894 ATTATCAAATATATTAT
1 ATTATAAAATATATTAT
77001911 ATTATAAAATA-ATTAT
1 ATTATAAAATATATTAT
77001927 A
1 A
77001928 AAGTCCCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATAAAATATATTAT
Found at i:77011912 original size:50 final size:50
Alignment explanation
Indices: 77011830--77011939 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 50
77011820 TTCATATTCA
* *
77011830 GGAATGCTCATATGAGCATGTAAACGGAAAGCTCTTTCGATCCATATAATG
1 GGAA-GCTCATATGAGCATGTAAACGGAAAGCTCTTGCGAGCCATATAATG
* * *
77011881 GGAAGCTCATGTGAGC-TGTATAACTGG-AAGCTCTTGCGAGCCATTTATTG
1 GGAAGCTCATATGAGCATGTA-AAC-GGAAAGCTCTTGCGAGCCATATAATG
*
77011931 AGAAGCTCA
1 GGAAGCTCA
77011940 AGAGAGCCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
49 4 0.08
50 41 0.80
51 6 0.12
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (50 bp):
GGAAGCTCATATGAGCATGTAAACGGAAAGCTCTTGCGAGCCATATAATG
Found at i:77011969 original size:25 final size:25
Alignment explanation
Indices: 77011926--77011975 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
77011916 GCGAGCCATT
* *
77011926 TATTGAGAAGCTCAAGAGAGCCAAA
1 TATTGAGAAACTCAAGAGAGACAAA
**
77011951 TATTGAGAAACTCGTGAGAGACAAA
1 TATTGAGAAACTCAAGAGAGACAAA
77011976 ATCGGATGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (25 bp):
TATTGAGAAACTCAAGAGAGACAAA
Found at i:77012359 original size:21 final size:21
Alignment explanation
Indices: 77012335--77012376 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77012325 TGAATTTAAC
* *
77012335 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATACATAT
*
77012356 TCAATTCAATCCAATACATAT
1 TCAATTCAATACAATACATAT
77012377 CTTTCGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATACATAT
Found at i:77017463 original size:2 final size:2
Alignment explanation
Indices: 77017456--77017481 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
77017446 TTAGCTCTCA
77017456 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
77017482 TAATTTGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77019069 original size:23 final size:22
Alignment explanation
Indices: 77019035--77019094 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
77019025 AACTAAACTG
77019035 ATAAAATAATTTTAATTAATATA
1 ATAAAAT-ATTTTAATTAATATA
* * *
77019058 ATAATAATATTTAAATTACTCTA
1 ATAA-AATATTTTAATTAATATA
*
77019081 TTAAAATATTTTAA
1 ATAAAATATTTTAA
77019095 AATTTGCGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 9 0.29
23 19 0.61
24 3 0.10
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAAATATTTTAATTAATATA
Found at i:77022265 original size:21 final size:20
Alignment explanation
Indices: 77022207--77022270 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 20
77022197 ACAAAATTTA
* *
77022207 AATAAAATCTAATT-AATCC
1 AATAAAAACTAATTAAATGC
*
77022226 AATAAAAACT-ATAAAATGC
1 AATAAAAACTAATTAAATGC
77022245 AATAAAAACTAATCTAAATGC
1 AATAAAAACTAAT-TAAATGC
*
77022266 TATAA
1 AATAA
77022271 TTACCTCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 2 0.05
19 23 0.62
20 2 0.05
21 10 0.27
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (20 bp):
AATAAAAACTAATTAAATGC
Found at i:77035686 original size:560 final size:560
Alignment explanation
Indices: 77034627--77035746 Score: 2231
Period size: 560 Copynumber: 2.0 Consensus size: 560
77034617 AAGAGTTGGT
77034627 GTTGAATTTAAACTCTGATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGGGGATGCGA
1 GTTGAATTTAAACTCTGATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGGGGATGCGA
77034692 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAGAGGTACCTTTCTTGGCTGATCCCTTTCG
66 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAGAGGTACCTTTCTTGGCTGATCCCTTTCG
77034757 CTGTATGGCGTGCTCGTTTGGGTTGGGCGTCGGCTAAGAGTGCTTGGAGCGTGGATTAACTCCAG
131 CTGTATGGCGTGCTCGTTTGGGTTGGGCGTCGGCTAAGAGTGCTTGGAGCGTGGATTAACTCCAG
77034822 TCTCCTATCAGGTGTGTATTTCTTACTACTCTAGCTGTAGGATGGCTATTTCGGGCCGCGATGGG
196 TCTCCTATCAGGTGTGTATTTCTTACTACTCTAGCTGTAGGATGGCTATTTCGGGCCGCGATGGG
77034887 CCGAAAGGGGTCATGTGGGCCTAATGGGCCTACGTGCCCAATTGGATAAGTTGTTTGATTGTGTA
261 CCGAAAGGGGTCATGTGGGCCTAATGGGCCTACGTGCCCAATTGGATAAGTTGTTTGATTGTGTA
77034952 GTAAATATTGGGCTAAATTAGGTGAATCTAATATTTGTGGCTAGATTTGGGCTAAAAGGGCCACA
326 GTAAATATTGGGCTAAATTAGGTGAATCTAATATTTGTGGCTAGATTTGGGCTAAAAGGGCCACA
77035017 CGAGCGTGTGGGCCCATTTGGGCCGAGAATGGGCTTTAGGGCCATTAGTATTGTTATCCATGTTT
391 CGAGCGTGTGGGCCCATTTGGGCCGAGAATGGGCTTTAGGGCCATTAGTATTGTTATCCATGTTT
77035082 AGAATACTTTACTTTACTAATTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGA
456 AGAATACTTTACTTTACTAATTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGA
77035147 TTTACATAATTACCGTTTTACCCTCAATTTATAGAATTAC
521 TTTACATAATTACCGTTTTACCCTCAATTTATAGAATTAC
77035187 GTTGAATTTAAACTCTGATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGGGGATGCGA
1 GTTGAATTTAAACTCTGATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGGGGATGCGA
77035252 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAGAGGTACCTTTCTTGGCTGATCCCTTTCG
66 AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAGAGGTACCTTTCTTGGCTGATCCCTTTCG
77035317 CTGTATGGCGTGCTCGTTTGGGTTGGGCGTCGGCTAAGAGTGCTTGGAGCGTGGATTAACTCCAG
131 CTGTATGGCGTGCTCGTTTGGGTTGGGCGTCGGCTAAGAGTGCTTGGAGCGTGGATTAACTCCAG
77035382 TCTCCTATCAGGTGTGTATTTCTTACTACTCTAGCTGTAGGATGGCTATTTCGGGCCGCGATGGG
196 TCTCCTATCAGGTGTGTATTTCTTACTACTCTAGCTGTAGGATGGCTATTTCGGGCCGCGATGGG
77035447 CCGAAAGGGGTCATGTGGGCCTAATGGGCCTACGTGCCCAATTGGATAAGTTGTTTGATTGTGTA
261 CCGAAAGGGGTCATGTGGGCCTAATGGGCCTACGTGCCCAATTGGATAAGTTGTTTGATTGTGTA
77035512 GTAAATATTGGGCTAAATTAGGTGAATCTAATATTTGTGGCTAGATTTGGGCTAAAAGGGCCACA
326 GTAAATATTGGGCTAAATTAGGTGAATCTAATATTTGTGGCTAGATTTGGGCTAAAAGGGCCACA
77035577 CGAGCGTGTGGGCCCATTTGGGCCGAGAATGGGCTTTAGGGCCATTAGTATTGTTATCCATGTTT
391 CGAGCGTGTGGGCCCATTTGGGCCGAGAATGGGCTTTAGGGCCATTAGTATTGTTATCCATGTTT
*
77035642 AGAATATTTTACTTTACTAATTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGA
456 AGAATACTTTACTTTACTAATTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGA
77035707 TTTACATAATTACCGTTTTACCCTCAATTTATAGAATTAC
521 TTTACATAATTACCGTTTTACCCTCAATTTATAGAATTAC
77035747 CGTTTTACCC
Statistics
Matches: 559, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
560 559 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (560 bp):
GTTGAATTTAAACTCTGATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGGGGATGCGA
AGCTGGCTTTAAATAGAGAGAACCATGAGGAGAGTAGAGGTACCTTTCTTGGCTGATCCCTTTCG
CTGTATGGCGTGCTCGTTTGGGTTGGGCGTCGGCTAAGAGTGCTTGGAGCGTGGATTAACTCCAG
TCTCCTATCAGGTGTGTATTTCTTACTACTCTAGCTGTAGGATGGCTATTTCGGGCCGCGATGGG
CCGAAAGGGGTCATGTGGGCCTAATGGGCCTACGTGCCCAATTGGATAAGTTGTTTGATTGTGTA
GTAAATATTGGGCTAAATTAGGTGAATCTAATATTTGTGGCTAGATTTGGGCTAAAAGGGCCACA
CGAGCGTGTGGGCCCATTTGGGCCGAGAATGGGCTTTAGGGCCATTAGTATTGTTATCCATGTTT
AGAATACTTTACTTTACTAATTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGA
TTTACATAATTACCGTTTTACCCTCAATTTATAGAATTAC
Found at i:77035828 original size:27 final size:27
Alignment explanation
Indices: 77035698--77035828 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 27
77035688 ATTACCAAAG
* * *
77035698 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
77035725 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
77035752 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
** *
77035779 TACTATTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
77035806 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
77035829 AAAATACCCT
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:77035836 original size:27 final size:27
Alignment explanation
Indices: 77035806--77036024 Score: 185
Period size: 27 Copynumber: 8.1 Consensus size: 27
77035796 ATTACTGTTT
** *
77035806 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
77035833 TACCCTAGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
77035860 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
77035887 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
77035913 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
77035940 TACCC-CTAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
* * **
77035967 TACCACT-GGTTTGTGAAATTACTGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
** *
77035994 TATACTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
77036021 TACC
1 TACC
77036025 TTAATTTACA
Statistics
Matches: 155, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
26 23 0.15
27 131 0.85
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:77035846 original size:54 final size:54
Alignment explanation
Indices: 77035733--77035855 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 54
77035723 TTTACCCTCA
* * * *** * *
77035733 ATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACTATTG
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCATAG
* *
77035787 ATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTAG
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCATAG
* *
77035841 GTTTACAAAATTACC
1 ATTTACAGAATTACC
77035856 AAAATACCCT
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.40
Consensus pattern (54 bp):
ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCATAG
Found at i:77035853 original size:81 final size:81
Alignment explanation
Indices: 77035705--77035854 Score: 174
Period size: 81 Copynumber: 1.9 Consensus size: 81
77035695 AAGTACCCCC
* * * **** * * *
77035705 GATTTACATAATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTAGATTTACAAAA
77035770 TTACTATTTTACTATT
66 TTACTATTTTACTATT
* * * *
77035786 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTAGGTTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTAGATTTACAAAA
77035851 TTAC
66 TTAC
77035855 CAAAATACCC
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 55 1.00
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTAGATTTACAAAA
TTACTATTTTACTATT
Found at i:77035864 original size:54 final size:53
Alignment explanation
Indices: 77035806--77036135 Score: 199
Period size: 54 Copynumber: 6.1 Consensus size: 53
77035796 ATTACTGTTT
* * **
77035806 TACCCTCGATTTACAAAATTACTAAAATACCCTAGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTA-ATTTGTAAAATTACCAAAA
* * ** * * *
77035860 TACCCTCGA-TCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAATACCCTAATTTGTAAAATTACCAAAA
* * *
77035913 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACTAAAATA-CCCTAATTTGTAAAATTACCAAAA
* * * *
77035967 TACCACT-GGTTTGTGAAATTACTGAAATATACTC-AATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACT-AAA-ATACCCTAATTTGTAAAATTACCAAAA
** * * *
77036021 TA-CCTTAATTTACAAAATTA-TAGAAATACCCTTAACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGATTTATAAAATTACTA-AAATACCC-TAA-TTTGT-AAAATTACCA-AAA
* * * ** * *
77036076 TACCAT-TAGTTTATAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAATACCC-TAATTTGTAAAATTACCAAAA
*
77036130 CACCCT
1 TACCCT
77036136 TGTAGGGTGA
Statistics
Matches: 217, Mismatches: 40, Indels: 38
0.74 0.14 0.13
Matches are distributed among these distances:
51 6 0.03
52 6 0.03
53 50 0.23
54 104 0.48
55 24 0.11
56 26 0.12
57 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTAATTTGTAAAATTACCAAAA
Found at i:77035924 original size:80 final size:81
Alignment explanation
Indices: 77035820--77035995 Score: 232
Period size: 80 Copynumber: 2.2 Consensus size: 81
77035810 CTCGATTTAC
*
77035820 AAAATTACTAAAATACCCTAGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCTAGGTTTACAAAATTACCAAAATACCCCT-AATCAGTAAAATTACCA
77035884 AAATACC-CTGGTCTGT
65 AAATACCACTGGTCTGT
* ** **
77035900 AAAATTGCTAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCA
1 AAAATTACTAAAATA-CCCTAGGTTTACAAAATTACCAAAATACCCCTAATCAGTAAAATTACCA
*
77035964 AAATACCACTGGTTTGT
65 AAATACCACTGGTCTGT
* *
77035981 GAAATTACTGAAATA
1 AAAATTACTAAAATA
77035996 TACTCAATTT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 55 0.66
81 28 0.34
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTAGGTTTACAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:77036024 original size:81 final size:81
Alignment explanation
Indices: 77035820--77036024 Score: 231
Period size: 80 Copynumber: 2.5 Consensus size: 81
77035810 CTCGATTTAC
* ** *
77035820 AAAATTACTAAAATA-CCCTAGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACC
1 AAAATTACTAAAATACCCCTA-ATTTGTAAAATTACCAAAATACCCCTCAATCAGTAAAATTACC
77035883 AAAATACCCTGGTCTGT
65 AAAATACCCTGGTCTGT
* ** **
77035900 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTCAATCAGTAAAATTACCA
*
77035964 AAATACCACTGGTTTGT
66 AAATACC-CTGGTCTGT
* *
77035981 GAAATTACTGAAATATA-CTC-AATTTGTAAAATTACCAAAATACC
1 AAAATTACT-AAA-ATACCCCTAATTTGTAAAATTACCAAAATACC
77036025 TTAATTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
80 54 0.50
81 45 0.42
82 5 0.05
83 3 0.03
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTCAATCAGTAAAATTACCA
AAATACCCTGGTCTGT
Found at i:77036114 original size:27 final size:27
Alignment explanation
Indices: 77035806--77036137 Score: 163
Period size: 27 Copynumber: 12.3 Consensus size: 27
77035796 ATTACTGTTT
* * *
77035806 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * *
77035833 TACCCTAGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * * *
77035860 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACTAAAA
* * *
77035887 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * *
77035913 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* ** * *
77035940 TACCCCTAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * *
77035967 TACCAC-TGGTTTGTGAAATTACTGAAA
1 TACC-CTTGGTTTATAAAATTACTAAAA
** *** * *
77035994 TATACTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
** *
77036021 TA-CCTTAATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTATAAAATTACTA-AAA
** *
77036047 TACCCTTAACTTTCTAAAAATTA-TAGAAA
1 TACCCTT-GGTTTAT-AAAATTACTA-AAA
* * *
77036076 TACCATTAGTTTATAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
* * * *
77036103 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACTAAAA
*
77036130 CACCCTTG
1 TACCCTTG
77036138 TAGGGTGAAA
Statistics
Matches: 243, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.00
26 40 0.16
27 172 0.71
28 11 0.05
29 19 0.08
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACTAAAA
Found at i:77036198 original size:27 final size:27
Alignment explanation
Indices: 77036168--77036259 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
77036158 ACCTCTATCA
* *
77036168 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
77036195 GGTAAAGTGACCCTAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
77036222 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
77036249 GGTAAAATGAC
1 GGTAAAATGAC
77036260 GAATATGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:77037126 original size:23 final size:24
Alignment explanation
Indices: 77037063--77037132 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
77037053 AAGGGTTATC
*
77037063 CCCCAGTTTACCGAAAAGGGCTTTG
1 CCCCAGTTTATC-AAAAGGGCTTTG
77037088 CCCCAGTTTATCAAAAGGGCTTTG
1 CCCCAGTTTATCAAAAGGGCTTTG
*
77037112 CCCCAG-TTATTAAAAGAGGCT
1 CCCCAGTTTATCAAAAG-GGCT
77037133 AGGCCTCCAG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
23 9 0.21
24 22 0.52
25 11 0.26
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (24 bp):
CCCCAGTTTATCAAAAGGGCTTTG
Found at i:77037508 original size:31 final size:31
Alignment explanation
Indices: 77037339--77037514 Score: 246
Period size: 31 Copynumber: 5.7 Consensus size: 31
77037329 GTTTACAGTA
* * *
77037339 AAGGCTTCAGCCCAATGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* * *
77037370 AAGGCTTCGGCCTAGAGATAAGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* *
77037401 AAGGCTTCGGCCTAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* *
77037432 AAGGCTTCTGCCCAGAGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
*
77037463 AAGGCTTCTGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
77037494 AAGGCTTCGGCCCAGT-ATATG
1 AAGGCTTCGGCCCAGTGATATG
77037515 TCAAGACTAA
Statistics
Matches: 130, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 5 0.04
31 125 0.96
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:77040935 original size:32 final size:32
Alignment explanation
Indices: 77040898--77040963 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
77040888 GGCGTCTGAG
* *
77040898 TATGAGAGATGCGTCCGTTTTGAGGACGGCCT
1 TATGAGAGATACGTCCATTTTGAGGACGGCCT
77040930 TATGAGAGATACGTCCATTTTGAGGACGGCCT
1 TATGAGAGATACGTCCATTTTGAGGACGGCCT
77040962 TA
1 TA
77040964 GGGATAAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (32 bp):
TATGAGAGATACGTCCATTTTGAGGACGGCCT
Found at i:77074177 original size:25 final size:25
Alignment explanation
Indices: 77074143--77074192 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
77074133 TTTTTAATTT
77074143 CAACATTAATAATCATAACAATGAAA
1 CAACATTAATAATCATAA-AATGAAA
*
77074169 CAACA-TAATATTCATAAAATGAAA
1 CAACATTAATAATCATAAAATGAAA
77074193 TTAAAGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 11 0.48
26 5 0.22
ACGTcount: A:0.58, C:0.14, G:0.04, T:0.24
Consensus pattern (25 bp):
CAACATTAATAATCATAAAATGAAA
Found at i:77074299 original size:47 final size:48
Alignment explanation
Indices: 77074239--77074333 Score: 122
Period size: 47 Copynumber: 2.0 Consensus size: 48
77074229 GAATAAAGCG
* * *
77074239 ACTTAAAGTAAATAATA-TAAA-AAGTTTCAAACAAATAATATATAAAA
1 ACTTAAAATAAATAATACTAAAGAAGCTTAAAACAAATAA-ATATAAAA
* *
77074286 ACTTAAAATAAATAATACTAAAGTAGCTTAAAATAAATAAATATAAAA
1 ACTTAAAATAAATAATACTAAAGAAGCTTAAAACAAATAAATATAAAA
77074334 GAAATTTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
47 16 0.39
48 12 0.29
49 13 0.32
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.27
Consensus pattern (48 bp):
ACTTAAAATAAATAATACTAAAGAAGCTTAAAACAAATAAATATAAAA
Found at i:77074332 original size:25 final size:22
Alignment explanation
Indices: 77074240--77074334 Score: 82
Period size: 25 Copynumber: 4.0 Consensus size: 22
77074230 AATAAAGCGA
*
77074240 CTTAAAGTAAATAATATAAAAAG
1 CTTAAAATAAATAATAT-AAAAG
* * * *
77074263 TTTCAAACAAATAATATATAAAAA
1 CTTAAAATAAAT-A-ATATAAAAG
77074287 CTTAAAATAAATAATACTAAAGTAG
1 CTTAAAATAAATAATA-TAAA--AG
77074312 CTTAAAATAAATAAATATAAAAG
1 CTTAAAATAAAT-AATATAAAAG
77074335 AAATTTTAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
22 3 0.05
23 15 0.26
24 14 0.25
25 21 0.37
26 4 0.07
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.27
Consensus pattern (22 bp):
CTTAAAATAAATAATATAAAAG
Found at i:77074589 original size:27 final size:27
Alignment explanation
Indices: 77074532--77074656 Score: 75
Period size: 27 Copynumber: 4.6 Consensus size: 27
77074522 CTAAGTAATC
*
77074532 ATATAAAAGATTTAAAATAGATAATATGT
1 ATATAAAA-ATTTAAAATA-ATAATAGGT
77074561 ATATAAAATAGTTTAAAATAA-AA-AGGT
1 ATATAAAA-A-TTTAAAATAATAATAGGT
*
77074588 ATCTAAAAATTTTCAAAATAAGTAATA--T
1 ATATAAAAA-TTT-AAAATAA-TAATAGGT
* * *
77074616 ATATAATATTTTAAAACAAATAAT--GT
1 ATATAAAAATTTAAAA-TAATAATAGGT
*
77074642 ATAT-GAAATTTAAAA
1 ATATAAAAATTTAAAA
77074657 AGGAATAGCC
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
25 8 0.10
26 17 0.22
27 22 0.28
28 9 0.12
29 12 0.15
30 10 0.13
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.34
Consensus pattern (27 bp):
ATATAAAAATTTAAAATAATAATAGGT
Found at i:77074652 original size:26 final size:25
Alignment explanation
Indices: 77074594--77074657 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 25
77074584 AGGTATCTAA
* *
77074594 AAATTTTCAAAATAAGTAATATATAT
1 AAATTTT-AAAACAAATAATATATAT
*
77074620 AATATTTTAAAACAAATAATGTATAT
1 AA-ATTTTAAAACAAATAATATATAT
*
77074646 GAAATTTAAAAA
1 -AAATTTTAAAA
77074658 GGAATAGCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 25 0.78
27 7 0.22
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
AAATTTTAAAACAAATAATATATAT
Found at i:77082765 original size:18 final size:19
Alignment explanation
Indices: 77082744--77082785 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
77082734 ACCTTTAGTG
*
77082744 TTATTCTTACTA-TCTTTT
1 TTATTCTTACTACTATTTT
* *
77082762 TTATTTTTATTACTATTTT
1 TTATTCTTACTACTATTTT
77082781 TTATT
1 TTATT
77082786 ATTAATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (19 bp):
TTATTCTTACTACTATTTT
Found at i:77084239 original size:19 final size:19
Alignment explanation
Indices: 77084212--77084258 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
77084202 TCATTTTTAG
77084212 TTTT-ATTTTTAT-TTTC-A
1 TTTTCATTTTT-TGTTTCTA
77084229 TTTTCATTTTTTGTTTCTA
1 TTTTCATTTTTTGTTTCTA
*
77084248 TTTTTATTTTT
1 TTTTCATTTTT
77084259 AATTGTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 11 0.42
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTTCATTTTTTGTTTCTA
Found at i:77084272 original size:5 final size:6
Alignment explanation
Indices: 77084194--77084278 Score: 82
Period size: 6 Copynumber: 13.5 Consensus size: 6
77084184 TTTTTATCTC
* * * *
77084194 TTTTAT TTTCAT TTTTAG TTTTAT TTTTAT TTTCAT TTTCAT TTTT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
77084241 GTTTCTAT TTTTAT TTTTAATT GTTTTAT TTTTAT TTT
1 -TTT-TAT TTTTAT TTTT-A-T -TTTTAT TTTTAT TTT
77084279 CTTAGACTTC
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
5 1 0.01
6 53 0.79
7 6 0.09
8 3 0.04
9 4 0.06
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:77086091 original size:31 final size:31
Alignment explanation
Indices: 77086053--77086116 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
77086043 CCTTTTCATA
77086053 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
77086084 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
77086115 TT
1 TT
77086117 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:77086356 original size:24 final size:25
Alignment explanation
Indices: 77086324--77086429 Score: 164
Period size: 24 Copynumber: 4.4 Consensus size: 25
77086314 CTAGAGGCCT
*
77086324 AGCCTTTTTTAATAACTGGGGCA-A
1 AGCCCTTTTTAATAACTGGGGCATA
77086348 AGCCC-TTTTAATAACTGGGGCATA
1 AGCCCTTTTTAATAACTGGGGCATA
77086372 AGCCC-TTTTAATAACTGGGGCATA
1 AGCCCTTTTTAATAACTGGGGCATA
* *
77086396 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTTTTAATAACTGGGGCATA
77086421 AGCCCTTTT
1 AGCCCTTTT
77086430 ACACTTCCTC
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 17 0.22
24 34 0.45
25 25 0.33
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTTAATAACTGGGGCATA
Found at i:77086414 original size:49 final size:47
Alignment explanation
Indices: 77086330--77086430 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 47
77086320 GCCTAGCCTT
77086330 TTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
77086377 TTTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCA-AAGCCCTTT-TAATAACTGGGGCATAAGCCC
77086426 TTTTA
1 TTTTA
77086431 CACTTCCTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 17 0.33
48 9 0.18
49 25 0.49
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:77086503 original size:20 final size:20
Alignment explanation
Indices: 77086478--77086544 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
77086468 TTACGAATAC
77086478 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77086498 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
77086518 GTCATATGCATACCATACAT
1 ATCATGTGCATATCATACAT
*
77086538 ACCATGT
1 ATCATGT
77086545 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77086613 original size:25 final size:25
Alignment explanation
Indices: 77086581--77086628 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77086571 ATATATAAAC
* * *
77086581 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77086606 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77086629 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77092097 original size:18 final size:18
Alignment explanation
Indices: 77092074--77092117 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
77092064 TTTGGTACTT
77092074 TCCATATTGGTTTTACGA
1 TCCATATTGGTTTTACGA
77092092 TCCATATTGGTTTTACGA
1 TCCATATTGGTTTTACGA
77092110 TCCATATT
1 TCCATATT
77092118 CGGGGTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (18 bp):
TCCATATTGGTTTTACGA
Found at i:77106048 original size:20 final size:21
Alignment explanation
Indices: 77106023--77106066 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
77106013 GTAGTGGAAA
77106023 TTTATTTTCTTA-GAATAA-AT
1 TTTATTTT-TTAGGAATAATAT
77106043 TTTATTTTTTAGGAATAATAT
1 TTTATTTTTTAGGAATAATAT
77106064 TTT
1 TTT
77106067 TTACTGAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 14 0.64
21 5 0.23
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (21 bp):
TTTATTTTTTAGGAATAATAT
Found at i:77109344 original size:42 final size:42
Alignment explanation
Indices: 77109206--77109321 Score: 108
Period size: 42 Copynumber: 2.8 Consensus size: 42
77109196 GCCCGAAAGC
* * * * *
77109206 TAAATAGAAGCTCATAAGAGCTAAACAGAAACCCA-AAATGGT
1 TAAACAGAAGCTCAAAAGAGCTGAACGGAAACCTATAAA-GGT
* ** **
77109248 TGAATGGAAGCTCGTAAGAGCTGAACGGAAACCTATAAAGGT
1 TAAACAGAAGCTCAAAAGAGCTGAACGGAAACCTATAAAGGT
* *
77109290 TAAACAAAAGCTCAAAAGAGTTGAACGGAAAC
1 TAAACAGAAGCTCAAAAGAGCTGAACGGAAAC
77109322 TCATATGAGT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 57 0.95
43 3 0.05
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (42 bp):
TAAACAGAAGCTCAAAAGAGCTGAACGGAAACCTATAAAGGT
Found at i:77111020 original size:4 final size:4
Alignment explanation
Indices: 77111011--77111039 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
77111001 TTTTCAAAAT
77111011 TTAA TTAA TTAA TTAA TTAA TTAA -TAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
77111040 CAAAAAACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:77113189 original size:11 final size:12
Alignment explanation
Indices: 77113152--77113192 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
77113142 TTTACAAAAT
*
77113152 TTTATTTCTTTA
1 TTTATTCCTTTA
*
77113164 TTCATTCCTTTA
1 TTTATTCCTTTA
77113176 TTTATTCC-TTA
1 TTTATTCCTTTA
77113187 TTTATT
1 TTTATT
77113193 TTTATTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTCCTTTA
Found at i:77115862 original size:30 final size:32
Alignment explanation
Indices: 77115822--77115902 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 32
77115812 TATGGTGTGC
*
77115822 AATTTCTTTGAATTTTTTAATTTATTATTAT-
1 AATTTCTTTGAATTTTTTAATGTATTATTATA
* * *
77115853 ACTTT-TTTGAAATTATTT-ATGTATTTTTATA
1 AATTTCTTTG-AATTTTTTAATGTATTATTATA
77115884 AATTTCTTTGAATTTTTTA
1 AATTTCTTTGAATTTTTTA
77115903 GAATTAAGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
30 14 0.35
31 22 0.55
32 4 0.10
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (32 bp):
AATTTCTTTGAATTTTTTAATGTATTATTATA
Found at i:77125798 original size:23 final size:24
Alignment explanation
Indices: 77125753--77125798 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
77125743 GTATCACATT
* *
77125753 TCATATACCAAAATCAAATCATAA
1 TCATATACCAAAACCAAACCATAA
*
77125777 TCATA-ACCAAAACCAAGCCATA
1 TCATATACCAAAACCAAACCATA
77125799 TCACATGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.52, C:0.26, G:0.02, T:0.20
Consensus pattern (24 bp):
TCATATACCAAAACCAAACCATAA
Found at i:77126383 original size:43 final size:44
Alignment explanation
Indices: 77126314--77126414 Score: 136
Period size: 43 Copynumber: 2.3 Consensus size: 44
77126304 AGCTCGTACA
* *
77126314 ATGCTAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAATCATAA-ATCG
*
77126357 ATGCC-ACTGTCCCAGACAGGGTCTTACATGTAAATCATAAGTCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAAATCATAAATCG
77126401 ATGCCAACGTCCCA
1 ATGCCAACGTCCCA
77126415 AATGTGGTCT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
42 2 0.04
43 26 0.51
44 19 0.37
45 4 0.08
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAATCATAAATCG
Found at i:77126424 original size:44 final size:42
Alignment explanation
Indices: 77126314--77126428 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 42
77126304 AGCTCGTACA
*
77126314 ATGCTAACGTCCCAGACA-TGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCA-A-AGTGGTCTTACATGTAATCAAATATCG
*
77126357 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGTAAATCATAA-GTCG
1 ATGCCAAC-GTCCCA-A-AGTGGTCTTACATGT-AATCA-AATATCG
77126401 ATGCCAACGTCCCAAATGTGGTCTTACA
1 ATGCCAACGTCCCAAA-GTGGTCTTACA
77126429 GAAAAAACAT
Statistics
Matches: 63, Mismatches: 2, Indels: 13
0.81 0.03 0.17
Matches are distributed among these distances:
42 3 0.05
43 28 0.44
44 28 0.44
45 4 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAAAGTGGTCTTACATGTAATCAAATATCG
Found at i:77128049 original size:63 final size:64
Alignment explanation
Indices: 77127982--77128128 Score: 165
Period size: 63 Copynumber: 2.3 Consensus size: 64
77127972 CATATAGAAG
* * * * * *
77127982 GTGTTGATGTAGGGAATGA-TTGTGTGTGTTGTGATGCTTGTATAAAATAAACC-GATGTTCAAT
1 GTGTTGATGCAGGGAATGAGTTGTGCGCGTTGTGATGCTTATATAAAATAAACCGGA-GCTAAAT
* * * *
77128045 GTGTTGATACAGGAAAT-AGTTGTGCGCGTTGTGGTGCTTATGTAAAATAAACCGGAGCTAAAT
1 GTGTTGATGCAGGGAATGAGTTGTGCGCGTTGTGATGCTTATATAAAATAAACCGGAGCTAAAT
*
77128108 GTGTTGATGCGGGGAATGAGT
1 GTGTTGATGCAGGGAATGAGT
77128129 GTATGGGGGT
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
62 1 0.01
63 62 0.91
64 5 0.07
ACGTcount: A:0.27, C:0.08, G:0.31, T:0.33
Consensus pattern (64 bp):
GTGTTGATGCAGGGAATGAGTTGTGCGCGTTGTGATGCTTATATAAAATAAACCGGAGCTAAAT
Found at i:77136661 original size:24 final size:23
Alignment explanation
Indices: 77136634--77136678 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
77136624 AAATATAAGG
* *
77136634 ATAAATTTTTACCAGTAAAAATAA
1 ATAAAATTTTAACAG-AAAAATAA
77136658 ATAAAATTTTAACAGAAAAAT
1 ATAAAATTTTAACAGAAAAAT
77136679 TAATTTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAAAATTTTAACAGAAAAATAA
Found at i:77137213 original size:42 final size:42
Alignment explanation
Indices: 77137166--77137252 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
77137156 AAATGTAAGA
77137166 AAGAAAACTATATTACTCACTTTTATAATCAAGAGTAACATC
1 AAGAAAACTATATTACTCACTTTTATAATCAAGAGTAACATC
77137208 AAGAAAACTATATTACTCACTTTTATAATCAAGAGTAACATC
1 AAGAAAACTATATTACTCACTTTTATAATCAAGAGTAACATC
77137250 AAG
1 AAG
77137253 GGCTATATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (42 bp):
AAGAAAACTATATTACTCACTTTTATAATCAAGAGTAACATC
Found at i:77141785 original size:21 final size:21
Alignment explanation
Indices: 77141759--77141799 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
77141749 CCACCGCCAG
77141759 CCTTTTTCTGCTCCCCTCCAC
1 CCTTTTTCTGCTCCCCTCCAC
77141780 CCTTTTTCTGCTCCCCTCCA
1 CCTTTTTCTGCTCCCCTCCA
77141800 GCCATATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.05, C:0.51, G:0.05, T:0.39
Consensus pattern (21 bp):
CCTTTTTCTGCTCCCCTCCAC
Found at i:77142855 original size:13 final size:13
Alignment explanation
Indices: 77142833--77142862 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
77142823 CTAAATTATT
77142833 CATGCAATAAATA
1 CATGCAATAAATA
*
77142846 CATGCGATAAATA
1 CATGCAATAAATA
77142859 CATG
1 CATG
77142863 TAAATTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (13 bp):
CATGCAATAAATA
Found at i:77148356 original size:17 final size:18
Alignment explanation
Indices: 77148334--77148385 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
77148324 TCCAGTCAAT
77148334 AAAATTAATTTAAT-TAA
1 AAAATTAATTTAATATAA
* *
77148351 AAAATTTATTAAAATTATAA
1 AAAATTAATT-TAA-TATAA
77148371 AAAATTTAATTTAAT
1 AAAA-TTAATTTAAT
77148386 CGATCCGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
17 9 0.33
18 2 0.07
19 2 0.07
20 9 0.33
21 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATTAATTTAATATAA
Found at i:77149256 original size:21 final size:23
Alignment explanation
Indices: 77149207--77149262 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
77149197 AAAAGTGAAG
77149207 AACGAAAAATT-ATAATTAAAAT
1 AACGAAAAATTGATAATTAAAAT
77149229 AACGAAAAATTGA-AA-TAAAAT
1 AACGAAAAATTGATAATTAAAAT
77149250 -A-GAGAAAATTGAT
1 AACGA-AAAATTGAT
77149263 TTGATGATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 2 0.06
20 9 0.29
21 6 0.19
22 13 0.42
23 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.23
Consensus pattern (23 bp):
AACGAAAAATTGATAATTAAAAT
Found at i:77156268 original size:18 final size:18
Alignment explanation
Indices: 77156247--77156286 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
77156237 TTTAAAAGAT
77156247 ATTTAAAATTTTACATTA
1 ATTTAAAATTTTACATTA
* *
77156265 ATTT-ATATTTTGCATTA
1 ATTTAAAATTTTACATTA
77156282 ATTTA
1 ATTTA
77156287 TATTTTAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (18 bp):
ATTTAAAATTTTACATTA
Found at i:77156280 original size:17 final size:17
Alignment explanation
Indices: 77156254--77156293 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
77156244 GATATTTAAA
77156254 ATTTTACATTAATTTAT
1 ATTTTACATTAATTTAT
*
77156271 ATTTTGCATTAATTTAT
1 ATTTTACATTAATTTAT
77156288 ATTTTA
1 ATTTTA
77156294 GGTATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (17 bp):
ATTTTACATTAATTTAT
Found at i:77165706 original size:26 final size:24
Alignment explanation
Indices: 77165662--77165711 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
77165652 ATTTGTTTTA
*
77165662 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
77165686 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
77165712 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:77169828 original size:71 final size:72
Alignment explanation
Indices: 77169703--77169848 Score: 267
Period size: 71 Copynumber: 2.0 Consensus size: 72
77169693 TATCACTTTT
* *
77169703 CTAAGTGTGGTGTTTAACCTTACCTCTGGTTCCTATCTTGCATAGATAGTGGGTCAAG-TTTTTT
1 CTAAATGTGGTGTTTAACCTTACCTCTGGTTCCTATCTTGCATAGATAGCGGGTCAAGTTTTTTT
77169767 TATCAAA
66 TATCAAA
77169774 CTAAATGTGGTGTTTAACCTTACCTCTGGTTCCTATCTTGCATAGATAGCGGGTCAAGTTTTTTT
1 CTAAATGTGGTGTTTAACCTTACCTCTGGTTCCTATCTTGCATAGATAGCGGGTCAAGTTTTTTT
77169839 TATCAAA
66 TATCAAA
77169846 CTA
1 CTA
77169849 TCTCTTATAA
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 56 0.78
72 16 0.22
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Consensus pattern (72 bp):
CTAAATGTGGTGTTTAACCTTACCTCTGGTTCCTATCTTGCATAGATAGCGGGTCAAGTTTTTTT
TATCAAA
Found at i:77171785 original size:51 final size:51
Alignment explanation
Indices: 77171709--77171812 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
77171699 CTCTGCTAGC
*
77171709 TCATTGAAATAAAAAATAAATTCTTAGTGTGGATTTTTCCTTTCACCGAGT
1 TCATTGAAACAAAAAATAAATTCTTAGTGTGGATTTTTCCTTTCACCGAGT
77171760 TCATTGAAACAAAAAATAAATTCTTAGTGTGGATTTTTCCTTTCACCGAGT
1 TCATTGAAACAAAAAATAAATTCTTAGTGTGGATTTTTCCTTTCACCGAGT
77171811 TC
1 TC
77171813 CTATAAAATA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (51 bp):
TCATTGAAACAAAAAATAAATTCTTAGTGTGGATTTTTCCTTTCACCGAGT
Found at i:77175268 original size:21 final size:21
Alignment explanation
Indices: 77175244--77175291 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
77175234 TGTTATCTAT
*
77175244 ACGGGCATATGTGGCCTCCAC
1 ACGGGCATATGCGGCCTCCAC
* *
77175265 ACGGGCATGTGCGGCCTTCAC
1 ACGGGCATATGCGGCCTCCAC
*
77175286 ATGGGC
1 ACGGGC
77175292 GCGTAGGCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (21 bp):
ACGGGCATATGCGGCCTCCAC
Found at i:77177028 original size:44 final size:45
Alignment explanation
Indices: 77176940--77177028 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
77176930 AGAACAGAAA
*
77176940 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
77176986 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
77177029 ATAATTCATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:77177039 original size:44 final size:45
Alignment explanation
Indices: 77176933--77177044 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 45
77176923 ACAGGACAGA
* * *
77176933 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * *
77176979 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
**
77177023 ACAGGAATAATTCATGTAAGTC
1 ACAGGAATAAGCCATGTAAGTC
77177045 TATGTCAAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.55
46 26 0.45
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:77183812 original size:37 final size:37
Alignment explanation
Indices: 77183752--77183823 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
77183742 TCAAAGTTAA
*
77183752 TTAATTGAAAAAACCAACCGAATTAAAATTGGTTTAG
1 TTAATTGAAAAAACCAACCGAATTAAAATTAGTTTAG
* * **
77183789 TTAATTGAAAAAATCGATTGAATTAAAATTAGTTT
1 TTAATTGAAAAAACCAACCGAATTAAAATTAGTTT
77183824 GGTTTGGTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (37 bp):
TTAATTGAAAAAACCAACCGAATTAAAATTAGTTTAG
Found at i:77204156 original size:40 final size:41
Alignment explanation
Indices: 77204112--77204199 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 41
77204102 ATACATTAGC
*
77204112 GGCGTTTGCAAT-AAAACGCCACAAAAAATTGAGCAATAGA
1 GGCGTTTGCAATCAAAACGCCACAAAAAACTGAGCAATAGA
*** * * *
77204152 GGCGTTTTTGATCCAAACGCCACTAAAAACTGAGCAATAGT
1 GGCGTTTGCAATCAAAACGCCACAAAAAACTGAGCAATAGA
77204193 GGCGTTT
1 GGCGTTT
77204200 TTGGCCCAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 9 0.22
41 31 0.77
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (41 bp):
GGCGTTTGCAATCAAAACGCCACAAAAAACTGAGCAATAGA
Found at i:77204172 original size:41 final size:41
Alignment explanation
Indices: 77204125--77204231 Score: 151
Period size: 41 Copynumber: 2.6 Consensus size: 41
77204115 GTTTGCAATA
* * *
77204125 AAACGCCACAAAAAATTGAGCAATAGAGGCGTTTTTGATCC
1 AAACGCCACTAAAAACTGAGCAATAGAGGCGTTTTTGACCC
* *
77204166 AAACGCCACTAAAAACTGAGCAATAGTGGCGTTTTTGGCCC
1 AAACGCCACTAAAAACTGAGCAATAGAGGCGTTTTTGACCC
* *
77204207 AAACGCCGCTAAAAACTGAACAATA
1 AAACGCCACTAAAAACTGAGCAATA
77204232 ATAGCGGCGC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (41 bp):
AAACGCCACTAAAAACTGAGCAATAGAGGCGTTTTTGACCC
Found at i:77204960 original size:43 final size:43
Alignment explanation
Indices: 77204840--77204962 Score: 104
Period size: 43 Copynumber: 2.9 Consensus size: 43
77204830 GTTTAGGGGA
* * *
77204840 TAGGGGTTATGATATAATGTTTATTATTTTGGGGTTT-AGAATT
1 TAGGGTTTATGATATAATGTTTATTGTTTT-TGGTTTAAGAATT
* * * * * * *** **
77204883 TATGATTTAAGATTTAAGGTTTAATGTCCATGGTTTAAGGGTT
1 TAGGGTTTATGATATAATGTTTATTGTTTTTGGTTTAAGAATT
77204926 TAGGGTTTATGATATAATGTTTATTGTTTTTGGTTTA
1 TAGGGTTTATGATATAATGTTTATTGTTTTTGGTTTA
77204963 GAGTTTGTGG
Statistics
Matches: 56, Mismatches: 23, Indels: 2
0.69 0.28 0.02
Matches are distributed among these distances:
42 5 0.09
43 51 0.91
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.50
Consensus pattern (43 bp):
TAGGGTTTATGATATAATGTTTATTGTTTTTGGTTTAAGAATT
Found at i:77205419 original size:17 final size:18
Alignment explanation
Indices: 77205397--77205430 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77205387 TATTTGTTTT
77205397 AATATA-TTAAAATTATC
1 AATATAGTTAAAATTATC
*
77205414 AATATAGTTTAAATTAT
1 AATATAGTTAAAATTAT
77205431 TTAAGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATATAGTTAAAATTATC
Found at i:77209128 original size:85 final size:85
Alignment explanation
Indices: 77209039--77209309 Score: 355
Period size: 85 Copynumber: 3.2 Consensus size: 85
77209029 AAGGTTATAT
* * * * **
77209039 TCTTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGT-TTGTTCTATAGCAGCATTTGTAAAAA
1 TCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCATTTGT-GGAA
77209103 AAGCGTCGCTAAAGGTCATGG
65 AAGCGTCGCTAAAGGTCATGG
* ** * *
77209124 TCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGGAA
1 TCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGAAA
77209189 AGCGTCGCTAAAGGTCATGG
66 AGCGTCGCTAAAGGTCATGG
* * * * * *
77209209 TCTTTAGCAGCGCTTGTGAAAAAAGCACCGGTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGGAA
1 TCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCATTTGT-GGAA
*
77209274 AAGCGCCGCTAAAGGTCATGG
65 AAGCGTCGCTAAAGGTCATGG
77209295 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
77209310 TTTTAAATAA
Statistics
Matches: 160, Mismatches: 24, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
85 106 0.66
86 54 0.34
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (85 bp):
TCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGAAA
AGCGTCGCTAAAGGTCATGG
Found at i:77209153 original size:43 final size:43
Alignment explanation
Indices: 77209039--77209309 Score: 323
Period size: 43 Copynumber: 6.3 Consensus size: 43
77209029 AAGGTTATAT
* * *
77209039 TCTTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGT-TTGT
1 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGG
* * * * * *
77209081 TCTATAGCAGCATTTGTAAAAAAAGCGTCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGG
* * *
77209124 TCTTTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGG
* * * *
77209167 TCTTTAGCAGCATTTGTG-GGAAAGCGTCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGG
* * * * *
77209209 TCTTTAGCAGCGCTTGTGAAAAAAGCACCGGTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGG
77209252 TCTTTAGCGGCGTTTGTCG-GAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAAGGTCATGG
77209295 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
77209310 TTTTAAATAA
Statistics
Matches: 195, Mismatches: 31, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
42 71 0.36
43 123 0.63
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGG
Done.