Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 227 of 311
Found at i:77209217 original size:128 final size:127
Alignment explanation
Indices: 77209060--77209302 Score: 362
Period size: 128 Copynumber: 1.9 Consensus size: 127
77209050 GTTTGTGACA
* * * **
77209060 AAAGCGCCGCTAAAGGTTTGTTCTATAGCAGCATTTGTAAAAAAAGCGTCGCTAAAGGTCATGGT
1 AAAGCGCCGCTAAAGGTATGGTCTATAGCAGCACTTGTAAAAAAAGCACCGCTAAAGGTCATGGT
*
77209125 CTTTAGCGGCGTTTG-CGGGAAAAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGG
66 CTTTAGCGGCGTTTGTC-GGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGG
* * * * *
77209187 AAAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCGCTTGTGAAAAAAGCACCGGTAAAGGTCATGG
1 AAAGCGCCGCTAAAGGT-ATGGTCTATAGCAGCACTTGTAAAAAAAGCACCGCTAAAGGTCATGG
77209252 TCTTTAGCGGCGTTTGTCGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGC
65 TCTTTAGCGGCGTTTGTCGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGC
77209303 GGCGTTTTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
127 16 0.16
128 86 0.83
129 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (127 bp):
AAAGCGCCGCTAAAGGTATGGTCTATAGCAGCACTTGTAAAAAAAGCACCGCTAAAGGTCATGGT
CTTTAGCGGCGTTTGTCGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGG
Found at i:77214747 original size:23 final size:23
Alignment explanation
Indices: 77214721--77214789 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
77214711 TATATAAAAA
77214721 TATTCAAATTTTAAGGATTATAT
1 TATTCAAATTTTAAGGATTATAT
* * *
77214744 TATTCAGA----AA-GA-TAAAA
1 TATTCAAATTTTAAGGATTATAT
77214761 TATTCAAATTTTAAGGATTATAT
1 TATTCAAATTTTAAGGATTATAT
*
77214784 TGTTCA
1 TATTCA
77214790 CAAAGATAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 12
0.63 0.13 0.23
Matches are distributed among these distances:
17 10 0.30
18 2 0.06
19 2 0.06
21 2 0.06
22 2 0.06
23 15 0.45
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (23 bp):
TATTCAAATTTTAAGGATTATAT
Found at i:77214762 original size:40 final size:40
Alignment explanation
Indices: 77214717--77214798 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
77214707 TTTATATATA
*
77214717 AAAATATTCAAATTTTAAGGATTATATTATTCAGAAAGAT
1 AAAATATTCAAATTTTAAGGATTATATTATTCACAAAGAT
*
77214757 AAAATATTCAAATTTTAAGGATTATATTGTTCACAAAGAT
1 AAAATATTCAAATTTTAAGGATTATATTATTCACAAAGAT
77214797 AA
1 AA
77214799 TCATAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (40 bp):
AAAATATTCAAATTTTAAGGATTATATTATTCACAAAGAT
Found at i:77216612 original size:27 final size:27
Alignment explanation
Indices: 77216558--77216612 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
77216548 ACTCAGAACT
*
77216558 GAGTTAGAGAGTATTTTAGACCTTGAG
1 GAGTTAGAGAGTATTTTAGACCTGGAG
*
77216585 GAGTTAGAGAGTATTTTAGAGCTGGAG
1 GAGTTAGAGAGTATTTTAGACCTGGAG
77216612 G
1 G
77216613 GGCGTTGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.05, G:0.35, T:0.31
Consensus pattern (27 bp):
GAGTTAGAGAGTATTTTAGACCTGGAG
Found at i:77217196 original size:30 final size:30
Alignment explanation
Indices: 77217160--77217258 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
77217150 CTAGCCTTTA
77217160 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
77217190 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
77217220 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
77217250 CCACCACCA
1 CCACCACCA
77217259 CTTGTACCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:77217859 original size:29 final size:28
Alignment explanation
Indices: 77217822--77217936 Score: 102
Period size: 29 Copynumber: 4.3 Consensus size: 28
77217812 GTATATATAT
*
77217822 TATACTATTTATGTATATATCTTTAATAC
1 TATATTATTTATGTATATAT-TTTAATAC
*
77217851 TATATTATTTATATATATATATTT--TAC
1 TATATTATTTATGTATATAT-TTTAATAC
*
77217878 -ATGTTATCTTATGTATATATTTTAAT--
1 TATATTAT-TTATGTATATATTTTAATAC
* *
77217904 TATATTATGTATGTAT-T-TTTT-ACAC
1 TATATTATTTATGTATATATTTTAATAC
77217929 TATATTAT
1 TATATTAT
77217937 GTACATATTT
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.01
24 4 0.06
25 9 0.12
26 16 0.22
27 20 0.28
28 1 0.01
29 21 0.29
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (28 bp):
TATATTATTTATGTATATATTTTAATAC
Found at i:77217872 original size:78 final size:78
Alignment explanation
Indices: 77217790--77217936 Score: 172
Period size: 78 Copynumber: 1.9 Consensus size: 78
77217780 ATATATTAGG
*
77217790 TATATTCTAAAT-TCTATATTACGTATATATATTATACTAT-TTATGTATATATCTTTAATACTA
1 TATATTCTAAATGT-TATATTACGTATATATATTA-ACTATATTATGTATATATCTTTAACACTA
77217853 TATTATTTATATATA
64 TATTATTTATATATA
* * * * * * * * *
77217868 TATATTTTACATGTTATCTTATGTATATATTTTAATTATATTATGTATGTATTTTTTACACTATA
1 TATATTCTAAATGTTATATTACGTATATATATTAACTATATTATGTATATATCTTTAACACTATA
77217933 TTAT
66 TTAT
77217937 GTACATATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
77 4 0.07
78 52 0.91
79 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (78 bp):
TATATTCTAAATGTTATATTACGTATATATATTAACTATATTATGTATATATCTTTAACACTATA
TTATTTATATATA
Found at i:77217937 original size:25 final size:24
Alignment explanation
Indices: 77217887--77217973 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
77217877 CATGTTATCT
*
77217887 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
77217913 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
** * *
77217938 TACATA-TTTTTAA-TATTATCACG
1 TATGTATTTTTTAACTA-TATTATG
*
77217961 TATTTATTTTTTA
1 TATGTATTTTTTA
77217974 TATATGTACA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 2 0.04
23 10 0.20
24 17 0.33
25 15 0.29
26 7 0.14
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:77217955 original size:20 final size:20
Alignment explanation
Indices: 77217930--77217988 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
77217920 TTTTTACACT
77217930 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
77217950 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
77217973 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
77217989 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:77223349 original size:5 final size:5
Alignment explanation
Indices: 77223339--77223371 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
77223329 AATAATTAAG
77223339 TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT
77223372 TATATATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:77224457 original size:12 final size:12
Alignment explanation
Indices: 77224440--77224464 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77224430 GCCGACTACT
77224440 GTTACTGTTACC
1 GTTACTGTTACC
77224452 GTTACTGTTACC
1 GTTACTGTTACC
77224464 G
1 G
77224465 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:77224988 original size:20 final size:20
Alignment explanation
Indices: 77224963--77225015 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
77224953 CTTCAGCAAA
77224963 CTTTTGGTGATGTATATTTT
1 CTTTTGGTGATGTATATTTT
77224983 CTTTTGGTGATGTATATTTT
1 CTTTTGGTGATGTATATTTT
*
77225003 CTTTTGGTAATGT
1 CTTTTGGTGATGT
77225016 GGCATGTGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.06, G:0.21, T:0.58
Consensus pattern (20 bp):
CTTTTGGTGATGTATATTTT
Found at i:77225328 original size:9 final size:9
Alignment explanation
Indices: 77225299--77225349 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
77225289 ATAAAAAAAG
77225299 AAATAAAATA
1 AAAT-AAATA
77225309 AAATAAAATA
1 AAAT-AAATA
77225319 AAATAAATA
1 AAATAAATA
77225328 ATAAT-AATA
1 A-AATAAATA
77225337 ATAAT-AATA
1 A-AATAAATA
77225346 AAAT
1 AAAT
77225350 TGGAATACTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 3 0.08
9 20 0.50
10 17 0.43
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (9 bp):
AAATAAATA
Found at i:77225335 original size:6 final size:5
Alignment explanation
Indices: 77225299--77225349 Score: 68
Period size: 5 Copynumber: 9.8 Consensus size: 5
77225289 ATAAAAAAAG
77225299 AAATA AAATA AAATA AAATA AAAT- AAATA ATAATA ATAATA ATAATA
1 AAATA AAATA AAATA AAATA AAATA AAATA A-AATA A-AATA A-AATA
77225346 AAAT
1 AAAT
77225350 TGGAATACTT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.09
5 23 0.52
6 17 0.39
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (5 bp):
AAATA
Found at i:77232783 original size:75 final size:74
Alignment explanation
Indices: 77232673--77233038 Score: 396
Period size: 75 Copynumber: 4.9 Consensus size: 74
77232663 CTACGGTTCA
* * * * *
77232673 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACATGTTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGCTGAGGTATTTTCAAT
77232738 TTCTGCCTTTC
64 TTCTGCCTTTC
* * * * *
77232749 -AAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAAGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
*
77232813 CTGTCTTTC
66 CTGCCTTTC
* * * *
77232822 AAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAAT
*
77232887 TTCTGTCTTTC
64 TTCTGCCTTTC
* * * *
77232898 AAAATAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTT-GAT
1 AAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAAT
* *
77232962 TTATGCTTTTC
64 TTCTGCCTTTC
* * ** * * *
77232973 -AAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
77233037 CT
66 CT
77233039 ATTTTTCAAT
Statistics
Matches: 252, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
72 5 0.02
73 78 0.31
74 5 0.02
75 93 0.37
76 71 0.28
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
CTGCCTTTC
Found at i:77232931 original size:151 final size:150
Alignment explanation
Indices: 77232669--77232943 Score: 374
Period size: 151 Copynumber: 1.8 Consensus size: 150
77232659 ATTTCTACGG
* * * * * * * * *
77232669 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACATGTTGAGGTATTTT
1 TTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTTCACAGACACGCTGAGGTAATTT
77232734 CAATTTCTGCCTTTCAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGA
66 CAATTTCTGCCTTTCAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGA
77232799 AGTATTTTCAATTTCTGTCT
131 AGTATTTTCAATTTCTGTCT
77232819 TTCAAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCC-TCA-AGACACGCTGAGGTAATT
1 TTCAAAAAAA-TCAACTCATACTGCAAGAAGTGAGTTGAGCCTTCACAGACACGCTGAGGTAATT
* * * * * *
77232882 TCAATTTCTGTCTTTCAAAATAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
65 TCAATTTCTGCCTTTC-AAA-AATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACA
77232944 TGCTGAGGTA
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
149 29 0.27
150 15 0.14
151 63 0.59
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (150 bp):
TTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTTCACAGACACGCTGAGGTAATTT
CAATTTCTGCCTTTCAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGA
AGTATTTTCAATTTCTGTCT
Found at i:77233071 original size:13 final size:13
Alignment explanation
Indices: 77233027--77233071 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
77233017 CGCCGAGGTA
*
77233027 TTTTTAATTTCTA
1 TTTTTAATTTCTG
77233040 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
* *
77233054 CTTTTAATTTATG
1 TTTTTAATTTCTG
77233067 TTTTT
1 TTTTT
77233072 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.18, C:0.09, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:77233136 original size:100 final size:98
Alignment explanation
Indices: 77232955--77233323 Score: 381
Period size: 100 Copynumber: 3.8 Consensus size: 98
77232945 GCTGAGGTAA
* * * *
77232955 TTTTGATTTATGCTTTTCAAAAATCAAATCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
* *
77233020 CGAGGTATTTTTAATTTCTATTTTTCAATTTCTGC
66 TGAGGTATTTTCAATTTC-ATTTTTCAATTT-TGC
*
77233055 TTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
*
77233120 TGAGGTATTTTCAATTTCCGTTTTTCAATTTTTGCC
66 TGAGGTATTTTCAATTT-CATTTTTCAA-TTTTG-C
** * * * * *
77233156 TTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACGC
1 TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
*
77233219 TGAGGTATTTTC-A----A-TTTTC-GTTTT--
66 TGAGGTATTTTCAATTTCATTTTTCAATTTTGC
* * *
77233243 TTTTAATTTATG--TTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCA-AG-A
1 TTTTAATTTATGCTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
*
77233304 CGCTGAGGTAATTTCAATTT
63 CGCTGAGGTATTTTCAATTT
77233324 TTGTTTGTCA
Statistics
Matches: 229, Mismatches: 28, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
85 4 0.02
87 8 0.03
88 15 0.07
89 1 0.00
90 38 0.17
92 5 0.02
98 1 0.00
99 54 0.24
100 85 0.37
101 18 0.08
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (98 bp):
TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
TGAGGTATTTTCAATTTCATTTTTCAATTTTGC
Found at i:77233425 original size:77 final size:74
Alignment explanation
Indices: 77233255--77233558 Score: 321
Period size: 77 Copynumber: 4.0 Consensus size: 74
77233245 TTAATTTATG
* * ** *
77233255 TTTCAAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAG-ACGCTGAGGTAATTTC
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTC
77233319 -AATT-TTTGT
65 AAATTCTTT-T
* *
77233328 TTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGATATTTT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTT
77233391 CAAATTCTATTT
64 CAAATTCT-TTT
* *
77233403 TTATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTTAGCCTCGGGACACGCTGAGGTATTTT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACGCTGAGGTATTTT
* **
77233468 CAATTTCTGCT
64 CAAATTCTTTT
* * * **
77233479 TTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACGTTGAGGTCCTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG---CACGCTGAGGTATTT
*
77233544 TCAAATTCTATT
63 TCAAATTCTTTT
77233556 TTT
1 TTT
77233559 AATTTTTTTT
Statistics
Matches: 195, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
71 36 0.18
72 1 0.01
73 15 0.08
74 6 0.03
75 47 0.24
76 8 0.04
77 82 0.42
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (74 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCA
AATTCTTTT
Found at i:77233755 original size:71 final size:71
Alignment explanation
Indices: 77233670--77233807 Score: 222
Period size: 71 Copynumber: 1.9 Consensus size: 71
77233660 CTGTTTTAAT
* *
77233670 TCAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
77233735 TTATCA
66 TTATCA
* * * *
77233741 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACTCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
77233806 TT
66 TT
77233808 CTGCTCAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:77233783 original size:159 final size:155
Alignment explanation
Indices: 77233581--77234159 Score: 452
Period size: 155 Copynumber: 3.7 Consensus size: 155
77233571 TTTATGTGTT
* * * * *
77233581 TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAATA-CGTTGAGGTGTTTTCCAT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCGTTGAGGTATTTTCAAT
** * *
77233645 TTCTATTTTCAATTTCTGTTTTAATTCAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAACCT
66 TTC--TGCTCAATTTATG-TTT--TTC-AAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCT
77233710 CA-AGTCACATTGAGGTATTTTCAA-TT-T-ATCA
125 CACA-T-AC--TGAGGTATTTTCAATTTCTGATCA
77233741 TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACTCGTTGAGGTATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CGTTGAGGTATTTTCAA
* *
77233805 TTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACAT
65 TTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCACAT
* * * **
77233870 GCTGAGGTGTTTTCAATTTCTGTTTG
130 ACTGAGGTATTTTCAATTTCTGATCA
* *
77233896 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACACGCTGAGGTATTTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--AC-CGTTGAGGTA-TTTT
*** * *
77233961 CAATTTCTG------TT-TG--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
62 CAATTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGA-AC-C-
** * * * **
77234017 GGTCACACGCTGAGGTGTTTTCAACTTCTGTTTT
124 --TCACATACTGAGGTATTTTCAATTTCTGATCA
* * * * *
77234051 TCAAAAAAATCAACTCATGTTACAAGAGGTAAGTTGAGCCTCAGGACACGTTGAGGTAGTTTT-A
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CGTTGAGGTA-TTTTCA
* ** * *
77234115 ATTAATGTTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATT
64 A-T--T-TCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATT
77234160 ACGAGAAATG
Statistics
Matches: 351, Mismatches: 40, Indels: 51
0.79 0.09 0.12
Matches are distributed among these distances:
150 34 0.10
151 1 0.00
152 18 0.05
153 21 0.06
154 2 0.01
155 109 0.31
156 47 0.13
158 14 0.04
159 63 0.18
160 2 0.01
161 19 0.05
162 2 0.01
163 2 0.01
165 17 0.05
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (155 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCGTTGAGGTATTTTCAAT
TTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCACATA
CTGAGGTATTTTCAATTTCTGATCA
Found at i:77234056 original size:77 final size:78
Alignment explanation
Indices: 77233812--77234117 Score: 411
Period size: 78 Copynumber: 4.1 Consensus size: 78
77233802 CAATTTCTGC
* * *
77233812 TCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-C-C---TCACAT
1 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
77233870 GCTGAGGT-GTTT
66 GCTGAGGTAGTTT
*
77233882 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACAC
1 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
*
77233947 GCTGAGGTATTTT
66 GCTGAGGTAGTTT
77233960 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
1 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
77234025 GCTGAGGT-GTTT
66 GCTGAGGTAGTTT
* * * * * * *
77234037 TCAACTTCTGTTTTTCAAAAAAATCAACTCATGTTACAAGAGGTAAGTTGAGCCTCAGG--ACAC
1 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
*
77234100 GTTGAGGTAGTTT
66 GCTGAGGTAGTTT
77234113 T-AATT
1 TCAATT
77234118 AATGTTTTTT
Statistics
Matches: 212, Mismatches: 15, Indels: 13
0.88 0.06 0.05
Matches are distributed among these distances:
70 14 0.07
72 34 0.16
73 1 0.00
74 1 0.00
75 14 0.07
76 5 0.02
77 68 0.32
78 75 0.35
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (78 bp):
TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
GCTGAGGTAGTTT
Found at i:77234252 original size:87 final size:88
Alignment explanation
Indices: 77234138--77234370 Score: 258
Period size: 87 Copynumber: 2.7 Consensus size: 88
77234128 CAATTTATGC
* * * * *
77234138 TTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCACATACCGAGGTATTTT
1 TTTTAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGATCACATGCCGAGCTATTTT
*
77234203 CAAAATCTGTTTTACAAAT-T-TTG
66 CAAAATCTGTTTT--AAATGTCTAG
* * * * *
77234226 TTTTAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
1 TTTTAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGATCACATGCCGAGCTATTTT
** * *
77234290 CAATTTTTGTTTTTAATGTCTAG
66 CAAAATCTGTTTTAAATGTCTAG
* *
77234313 TTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAG-CTCAGGATCACATGCCGAG
1 TTTTAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGATCACATGCCGAG
77234371 TAAAGAATCA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
85 3 0.03
86 1 0.01
87 70 0.58
88 46 0.38
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (88 bp):
TTTTAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGATCACATGCCGAGCTATTTT
CAAAATCTGTTTTAAATGTCTAG
Found at i:77235042 original size:30 final size:30
Alignment explanation
Indices: 77235006--77235104 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
77234996 CTAGCCTTTG
77235006 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
77235036 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
77235066 CCACTACCTACTTCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
77235096 CCACCACCA
1 CCACCACCA
77235105 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:77235630 original size:24 final size:23
Alignment explanation
Indices: 77235582--77235633 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
77235572 TTTTTTTTGT
*
77235582 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
77235605 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
77235629 TATTA
1 TATTA
77235634 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:77235687 original size:25 final size:25
Alignment explanation
Indices: 77235659--77235787 Score: 95
Period size: 25 Copynumber: 5.2 Consensus size: 25
77235649 CTATATTACG
*
77235659 TATATATATTATACTATTTTATGTA
1 TATATATATTATACTATATTATGTA
* *
77235684 TATATCT-TTAATACTATATTATTTA
1 TATATATATT-ATACTATATTATGTA
** *
77235709 TATATATATTACATGTTATCTTATGTA
1 TATATATATT--ATACTATATTATGTA
*
77235736 TATAT-T-TTA-ATTATATTATGTA
1 TATATATATTATACTATATTATGTA
* * * *
77235758 TGTATTTTTTACACTATATTATGTA
1 TATATATATTATACTATATTATGTA
*
77235783 CATAT
1 TATAT
77235788 TTTTAATATT
Statistics
Matches: 83, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
22 15 0.18
23 2 0.02
24 5 0.06
25 42 0.51
26 3 0.04
27 16 0.19
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATATATTATACTATATTATGTA
Found at i:77235798 original size:20 final size:20
Alignment explanation
Indices: 77235773--77235831 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
77235763 TTTTTACACT
77235773 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
77235793 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
77235816 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
77235832 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:77235970 original size:16 final size:15
Alignment explanation
Indices: 77235946--77235980 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
77235936 TAATTATTAT
77235946 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
77235962 TATTTTAATATTTTA
1 TATTCTAATATTTTA
77235977 TATT
1 TATT
77235981 AATCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:77239347 original size:28 final size:27
Alignment explanation
Indices: 77239311--77239364 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
77239301 TAATTTTTGT
77239311 AATTAATAT-TTTATTAAATAAATTTATA
1 AATTAATATATTT-TT-AATAAATTTATA
*
77239339 AATTCATATATTTTTAATAAATTTAT
1 AATTAATATATTTTTAATAAATTTAT
77239365 GAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 11 0.46
28 10 0.42
29 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (27 bp):
AATTAATATATTTTTAATAAATTTATA
Found at i:77250603 original size:44 final size:44
Alignment explanation
Indices: 77250510--77250624 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 44
77250500 ACAGGACAGA
* * *
77250510 ACAGAAATGAGCCATGTAAGTCCAGATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCC--ATAAGAAATATGGCATTGGAG
* * *
77250556 ACAGGATTGAGCCATGTAAGTCCATAATATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATAAGAAATATGGCATTGGAG
* **
77250600 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
77250625 GTCAAAGACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 38 0.64
46 21 0.36
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATAAGAAATATGGCATTGGAG
Found at i:77261672 original size:26 final size:25
Alignment explanation
Indices: 77261627--77261687 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
77261617 TGAAACAGTA
* *
77261627 AAAGAAATATATTAACAAATAATAT
1 AAAGATATATATTAACAAATAACAT
77261652 AAAGATATATATATATA-AAATAACAT
1 AAAGATATATAT-TA-ACAAATAACAT
77261678 AGAA-ATATAT
1 A-AAGATATAT
77261688 GAATAGTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 11 0.35
26 17 0.55
27 3 0.10
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (25 bp):
AAAGATATATATTAACAAATAACAT
Found at i:77262740 original size:24 final size:24
Alignment explanation
Indices: 77262689--77262742 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
77262679 AAAAAAATTC
* **
77262689 TATTTTTTTGTTTATTATTTTTGT
1 TATTTTTATGTTTATTATTTTACT
77262713 TATTTTTAT-TTTATTATTTTACT
1 TATTTTTATGTTTATTATTTTACT
77262736 ATATTTT
1 -TATTTT
77262743 AATATGTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.76
Consensus pattern (24 bp):
TATTTTTATGTTTATTATTTTACT
Found at i:77267987 original size:55 final size:56
Alignment explanation
Indices: 77267922--77268036 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
77267912 AGCATGGCTG
* * *
77267922 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
77267978 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
77268033 CCAG
1 CCAG
77268037 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:77268033 original size:28 final size:27
Alignment explanation
Indices: 77267947--77268036 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
77267937 GTGACAGAGT
*
77267947 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
77267976 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
77268003 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
77268031 CACCAG
1 CACCAG
77268037 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:77268189 original size:28 final size:28
Alignment explanation
Indices: 77268142--77268206 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
77268132 AAATTAACCC
*
77268142 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
77268170 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
77268198 TAGGGGTAT
1 TAGGGGTAT
77268207 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:77275825 original size:55 final size:56
Alignment explanation
Indices: 77275760--77275874 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
77275750 AGCATGGCTG
* * *
77275760 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
77275816 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
77275871 CCAG
1 CCAG
77275875 GACGCTTCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:77275871 original size:28 final size:27
Alignment explanation
Indices: 77275785--77275874 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
77275775 GTGACAGAGT
*
77275785 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
77275814 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
77275841 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
77275869 CACCAG
1 CACCAG
77275875 GACGCTTCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:77276027 original size:28 final size:28
Alignment explanation
Indices: 77275980--77276044 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
77275970 AAATTAACCC
*
77275980 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
77276008 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
77276036 TAGGGGTAT
1 TAGGGGTAT
77276045 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:77280450 original size:77 final size:78
Alignment explanation
Indices: 77280356--77280505 Score: 223
Period size: 77 Copynumber: 1.9 Consensus size: 78
77280346 TTTTTATCCC
* * *
77280356 AATTTAAATCATCAATTAATTTTTTCAAATATAGATTGA-AAATAAT-AATAATTATATGCTAAG
1 AATTTAAATCATCAATTAA-TTTTTCAAAAATAGATCGACAAAAAATAAATAATTATATGCTAAG
*
77280419 TGAATTTTAATTAT
65 TCAATTTTAATTAT
* *
77280433 AATTTAAATCATTAATTAATTTTTCAAAAATAGATCGACAAAAAATAAATTATTATATGCTAAGT
1 AATTTAAATCATCAATTAATTTTTCAAAAATAGATCGACAAAAAATAAATAATTATATGCTAAGT
77280498 CAATTTTA
66 CAATTTTA
77280506 CGTCAGTTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
76 17 0.26
77 24 0.37
78 24 0.37
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.41
Consensus pattern (78 bp):
AATTTAAATCATCAATTAATTTTTCAAAAATAGATCGACAAAAAATAAATAATTATATGCTAAGT
CAATTTTAATTAT
Found at i:77280955 original size:31 final size:29
Alignment explanation
Indices: 77280901--77280964 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 29
77280891 TCAAAATTTT
77280901 ATGTATAAAATTGTACTAAATTAAAATTC
1 ATGTATAAAATTGTACTAAATTAAAATTC
* * *
77280930 ATGTATACAATTGCATATTAAATTAAATTTC
1 ATGTATAAAATTG--TACTAAATTAAAATTC
77280961 ATGT
1 ATGT
77280965 GTAATTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 12 0.40
31 18 0.60
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (29 bp):
ATGTATAAAATTGTACTAAATTAAAATTC
Found at i:77282224 original size:27 final size:27
Alignment explanation
Indices: 77282194--77282245 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
77282184 TGAGGTTTCA
*
77282194 AAGAGTTCAAAACCATGGCAATTTTTG
1 AAGACTTCAAAACCATGGCAATTTTTG
*
77282221 AAGACTTCAAAGCCATGGCAATTTT
1 AAGACTTCAAAACCATGGCAATTTT
77282246 GGATGGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
AAGACTTCAAAACCATGGCAATTTTTG
Found at i:77285771 original size:22 final size:21
Alignment explanation
Indices: 77285746--77285799 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
77285736 ATATATTAGG
77285746 GTATATTTTTATGTACATATA
1 GTATATTTTTATGTACATATA
* * *
77285767 TGTATATATATATTTACATATA
1 -GTATATTTTTATGTACATATA
77285789 GTATTATTTTT
1 GTA-TATTTTT
77285800 TATTACTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (21 bp):
GTATATTTTTATGTACATATA
Found at i:77285911 original size:16 final size:16
Alignment explanation
Indices: 77285890--77285923 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
77285880 TGTATTTTCA
77285890 TTATATATA-TATATAT
1 TTATATATAGTAT-TAT
77285906 TTATATATAGTATTAT
1 TTATATATAGTATTAT
77285922 TT
1 TT
77285924 TTATTTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTATATATAGTATTAT
Found at i:77286021 original size:19 final size:19
Alignment explanation
Indices: 77285997--77286065 Score: 52
Period size: 19 Copynumber: 3.4 Consensus size: 19
77285987 ATTATGACTA
77285997 TTATTATATTTTTATTTTC
1 TTATTATATTTTTATTTTC
77286016 TTATTACTCATTTATTATGATTT-
1 TTATTA-T-ATTT-TTAT--TTTC
* *
77286039 TTA-TCTATTTATATTTTC
1 TTATTATATTTTTATTTTC
77286057 ATTATTATA
1 -TTATTATA
77286066 CTATATCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 15
0.68 0.05 0.26
Matches are distributed among these distances:
17 3 0.08
19 12 0.31
20 8 0.21
21 5 0.13
22 5 0.13
23 3 0.08
24 3 0.08
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.65
Consensus pattern (19 bp):
TTATTATATTTTTATTTTC
Found at i:77286021 original size:42 final size:42
Alignment explanation
Indices: 77285973--77286063 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
77285963 TATTGTAATT
*
77285973 ATTATTAC-CATTGTATTATGACTATTATTATATTTTTATTTTC
1 ATTATTACTCATT-TATTATGACTATTA-TATATTTATATTTTC
* * *
77286016 -TTATTACTCATTTATTATGATTTTTATCTATTTATATTTTC
1 ATTATTACTCATTTATTATGACTATTATATATTTATATTTTC
77286057 ATTATTA
1 ATTATTA
77286064 TACTATATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
41 13 0.31
42 25 0.60
43 4 0.10
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.60
Consensus pattern (42 bp):
ATTATTACTCATTTATTATGACTATTATATATTTATATTTTC
Found at i:77286094 original size:27 final size:28
Alignment explanation
Indices: 77286040--77286105 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
77286030 TTATGATTTT
* *
77286040 TATCTATTTATATTTTCATTATTATACTA
1 TATCTA-TTATATATTCAGTATTATACTA
*
77286069 TATCTATTATATATT-AGTATTTTACTA
1 TATCTATTATATATTCAGTATTATACTA
77286096 T-TACTATTAT
1 TAT-CTATTAT
77286106 TATAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.03
27 18 0.55
28 8 0.24
29 6 0.18
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.58
Consensus pattern (28 bp):
TATCTATTATATATTCAGTATTATACTA
Found at i:77292510 original size:21 final size:22
Alignment explanation
Indices: 77292481--77292521 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
77292471 ACAATGTTTA
*
77292481 AAAAATTTAT-TAAAATTTTTT
1 AAAAATTTATACAAAATTTTTT
*
77292502 AAAATTTTATACAAAATTTT
1 AAAAATTTATACAAAATTTT
77292522 GAAAACAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAAATTTATACAAAATTTTTT
Found at i:77292730 original size:18 final size:17
Alignment explanation
Indices: 77292698--77292731 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
77292688 AATTGTCTAA
*
77292698 AAATATTTTTAAAAATT
1 AAATATTTATAAAAATT
77292715 AAATACTTTATAAAAAT
1 AAATA-TTTATAAAAAT
77292732 ATTTAAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATTTATAAAAATT
Found at i:77293027 original size:23 final size:24
Alignment explanation
Indices: 77292998--77293043 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
77292988 AAATAGAAGA
*
77292998 TATTATTTTGTTTTATT-ATTTAT
1 TATTATTTTATTTTATTAATTTAT
77293021 TATTATTTTATTTTATTAATTTA
1 TATTATTTTATTTTATTAATTTA
77293044 GGATTAAGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (24 bp):
TATTATTTTATTTTATTAATTTAT
Found at i:77295631 original size:49 final size:49
Alignment explanation
Indices: 77295559--77295742 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 49
77295549 CGAAGCTATC
*
77295559 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
* * * * * * *
77295608 TGGTACACGTAGTAACCTACACTTAGTACTACACACGTGATC-ATAGTTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA-ATT
* * *
77295657 TCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 T-G-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
* * *
77295708 CGGTATACGTAGTAGCCTGCACTTAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
77295743 CGTGACCTCA
Statistics
Matches: 109, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 3 0.03
49 68 0.62
50 2 0.02
51 34 0.31
52 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
Found at i:77295678 original size:100 final size:100
Alignment explanation
Indices: 77295561--77295747 Score: 320
Period size: 100 Copynumber: 1.9 Consensus size: 100
77295551 AAGCTATCTG
**
77295561 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACGTAGTAACCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAACCT
77295626 ACACTTAGTACTACACACGTGATCATAGTTTTCGA
66 ACACTTAGTACTACACACGTGATCATAGTTTTCGA
* * *
77295661 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTATACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAACCT
*
77295726 GCACTTAGTACTACACACGTGA
66 ACACTTAGTACTACACACGTGA
77295748 CCTCACAATA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAACCT
ACACTTAGTACTACACACGTGATCATAGTTTTCGA
Found at i:77300536 original size:15 final size:16
Alignment explanation
Indices: 77300518--77300563 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
77300508 AGAAAATAAA
77300518 AAAATAAA-AAAATAT
1 AAAATAAATAAAATAT
*
77300533 AAAATATAATAATATAT
1 AAAATA-AATAAAATAT
*
77300550 ATAATAAATAAAAT
1 AAAATAAATAAAAT
77300564 TTAAGACAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 6 0.23
16 9 0.35
17 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAAATAAAATAT
Found at i:77307587 original size:21 final size:21
Alignment explanation
Indices: 77307563--77307614 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
77307553 AACTGAGTTA
77307563 GACAAAAAGAGAAGCAACTTG
1 GACAAAAAGAGAAGCAACTTG
* *
77307584 GACAAAAAGAGAAGTAATTTG
1 GACAAAAAGAGAAGCAACTTG
77307605 GACAAAAAGA
1 GACAAAAAGA
77307615 AACGAAGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.56, C:0.10, G:0.23, T:0.12
Consensus pattern (21 bp):
GACAAAAAGAGAAGCAACTTG
Found at i:77310987 original size:28 final size:28
Alignment explanation
Indices: 77310945--77311000 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
77310935 TACAGTAAGT
77310945 TAGGACACGACATCTCGAACTTTTGAGA
1 TAGGACACGACATCTCGAACTTTTGAGA
*
77310973 TAGGACACGATATCTCGAACTTTTGAGA
1 TAGGACACGACATCTCGAACTTTTGAGA
77311001 ATGAGCTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (28 bp):
TAGGACACGACATCTCGAACTTTTGAGA
Found at i:77311826 original size:23 final size:23
Alignment explanation
Indices: 77311782--77311827 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77311772 AATAATACTA
* *
77311782 TAGTAATAATGATAATAAAAAAT
1 TAGTAATAATGAAAAAAAAAAAT
*
77311805 TAGTAATAATAAAAAAATAAAAA
1 TAGTAATAATGAAAAAA-AAAAA
77311828 AATATAATGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (23 bp):
TAGTAATAATGAAAAAAAAAAAT
Found at i:77311872 original size:3 final size:3
Alignment explanation
Indices: 77311858--77312173 Score: 121
Period size: 3 Copynumber: 102.3 Consensus size: 3
77311848 TATAAAATGT
* *
77311858 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA GGAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * * ** * * * *
77311903 TAA AAA CAA TAG TAA CGA TAA GAG TAT TAA TAA TAA CAA TAA T-A TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * *
77311951 TAA TAA TATA TACGT TAA TAA T-A TAC TAA TAA GAA TAA TAA TAGGT
1 TAA TAA TA-A TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA--A
* **
77311997 TAA TAA TAA GAGGA GGA -AA TACA TGAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA--A TAA TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA
* * *
77312045 TAA TAA T-A TAAA GAA TAGGA -AA TAA TAA T-A TAC TAA TAA GAA TAA
1 TAA TAA TAA T-AA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* ** * * *
77312090 TAA TAGGT TAA TAA TAA TAGGA GGA -AA CAG TAA TAA T-A TAT TAA TAA
1 TAA TA--A TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA
** *
77312137 GGA TACA -AA TAA TGA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
77312174 GGTAAAATAG
Statistics
Matches: 232, Mismatches: 53, Indels: 56
0.68 0.16 0.16
Matches are distributed among these distances:
2 16 0.07
3 191 0.82
4 14 0.06
5 11 0.05
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:77313557 original size:16 final size:17
Alignment explanation
Indices: 77313518--77313558 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
77313508 ATAATAAAAA
77313518 TATAATTTTATTATTTT
1 TATAATTTTATTATTTT
*
77313535 AAT-ATTTTA-TATTTT
1 TATAATTTTATTATTTT
77313550 TATAATTTT
1 TATAATTTT
77313559 TAAAAGATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 8 0.38
16 11 0.52
17 2 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATAATTTTATTATTTT
Found at i:77313612 original size:31 final size:30
Alignment explanation
Indices: 77313542--77313612 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 30
77313532 TTTAATATTT
* * * * *
77313542 TATATTTTTATAATTTTTAAAAGATTAGAT
1 TATAATTTTACAATTTTTAAAAGATGAAAA
77313572 TA-AACTTTTACAATTTTTAAGAAGATGAAAA
1 TATAA-TTTTACAATTTTTAA-AAGATGAAAA
77313603 TATAATTTTA
1 TATAATTTTA
77313613 TTTTTATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
29 1 0.03
30 16 0.48
31 14 0.42
32 2 0.06
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (30 bp):
TATAATTTTACAATTTTTAAAAGATGAAAA
Found at i:77317530 original size:21 final size:21
Alignment explanation
Indices: 77317484--77317545 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
77317474 TAATATTAAT
* *
77317484 ATTTT-AAATATTTAATTAAAA
1 ATTTTAAAATATTAAATT-ATA
77317505 TATTTTAAAAT-TTGAAATTATA
1 -ATTTTAAAATATT-AAATTATA
77317527 ATTTTAAAATATTAAATTA
1 ATTTTAAAATATTAAATTA
77317546 ATTCCAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
21 16 0.46
22 11 0.31
23 8 0.23
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTTTAAAATATTAAATTATA
Found at i:77319039 original size:19 final size:20
Alignment explanation
Indices: 77319015--77319060 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
77319005 AATTTATGGG
* *
77319015 TTTTTTTTTCATTTTTAGGAA
1 TTTTTTTAT-ATTTTAAGGAA
77319036 TTTTTTTATATTTTAAAGGAA
1 TTTTTTTATATTTT-AAGGAA
77319057 TTTT
1 TTTT
77319061 GAGTTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.65
Consensus pattern (20 bp):
TTTTTTTATATTTTAAGGAA
Found at i:77319293 original size:28 final size:26
Alignment explanation
Indices: 77319228--77319293 Score: 62
Period size: 28 Copynumber: 2.4 Consensus size: 26
77319218 TAATATATTT
* *
77319228 TTTTAGTTTTTTGATAATTTTCTAAG
1 TTTTAGTTTTTTGAGAATTTTATAAG
*
77319254 TTTTAATATTTTTGAGGAATTTTAATATA-
1 TTTTAGT-TTTTTGA-GAATTTT-ATA-AG
77319283 TTTTAGTTTTT
1 TTTTAGTTTTT
77319294 CTCATATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
26 6 0.19
27 7 0.22
28 10 0.31
29 8 0.25
30 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.62
Consensus pattern (26 bp):
TTTTAGTTTTTTGAGAATTTTATAAG
Found at i:77328524 original size:29 final size:29
Alignment explanation
Indices: 77328476--77328535 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
77328466 TCTAGTTTTA
*
77328476 AATTGATATTAATTAATTTAAATTTCATT
1 AATTGATATTAAGTAATTTAAATTTCATT
* *
77328505 AATTGATATTAAGTAGTTTAAATTTTATT
1 AATTGATATTAAGTAATTTAAATTTCATT
77328534 AA
1 AA
77328536 GTCAAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (29 bp):
AATTGATATTAAGTAATTTAAATTTCATT
Found at i:77333544 original size:20 final size:18
Alignment explanation
Indices: 77333514--77333558 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
77333504 TATTTTTAAT
77333514 TTAATTTTTTCTCCTTTTG
1 TTAATTTTTTCT-CTTTTG
77333533 TTAATCTTTTTCTCTTTT-
1 TTAAT-TTTTTCTCTTTTG
77333551 TT-ATTTTT
1 TTAATTTTT
77333559 GGGAAAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.16
17 2 0.08
18 2 0.08
19 10 0.40
20 7 0.28
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.73
Consensus pattern (18 bp):
TTAATTTTTTCTCTTTTG
Found at i:77338794 original size:13 final size:13
Alignment explanation
Indices: 77338749--77338792 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 13
77338739 TTAACTGTTA
*
77338749 AAAATTTTATATG
1 AAAATTTTAAATG
77338762 ACATAATTTTAAATG
1 A-A-AATTTTAAATG
77338777 AAAATTTTAAA-G
1 AAAATTTTAAATG
77338789 AAAA
1 AAAA
77338793 ATAAGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 5 0.18
13 10 0.36
14 2 0.07
15 11 0.39
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (13 bp):
AAAATTTTAAATG
Found at i:77338809 original size:15 final size:16
Alignment explanation
Indices: 77338789--77338825 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
77338779 AATTTTAAAG
77338789 AAAAATAAG-TATTAT
1 AAAAATAAGATATTAT
*
77338804 AAAAAT-AGATGTTAT
1 AAAAATAAGATATTAT
77338819 AAAAATA
1 AAAAATA
77338826 TTGGTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (16 bp):
AAAAATAAGATATTAT
Found at i:77341900 original size:31 final size:31
Alignment explanation
Indices: 77341865--77341925 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
77341855 CAATCTAAAG
*
77341865 ACTTAATTAAAAACCCTCAAATAATTTAATA
1 ACTTAAATAAAAACCCTCAAATAATTTAATA
* ** *
77341896 ACTTAAATGAAAACTTTCTAATAATTTAAT
1 ACTTAAATAAAAACCCTCAAATAATTTAAT
77341926 GACCAAAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (31 bp):
ACTTAAATAAAAACCCTCAAATAATTTAATA
Found at i:77341935 original size:31 final size:31
Alignment explanation
Indices: 77341884--77341942 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
77341874 AAAACCCTCA
**
77341884 AATAATTTAATAACTTAAATGAAAACTTTCT
1 AATAATTTAATAACCAAAATGAAAACTTTCT
* *
77341915 AATAATTTAATGACCAAAATGTAAACTT
1 AATAATTTAATAACCAAAATGAAAACTT
77341943 ACTTAACATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (31 bp):
AATAATTTAATAACCAAAATGAAAACTTTCT
Found at i:77342801 original size:21 final size:21
Alignment explanation
Indices: 77342777--77342816 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
77342767 TACGAACGCT
*
77342777 AAACCTGAAACCCTGAACCTC
1 AAACCTCAAACCCTGAACCTC
* *
77342798 AAACTTCAAACTCTGAACC
1 AAACCTCAAACCCTGAACC
77342817 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.35, G:0.07, T:0.17
Consensus pattern (21 bp):
AAACCTCAAACCCTGAACCTC
Found at i:77343538 original size:19 final size:20
Alignment explanation
Indices: 77343503--77343541 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
77343493 AAAAAGATAT
*
77343503 TCAAAATAATTAATAAAAAA
1 TCAAAATAATAAATAAAAAA
77343523 TCAAAA-AATAAATAAAAAA
1 TCAAAATAATAAATAAAAAA
77343542 CCTATCATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
TCAAAATAATAAATAAAAAA
Found at i:77353682 original size:37 final size:35
Alignment explanation
Indices: 77353641--77353810 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
77353631 TAGTATTATA
*
77353641 TATTATGATTTTAGTAAATTCATATAAGAATATTGAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
77353678 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
77353711 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
77353748 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
77353785 TATTAAGAATTTTATTAAATTATATA
1 TATTATG-ATTTTAGTAAATTATATA
77353811 TTTTAATTAT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 11 0.11
34 6 0.06
35 9 0.09
36 8 0.08
37 30 0.30
38 28 0.28
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:77353708 original size:120 final size:113
Alignment explanation
Indices: 77353565--77353841 Score: 359
Period size: 107 Copynumber: 2.4 Consensus size: 113
77353555 AATTATTTTA
* * *
77353565 AATTTTATTAAATCATATATTTTAATTAGAATATATTTTATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTTATA-TAATTA-TT--AA-T-TATGTT
* * *
77353630 ATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
60 AAAGTA-TATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
77353685 AATTTTATTAAATTATATATTTTAATTATAATATA-TTTA-AT-A--A-TAATTATGTTAAATTA
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTTATATAATTATTAATTATGTTAAAGTA
*
77353744 TCTATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 TATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
77353792 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTTAT-ATAATTAT
77353842 GTTTAAATAT
Statistics
Matches: 141, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
107 80 0.57
108 12 0.09
109 1 0.01
110 4 0.03
111 1 0.01
112 1 0.01
113 1 0.01
114 1 0.01
116 1 0.01
117 1 0.01
118 1 0.01
119 4 0.03
120 33 0.23
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (113 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTTATATAATTATTAATTATGTTAAAGTA
TATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:77353720 original size:16 final size:16
Alignment explanation
Indices: 77353699--77353744 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
77353689 TTATTAAATT
77353699 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
77353715 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
77353730 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
77353745 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:77353755 original size:107 final size:108
Alignment explanation
Indices: 77353639--77353849 Score: 397
Period size: 107 Copynumber: 2.0 Consensus size: 108
77353629 TATAGTATTA
* *
77353639 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
77353704 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
77353746 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
77353811 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
77353850 ATGATTAAAT
Statistics
Matches: 101, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 95 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:77353827 original size:16 final size:16
Alignment explanation
Indices: 77353806--77353847 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
77353796 TTATTAAATT
*
77353806 ATATATTTTAATTATA
1 ATATATTTTAATAATA
77353822 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
77353837 AT-TATGTTTAA
1 ATATAT-TTTAA
77353848 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:77353832 original size:15 final size:15
Alignment explanation
Indices: 77353797--77353838 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
77353787 TTAAGAATTT
*
77353797 TATTAAATTAT-ATA
1 TATTTAATTATAATA
77353811 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
77353825 TATTTAATAATAAT
1 TATTTAATTATAAT
77353839 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:77354075 original size:45 final size:44
Alignment explanation
Indices: 77353992--77354082 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
77353982 ACCTCTATTC
* *
77353992 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
*** *
77354036 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCATTA
77354081 CA
1 CA
77354083 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
Found at i:77354112 original size:16 final size:16
Alignment explanation
Indices: 77354063--77354114 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
77354053 GATTTGCTAT
* *
77354063 TACACATCTATTCCAT
1 TACACATCTAATCCAA
*
77354079 TACACCTCTAATCCAA
1 TACACATCTAATCCAA
*
77354095 TACACATCTAATCTAA
1 TACACATCTAATCCAA
77354111 TACA
1 TACA
77354115 GCGAACCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACATCTAATCCAA
Found at i:77357063 original size:22 final size:22
Alignment explanation
Indices: 77357018--77357059 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
77357008 AAATTTTGTA
77357018 TTTTTAATTTTCAGAATTTAAT
1 TTTTTAATTTTCAGAATTTAAT
* *
77357040 TTTTTCATTTTTA-AATTTAA
1 TTTTTAATTTTCAGAATTTAA
77357060 ATTTAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (22 bp):
TTTTTAATTTTCAGAATTTAAT
Found at i:77357377 original size:29 final size:29
Alignment explanation
Indices: 77357316--77357386 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
77357306 ACTCTTGAAA
* *
77357316 ATTTAGAAATTTAATTTTTGTACTTTTAT
1 ATTTAAAAATTTAATTTTTGTACTTTTAG
*
77357345 ATTTAAAAATTTAATTTTT-TATTTTTCAG
1 ATTTAAAAATTTAATTTTTGTACTTTT-AG
* *
77357374 ATTTCAAAGTTTA
1 ATTTAAAAATTTA
77357387 GATCCAGTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 6 0.17
29 30 0.83
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (29 bp):
ATTTAAAAATTTAATTTTTGTACTTTTAG
Found at i:77357592 original size:2 final size:2
Alignment explanation
Indices: 77357585--77357621 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
77357575 ATCCCTTCCA
77357585 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
77357622 ACACACACAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:77372900 original size:3 final size:3
Alignment explanation
Indices: 77372892--77372916 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
77372882 TTTTAAATAG
77372892 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
77372917 TGCAAAACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:77378300 original size:15 final size:15
Alignment explanation
Indices: 77378282--77378358 Score: 52
Period size: 14 Copynumber: 5.2 Consensus size: 15
77378272 TAAAATTTTA
77378282 ATAAATAAAAAATAT
1 ATAAATAAAAAATAT
* **
77378297 ATAATTATTAAATAT
1 ATAAATAAAAAATAT
*
77378312 -TAAATTAAAAAT-T
1 ATAAATAAAAAATAT
* *
77378325 AAAAATTAAAAAT-T
1 ATAAATAAAAAATAT
*
77378339 AAAAATAATATAAATAT
1 ATAAATAA-A-AAATAT
77378356 ATA
1 ATA
77378359 TTTTATTTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
13 1 0.02
14 27 0.56
15 13 0.27
16 4 0.08
17 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAAATAAAAAATAT
Found at i:77378312 original size:7 final size:7
Alignment explanation
Indices: 77378313--77378344 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
77378303 ATTAAATATT
77378313 AAATTAA
1 AAATTAA
77378320 AAATTAA
1 AAATTAA
77378327 AAATTAA
1 AAATTAA
77378334 AAATTAA
1 AAATTAA
77378341 AAAT
1 AAAT
77378345 AATATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAATTAA
Found at i:77379034 original size:24 final size:24
Alignment explanation
Indices: 77379007--77379058 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
77378997 TTAGTAAGTC
*
77379007 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
*
77379031 AAATAAATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
77379055 AAAT
1 AAAT
77379059 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:77384084 original size:23 final size:24
Alignment explanation
Indices: 77384039--77384086 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
77384029 AAATTTTAAA
77384039 ATTATATTATAAAAAATAAATTTAT
1 ATTATATTATAAAAAAT-AATTTAT
*
77384064 ATTAT-TTCATAAAAAATATTTTA
1 ATTATATT-ATAAAAAATAATTTA
77384087 AAATTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTATATTATAAAAAATAATTTAT
Found at i:77385941 original size:12 final size:12
Alignment explanation
Indices: 77385920--77385962 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
77385910 AATTCTAATG
*
77385920 TTAAACAAAATT
1 TTAAAAAAAATT
77385932 TTAAAAAAAATTATT
1 TT-AAAAAAA--ATT
77385947 TTAAAAAAAATT
1 TTAAAAAAAATT
77385959 TTAA
1 TTAA
77385963 TATTAATCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 6 0.22
14 7 0.26
15 5 0.19
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
TTAAAAAAAATT
Found at i:77385949 original size:15 final size:15
Alignment explanation
Indices: 77385929--77385958 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77385919 GTTAAACAAA
77385929 ATTTTAAAAAAAATT
1 ATTTTAAAAAAAATT
77385944 ATTTTAAAAAAAATT
1 ATTTTAAAAAAAATT
77385959 TTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTTAAAAAAAATT
Found at i:77389924 original size:37 final size:35
Alignment explanation
Indices: 77389883--77390052 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
77389873 TAGTATTATA
*
77389883 TATTATGATTTTAGTAAATTCATATAAGAATATTGAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
77389920 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
77389953 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
77389990 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
77390027 TATTAAGAATTTTATTAAATTATATA
1 TATTATG-ATTTTAGTAAATTATATA
77390053 TTTTAATTAT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 11 0.11
34 6 0.06
35 9 0.09
36 8 0.08
37 30 0.30
38 28 0.28
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:77389950 original size:120 final size:113
Alignment explanation
Indices: 77389807--77390083 Score: 359
Period size: 107 Copynumber: 2.4 Consensus size: 113
77389797 AATTATTTTA
* * *
77389807 AATTTTATTAAATCATATATTTTAATTAGAATATATTTTATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTTATA-TAATTA-TT--AA-T-TATGTT
* * *
77389872 ATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
60 AAAGTA-TATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
77389927 AATTTTATTAAATTATATATTTTAATTATAATATA-TTTA-AT-A--A-TAATTATGTTAAATTA
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTTATATAATTATTAATTATGTTAAAGTA
*
77389986 TCTATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 TATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
77390034 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTTAT-ATAATTAT
77390084 GTTTAAATAT
Statistics
Matches: 141, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
107 80 0.57
108 12 0.09
109 1 0.01
110 4 0.03
111 1 0.01
112 1 0.01
113 1 0.01
114 1 0.01
116 1 0.01
117 1 0.01
118 1 0.01
119 4 0.03
120 33 0.23
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (113 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTTATATAATTATTAATTATGTTAAAGTA
TATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:77389962 original size:16 final size:16
Alignment explanation
Indices: 77389941--77389986 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
77389931 TTATTAAATT
77389941 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
77389957 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
77389972 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
77389987 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:77389997 original size:107 final size:108
Alignment explanation
Indices: 77389881--77390091 Score: 397
Period size: 107 Copynumber: 2.0 Consensus size: 108
77389871 TATAGTATTA
* *
77389881 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
77389946 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
77389988 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
77390053 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
77390092 ATGATTAAAT
Statistics
Matches: 101, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 95 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:77390069 original size:16 final size:16
Alignment explanation
Indices: 77390048--77390089 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
77390038 TTATTAAATT
*
77390048 ATATATTTTAATTATA
1 ATATATTTTAATAATA
77390064 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
77390079 AT-TATGTTTAA
1 ATATAT-TTTAA
77390090 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:77390074 original size:15 final size:15
Alignment explanation
Indices: 77390039--77390080 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
77390029 TTAAGAATTT
*
77390039 TATTAAATTAT-ATA
1 TATTTAATTATAATA
77390053 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
77390067 TATTTAATAATAAT
1 TATTTAATTATAAT
77390081 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:77390317 original size:45 final size:44
Alignment explanation
Indices: 77390234--77390324 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
77390224 ACCTCTATTC
* *
77390234 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
*** *
77390278 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCATTA
77390323 CA
1 CA
77390325 CCTCTATTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
Found at i:77390324 original size:16 final size:16
Alignment explanation
Indices: 77390303--77390362 Score: 75
Period size: 16 Copynumber: 3.8 Consensus size: 16
77390293 TTGATTTGCT
77390303 ATTACACATCTATTCC
1 ATTACACATCTATTCC
*
77390319 ATTACACCTCTATTCC
1 ATTACACATCTATTCC
* * *
77390335 ATTATACCTCTAATCC
1 ATTACACATCTATTCC
*
77390351 AATACACATCTA
1 ATTACACATCTA
77390363 ATCTAATACA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACATCTATTCC
Found at i:77390363 original size:16 final size:16
Alignment explanation
Indices: 77390305--77390372 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
77390295 GATTTGCTAT
* *
77390305 TACACATCTATTCCAT
1 TACACATCTAATCCAA
* * *
77390321 TACACCTCTATTCCAT
1 TACACATCTAATCCAA
* *
77390337 TATACCTCTAATCCAA
1 TACACATCTAATCCAA
*
77390353 TACACATCTAATCTAA
1 TACACATCTAATCCAA
77390369 TACA
1 TACA
77390373 GCGAACCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.34
Consensus pattern (16 bp):
TACACATCTAATCCAA
Found at i:77394358 original size:19 final size:21
Alignment explanation
Indices: 77394326--77394372 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
77394316 TTTTTATTTT
*
77394326 CTTCACCCCAACTC-GTTTCTC
1 CTTC-CCCCAACTCTCTTTCTC
*
77394347 CTTCCCCC-ACTCTCTTTCTT
1 CTTCCCCCAACTCTCTTTCTC
77394367 CTTCCC
1 CTTCCC
77394373 TCGATCTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 15 0.65
21 4 0.17
ACGTcount: A:0.09, C:0.51, G:0.02, T:0.38
Consensus pattern (21 bp):
CTTCCCCCAACTCTCTTTCTC
Found at i:77397568 original size:48 final size:48
Alignment explanation
Indices: 77397423--77397599 Score: 255
Period size: 48 Copynumber: 3.6 Consensus size: 48
77397413 TTGGATACAA
* *
77397423 ACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATCCAT
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGGCATCCAT
* *
77397471 ATAATGACAGATACAAACAATAAACAAACATCAGTTTGATAATGGCATCCAT
1 ACAATGGCAGATACAAACAAT----AAACATCAGTTTGATAATGGCATCCAT
*
77397523 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGACATCCAT
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGGCATCCAT
* *
77397571 ACAATGGCAGATAAAAACAATAAATATCA
1 ACAATGGCAGATACAAACAATAAACATCA
77397600 TGCACATGGC
Statistics
Matches: 116, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
48 70 0.60
52 46 0.40
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (48 bp):
ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGGCATCCAT
Found at i:77397660 original size:6 final size:6
Alignment explanation
Indices: 77397651--77397741 Score: 101
Period size: 6 Copynumber: 15.2 Consensus size: 6
77397641 AAATAACCCC
* * * *
77397651 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCT AAATCT AAAGCT
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* * * **
77397699 AAATCG AGATCG AAATTG AAATCA AAATCA AAATCA AAATCA A
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA A
77397742 TGAGTGTTTC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 76 1.00
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.20
Consensus pattern (6 bp):
AAATCA
Found at i:77397780 original size:24 final size:24
Alignment explanation
Indices: 77397753--77397828 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
77397743 GAGTGTTTCA
* *
77397753 AAATTGAAATCAAAATTGAAATAG
1 AAATCGAAATCAAAATTGAAATCG
*
77397777 AAATCGAAATCAAAA-TCAGAATCG
1 AAATCGAAATCAAAATTGA-AATCG
77397801 AAATCGAAATCAAAATTGAAATCG
1 AAATCGAAATCAAAATTGAAATCG
77397825 AAAT
1 AAAT
77397829 AACCCTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 2 0.04
24 42 0.91
25 2 0.04
ACGTcount: A:0.57, C:0.11, G:0.12, T:0.21
Consensus pattern (24 bp):
AAATCGAAATCAAAATTGAAATCG
Found at i:77397822 original size:6 final size:6
Alignment explanation
Indices: 77397651--77397828 Score: 76
Period size: 6 Copynumber: 29.7 Consensus size: 6
77397641 AAATAACCCC
* * * * * * * * *
77397651 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCT AAATCT AAAGCT
1 AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG
* * * * *
77397699 AAATCG AGATCG AAATTG AAATCA AAATCA AAATCA AAATC- -AAT-G
1 AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG
** * * * * * *
77397744 AGTGTTTCA AAATTG AAATCA AAATTG AAATAG AAATCG AAATCA AAATC-
1 A---AATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG
* *
77397794 AGAATCG AAATCG AAATCA AAATTG AAATCG AAAT
1 A-AATCG AAATCG AAATCG AAATCG AAATCG AAAT
77397829 AACCCTAAAT
Statistics
Matches: 137, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
4 3 0.02
5 1 0.01
6 130 0.95
7 1 0.01
8 1 0.01
9 1 0.01
ACGTcount: A:0.56, C:0.13, G:0.10, T:0.22
Consensus pattern (6 bp):
AAATCG
Found at i:77400760 original size:13 final size:13
Alignment explanation
Indices: 77400742--77400766 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77400732 CTGTTTCTTA
77400742 TTTTATTATAATT
1 TTTTATTATAATT
77400755 TTTTATTATAAT
1 TTTTATTATAAT
77400767 ATATTTCTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTATTATAATT
Found at i:77401292 original size:17 final size:17
Alignment explanation
Indices: 77401270--77401306 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
77401260 TCGTTTTTAT
* *
77401270 TTTAATTATTTTATTAA
1 TTTAATTAATTTAATAA
77401287 TTTAATTAATTTAATAA
1 TTTAATTAATTTAATAA
77401304 TTT
1 TTT
77401307 CAGTAATCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATTAATTTAATAA
Found at i:77402733 original size:13 final size:14
Alignment explanation
Indices: 77402705--77402738 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
77402695 GCAGATGAAT
77402705 ATATTATAATATTTG
1 ATATT-TAATATTTG
77402720 ATATTTAA-ATTTG
1 ATATTTAATATTTG
77402733 ATATTT
1 ATATTT
77402739 TTTCTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 3 0.16
15 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (14 bp):
ATATTTAATATTTG
Found at i:77403417 original size:17 final size:17
Alignment explanation
Indices: 77403361--77403422 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 17
77403351 TGAAAACCAC
*
77403361 AAATCTTAAATAAT--A
1 AAATCTAAAATAATCCA
*
77403376 AACTC-AAAATAATCCA
1 AAATCTAAAATAATCCA
* *
77403392 AACTTTAAAAATAAT-CA
1 AAATCT-AAAATAATCCA
77403409 AAATCTAAAATAAT
1 AAATCTAAAATAAT
77403423 TTAAACAGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 7 0.18
15 4 0.11
16 13 0.34
17 6 0.16
18 8 0.21
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATCTAAAATAATCCA
Found at i:77409322 original size:31 final size:30
Alignment explanation
Indices: 77409287--77409385 Score: 80
Period size: 31 Copynumber: 3.3 Consensus size: 30
77409277 GAACATTTGC
77409287 CAAGTTCAGGCCCCAATATGAGAACAATTAT
1 CAAGTTCAGGCCCCAAT-TGAGAACAATTAT
** * *
77409318 CAAGTTCAGGGACTAACTTG-GAA-AA--AA
1 CAAGTTCAGGCCCCAA-TTGAGAACAATTAT
* * *
77409345 AAAGTTCAAGCCTCAATGTGAGAACAATTAT
1 CAAGTTCAGGCCCCAAT-TGAGAACAATTAT
77409376 CAAGTTCAGG
1 CAAGTTCAGG
77409386 AACTAACTTG
Statistics
Matches: 49, Mismatches: 13, Indels: 12
0.66 0.18 0.16
Matches are distributed among these distances:
26 1 0.02
27 13 0.27
28 3 0.06
29 4 0.08
30 3 0.06
31 24 0.49
32 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (30 bp):
CAAGTTCAGGCCCCAATTGAGAACAATTAT
Found at i:77410677 original size:27 final size:27
Alignment explanation
Indices: 77410647--77410699 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
77410637 TCTAGTAATT
77410647 TATCTATATTGTAATAAAATACTAGTA
1 TATCTATATTGTAATAAAATACTAGTA
77410674 TATCTATATTGTAATAAAATACTAGT
1 TATCTATATTGTAATAAAATACTAGT
77410700 TTGATCAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (27 bp):
TATCTATATTGTAATAAAATACTAGTA
Found at i:77418328 original size:25 final size:26
Alignment explanation
Indices: 77418286--77418334 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
77418276 ACATATTTTC
77418286 TCAAAATTTTACTAGGAA-AAAATCA
1 TCAAAATTTTACTAGGAATAAAATCA
** *
77418311 TCAAAATTTTGTTGGGAATAAAAT
1 TCAAAATTTTACTAGGAATAAAAT
77418335 AGGGATGAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACTAGGAATAAAATCA
Found at i:77427998 original size:16 final size:16
Alignment explanation
Indices: 77427974--77428005 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77427964 AATAATCCTA
*
77427974 CTTTGAAAAATCTTTT
1 CTTTAAAAAATCTTTT
77427990 CTTTAAAAAATCTTTT
1 CTTTAAAAAATCTTTT
77428006 GGTATAAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.50
Consensus pattern (16 bp):
CTTTAAAAAATCTTTT
Found at i:77429961 original size:17 final size:17
Alignment explanation
Indices: 77429928--77429961 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77429918 AATGGATTTG
*
77429928 TAAATTTTGAGATATAA
1 TAAATTTTGAGAGATAA
*
77429945 TAAATTTTGTGAGATAA
1 TAAATTTTGAGAGATAA
77429962 GGTCAGAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (17 bp):
TAAATTTTGAGAGATAA
Found at i:77431770 original size:27 final size:23
Alignment explanation
Indices: 77431716--77431799 Score: 114
Period size: 23 Copynumber: 3.7 Consensus size: 23
77431706 ATACACAGAT
*
77431716 TCCAACCAAACACACTGAAATAA
1 TCCAACCAAACACACTAAAATAA
77431739 TCCAACCAAACACACTAAAATAA
1 TCCAACCAAACACACTAAAATAA
* * * *
77431762 TCCACCCAAACACACCAGAACAA
1 TCCAACCAAACACACTAAAATAA
*
77431785 TCCACCCAAACACAC
1 TCCAACCAAACACAC
77431800 CAGAATGGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.50, C:0.38, G:0.02, T:0.10
Consensus pattern (23 bp):
TCCAACCAAACACACTAAAATAA
Found at i:77432804 original size:16 final size:16
Alignment explanation
Indices: 77432785--77432817 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
77432775 GAATAGTCTC
*
77432785 TGTTTCTTTTCTTCTT
1 TGTTTCTTTTATTCTT
77432801 TGTTTCTTTTATTCTT
1 TGTTTCTTTTATTCTT
77432817 T
1 T
77432818 TACTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTTATTCTT
Found at i:77438072 original size:6 final size:6
Alignment explanation
Indices: 77438061--77438177 Score: 153
Period size: 6 Copynumber: 19.5 Consensus size: 6
77438051 GTTGTGGGTC
* * * * *
77438061 GAGCCT GAGCCT GAGCCT GAGCTT GAGCTT GAGCTT GAGCTT GAGCTT
1 GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT
* * *
77438109 GAGCCT GAGCTT GAGCTT GAGCCT GAGCTT GAGCCT GAGCCT GAGCCT
1 GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT
*
77438157 GAGCAT GAGCCT GAGCCT GAG
1 GAGCCT GAGCCT GAGCCT GAG
77438178 TCGAGCTTGC
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 103 1.00
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (6 bp):
GAGCCT
Found at i:77438087 original size:18 final size:18
Alignment explanation
Indices: 77438061--77438177 Score: 171
Period size: 18 Copynumber: 6.5 Consensus size: 18
77438051 GTTGTGGGTC
* *
77438061 GAGCCTGAGCCTGAGCCT
1 GAGCTTGAGCTTGAGCCT
*
77438079 GAGCTTGAGCTTGAGCTT
1 GAGCTTGAGCTTGAGCCT
77438097 GAGCTTGAGCTTGAGCCT
1 GAGCTTGAGCTTGAGCCT
77438115 GAGCTTGAGCTTGAGCCT
1 GAGCTTGAGCTTGAGCCT
*
77438133 GAGCTTGAGCCTGAGCCT
1 GAGCTTGAGCTTGAGCCT
* *
77438151 GAGCCTGAGCATGAGCCT
1 GAGCTTGAGCTTGAGCCT
*
77438169 GAGCCTGAG
1 GAGCTTGAG
77438178 TCGAGCTTGC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 92 1.00
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (18 bp):
GAGCTTGAGCTTGAGCCT
Found at i:77441253 original size:37 final size:37
Alignment explanation
Indices: 77441145--77441255 Score: 204
Period size: 37 Copynumber: 3.0 Consensus size: 37
77441135 ATGTAGTTAA
*
77441145 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCAGT
1 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
*
77441182 ATAATTTTGTATTTCGTCTTCTAGTTAAATAATCGGT
1 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
77441219 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
1 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
77441256 CCATGTAAAC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (37 bp):
ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
Found at i:77442725 original size:24 final size:24
Alignment explanation
Indices: 77442695--77442762 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 24
77442685 AAACAACTTA
77442695 ATATATATTTTAATATTTATAT-T
1 ATATATATTTTAATATTTATATAT
*
77442718 ATAGTATA-TTTAATTTTTCATATGAT
1 ATA-TATATTTTAATATTT-ATAT-AT
77442744 ATATATATTTATAA-ATTTA
1 ATATATATTT-TAATATTTA
77442763 AAAATAGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
23 12 0.32
24 8 0.22
25 5 0.14
26 9 0.24
27 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (24 bp):
ATATATATTTTAATATTTATATAT
Found at i:77448392 original size:36 final size:34
Alignment explanation
Indices: 77448350--77448423 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
77448340 AATGAAATTC
*
77448350 TAAATTATTAAATTAATAATTTATTTTAATTATACT
1 TAAATTATTAAATTAATAATTT-TTCTAATTA-ACT
* *
77448386 T-AA--ATTAAATTATTAATTTTTCTATTTAACT
1 TAAATTATTAAATTAATAATTTTTCTAATTAACT
77448417 TAAATTA
1 TAAATTA
77448424 AATAATAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
31 4 0.12
32 9 0.28
33 15 0.47
34 1 0.03
35 2 0.06
36 1 0.03
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (34 bp):
TAAATTATTAAATTAATAATTTTTCTAATTAACT
Found at i:77448421 original size:31 final size:33
Alignment explanation
Indices: 77448356--77448463 Score: 118
Period size: 31 Copynumber: 3.4 Consensus size: 33
77448346 ATTCTAAATT
*
77448356 ATTAAATTAATAATTTATTTTAATTATACTTAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
* *
77448389 ATTAAATTATTAATTT-TTCTATTTA-ACTTAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
** *
77448420 ATTAAA-TAATAATAAATTCTAAATATAC-TAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
77448451 ATATAAA-TAATAA
1 AT-TAAATTAATAA
77448464 CTAAATAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
30 6 0.09
31 24 0.38
32 19 0.30
33 15 0.23
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (33 bp):
ATTAAATTAATAATTTATTCTAATTATACTTAA
Found at i:77448437 original size:15 final size:14
Alignment explanation
Indices: 77448417--77448557 Score: 83
Period size: 15 Copynumber: 9.5 Consensus size: 14
77448407 CTATTTAACT
77448417 TAAATTAAATAATAA
1 TAAA-TAAATAATAA
*
77448432 TAAATTCTAAAT-ATAC
1 TAAA---TAAATAATAA
*
77448448 TAAATATA-AATAA
1 TAAATAAATAATAA
*
77448461 TAACTAAATAATAA
1 TAAATAAATAATAA
77448475 CTAAATAGAAATAATAA
1 -TAAAT--AAATAATAA
* *
77448492 TATATATAATACTAA
1 TAAATA-AATAATAA
*
77448507 TATATAAA-AATAA
1 TAAATAAATAATAA
*
77448520 TATATAAATAGATAA
1 TAAATAAATA-ATAA
77448535 TATAAT-AATAGATAA
1 TA-AATAAATA-ATAA
77448550 TATAATAA
1 TA-AATAA
77448558 TAGATAGAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 23
0.75 0.08 0.17
Matches are distributed among these distances:
13 24 0.23
14 9 0.09
15 42 0.41
16 14 0.14
17 14 0.14
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (14 bp):
TAAATAAATAATAA
Found at i:77448470 original size:11 final size:11
Alignment explanation
Indices: 77448454--77448481 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
77448444 ATACTAAATA
77448454 TAAATAATAAC
1 TAAATAATAAC
77448465 TAAATAATAAC
1 TAAATAATAAC
77448476 TAAATA
1 TAAATA
77448482 GAAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAATAATAAC
Done.