Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 23 of 311
Found at i:6428004 original size:194 final size:190
Alignment explanation
Indices: 6427612--6428249 Score: 1073
Period size: 194 Copynumber: 3.3 Consensus size: 190
6427602 TACATGATAG
*
6427612 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
6427677 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
6427742 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGTTATGAATGTGAAAGTGTA
129 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG--ATGAATGTGAAAGTGTA
6427806 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
6427871 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
6427936 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TA
* *
6428000 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
6428065 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
6428130 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * *
6428190 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
6428250 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 18, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 59 0.14
192 75 0.18
194 277 0.66
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (190 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:6430319 original size:44 final size:44
Alignment explanation
Indices: 6430014--6430296 Score: 440
Period size: 44 Copynumber: 6.4 Consensus size: 44
6430004 GGCGAATCCT
6430014 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
6430058 GCAGATTTTGCATCTCTGTATTGGCAGAGGGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* ** *
6430102 GCAAATTTGGTGTCTCTGTATTGGCGAAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
*
6430146 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGGTCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
6430190 GCAGATTTGGAATCTCTGTATTGGCGGAGAGCAGATTGAAGATT
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
6430234 CCAGATTTGGCGTCTCTGTATTGGCGAAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
6430278 GCAGATTTGGCATCTCTGT
1 GCAGATTTGGCATCTCTGT
6430297 GTTGACAAAG
Statistics
Matches: 212, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 212 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
Found at i:6434213 original size:23 final size:25
Alignment explanation
Indices: 6434169--6434215 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
6434159 TATATTATTA
*
6434169 GGGGGTTATATATAATATATATAAG
1 GGGGGTTATATATAATACATATAAG
*
6434194 GGGGGTTGTA-AT-ATACATATAA
1 GGGGGTTATATATAATACATATAA
6434216 ATGTGTTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 2 0.10
25 9 0.45
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (25 bp):
GGGGGTTATATATAATACATATAAG
Found at i:6435396 original size:23 final size:23
Alignment explanation
Indices: 6435353--6435397 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6435343 CACAGGCTAG
* *
6435353 CACATGGGCGTGTGGCTAGCCCT
1 CACACGGGCGTCTGGCTAGCCCT
6435376 CACACGGGCGTCT-GCTCAGCCC
1 CACACGGGCGTCTGGCT-AGCCC
6435398 GTGGGAATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.13, C:0.38, G:0.31, T:0.18
Consensus pattern (23 bp):
CACACGGGCGTCTGGCTAGCCCT
Found at i:6437235 original size:18 final size:19
Alignment explanation
Indices: 6437212--6437257 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
6437202 GTCTAGGAAA
6437212 AAAAATAAACAG-AAAAAT
1 AAAAATAAACAGTAAAAAT
**
6437230 AAAAATAATTAGTAAAAAT
1 AAAAATAAACAGTAAAAAT
6437249 AAAAATAAA
1 AAAAATAAA
6437258 AATAAATGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.17
Consensus pattern (19 bp):
AAAAATAAACAGTAAAAAT
Found at i:6437252 original size:5 final size:6
Alignment explanation
Indices: 6437212--6437263 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
6437202 GTCTAGGAAA
* * * *
6437212 AAAAAT AAACAG AAAAAT AAAAAT AATTAGT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT AAAAAT AAAAAT AAAAAT
6437261 AAA
1 AAA
6437264 TGGACTCAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
6 33 0.89
7 4 0.11
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:6439830 original size:30 final size:30
Alignment explanation
Indices: 6439794--6439854 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
6439784 AAAGGGCTAG
* *
6439794 CACATGGGCGTGTGGCCTGCCCATGTGGAT
1 CACATGGGCGTGTGCCCAGCCCATGTGGAT
*
6439824 CACATGGGCGTGTGCCCAGGCCATGTGGAT
1 CACATGGGCGTGTGCCCAGCCCATGTGGAT
6439854 C
1 C
6439855 CTAAAAAGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (30 bp):
CACATGGGCGTGTGCCCAGCCCATGTGGAT
Found at i:6441868 original size:3 final size:3
Alignment explanation
Indices: 6441860--6442016 Score: 70
Period size: 3 Copynumber: 53.3 Consensus size: 3
6441850 AAAATTATAC
6441860 ATA ATA ATAA ATA ATA ATA AT- ATA AT- ATA AT- ATA AT- ATA AT-
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
6441901 ATA AAA ATA AT- ATA ATGA ATA AT- ATA TTTA GTA A-A ATG AT- ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* *
6441944 AT- ATA ATA A-A ATA TATA ATGA ATTA ATA ATA AT- ATG ATAA ATA ATGC
1 ATA ATA ATA ATA ATA -ATA AT-A A-TA ATA ATA ATA ATA AT-A ATA AT-A
*
6441991 ATA AGTA AAA ATA AT- ATA TATA ATA A
1 ATA A-TA ATA ATA ATA ATA -ATA ATA A
6442017 ATTATTTATA
Statistics
Matches: 120, Mismatches: 11, Indels: 46
0.68 0.06 0.26
Matches are distributed among these distances:
2 26 0.22
3 68 0.57
4 25 0.21
5 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6441886 original size:5 final size:5
Alignment explanation
Indices: 6441860--6441958 Score: 83
Period size: 5 Copynumber: 18.6 Consensus size: 5
6441850 AAAATTATAC
*
6441860 ATAAT AATAA- ATAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATAAAA
1 ATAAT -ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT
* * * *
6441907 ATAAT ATAAT GAATAAT ATATTT AGTAAA ATGAT ATAAT ATAAT AAAAT
1 ATAAT ATAAT --ATAAT ATA-AT A-TAAT ATAAT ATAAT ATAAT ATAAT
6441956 ATA
1 ATA
6441959 TAATGAATTA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
4 4 0.05
5 49 0.64
6 16 0.21
7 7 0.09
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:6442002 original size:65 final size:65
Alignment explanation
Indices: 6441851--6442017 Score: 173
Period size: 65 Copynumber: 2.6 Consensus size: 65
6441841 CAAATTTTTA
* *
6441851 AAATTATACATAA-TAATAAATAATAATAATATAATATAATATAATATAATATAAAAATAATATA
1 AAATAATACATAAGTAA-AAATAAT-ATAATATAATAAAATATAATATAATATAAAAATAATATA
6441915 AT
64 AT
* * * * *
6441917 GAATAATATATTTAGT-AAAATGATATAATATAATAAAATAT-ATAATGAAT-TAATAATAATAT
1 AAATAATACA-TAAGTAAAAATAATATAATATAATAAAATATAAT-AT-AATATAAAAATAATAT
*
6441979 GAT
63 AAT
*
6441982 AAATAATGCATAAGTAAAAATAATAT-ATATAATAAA
1 AAATAATACATAAGTAAAAATAATATAATATAATAAA
6442018 TTATTTATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
64 16 0.19
65 47 0.57
66 16 0.19
67 3 0.04
68 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (65 bp):
AAATAATACATAAGTAAAAATAATATAATATAATAAAATATAATATAATATAAAAATAATATAAT
Found at i:6442013 original size:26 final size:26
Alignment explanation
Indices: 6441948--6442020 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
6441938 GATATAATAT
* *
6441948 AATAAAATATATAATGAATTAATAAT
1 AATAATATATATAATGAATTAATAAA
* *
6441974 AAT-ATGATAAATAATGCA-TAAGTAAA
1 AATAAT-ATATATAATGAATTAA-TAAA
*
6442000 AATAATATATATAATAAATTA
1 AATAATATATATAATGAATTA
6442021 TTTATATGTA
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
25 4 0.11
26 28 0.78
27 4 0.11
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.33
Consensus pattern (26 bp):
AATAATATATATAATGAATTAATAAA
Found at i:6443611 original size:45 final size:45
Alignment explanation
Indices: 6443485--6444101 Score: 229
Period size: 45 Copynumber: 14.0 Consensus size: 45
6443475 TAATAACCTT
* * *
6443485 GATCTGCTCCCCGTCAAATACAGAGACGCCAAATCTGCTATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
* * * * * * *
6443530 GATTTACTT--TGATGTAA-ACATACGAATGTCAGATCTGCTATCTTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * *
6443575 GATCTACTTCCCGTCTAATACAGAGACGCCAAATCTG-TCATTTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * * * *
6443620 AATCTACTT--TG-AT-GT-CA-ACA---CAGATCTGCTATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
* *
6443656 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-ATCATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * *
6443701 GATCTGCTT--CGATGTAGACACACGA-ATGTCAGATCTGCTATATTC
1 GATCTGCTTCCCG-TCTA-ATACA-GAGATGCCAAATCTGCTATCTTC
* * *
6443746 GATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTG-TCATCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * * *
6443791 AATCTGCTT--CGATGTAA-ACACACGAATGTCAGATCTACTATCTTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
** *
6443836 GATCTGC-TCACCGTCTAATATGGAGACGCCAAATCTG-TCATCTTC
1 GATCTGCTTC-CCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * * * *
6443881 GATCTGCTT--CGATGTAA-ACACACGAATGTCAGATCTACTATCTTT
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * ** * *
6443926 GATCTGCTCCCCATCTAATATGGAGACGCCAAATCTG-TCATATTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCT-ATCTTC
* * * ** * *
6443971 GATCTGATT--CGATGTAA-ACACATGAATATCAGATCTTCTATCTTC
1 GATCTGCTTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTATCTTC
* * * *
6444016 GATCTACTCCCCGCCTAATACAGAGATGCCAAATCTACT-TCTTC
1 GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
* *
6444060 GATTTG-TTCCCTGTC-AATATAGAGATGCCAAATCTGCTATCT
1 GATCTGCTTCCC-GTCTAATACAGAGATGCCAAATCTGCTATCT
6444102 ACATTGTCCC
Statistics
Matches: 402, Mismatches: 117, Indels: 107
0.64 0.19 0.17
Matches are distributed among these distances:
36 18 0.04
37 1 0.00
38 1 0.00
39 3 0.01
40 3 0.01
41 3 0.01
42 3 0.01
43 45 0.11
44 44 0.11
45 232 0.58
46 29 0.07
47 20 0.05
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (45 bp):
GATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGCTATCTTC
Found at i:6443749 original size:90 final size:90
Alignment explanation
Indices: 6443640--6444051 Score: 626
Period size: 90 Copynumber: 4.6 Consensus size: 90
6443630 GATGTCAACA
* * * *
6443640 CAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATC
1 CAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCGATC
*
6443705 TGCTTCGATGTAGACACACGAATGT
66 TGCTTCGATGTAAACACACGAATGT
* * *
6443730 CAGATCTGCTATATTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCAATC
1 CAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCGATC
6443795 TGCTTCGATGTAAACACACGAATGT
66 TGCTTCGATGTAAACACACGAATGT
* *
6443820 CAGATCTACTATCTTCGATCTGCTCACCGTCTAATATGGAGACGCCAAATCTGTCATCTTCGATC
1 CAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCGATC
6443885 TGCTTCGATGTAAACACACGAATGT
66 TGCTTCGATGTAAACACACGAATGT
* * * *
6443910 CAGATCTACTATCTTTGATCTGCTCCCCATCTAATATGGAGACGCCAAATCTGTCATATTCGATC
1 CAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCGATC
* * *
6443975 TGATTCGATGTAAACACATGAATAT
66 TGCTTCGATGTAAACACACGAATGT
* * * * *
6444000 CAGATCTTCTATCTTCGATCTACTCCCCGCCTAATACAGAGATGCCAAATCT
1 CAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCT
6444052 ACTTCTTCGA
Statistics
Matches: 296, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 296 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (90 bp):
CAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCGATC
TGCTTCGATGTAAACACACGAATGT
Found at i:6443896 original size:180 final size:179
Alignment explanation
Indices: 6443485--6444051 Score: 765
Period size: 180 Copynumber: 3.2 Consensus size: 179
6443475 TAATAACCTT
* * * *
6443485 GATCTGCTCCCCGTCAAATACAGAGACGCCAAATCTG-CTATCTTCGATTTACTTTGATGTAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAAC
* * * *
6443549 ATACGAATGTCAGATCTGCTATCTTCGATCTACTTCCCGTCTAATACAGAGACGCCAAATCTGTC
65 ACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTC
* * * *
6443614 ATTTTCAATCTACTTTGATGT---CA-AC--A--CAGATCTGCTATCTTC
130 ATATTCAATCTGCTTCGATGTAAACACACGAATTCAGATCTACTATCTTC
* * *
6443656 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTTCGATGTAGACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
6443721 CACGAATGTCAGATCTGCTATATTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCA
66 CACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCA
*
6443786 TCTTCAATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTC
131 TATTCAATCTGCTTCGATGTAAACACACGAAT-TCAGATCTACTATCTTC
* **
6443836 GATCTGCTCACCGTCTAATATGGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* * * *
6443901 CACGAATGTCAGATCTACTATCTTTGATCTGCTCCCCATCTAATATGGAGACGCCAAATCTGTCA
66 CACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCA
* * * *
6443966 TATTCGATCTGATTCGATGTAAACACATGAATATCAGATCTTCTATCTTC
131 TATTCAATCTGCTTCGATGTAAACACACGAAT-TCAGATCTACTATCTTC
* * *
6444016 GATCTACTCCCCGCCTAATACAGAGATGCCAAATCT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
6444052 ACTTCTTCGA
Statistics
Matches: 347, Mismatches: 39, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
171 133 0.38
172 1 0.00
174 2 0.01
175 2 0.01
177 1 0.00
180 208 0.60
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (179 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
CACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCA
TATTCAATCTGCTTCGATGTAAACACACGAATTCAGATCTACTATCTTC
Found at i:6456090 original size:22 final size:22
Alignment explanation
Indices: 6456064--6456106 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6456054 ATTTTACATA
6456064 ATATACTA-AATATTTAATAATG
1 ATATA-TATAATATTTAATAATG
*
6456086 ATATATATATTATTTAATAAT
1 ATATATATAATATTTAATAAT
6456107 AGTTTACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATATAATATTTAATAATG
Found at i:6456148 original size:5 final size:5
Alignment explanation
Indices: 6456132--6456230 Score: 99
Period size: 5 Copynumber: 18.6 Consensus size: 5
6456122 AAAATTATAC
* *
6456132 ATAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAAA ATAAC
1 ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT
* * *
6456184 ATAAT GAATAAT ATATAT AGTAAA ATGAT ATAAT ATAAT AAAAT ATA
1 ATAAT --ATAAT ATA-AT A-TAAT ATAAT ATAAT ATAAT ATAAT ATA
6456231 TAATGAATTA
Statistics
Matches: 79, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
5 58 0.73
6 14 0.18
7 7 0.09
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:6458653 original size:3 final size:3
Alignment explanation
Indices: 6458645--6458674 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
6458635 AAAAAGAAAG
6458645 ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6458675 AAAACTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:6458669 original size:11 final size:11
Alignment explanation
Indices: 6458645--6458676 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
6458635 AAAAAGAAAG
6458645 ATAATAATAATA
1 ATAATAA-AATA
6458657 ATAATAAAATA
1 ATAATAAAATA
6458668 ATAATAAAA
1 ATAATAAAA
6458677 AACTCAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:6458669 original size:14 final size:14
Alignment explanation
Indices: 6458645--6458678 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
6458635 AAAAAGAAAG
6458645 ATAATAATAATAATA
1 ATAA-AATAATAATA
6458660 ATAAAATAATAATA
1 ATAAAATAATAATA
6458674 A-AAAA
1 ATAAAA
6458679 CTCAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 11 0.58
15 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAAATAATAATA
Found at i:6458803 original size:24 final size:24
Alignment explanation
Indices: 6458769--6458814 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
6458759 ATAAAATTAG
* *
6458769 AAATAATAAAAAATATGTATAAAA
1 AAATAAAAAAAAATAAGTATAAAA
*
6458793 AAATAAAAAAATATAAGTATAA
1 AAATAAAAAAAAATAAGTATAA
6458815 GAATAATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (24 bp):
AAATAAAAAAAAATAAGTATAAAA
Found at i:6458827 original size:4 final size:4
Alignment explanation
Indices: 6458818--6458847 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
6458808 AGTATAAGAA
6458818 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TA
6458848 GTAAAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:6458879 original size:22 final size:20
Alignment explanation
Indices: 6458849--6458900 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
6458839 AATTAATTAG
*
6458849 TAAAATAAAAATAAATAATA
1 TAAAATAAAAATAAATAAAA
6458869 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAAAA
6458891 TAAAATAAAA
1 TAAAATAAAA
6458901 TTGGGGTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.28
21 4 0.14
22 17 0.59
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAAAA
Found at i:6458984 original size:30 final size:30
Alignment explanation
Indices: 6458950--6459051 Score: 186
Period size: 30 Copynumber: 3.4 Consensus size: 30
6458940 GCTCGTGTGT
6458950 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
1 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
*
6458980 CCAGGCCGTGTGGGTTACAAGGCCATGTCG
1 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
*
6459010 CCAGGCCGTGTGGGTCACAAGGCAATGTCG
1 CCAGGCCGTGTGGGTCACAAGGCCATGTCG
6459040 CCAGGCCGTGTG
1 CCAGGCCGTGTG
6459052 TGTTTTCTTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.17, C:0.28, G:0.37, T:0.18
Consensus pattern (30 bp):
CCAGGCCGTGTGGGTCACAAGGCCATGTCG
Found at i:6463714 original size:45 final size:45
Alignment explanation
Indices: 6463650--6463871 Score: 213
Period size: 45 Copynumber: 5.0 Consensus size: 45
6463640 AGGACTATGC
6463650 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
* * * * *
6463695 TATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCAATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
* ** *
6463740 TATGTGTTTTCGTGTAAGACCACGTCTG-GTATGTTAGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAG-ACATTGGCATCGATA
* * * * *
6463785 TATATGGTTACGAGTAAGACCATGTCT-AGGACATCGGCATCG-TA
1 TATGTGTTTTCGTGTAAGACCATGTCTGA-GACATTGGCATCGATA
* * * * *
6463829 T-T-TG-ATTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
6463871 T
1 T
6463872 GAGATAGCAT
Statistics
Matches: 146, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
41 26 0.18
42 5 0.03
43 1 0.01
44 4 0.03
45 109 0.75
46 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCATCGATA
Found at i:6475199 original size:26 final size:26
Alignment explanation
Indices: 6475163--6475246 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
6475153 TGATACAAAT
6475163 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6475189 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6475215 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6475241 TGATAA
1 TGATAA
6475247 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:6476909 original size:27 final size:27
Alignment explanation
Indices: 6476866--6477007 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
6476856 TGGAGGAAGC
*
6476866 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
6476893 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
6476920 GTTCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
6476947 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
6476974 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
6477001 GTTCTGG
1 GTTCTGG
6477008 CAGCCATGCT
Statistics
Matches: 105, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
26 5 0.05
27 85 0.81
28 15 0.14
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:6476953 original size:54 final size:54
Alignment explanation
Indices: 6476866--6477007 Score: 207
Period size: 54 Copynumber: 2.6 Consensus size: 54
6476856 TGGAGGAAGC
* * *
6476866 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCT
1 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCT
6476920 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
* *
6476974 GTATCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 GT-TCTGGTGGCTCTGCCACATATATCTGTTCTGG
6477008 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
54 62 0.77
55 19 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
Found at i:6486112 original size:13 final size:13
Alignment explanation
Indices: 6486094--6486118 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6486084 GCTTCTCGCC
6486094 TTGTTCTCTGTTT
1 TTGTTCTCTGTTT
6486107 TTGTTCTCTGTT
1 TTGTTCTCTGTT
6486119 CTTGGCTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.16, T:0.68
Consensus pattern (13 bp):
TTGTTCTCTGTTT
Found at i:6493433 original size:17 final size:17
Alignment explanation
Indices: 6493413--6493446 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6493403 AAATAAATTT
6493413 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
6493430 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
6493447 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:6495006 original size:120 final size:120
Alignment explanation
Indices: 6494791--6495031 Score: 385
Period size: 120 Copynumber: 2.0 Consensus size: 120
6494781 CACATTAAAA
* * * *
6494791 ATCATTGTCGGAAGAGATTAAATCAAGATGATGAAGAATTTCAAGTAACACAATGAACATGTAAT
1 ATCATTGTCGGAAGACATTAAATCAAAACGATGAAGAATTTCAAGTAACACAATGAACACGTAAT
* *
6494856 AAGGACATCTTAATAATATAATGAGCCATCTTATTTGAATCATGAAACGACCAAT
66 AAGGACATCTTAATAAGATAATGAGCCATCTTATTTGAATCACGAAACGACCAAT
*
6494911 ATCATTGTTGGAAGACATTAAATCAAAACGATGAAGAATTTCAAGTAACACAAT-AAGCACGTAA
1 ATCATTGTCGGAAGACATTAAATCAAAACGATGAAGAATTTCAAGTAACACAATGAA-CACGTAA
* *
6494975 TAAGGACATCTTAATAAGATAATGAGTCATCTTATTTGAATCACGAAACGATCAAT
65 TAAGGACATCTTAATAAGATAATGAGCCATCTTATTTGAATCACGAAACGACCAAT
6495031 A
1 A
6495032 AAATGATAAG
Statistics
Matches: 111, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
119 2 0.02
120 109 0.98
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (120 bp):
ATCATTGTCGGAAGACATTAAATCAAAACGATGAAGAATTTCAAGTAACACAATGAACACGTAAT
AAGGACATCTTAATAAGATAATGAGCCATCTTATTTGAATCACGAAACGACCAAT
Found at i:6496878 original size:20 final size:20
Alignment explanation
Indices: 6496850--6496895 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
6496840 GCTGACAAAA
6496850 CAGTCATCTGGGTTTCATTT
1 CAGTCATCTGGGTTTCATTT
*
6496870 CAGTTATCTGGGTTTCATTT
1 CAGTCATCTGGGTTTCATTT
6496890 CAGTCA
1 CAGTCA
6496896 CCCAACTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (20 bp):
CAGTCATCTGGGTTTCATTT
Found at i:6499112 original size:20 final size:20
Alignment explanation
Indices: 6499087--6499130 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
6499077 TCAAAGTTGA
*
6499087 GTGACTGAAATAAAACCCAG
1 GTGACTGAAATAAAACACAG
*
6499107 GTGACTGAAATGAAACACAG
1 GTGACTGAAATAAAACACAG
6499127 GTGA
1 GTGA
6499131 TTGTTTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (20 bp):
GTGACTGAAATAAAACACAG
Found at i:6508473 original size:22 final size:22
Alignment explanation
Indices: 6508430--6508473 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
6508420 TCTCAACCAG
*
6508430 TCATACAATTCAAATACAATTC
1 TCATACAATTCAAAAACAATTC
*
6508452 TCATACCAATT-AAAAACCATTC
1 TCATA-CAATTCAAAAACAATTC
6508474 AAATACATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (22 bp):
TCATACAATTCAAAAACAATTC
Found at i:6515460 original size:26 final size:26
Alignment explanation
Indices: 6515424--6515476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6515414 CAAGATATGA
*
6515424 TTGTACAAATGTTCATGGTGTAGCCT
1 TTGTACAAATGTTCATAGTGTAGCCT
*
6515450 TTGTACGAATGTTCATAGTGTAGCCT
1 TTGTACAAATGTTCATAGTGTAGCCT
6515476 T
1 T
6515477 CGATAATGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (26 bp):
TTGTACAAATGTTCATAGTGTAGCCT
Found at i:6517235 original size:24 final size:24
Alignment explanation
Indices: 6517203--6517251 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
6517193 CTCGAAAGAA
6517203 GAAAAAACTATCATCAACAAAAAT
1 GAAAAAACTATCATCAACAAAAAT
6517227 GAAAAAACTATCATCAACAAAAAT
1 GAAAAAACTATCATCAACAAAAAT
6517251 G
1 G
6517252 TGGGAAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.61, C:0.16, G:0.06, T:0.16
Consensus pattern (24 bp):
GAAAAAACTATCATCAACAAAAAT
Found at i:6518481 original size:23 final size:23
Alignment explanation
Indices: 6518454--6518504 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
6518444 TTTAAATTTT
*
6518454 GAGTTAA-TCAAATTAAGTTATTC
1 GAGTTAACTCAAA-TAAGTAATTC
*
6518477 GAGTTAACTCAAATAAGTAATTT
1 GAGTTAACTCAAATAAGTAATTC
6518500 GAGTT
1 GAGTT
6518505 CTTTAGTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (23 bp):
GAGTTAACTCAAATAAGTAATTC
Found at i:6518683 original size:18 final size:19
Alignment explanation
Indices: 6518635--6518687 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
6518625 AAAAATTACA
6518635 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
6518654 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
6518673 AAAAATT-AAAA-AATT
1 AAAAATTCAAAATAATT
6518688 ATATCTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:6524255 original size:15 final size:15
Alignment explanation
Indices: 6524235--6524342 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
6524225 ATCCAGGAAA
6524235 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
6524250 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
6524264 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* ***
6524280 ATCAAATAT-TGAAA
1 ATCAAAGATATGGGT
6524294 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
6524310 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
6524324 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
6524340 ATC
1 ATC
6524343 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:6524264 original size:30 final size:30
Alignment explanation
Indices: 6524230--6524342 Score: 174
Period size: 30 Copynumber: 3.8 Consensus size: 30
6524220 GAATTATCCA
6524230 GGAAAATCAAAGATATGGGTATCAAATAAT
1 GGAAAATCAAAGATATGGGTATCAAATAAT
*
6524260 GGAAAGTCAAAGATATGGGTATCAAAT-AT
1 GGAAAATCAAAGATATGGGTATCAAATAAT
* *
6524289 TGAAAAGTCAAAGATATGGGTATCAAATATT
1 GGAAAA-TCAAAGATATGGGTATCAAATAAT
*
6524320 GGAAAGTCAAAGATATGGGTATC
1 GGAAAATCAAAGATATGGGTATC
6524343 GAGATATTGG
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
29 6 0.08
30 64 0.85
31 5 0.07
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
GGAAAATCAAAGATATGGGTATCAAATAAT
Found at i:6524329 original size:60 final size:60
Alignment explanation
Indices: 6524231--6524351 Score: 208
Period size: 60 Copynumber: 2.0 Consensus size: 60
6524221 AATTATCCAG
6524231 GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATC-AAATATT
1 GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
* *
6524290 GAAAAGTCAAAGATATGGGTATCAAATATTGGAAAGTCAAAGATATGGGTATCGAGATATT
1 GAAAA-TCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
6524351 G
1 G
6524352 GCATAATAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
59 5 0.09
60 46 0.79
61 7 0.12
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.26
Consensus pattern (60 bp):
GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
Found at i:6528945 original size:15 final size:15
Alignment explanation
Indices: 6528925--6529039 Score: 94
Period size: 15 Copynumber: 7.7 Consensus size: 15
6528915 TTTATGGAAA
6528925 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
6528940 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
6528954 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
6528970 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
6528984 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
6529000 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
6529014 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
6529030 ATC-AAGATAT
1 ATCAAAGATAT
6529040 TGGCATAATA
Statistics
Matches: 76, Mismatches: 18, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
14 20 0.26
15 43 0.57
16 13 0.17
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:6528954 original size:30 final size:30
Alignment explanation
Indices: 6528918--6529034 Score: 207
Period size: 30 Copynumber: 3.9 Consensus size: 30
6528908 ATCCATATTT
*
6528918 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
6528948 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
6528978 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
6529008 TTGGAAAGTCAAAGATATGGGTATCAA
1 ATGGAAAGTCAAAGATATGGGTATCAA
6529035 GATATTGGCA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:6535055 original size:24 final size:23
Alignment explanation
Indices: 6535028--6535087 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
6535018 GTATTAGAAA
6535028 GCTCAAGAGAGCTTATATCGGGAT
1 GCTCAAGAGAGC-TATATCGGGAT
* *
6535052 GCTC-AGCGATCTATATCGGGAT
1 GCTCAAGAGAGCTATATCGGGAT
* *
6535074 GCTCATGCGAGCTA
1 GCTCAAGAGAGCTA
6535088 CGGTGTGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 15 0.48
23 12 0.39
24 4 0.13
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (23 bp):
GCTCAAGAGAGCTATATCGGGAT
Found at i:6535067 original size:22 final size:23
Alignment explanation
Indices: 6535041--6535083 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
6535031 CAAGAGAGCT
6535041 TATATCGGGATGCTCA-GCGATC
1 TATATCGGGATGCTCATGCGATC
6535063 TATATCGGGATGCTCATGCGA
1 TATATCGGGATGCTCATGCGA
6535084 GCTACGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (23 bp):
TATATCGGGATGCTCATGCGATC
Found at i:6535977 original size:20 final size:21
Alignment explanation
Indices: 6535938--6535977 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6535928 GATGATATTT
*
6535938 TCTTTATTTTATTATTTTTCA
1 TCTTTATTTTATTATCTTTCA
6535959 TCTTTATTTT-TTATCTTTC
1 TCTTTATTTTATTATCTTTC
6535978 CAATTTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.72
Consensus pattern (21 bp):
TCTTTATTTTATTATCTTTCA
Found at i:6536606 original size:29 final size:28
Alignment explanation
Indices: 6536553--6536611 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
6536543 CCTTCATAAA
* *
6536553 AATAAATAAATAAATCAATTAAGCTTCT
1 AATAAATAAATAAATCAACTAAGCTACT
*
6536581 AATAAA-AAATCACAATCAACTGAGCTACT
1 AATAAATAAAT-A-AATCAACTAAGCTACT
6536610 AA
1 AA
6536612 AATGTAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
28 7 0.27
29 15 0.58
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.25
Consensus pattern (28 bp):
AATAAATAAATAAATCAACTAAGCTACT
Found at i:6537462 original size:153 final size:150
Alignment explanation
Indices: 6537238--6537671 Score: 552
Period size: 153 Copynumber: 2.9 Consensus size: 150
6537228 TTTTTAAAAA
* * *
6537238 AAAAGAGAAAGTTTAGATTTTAAAAATTAAAAAT-TTGT-TTTTTTTTAGTTATTTTAAAGGAAA
1 AAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATTTTGTTTTTTTTAGTCATTTTAAAGGAAA
*
6537301 GTTTAAATTTTTAAAAAAAAGTTTTGATTTTTTTCAACTATTTTAAAATAAAAGCTTTGATCTTT
66 GTTTAAATTTTTAAAAAAAAATTTTGATTTTTTTCAACTATTTTAAAATAAAAG-TTTGATCTTT
6537366 AAGAAAAATAGTGTTTTTTTTT
130 AAGAAAAATAGTG-TTTTTTTT
* *
6537388 AAATGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTGTTTTTTTTAGTCATTTTTAAGGAA
1 AAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATAT-TTTGTTTTTTTTAGTCATTTTAAAGGAA
*
6537453 AGTTTAAATTTTTAAAAAAAAATTAATT--TTTTTTTCAACTATTTCAAAATAAAAGTTTTGATC
65 AGTTTAAATTTTTAAAAAAAAATT--TTGATTTTTTTCAACTATTTTAAAATAAAAG-TTTGATC
6537516 TTTAAGAAAAATAGTGTTTTTTTT
127 TTTAAGAAAAATAGTGTTTTTTTT
* *
6537540 AAAAGAGAAAGTTTAGATTTT-TAAAAT-AAAA-A-TTTG--CTTTTTAGTCATTTTAAAGGAAA
1 AAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATTTTGTTTTTTTTAGTCATTTTAAAGG-AA
* * * * * *
6537599 ATTTTGAATTTTTTTAAAACAAATTTTTGATCTTTTTCAACTATTTCT-AAATAAAA-TTTGATT
65 AGTTT-AA-ATTTTTAAAAAAAAATTTTGATTTTTTTCAACTATTT-TAAAATAAAAGTTTGATC
6537662 TTTAA-AAAAA
127 TTTAAGAAAAA
6537672 GGTAATAATT
Statistics
Matches: 254, Mismatches: 19, Indels: 27
0.85 0.06 0.09
Matches are distributed among these distances:
145 23 0.09
146 19 0.07
147 6 0.02
148 37 0.15
149 1 0.00
150 36 0.14
151 6 0.02
152 30 0.12
153 94 0.37
155 2 0.01
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.46
Consensus pattern (150 bp):
AAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATTTTGTTTTTTTTAGTCATTTTAAAGGAAA
GTTTAAATTTTTAAAAAAAAATTTTGATTTTTTTCAACTATTTTAAAATAAAAGTTTGATCTTTA
AGAAAAATAGTGTTTTTTTT
Found at i:6538257 original size:10 final size:11
Alignment explanation
Indices: 6538241--6538271 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
6538231 TTGTATAATT
6538241 TTTATTTATTC
1 TTTATTTATTC
6538252 -TTATTTATTC
1 TTTATTTATTC
6538262 TTTATTTATT
1 TTTATTTATT
6538272 TTCATGTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTTATTC
Found at i:6539661 original size:20 final size:20
Alignment explanation
Indices: 6539638--6539684 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
6539628 TATTTAATTC
6539638 TAAAAATTATTA-AAAT-TGTA
1 TAAAAATT-TTAGAAATAT-TA
*
6539658 TAAAAAATTTAGAAATATTA
1 TAAAAATTTTAGAAATATTA
6539678 TAAAAAT
1 TAAAAAT
6539685 AATATAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 19 0.83
21 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAAAAATTTTAGAAATATTA
Found at i:6539701 original size:11 final size:11
Alignment explanation
Indices: 6539639--6539701 Score: 53
Period size: 11 Copynumber: 6.0 Consensus size: 11
6539629 ATTTAATTCT
*
6539639 AAAA-ATTATT
1 AAAATATTATA
6539649 AAAAT-TGTATA
1 AAAATAT-TATA
6539660 AAAA-ATT-TA
1 AAAATATTATA
*
6539669 GAAATATTATA
1 AAAATATTATA
*
6539680 AAAATAATATA
1 AAAATATTATA
*
6539691 AATATATTATA
1 AAAATATTATA
6539702 TATTATAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
9 5 0.12
10 9 0.21
11 28 0.67
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAATATTATA
Found at i:6540919 original size:38 final size:38
Alignment explanation
Indices: 6540863--6540939 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
6540853 GGAATCTTAG
*
6540863 AGCTTCTGAAGTATCATGCCCGTGTATTATATATTGAT
1 AGCTTCTGAAGTACCATGCCCGTGTATTATATATTGAT
*
6540901 AGCTTCTGAAGTACCATGCCCGTGTATTATGTATTGAT
1 AGCTTCTGAAGTACCATGCCCGTGTATTATATATTGAT
6540939 A
1 A
6540940 TAGATGTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (38 bp):
AGCTTCTGAAGTACCATGCCCGTGTATTATATATTGAT
Found at i:6540962 original size:36 final size:38
Alignment explanation
Indices: 6540875--6540964 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 38
6540865 CTTCTGAAGT
*
6540875 ATCATGCCCGTGTATTATATATTGATAGCTTCTGAAGTAC
1 ATCATGCCCGTGTATTATATATTGATA-C-TCAGAAGTAC
* *
6540915 --CATGCCCGTGTATTATGTATTGATA-T-AGATGTAC
1 ATCATGCCCGTGTATTATATATTGATACTCAGAAGTAC
6540949 ATCATGCCCGTGTATT
1 ATCATGCCCGTGTATT
6540965 CTAGTTATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
34 6 0.13
35 1 0.02
36 14 0.31
38 24 0.53
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (38 bp):
ATCATGCCCGTGTATTATATATTGATACTCAGAAGTAC
Found at i:6544320 original size:20 final size:20
Alignment explanation
Indices: 6544272--6544320 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
6544262 TAATTTTTTA
*
6544272 AAAAAATTAAAATTTATTAT
1 AAAAAATTAAAATTTAGTAT
**
6544292 AAATTATTAAAATGTT-GTAT
1 AAAAAATTAAAAT-TTAGTAT
6544312 AAAAAATTA
1 AAAAAATTA
6544321 GACAAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (20 bp):
AAAAAATTAAAATTTAGTAT
Found at i:6549654 original size:24 final size:24
Alignment explanation
Indices: 6549604--6549657 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
6549594 ATCTTCATGT
* *
6549604 TCATCATCTTCATCATCAGAAATA
1 TCATCATCTTCATCACCAGAAACA
*
6549628 TCATCATCTTCAATCACCA-AAGCA
1 TCATCATCTTC-ATCACCAGAAACA
6549652 TCATCA
1 TCATCA
6549658 ATCTCCACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.30
Consensus pattern (24 bp):
TCATCATCTTCATCACCAGAAACA
Found at i:6555321 original size:29 final size:29
Alignment explanation
Indices: 6555279--6555338 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
6555269 AGGAGAAAGA
6555279 GTACACAATCTCCTATTACAAGTTGCCTC
1 GTACACAATCTCCTATTACAAGTTGCCTC
6555308 GTACACAATCTCCTATTACAAGTTGCCTC
1 GTACACAATCTCCTATTACAAGTTGCCTC
6555337 GT
1 GT
6555339 TAAAAACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (29 bp):
GTACACAATCTCCTATTACAAGTTGCCTC
Found at i:6562419 original size:20 final size:20
Alignment explanation
Indices: 6562396--6562436 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
6562386 TTTTCAGAAT
6562396 TTAACCAAATATTTCAAAAC
1 TTAACCAAATATTTCAAAAC
6562416 TTAACCAAATATTTCAAAAC
1 TTAACCAAATATTTCAAAAC
6562436 T
1 T
6562437 GTCAAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (20 bp):
TTAACCAAATATTTCAAAAC
Found at i:6563467 original size:43 final size:42
Alignment explanation
Indices: 6563419--6563572 Score: 123
Period size: 42 Copynumber: 3.6 Consensus size: 42
6563409 CCCTAGACGT
* * *
6563419 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAA-ATCGATGCCTATGTCCCAGACAC
* * * *
6563462 GGTCTTACACG-AAATCAAATACAATG-CTGATGTCCTAGACAT
1 GGTCTTACACGTAATTCAAAT-CGATGCCT-ATGTCCCAGACAC
* ** *
6563504 GGTTTTACACGTAAATCTCAAATCGAAACCTGTGTCCCAGACAC
1 GGTCTTACACGT-AAT-TCAAATCGATGCCTATGTCCCAGACAC
* *
6563548 GGTCTTACACGATATTTCAGATCGA
1 GGTCTTACACG-TAATTCAAATCGA
6563573 AGTCAACGTT
Statistics
Matches: 87, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
41 4 0.05
42 30 0.34
43 18 0.21
44 26 0.30
45 9 0.10
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (42 bp):
GGTCTTACACGTAATTCAAATCGATGCCTATGTCCCAGACAC
Found at i:6563546 original size:44 final size:42
Alignment explanation
Indices: 6563450--6563559 Score: 116
Period size: 44 Copynumber: 2.6 Consensus size: 42
6563440 TCGATGCCTC
* **
6563450 TGTCCCAGACAGGGTCTTACACGAAATCAAATACAATGCTGA
1 TGTCCCAGACACGGTCTTACACGAAATCAAATACAAACCTGA
* * *
6563492 TGTCCTAGACATGGTTTTACACGTAAATCTCAAAT-CGAAACCTG-
1 TGTCCCAGACACGGTCTTACACG-AAA--TCAAATAC-AAACCTGA
6563536 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
6563560 TATTTCAGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 20 0.36
43 4 0.07
44 21 0.38
45 11 0.20
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCAAATACAAACCTGA
Found at i:6563552 original size:86 final size:85
Alignment explanation
Indices: 6563396--6563559 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
6563386 CATAAACAAG
* * **
6563396 TACAATGCCGACGCCCTAGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACA
1 TACAATGCCGACGCCCTAGACATGGTCTTACACGTAATTCAATATCGAAACCTCTGTCCCAGACA
*
6563461 GGGTCTTACACGAAATCAAA
66 CGGTCTTACACGAAATCAAA
* * * * *
6563481 TACAATGCTGATGTCCTAGACATGGTTTTACACGTAAATCTCAA-ATCGAAACCTGTGTCCCAGA
1 TACAATGCCGACGCCCTAGACATGGTCTTACACGT-AAT-TCAATATCGAAACCTCTGTCCCAGA
6563545 CACGGTCTTACACGA
64 CACGGTCTTACACGA
6563560 TATTTCAGAT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 29 0.43
86 34 0.51
87 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (85 bp):
TACAATGCCGACGCCCTAGACATGGTCTTACACGTAATTCAATATCGAAACCTCTGTCCCAGACA
CGGTCTTACACGAAATCAAA
Found at i:6567969 original size:29 final size:29
Alignment explanation
Indices: 6567908--6567969 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
6567898 CCAGCCCATG
*
6567908 TGCCCTAAAAATGGCCACACAAGCCCGTG
1 TGCCCTAAAAATGGCCACACAAGCCCGTA
* * * *
6567937 TGCCTTAAAAATGGCCATACACGCCTGTA
1 TGCCCTAAAAATGGCCACACAAGCCCGTA
6567966 TGCC
1 TGCC
6567970 AGGCCGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.19
Consensus pattern (29 bp):
TGCCCTAAAAATGGCCACACAAGCCCGTA
Found at i:6569079 original size:40 final size:40
Alignment explanation
Indices: 6568983--6569083 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 40
6568973 TATAATTTTG
* * *
6568983 CACACTAAGTGCCTTACATAGCCGAAGCTATCTCGGTCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCT-A
*
6569024 CACACTAAGTGCCATATATAGCCGAAGCTATCTTGAATCT-
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCG-ATCTA
*
6569064 CACACTAAATGCCATATATA
1 CACACTAAGTGCCATATATA
6569084 TATAAATATC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
40 19 0.35
41 32 0.59
42 3 0.06
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTA
Found at i:6577697 original size:21 final size:21
Alignment explanation
Indices: 6577671--6577713 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
6577661 TTCAAGGTGG
*
6577671 AGATTATTGGCAATTATCCAT
1 AGATTATTGGCAATCATCCAT
6577692 AGATTATTGGCAATCATCCAT
1 AGATTATTGGCAATCATCCAT
6577713 A
1 A
6577714 CTTTGGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (21 bp):
AGATTATTGGCAATCATCCAT
Found at i:6582035 original size:25 final size:25
Alignment explanation
Indices: 6582007--6582075 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
6581997 CTAAACGGAA
6582007 AGCACTAACGTGCTAATAAACAAAG
1 AGCACTAACGTGCTAATAAACAAAG
*
6582032 AGCACTAACGTGTTAATAAACAAAG
1 AGCACTAACGTGCTAATAAACAAAG
*
6582057 AGCACTAACGTACTAATAA
1 AGCACTAACGTGCTAATAA
6582076 TCAGATAGCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.48, C:0.19, G:0.14, T:0.19
Consensus pattern (25 bp):
AGCACTAACGTGCTAATAAACAAAG
Found at i:6583138 original size:21 final size:22
Alignment explanation
Indices: 6583103--6583207 Score: 110
Period size: 23 Copynumber: 4.8 Consensus size: 22
6583093 GATCAGTATA
6583103 GACACATAA-GTGCCTGAA-AC
1 GACACATAAGGTGCCTGAATAC
*
6583123 GACACATAAGGTGCCT-AATAT
1 GACACATAAGGTGCCTGAATAC
**
6583144 GACACACGAGGTGCCTGAAATAC
1 GACACATAAGGTGCCTG-AATAC
6583167 GACACATAAAGG-GCCTGATATAC
1 GACACAT-AAGGTGCCTGA-ATAC
* *
6583190 GACACAAAAAGTGCCTGA
1 GACACATAAGGTGCCTGA
6583208 TCGGCAAAGC
Statistics
Matches: 70, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
20 11 0.16
21 21 0.30
22 4 0.06
23 31 0.44
24 3 0.04
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (22 bp):
GACACATAAGGTGCCTGAATAC
Found at i:6583165 original size:23 final size:21
Alignment explanation
Indices: 6583112--6583172 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
6583102 AGACACATAA
**
6583112 GTGCCTGAA-ACGACACATAAG
1 GTGCCT-AATACGACACACGAG
*
6583133 GTGCCTAATATGACACACGAG
1 GTGCCTAATACGACACACGAG
6583154 GTGCCTGAAATACGACACA
1 GTGCCT--AATACGACACA
6583173 TAAAGGGCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.06
21 21 0.64
23 10 0.30
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (21 bp):
GTGCCTAATACGACACACGAG
Found at i:6585827 original size:2 final size:2
Alignment explanation
Indices: 6585820--6585845 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6585810 ATAATGGATG
6585820 GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT
6585846 TTCCACACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:6595690 original size:28 final size:28
Alignment explanation
Indices: 6595650--6595726 Score: 127
Period size: 28 Copynumber: 2.8 Consensus size: 28
6595640 TTAATGCTCA
*
6595650 ATATTTCGCACACTAAGTGCCATACTTG
1 ATATCTCGCACACTAAGTGCCATACTTG
*
6595678 ATATCTCGCACACCAAGTGCCATACTTG
1 ATATCTCGCACACTAAGTGCCATACTTG
*
6595706 ATATCTTGCACACTAAGTGCC
1 ATATCTCGCACACTAAGTGCC
6595727 GTACATAGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
ATATCTCGCACACTAAGTGCCATACTTG
Found at i:6595810 original size:41 final size:40
Alignment explanation
Indices: 6595713--6595848 Score: 186
Period size: 40 Copynumber: 3.4 Consensus size: 40
6595703 TTGATATCTT
* * *
6595713 GCACACTAAGTGCCGTACATAGCTGAAGCTATCTCAAATT-
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTC-AATTC
*
6595753 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCATTCTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAT-TC
*
6595794 GCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA-TC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTC-AATTC
6595834 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
6595849 CAAATAATCG
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.02
40 50 0.57
41 34 0.39
42 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATCTCAATTC
Found at i:6601354 original size:14 final size:15
Alignment explanation
Indices: 6601335--6601390 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
6601325 AATCTTCAAT
6601335 GATATG-CAATCTTA
1 GATATGACAATCTTA
6601349 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
6601366 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
6601384 GATATGA
1 GATATGA
6601391 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:6601379 original size:35 final size:37
Alignment explanation
Indices: 6601333--6601411 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
6601323 ATAATCTTCA
6601333 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
6601369 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
6601405 A-GATATG
1 ATGATATG
6601412 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:6601411 original size:17 final size:19
Alignment explanation
Indices: 6601333--6601404 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
6601323 ATAATCTTCA
6601333 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6601352 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6601369 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6601387 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
6601405 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:6601716 original size:18 final size:19
Alignment explanation
Indices: 6601693--6601728 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6601683 TTTCCCTGAT
*
6601693 TTTTTTTATAT-ATTTTAA
1 TTTTTTTAAATAATTTTAA
6601711 TTTTTTTAAATAATTTTA
1 TTTTTTTAAATAATTTTA
6601729 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTTAAATAATTTTAA
Found at i:6610471 original size:78 final size:78
Alignment explanation
Indices: 6610369--6610820 Score: 545
Period size: 78 Copynumber: 5.6 Consensus size: 78
6610359 TGAAGAAACA
* * * * * *
6610369 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCAAAGACATAACAAATCTGACCTTCAGTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
6610434 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
6610447 GATTTGGCATCTCTGTATTAGACGGGGAGCTGATCGAAGACATAACATG-T-TGGACCTTCATTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACA-GATCT-GACCTTCATTG
* *
6610510 AAGCAAATCTAAGAT
64 AAGCAGATCCAAGAT
* **
6610525 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTGGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
6610590 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
6610603 GATTTGGCATCTTTGTATTAGACGGGGAACAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
6610668 GTAGATCCAAGAT
66 GCAGATCCAAGAT
*
6610681 GATTTGGCATCTCTGTATTAGACTGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATGTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCA----
6610745 TTTACATCGAAGCAGATCCAAGAT
61 --T---T-GAAGCAGATCCAAGAT
* *
6610769 GACATATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--GAGATAACAGAT
1 G----ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT
6610821 TTGGCATCTC
Statistics
Matches: 325, Mismatches: 30, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
77 3 0.01
78 259 0.80
79 1 0.00
84 1 0.00
87 1 0.00
88 16 0.05
90 11 0.03
92 33 0.10
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:6610789 original size:92 final size:91
Alignment explanation
Indices: 6610682--6610902 Score: 272
Period size: 90 Copynumber: 2.4 Consensus size: 91
6610672 ATCCAAGATG
* *
6610682 ATTTGGCATCTCTGTATTAGACTGGGAGCAGATCGAAGACATAACAGA-TTGG-ACCTTCATGTG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTGGCATC-TC-TGT-
* *
6610745 TTTACATC-GAAGCAGATCCAAGATGACAT
63 ATTACA-CGGAAGCAGATCCAAGATAACAT
* *
6610774 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--GAGATAACAGATTTGGCATCTCTGTATT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTGGCATCTCTGTATT
* *
6610837 ACACGGGGAGCAGATCGAAGATAACAT
66 ACAC-GGAAGCAGATCCAAGATAACAT
* *
6610864 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA
6610903 TAGTAGATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
88 1 0.01
89 5 0.04
90 63 0.56
91 6 0.05
92 37 0.33
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (91 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTGGCATCTCTGTATT
ACACGGAAGCAGATCCAAGATAACAT
Found at i:6610843 original size:45 final size:45
Alignment explanation
Indices: 6610682--6610904 Score: 211
Period size: 45 Copynumber: 4.9 Consensus size: 45
6610672 ATCCAAGATG
* * *
6610682 ATTTGGCATCTCTGTATTAGACTGGGAGCAGATCGAAGACATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAG--ATAACAT
* * * * * * *
6610729 A-TTGG-ACCTTCATGTGTTTACATC--GAAGCAGATCCAAGATGACAT
1 ATTTGGCATC-TC-TGT-ATTAGA-CGGGGAGCAAATCGAAGATAACAT
* *
6610774 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAT
* *
6610819 ATTTGGCATCTCTGTATTACACGGGGAGCAGATCGAAGATAACAT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAT
* * *
6610864 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATA
6610905 GTAGATATCG
Statistics
Matches: 145, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 105 0.72
46 12 0.08
47 18 0.12
48 4 0.03
49 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAT
Found at i:6611330 original size:35 final size:37
Alignment explanation
Indices: 6611259--6611356 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
6611249 ATAATCTTCA
6611259 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
6611297 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
6611332 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
6611357 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:6611356 original size:17 final size:19
Alignment explanation
Indices: 6611259--6611349 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
6611249 ATAATCTTCA
6611259 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6611278 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6611297 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6611314 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6611332 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
6611350 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:6611375 original size:22 final size:22
Alignment explanation
Indices: 6611259--6611372 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
6611249 ATAATCTTCA
6611259 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
6611278 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
6611297 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
6611314 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
6611332 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
6611354 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
6611373 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:6611660 original size:18 final size:19
Alignment explanation
Indices: 6611637--6611673 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
6611627 TGTTTCCCTG
*
6611637 ATTTTTTTATAT-ATTTTA
1 ATTTTTTTAAATAATTTTA
6611655 ATTTTTTTAAATAATTTTA
1 ATTTTTTTAAATAATTTTA
6611674 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTAAATAATTTTA
Found at i:6615816 original size:29 final size:29
Alignment explanation
Indices: 6615774--6615830 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
6615764 CCATTTAACT
*
6615774 CTTTTTTCTTTTTGGTTACATGAACCAAA
1 CTTTTTTCCTTTTGGTTACATGAACCAAA
6615803 CTTTTTTCCTTTTGGTTACATGAACCAA
1 CTTTTTTCCTTTTGGTTACATGAACCAA
6615831 TTAATTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (29 bp):
CTTTTTTCCTTTTGGTTACATGAACCAAA
Found at i:6623861 original size:21 final size:21
Alignment explanation
Indices: 6623836--6623887 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
6623826 CTCTCTTAAC
6623836 AAAAATTAAAAAATAATTTTA
1 AAAAATTAAAAAATAATTTTA
* *
6623857 AAAAATT-CAAAATAATTTTT
1 AAAAATTAAAAAATAATTTTA
*
6623877 AAAATTTAAAA
1 AAAAATTAAAA
6623888 TATTTATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAATTAAAAAATAATTTTA
Found at i:6623868 original size:20 final size:20
Alignment explanation
Indices: 6623845--6623899 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
6623835 CAAAAATTAA
6623845 AAAATAATTTTAAAAAATTC
1 AAAATAATTTTAAAAAATTC
* *
6623865 AAAATAATTTT-TAAAATTT
1 AAAATAATTTTAAAAAATTC
6623884 AAAAT-ATTTATAAAAA
1 AAAATAATTT-TAAAAA
6623900 TCCCAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.13
19 12 0.40
20 14 0.47
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATAATTTTAAAAAATTC
Found at i:6623897 original size:18 final size:19
Alignment explanation
Indices: 6623845--6623898 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
6623835 CAAAAATTAA
*
6623845 AAAATAATTTTAAAAAATTC
1 AAAATAA-TTTATAAAATTC
* *
6623865 AAAATAATTTTTAAAATTT
1 AAAATAATTTATAAAATTC
6623884 AAAAT-ATTTATAAAA
1 AAAATAATTTATAAAA
6623899 ATCCCAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 9 0.30
19 14 0.47
20 7 0.23
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATAATTTATAAAATTC
Found at i:6623954 original size:10 final size:9
Alignment explanation
Indices: 6623917--6623995 Score: 59
Period size: 9 Copynumber: 8.0 Consensus size: 9
6623907 ATTTATATTT
6623917 TTTAAAAAA
1 TTTAAAAAA
*
6623926 ATTATAAAAA
1 TTTA-AAAAA
6623936 TTTCAAAAAAA
1 TTT--AAAAAA
6623947 TTCTAAAAAA
1 TT-TAAAAAA
6623957 TATATAAAAAAA
1 T-T-T-AAAAAA
*
6623969 GTTAAAAAA
1 TTTAAAAAA
*
6623978 GTTAAAAAA
1 TTTAAAAAA
*
6623987 GTTAAAAAA
1 TTTAAAAAA
6623996 GTTCTAGAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
9 27 0.45
10 15 0.25
11 10 0.17
12 8 0.13
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.27
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:6623984 original size:8 final size:9
Alignment explanation
Indices: 6623963--6623998 Score: 72
Period size: 9 Copynumber: 4.0 Consensus size: 9
6623953 AAAATATATA
6623963 AAAAAAGTT
1 AAAAAAGTT
6623972 AAAAAAGTT
1 AAAAAAGTT
6623981 AAAAAAGTT
1 AAAAAAGTT
6623990 AAAAAAGTT
1 AAAAAAGTT
6623999 CTAGAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (9 bp):
AAAAAAGTT
Found at i:6624757 original size:26 final size:26
Alignment explanation
Indices: 6624721--6624830 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6624711 TGATACAAAT
6624721 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6624747 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6624773 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6624799 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6624825 TGATAA
1 TGATAA
6624831 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:6632052 original size:5 final size:5
Alignment explanation
Indices: 6632044--6632068 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6632034 AATACAGTGG
6632044 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
6632069 ATCCATATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:6640666 original size:6 final size:6
Alignment explanation
Indices: 6640658--6640701 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
6640648 TTTAATTTTT
* * * *
6640658 TTAGGT TTAGGC TTAGGG TTAGGG TTAGAG TTAGGA TTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TT
6640702 TTATTAGTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.20, C:0.02, G:0.39, T:0.39
Consensus pattern (6 bp):
TTAGGG
Found at i:6653038 original size:10 final size:10
Alignment explanation
Indices: 6653023--6653047 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6653013 ATCGGCAAAA
6653023 TAAAATATTT
1 TAAAATATTT
6653033 TAAAATATTT
1 TAAAATATTT
6653043 TAAAA
1 TAAAA
6653048 ATTAAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAAATATTT
Found at i:6658089 original size:11 final size:11
Alignment explanation
Indices: 6658050--6658090 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
6658040 ATTTTTAAAA
6658050 TTTTAAATTTT
1 TTTTAAATTTT
*
6658061 TTTTAGAATTAT
1 TTTTA-AATTTT
*
6658073 TGTTAAATTTT
1 TTTTAAATTTT
6658084 TTTTAAA
1 TTTTAAA
6658091 AAAATCAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (11 bp):
TTTTAAATTTT
Found at i:6658596 original size:2 final size:2
Alignment explanation
Indices: 6658589--6658616 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6658579 TTTCAACTTT
6658589 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6658617 AGAATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6658955 original size:56 final size:55
Alignment explanation
Indices: 6658892--6658996 Score: 149
Period size: 56 Copynumber: 1.9 Consensus size: 55
6658882 TTTTTGAGAT
* * *
6658892 TAATGAGACTTTTTAAAAATGTTAAGAGTGTTTAATT-AATTTTTTTTAAAAAGGTA
1 TAATGAGAATTTTCAAAAAT-TTAAG-GGGTTTAATTAAATTTTTTTTAAAAAGGTA
*
6658948 TAATGAGAATTTTCAAAAATTTGAGGGGTTTAATTAAATTTTTTTTAAA
1 TAATGAGAATTTTCAAAAATTTAAGGGGTTTAATTAAATTTTTTTTAAA
6658997 GCTTCAAGGG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
54 9 0.20
55 17 0.39
56 18 0.41
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (55 bp):
TAATGAGAATTTTCAAAAATTTAAGGGGTTTAATTAAATTTTTTTTAAAAAGGTA
Found at i:6659042 original size:12 final size:11
Alignment explanation
Indices: 6659014--6659038 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6659004 GGGAGAAATG
6659014 AAATTTTTCAA
1 AAATTTTTCAA
6659025 AAATTTTTCAA
1 AAATTTTTCAA
6659036 AAA
1 AAA
6659039 ATTTGGGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (11 bp):
AAATTTTTCAA
Found at i:6659387 original size:15 final size:15
Alignment explanation
Indices: 6659367--6659400 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6659357 TTATTGTTCA
*
6659367 AGAATAGCTATGTCC
1 AGAATAACTATGTCC
*
6659382 AGAATAACTATGTTC
1 AGAATAACTATGTCC
6659397 AGAA
1 AGAA
6659401 CAAGACTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (15 bp):
AGAATAACTATGTCC
Found at i:6669570 original size:46 final size:45
Alignment explanation
Indices: 6669500--6669769 Score: 270
Period size: 46 Copynumber: 5.9 Consensus size: 45
6669490 TTCTGAAATG
* * *
6669500 AAATGTGTAAAACCATGGTTGAAAGACACCATGGCAACATGATAT
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
* * *
6669545 AAATTGTGTAAGACTATGGTTGAAAGATACCATGGCAACAGGATAT
1 AAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
* **
6669591 AAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATGG
1 -AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
* * * ** * *
6669637 GAATGAATAAGACCATGGTTGAAAGATACCATGTCAATGTAACAT
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
** * * *
6669682 GAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGA
1 -AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA-T
* * * * *
6669729 AAATGAGTAAGACCATAGTCGAAAGACACTATGGCATCATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
6669770 TCAAAGATAA
Statistics
Matches: 188, Mismatches: 33, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
45 38 0.20
46 147 0.78
47 3 0.02
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (45 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
Found at i:6669695 original size:91 final size:92
Alignment explanation
Indices: 6669511--6669764 Score: 278
Period size: 91 Copynumber: 2.8 Consensus size: 92
6669501 AATGTGTAAA
* * ** *
6669511 ACCATGGTTGAAAGACACCATGGCAACATGATATAAATTGTGTAAGACTATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGATAGAAATTGAATAAGACCATGGTTGAAAGATACC
* * ***
6669576 ATGGCAACAGGATATAAAATGTGTAAG
66 ATGGCAACAGAACATAAAATGAACAAG
* *
6669603 ACCATGGTTGAAAGATACCATGGCAACATGATGGGAA-TGAATAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGATAGAAATTGAATAAGACCATGGTTGAAAGATACC
* * *
6669667 ATGTCAA-TGTAACATGAAATGAACAAG
66 ATGGCAACAG-AACATAAAATGAACAAG
* * * * * * * *
6669694 ACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGTAAGACCATAGTCGAAAGACACT
1 ACCATGGTTGAAAGATACCATGGCAACATGATAGAAATTGAATAAGACCATGGTTGAAAGATACC
6669759 ATGGCA
66 ATGGCA
6669765 TCATGTCAAA
Statistics
Matches: 135, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
90 1 0.01
91 74 0.55
92 60 0.44
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (92 bp):
ACCATGGTTGAAAGATACCATGGCAACATGATAGAAATTGAATAAGACCATGGTTGAAAGATACC
ATGGCAACAGAACATAAAATGAACAAG
Found at i:6672256 original size:21 final size:21
Alignment explanation
Indices: 6672230--6672282 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
6672220 CGCTGTTTCT
* *
6672230 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACA
*
6672251 AATCTCACTGCTACAGTAACA
1 AATCTCACCGCTACAGTAACA
6672272 AATCTCACCGC
1 AATCTCACCGC
6672283 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACA
Found at i:6679767 original size:24 final size:24
Alignment explanation
Indices: 6679735--6679782 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
6679725 ATGTGGCAAA
6679735 AACGCTCCCCTAGGGGCGCATTTT
1 AACGCTCCCCTAGGGGCGCATTTT
6679759 AACGCTCCCCTAGGGGCGCATTTT
1 AACGCTCCCCTAGGGGCGCATTTT
6679783 GCTCCGTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (24 bp):
AACGCTCCCCTAGGGGCGCATTTT
Found at i:6680033 original size:33 final size:34
Alignment explanation
Indices: 6679949--6680073 Score: 105
Period size: 33 Copynumber: 3.7 Consensus size: 34
6679939 AAAGCTTTAA
* *
6679949 AAGTAAATTAGGATTT-AGTGTTCTTTTTAA-AAATT
1 AAGTAAATTAGGGTTTAAG-G-T-TTTTAAATAAATT
* ** *
6679984 AATTAAATTAAAGTTTATGGTTTTTAAATAAATT
1 AAGTAAATTAGGGTTTAAGGTTTTTAAATAAATT
6680018 AAGT-AATTAGGGTTTAAAGG-TTTTAAATAAATT
1 AAGTAAATTAGGGTTT-AAGGTTTTTAAATAAATT
* * *
6680051 AATTAAATTAGGGATTAGGGTTT
1 AAGTAAATTAGGGTTTAAGGTTT
6680074 AGGGTTAAAA
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
33 34 0.47
34 24 0.33
35 13 0.18
36 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.16, T:0.43
Consensus pattern (34 bp):
AAGTAAATTAGGGTTTAAGGTTTTTAAATAAATT
Found at i:6680305 original size:126 final size:126
Alignment explanation
Indices: 6680164--6680412 Score: 374
Period size: 126 Copynumber: 2.0 Consensus size: 126
6680154 TTTTACCCTG
* * * * *
6680164 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTCAAAAATGCTTTAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTATGAACAAATAATGTAAAAAATGCTTCAAGCAAGATGCAC
*
6680229 TGTAAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTCTTTTTT-GACAGTAGTTCTTA
66 TGTAAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCT-TTTTTTCGACAGTAGTTCTTA
* *
6680290 AAAAAATATTTTTGAGAAGACGTTTATGAATAAATAATGTAAAAAATGCTTCAAGCAAGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTATGAACAAATAATGTAAAAAATGCTTCAAGCAAGATGCAC
* * * *
6680355 TGTCAGCAAAATTATTGAAAAAGGCTCCCACGTGGACGCTTTTTTTCTACAGTAGTTC
66 TGTAAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTTTTTTTCGACAGTAGTTC
6680413 ATGTTTGGCC
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
125 6 0.05
126 104 0.95
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTATGAACAAATAATGTAAAAAATGCTTCAAGCAAGATGCAC
TGTAAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTTTTTTTCGACAGTAGTTCTTA
Found at i:6683458 original size:24 final size:23
Alignment explanation
Indices: 6683402--6683458 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
6683392 AAGAACTTCT
*
6683402 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAACA
6683425 ATTTAGTATT-AAAATATTAAAAACA
1 ATTT--TATTAAAAATA-TAAAAACA
6683450 ACTTTTATT
1 A-TTTTATT
6683459 TTATTAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.14
24 10 0.34
25 12 0.41
26 3 0.10
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAACA
Found at i:6683896 original size:18 final size:18
Alignment explanation
Indices: 6683855--6683897 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
6683845 GATTGGGAAA
* * *
6683855 AGGAAACATCTAAGGGTT
1 AGGATACATATAAGGGCT
*
6683873 ATGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
6683891 AGGATAC
1 AGGATAC
6683898 GTACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:6691068 original size:13 final size:14
Alignment explanation
Indices: 6691050--6691082 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
6691040 GTTCCAATGC
6691050 ATGATTTTAA-AAG
1 ATGATTTTAACAAG
6691063 ATGATTTTAATCAAG
1 ATGATTTTAA-CAAG
6691078 ATGAT
1 ATGAT
6691083 ATAATTGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
15 8 0.44
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.39
Consensus pattern (14 bp):
ATGATTTTAACAAG
Found at i:6697557 original size:18 final size:18
Alignment explanation
Indices: 6697527--6697715 Score: 93
Period size: 19 Copynumber: 10.2 Consensus size: 18
6697517 AAGAAACATT
*
6697527 ATCAAAA-CTAGAATCAAA
1 ATCAAAATC-AGAATCAGA
* *
6697545 ATGAGAATCAGAATCAGA
1 ATCAAAATCAGAATCAGA
* *
6697563 ATCAGAATCAG-GTGACAGA
1 ATCAAAATCAGAAT--CAGA
*
6697582 ATCAAAATTAGAATCAGA
1 ATCAAAATCAGAATCAGA
*
6697600 ATCAGAATCAGGTAA-CAGA
1 ATCAAAATCA-G-AATCAGA
* *
6697619 ATCAGAATCAGTATCAGGTA
1 ATCAAAATCAGAATCA-G-A
*
6697639 A-CAGAATCAGAATCAGA
1 ATCAAAATCAGAATCAGA
* * *
6697656 ACCAGAATCAGAATTAGGTA
1 ATCAAAATCAGAATCA-G-A
* *
6697676 A-CAGAATCAGAATCAGT
1 ATCAAAATCAGAATCAGA
*
6697693 ATCAGGTAA-CAGAATCAGA
1 ATCA--AAATCAGAATCAGA
6697712 ATCA
1 ATCA
6697716 GAATGTCAAT
Statistics
Matches: 139, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
17 5 0.04
18 55 0.40
19 70 0.50
20 9 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (18 bp):
ATCAAAATCAGAATCAGA
Found at i:6697559 original size:6 final size:6
Alignment explanation
Indices: 6697536--6697719 Score: 162
Period size: 6 Copynumber: 29.8 Consensus size: 6
6697526 TATCAAAACT
* * *
6697536 AGAATC AAAATG AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
6697585 AAAATT AGAATC AGAATC AGAATC AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
6697634 AGGTAA-C AGAATC AGAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
6697684 AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
6697720 GTCAATGCAA
Statistics
Matches: 145, Mismatches: 18, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.06
6 115 0.79
7 14 0.10
8 7 0.05
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:6697584 original size:25 final size:24
Alignment explanation
Indices: 6697536--6697719 Score: 162
Period size: 25 Copynumber: 7.5 Consensus size: 24
6697526 TATCAAAACT
* *
6697536 AGAATCAAAATGAGAATCAGAATC
1 AGAATCAGAATCAGAATCAGAATC
*
6697560 AGAATCAGAATCAG-GTGACAGAATC
1 AGAATCAGAATCAGAAT--CAGAATC
* *
6697585 AAAATTAGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATCAGAATC
*
6697609 AGGTAA-CAGAATCAGAATCAGTATC
1 A-G-AATCAGAATCAGAATCAGAATC
*
6697634 AGGTAA-CAGAATCAGAATCAGAACC
1 A-G-AATCAGAATCAGAATCAGAATC
*
6697659 AGAATCAGAATTAGGTAA-CAGAATC
1 AGAATCAGAATCA-G-AATCAGAATC
*
6697684 AGAATCAGTATCAGGTAA-CAGAATC
1 AGAATCAGAATCA-G-AATCAGAATC
6697709 AGAATCAGAAT
1 AGAATCAGAAT
6697720 GTCAATGCAA
Statistics
Matches: 136, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
23 3 0.02
24 28 0.21
25 100 0.74
26 5 0.04
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGAATC
Found at i:6697604 original size:37 final size:37
Alignment explanation
Indices: 6697550--6697719 Score: 138
Period size: 37 Copynumber: 4.6 Consensus size: 37
6697540 TCAAAATGAG
*
6697550 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* *
6697587 AATTAGAATCAGAATCAGAATCAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* * *
6697624 AATCAGTATCAGGTAA-CAGAATCA-G-AATCAGAACCAG
1 AATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATCAA
* * *
6697661 AATCAGAATTAGGTAA-CAGAATCA-G-AATCAGTATCAGGT
1 AATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATCA--A
6697700 AA-CAGAATCAGAATCAGAAT
1 AATCAGAATCAGAATCAGAAT
6697720 GTCAATGCAA
Statistics
Matches: 115, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
36 4 0.03
37 91 0.79
38 16 0.14
39 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:6697628 original size:62 final size:62
Alignment explanation
Indices: 6697553--6697719 Score: 280
Period size: 62 Copynumber: 2.7 Consensus size: 62
6697543 AAATGAGAAT
* * * *
6697553 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATTAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
6697615 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
6697677 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
6697720 GTCAATGCAA
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 98 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:6697710 original size:19 final size:19
Alignment explanation
Indices: 6697559--6697691 Score: 130
Period size: 19 Copynumber: 6.8 Consensus size: 19
6697549 GAATCAGAAT
*
6697559 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
6697578 CAGAATCAAAATTA-G-AA
1 CAGAATCAGAATCAGGTAA
6697595 TCAGAATCAGAATCAGGTAA
1 -CAGAATCAGAATCAGGTAA
6697615 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
6697640 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
6697657 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
6697677 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
6697692 TATCAGGTAA
Statistics
Matches: 95, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.03
18 27 0.28
19 41 0.43
20 4 0.04
21 1 0.01
23 1 0.01
25 18 0.19
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:6697994 original size:27 final size:26
Alignment explanation
Indices: 6697946--6697997 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
6697936 GCGAGGCTGC
*
6697946 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
6697972 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
6697998 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:6698299 original size:27 final size:27
Alignment explanation
Indices: 6698242--6698498 Score: 291
Period size: 27 Copynumber: 9.3 Consensus size: 27
6698232 GGGGTAAAAT
* * * *
6698242 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
6698268 CGTAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
6698295 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
6698322 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
6698349 GGTAATTATACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
6698376 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
6698403 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
6698430 GGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 GGTA-------A-TTCTACCCTACAGGGGTATTTC
*
6698465 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
6698492 GGTAATT
1 GGTAATT
6698499 TTGTAAATCA
Statistics
Matches: 197, Mismatches: 25, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
26 13 0.07
27 158 0.80
35 26 0.13
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:6698434 original size:35 final size:35
Alignment explanation
Indices: 6698395--6698472 Score: 156
Period size: 35 Copynumber: 2.2 Consensus size: 35
6698385 ACCCTACAGG
6698395 GGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
6698430 GGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
6698465 GGTATTTC
1 GGTATTTC
6698473 TACCCTACAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.41
Consensus pattern (35 bp):
GGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
Found at i:6698550 original size:27 final size:26
Alignment explanation
Indices: 6698483--6698990 Score: 93
Period size: 27 Copynumber: 18.8 Consensus size: 26
6698473 TACCCTACAG
*
6698483 GGGTATTTCGGTAATTTTGTAAATCAA
1 GGGTATTT-GGTAATTCTGTAAATCAA
** *
6698510 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGT-ATTTGGTAATTCTGTAAATCAA
*
6698537 GGGTACTTTGGTAATT-T-TACAAGTCGA
1 GGGTA-TTTGGTAATTCTGTA-AA-TCAA
** * **
6698564 GGGTATTTCAATAATT-T-TACAGGTTGA
1 GGGTATTT-GGTAATTCTGTA-A-ATCAA
* ** *
6698591 GGGTATTTTAGTAATT-TCACAAATCAG
1 GGGTA-TTTGGTAATTCT-GTAAATCAA
* *
6698618 GGGTATTTTGGTAATTTTCG-AAA-CTAG
1 GGGTA-TTTGGTAATTCT-GTAAATC-AA
* * ** * *
6698645 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* *
6698672 GGGTATTTTGGTAATT-T-TACAAACTA
1 GGGTA-TTTGGTAATTCTGTA-AATCAA
* * *
6698698 GGGGTATTTTGGTAATTTTATAAACCAA
1 G-GGTA-TTTGGTAATTCTGTAAATCAA
* * ** *
6698726 TGGTATTTTAGTAATT-TACAAACCAA
1 GGGTA-TTTGGTAATTCTGTAAATCAA
*
6698752 GGGTATTTTGGTAATT-TGGTAAACCAA
1 GGGTA-TTTGGTAATTCT-GTAAATCAA
* * * *
6698779 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* * * *
6698806 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* * ** *
6698833 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* *
6698860 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* * ** * *
6698887 TGGTATTTTGGTAATTGTACAAACCAG
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* * * *
6698914 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTA-TTTGGTAATTCTGTAAATCAA
* * ** * *
6698941 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTA-TTTGGTAATTCTGTAAATCAA
*
6698968 GGGTATTTTGGTAATTCGGTAAA
1 GGGTA-TTTGGTAATTCTGTAAA
6698991 CTAAAGTATT
Statistics
Matches: 397, Mismatches: 65, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.01
26 37 0.09
27 339 0.85
28 15 0.04
29 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTGGTAATTCTGTAAATCAA
Found at i:6698649 original size:81 final size:81
Alignment explanation
Indices: 6698534--6698976 Score: 467
Period size: 81 Copynumber: 5.5 Consensus size: 81
6698524 TTCTGTAAAT
* * ** * *****
6698534 CAAGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGTTGAGGGTATT
1 CAAGGGTATTTTGGTAATTTTATAAACCAG-GGGTATTTTAATAATTTTACAAACCAAGGGTATT
* *
6698598 TTAGTAATTTCACAAAT
65 TTAGTAATTTTACAAAC
* ** * * *
6698615 CAGGGGTATTTTGGTAATTTTCGAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAATAATTTTACAAACCAAGGGTATTT
*
6698680 TGGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
* * ** *
6698696 TAGGGGTATTTTGGTAATTTTATAAACCAATGGTATTTTAGTAA-TTTACAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAATAATTTTACAAACCAAGGGTATTT
* ***
6698760 TGGTAATTTGGTAAAC
66 TAGTAATTTTACAAAC
** * *
6698776 CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAATAATTTTACAAACCAAGGGTATTT
6698841 TAGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
* ** ** * *
6698857 CAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTGTACAAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAATAATTTTACAAACCAAGGGTATTT
* * *
6698922 TGGTGATTTTATAAAC
66 TAGTAATTTTACAAAC
* *
6698938 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTT
6698977 GGTAATTCGG
Statistics
Matches: 304, Mismatches: 56, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
80 70 0.23
81 233 0.77
82 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAATAATTTTACAAACCAAGGGTATTT
TAGTAATTTTACAAAC
Found at i:6698991 original size:27 final size:27
Alignment explanation
Indices: 6698590--6698983 Score: 484
Period size: 27 Copynumber: 14.6 Consensus size: 27
6698580 TTACAGGTTG
* * * *
6698590 AGGGTATTTTAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* ** *
6698617 GGGGTATTTTGGTAATTTTCGAAACTA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
6698644 GGGGTATTTTGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
6698671 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
6698698 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
6698725 ATGGTATTTTAGTAA-TTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
**
6698751 AGGGTATTTTGGTAATTTGGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
6698778 AGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
6698805 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
6698832 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
6698859 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
6698886 ATGGTATTTTGGTAATTGTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
6698913 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
6698940 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
6698967 GGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATT
6698984 CGGTAAACTA
Statistics
Matches: 316, Mismatches: 50, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 23 0.07
27 293 0.93
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACCA
Found at i:6698991 original size:54 final size:54
Alignment explanation
Indices: 6698591--6698983 Score: 547
Period size: 54 Copynumber: 7.3 Consensus size: 54
6698581 TACAGGTTGA
* * * * * *
6698591 GGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTT-CGAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTAC-AAACCAG
* * * *
6698645 GGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
6698699 GGGTATTTTGGTAATTTTATAAACCAATGGTATTTTAGTAA-TTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
** *
6698752 GGGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
6698806 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
6698860 GGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTGTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
6698914 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
6698968 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
6698984 CGGTAAACTA
Statistics
Matches: 302, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
53 47 0.16
54 254 0.84
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:6704605 original size:34 final size:34
Alignment explanation
Indices: 6704566--6704634 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
6704556 GTTGATGTTG
*
6704566 TTACTAATAAATTCATGGCAACTCAGTAATTTGC
1 TTACTAATAAATTCAAGGCAACTCAGTAATTTGC
*
6704600 TTACTAATAAATTCAAGGCAACTGAGTAATTTGC
1 TTACTAATAAATTCAAGGCAACTCAGTAATTTGC
6704634 T
1 T
6704635 AACTTATGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (34 bp):
TTACTAATAAATTCAAGGCAACTCAGTAATTTGC
Found at i:6710907 original size:46 final size:47
Alignment explanation
Indices: 6710820--6711013 Score: 138
Period size: 44 Copynumber: 4.3 Consensus size: 47
6710810 CATACTGAAA
* * *
6710820 TCTTCGATCTGTTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATG
1 TCTTCGATCTGTTTCGCTGTAAACACAGGAATGCCAAATCTGCTATG
6710867 TCTTCGATCTGTTTC-CTGTAAACACAGCG-ATGCCAAATCTGCTA--
1 TCTTCGATCTGTTTCGCTGTAAACACAG-GAATGCCAAATCTGCTATG
* * * * * * **
6710911 TCTTC-AACT-TGTTCCCTATAAACACAGGGATGTC--A--TGTTAAAA
1 TCTTCGATCTGT-TTCGCTGTAAACACAGGAATGCCAAATCTGCT-ATG
* * ** * *
6710954 TCTTTGATCTGCTTCGCTGTAAGTACAGGAATGTCAGATCTGCTATG
1 TCTTCGATCTGTTTCGCTGTAAACACAGGAATGCCAAATCTGCTATG
6711001 TCTTCGATCTGTT
1 TCTTCGATCTGTT
6711014 CTCCGTCGAA
Statistics
Matches: 114, Mismatches: 20, Indels: 26
0.71 0.12 0.16
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 2 0.02
43 11 0.10
44 41 0.36
46 25 0.22
47 28 0.25
48 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (47 bp):
TCTTCGATCTGTTTCGCTGTAAACACAGGAATGCCAAATCTGCTATG
Found at i:6710931 original size:134 final size:134
Alignment explanation
Indices: 6710768--6711013 Score: 402
Period size: 134 Copynumber: 1.8 Consensus size: 134
6710758 GGAGATGTCG
* * *
6710768 AATCTACTATCTTCAACTTGTTCCCTATAAACATACGGATGCCATACTGAAATCTTCGATCTGTT
1 AATCTACTATCTTCAACTTGTTCCCTATAAACACACGGATGCCATACTAAAATCTTCGATCTGCT
6710833 TCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTTCCTGTAAACACAGCGAT
66 TCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTTCCTGTAAACACAGCGAT
6710898 GCCA
131 GCCA
* * * ** *
6710902 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGTCATGTTAAAATCTTTGATCTGCT
1 AATCTACTATCTTCAACTTGTTCCCTATAAACACACGGATGCCATACTAAAATCTTCGATCTGCT
*
6710967 TCGCTGTAAGTACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTT
66 TCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTT
6711014 CTCCGTCGAA
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
134 102 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (134 bp):
AATCTACTATCTTCAACTTGTTCCCTATAAACACACGGATGCCATACTAAAATCTTCGATCTGCT
TCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTTCCTGTAAACACAGCGAT
GCCA
Found at i:6710935 original size:44 final size:44
Alignment explanation
Indices: 6710768--6710942 Score: 117
Period size: 44 Copynumber: 3.9 Consensus size: 44
6710758 GGAGATGTCG
* *
6710768 AATCTACTATCTTCAA-CTTGTTCCCTATAAACATA-CGGATGCCA
1 AATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGC-GATGCCA
* ** * * * * *
6710812 TA-CTGAAATCTTCGATCTGTTTCGCTGTAAGCACAG-GAATGTCA
1 AATCTGCTATCTTCAATCTG-TTCCCTATAAACACAGCG-ATGCCA
* * * *
6710856 GATCTGCTATGTCTTCGATCTGTTTCCTGTAAACACAGCGATGCCA
1 AATCTGCTA--TCTTCAATCTGTTCCCTATAAACACAGCGATGCCA
*
6710902 AATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATG
1 AATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGCGATG
6710943 TCATGTTAAA
Statistics
Matches: 100, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
43 13 0.13
44 45 0.45
45 4 0.04
46 26 0.26
47 12 0.12
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (44 bp):
AATCTGCTATCTTCAATCTGTTCCCTATAAACACAGCGATGCCA
Done.