Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 231 of 311
Found at i:78200618 original size:42 final size:42
Alignment explanation
Indices: 78200510--78200669 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 42
78200500 AGCTATTAGA
* * * * * *
78200510 ATGCCAACATCCCAGACATGGTTTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATA-CG
78200553 ATGCC-ACTGTCCCGAATA-G-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCC-AA-ACGTGGTCTTACACGAAATCAAATACG
*
78200595 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAA-CTATAATTCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACG-AAATC-A-AATACG
* **
78200639 ATGCCAACGTACCAGGCGTGGTCTTACACGA
1 ATGCCAACGTCCCAAACGTGGTCTTACACGA
78200670 TAACATATGT
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 26 0.27
43 34 0.35
44 33 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATACG
Found at i:78200659 original size:44 final size:42
Alignment explanation
Indices: 78200572--78200669 Score: 126
Period size: 44 Copynumber: 2.3 Consensus size: 42
78200562 TCCCGAATAG
*
78200572 GGTCTTACACGAAATCAAATACGATGCCAACGTCCCAAACGT
1 GGTCTTACACGAAATCAAATACGATGCCAACGTACCAAACGT
* **
78200614 GGTCTTACACGTAAA-CTATAATTCGATGCCAACGTACCAGGCGT
1 GGTCTTACACG-AAATC-A-AATACGATGCCAACGTACCAAACGT
78200658 GGTCTTACACGA
1 GGTCTTACACGA
78200670 TAACATATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 12 0.24
43 5 0.10
44 32 0.65
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAACGTACCAAACGT
Found at i:78202245 original size:7 final size:7
Alignment explanation
Indices: 78202233--78202281 Score: 80
Period size: 7 Copynumber: 6.9 Consensus size: 7
78202223 AGTAACTGGT
78202233 ACCCTAA
1 ACCCTAA
78202240 ACCCTAA
1 ACCCTAA
*
78202247 ACTCTAA
1 ACCCTAA
78202254 ACCCTAAA
1 ACCCT-AA
78202262 ACCCTAA
1 ACCCTAA
78202269 ACCCTAA
1 ACCCTAA
78202276 ACCCTA
1 ACCCTA
78202282 CGCTAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (7 bp):
ACCCTAA
Found at i:78202266 original size:22 final size:22
Alignment explanation
Indices: 78202233--78202281 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
78202223 AGTAACTGGT
*
78202233 ACCCTAAACCCTAAACTCT-AA
1 ACCCTAAACCCTAAACCCTAAA
78202254 ACCCTAAAACCCTAAACCCT-AA
1 ACCCT-AAACCCTAAACCCTAAA
78202276 ACCCTA
1 ACCCTA
78202282 CGCTAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (22 bp):
ACCCTAAACCCTAAACCCTAAA
Found at i:78208162 original size:42 final size:42
Alignment explanation
Indices: 78208054--78208213 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 42
78208044 AATTCGTAAA
* * * *
78208054 ATGCCAACATCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATAT-G
78208097 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATG
* *
78208139 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCA-AA-TATG
* *
78208183 ATGCCAACGTCTCAGACGTGATCTTACACGA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA
78208214 TAACACATAT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 41 0.41
44 31 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATG
Found at i:78208199 original size:86 final size:85
Alignment explanation
Indices: 78208054--78208213 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
78208044 AATTCGTAAA
* * *
78208054 ATGCCAACATCTCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAC-GTGA
78208118 TCTTACACGAAATCAAATATG
65 TCTTACACGAAATCAAATATG
* * * *
78208139 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCTCAGACGT
1 ATGCCAACATCCCAGACGTGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGACGT
78208202 GATCTTACACGA
63 GATCTTACACGA
78208214 TAACACATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 28 0.44
86 32 0.50
87 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACGTGAT
CTTACACGAAATCAAATATG
Found at i:78209949 original size:26 final size:26
Alignment explanation
Indices: 78209915--78209968 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
78209905 GAAAAAGCTA
78209915 AAATGTTAGTAAAGAAAAATAAAAAC
1 AAATGTTAGTAAAGAAAAATAAAAAC
78209941 AAATGTTAGTAAAGAAAAATAAAAAC
1 AAATGTTAGTAAAGAAAAATAAAAAC
78209967 AA
1 AA
78209969 CTATAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.19
Consensus pattern (26 bp):
AAATGTTAGTAAAGAAAAATAAAAAC
Found at i:78213424 original size:20 final size:20
Alignment explanation
Indices: 78213377--78213424 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
78213367 CTACTAGTGT
78213377 AGTTAATTAGACTTTGATTA
1 AGTTAATTAGACTTTGATTA
*
78213397 AGTGAATTAG-C-TTGAATTA
1 AGTTAATTAGACTTTG-ATTA
78213416 AGGTTAATT
1 A-GTTAATT
78213425 TAGTAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 15 0.62
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (20 bp):
AGTTAATTAGACTTTGATTA
Found at i:78213661 original size:13 final size:14
Alignment explanation
Indices: 78213619--78213663 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
78213609 ATAATAATAT
78213619 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
78213634 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
78213647 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
78213660 TAAA
1 TAAA
78213664 ATAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:78213735 original size:21 final size:21
Alignment explanation
Indices: 78213709--78213750 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
78213699 ACAGAAAGAA
78213709 AGAAAAAGAAAACTTAGGGTT
1 AGAAAAAGAAAACTTAGGGTT
78213730 AGAAAAAGAAAACTTAGGGTT
1 AGAAAAAGAAAACTTAGGGTT
78213751 TTGGAGTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.24, T:0.19
Consensus pattern (21 bp):
AGAAAAAGAAAACTTAGGGTT
Found at i:78216809 original size:37 final size:37
Alignment explanation
Indices: 78216750--78216895 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
78216740 AGCTCAGACG
* *
78216750 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78216787 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* **
78216824 TAATCTGTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78216861 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
78216896 ATATATTTCC
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78217096 original size:48 final size:48
Alignment explanation
Indices: 78217042--78217176 Score: 252
Period size: 48 Copynumber: 2.8 Consensus size: 48
78217032 GCACATCGCC
*
78217042 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
78217090 TACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
78217138 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
78217177 TGCATGTTCA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:78217225 original size:47 final size:47
Alignment explanation
Indices: 78217146--78217339 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
78217136 CATACATATT
* * *
78217146 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
78217193 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
78217240 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
78217287 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
78217334 TCACAT
1 TCACAT
78217340 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:78217266 original size:22 final size:22
Alignment explanation
Indices: 78217239--78217310 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
78217229 GCTCACATTC
78217239 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
78217261 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
78217285 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
78217308 ATC
1 ATC
78217311 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:78231348 original size:16 final size:16
Alignment explanation
Indices: 78231327--78231361 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
78231317 AAATATGTCT
78231327 TAATTCAATGTTGTAC
1 TAATTCAATGTTGTAC
*
78231343 TAATTCAATGTTGTTC
1 TAATTCAATGTTGTAC
78231359 TAA
1 TAA
78231362 CATATTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (16 bp):
TAATTCAATGTTGTAC
Found at i:78234177 original size:21 final size:21
Alignment explanation
Indices: 78234134--78234175 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
78234124 TTTTTTAAAA
*
78234134 TAAAGATGAACACTTTTATTT
1 TAAAGATGAACAATTTTATTT
*
78234155 TAAAG-TGAACAATTTTCTTT
1 TAAAGATGAACAATTTTATTT
78234175 T
1 T
78234176 TATTTCAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.45
Consensus pattern (21 bp):
TAAAGATGAACAATTTTATTT
Found at i:78236831 original size:20 final size:18
Alignment explanation
Indices: 78236796--78236834 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
78236786 TTATAAAAAC
*
78236796 TATTTTTTATTTTATTTT
1 TATTTTTTATTATATTTT
78236814 TATTTTTTATATGATATTTT
1 TATTTTTTAT-T-ATATTTT
78236834 T
1 T
78236835 TAAAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (18 bp):
TATTTTTTATTATATTTT
Found at i:78236953 original size:28 final size:26
Alignment explanation
Indices: 78236921--78236998 Score: 104
Period size: 28 Copynumber: 2.9 Consensus size: 26
78236911 CAGTAATTGG
78236921 TTTGATCAACTAGTTTTATTAATTAA
1 TTTGATCAACTAGTTTTATTAATTAA
*
78236947 TTTTTGATCAACTAGTTTTATTAACTAA
1 --TTTGATCAACTAGTTTTATTAATTAA
*
78236975 TTTGATCAACT-GATTCTATTAATT
1 TTTGATCAACTAG-TTTTATTAATT
78236999 GTTTAACTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 1 0.02
26 20 0.43
28 25 0.54
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (26 bp):
TTTGATCAACTAGTTTTATTAATTAA
Found at i:78239224 original size:19 final size:20
Alignment explanation
Indices: 78239197--78239234 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78239187 AAATCAAAAC
78239197 AAAAATTT-ATTAATTTTAT
1 AAAAATTTAATTAATTTTAT
* *
78239216 AAAATTTTAATTATTTTTA
1 AAAAATTTAATTAATTTTA
78239235 AATTAACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAAAATTTAATTAATTTTAT
Found at i:78244785 original size:18 final size:18
Alignment explanation
Indices: 78244762--78244811 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
78244752 ATAAGTATAA
**
78244762 AATTAACCAAATTAATTG
1 AATTAACCAAATTAACCG
* *
78244780 AATTAACCGAATTACCCG
1 AATTAACCAAATTAACCG
78244798 AATTAACCAAATTA
1 AATTAACCAAATTA
78244812 TTTGTATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (18 bp):
AATTAACCAAATTAACCG
Found at i:78244846 original size:5 final size:6
Alignment explanation
Indices: 78244831--78244871 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
78244821 AATTATATGT
78244831 TTTTTA TTTTTA TTTTTA TTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTT--A TTTTTA TTTTTA TTT
78244872 ATTAAATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:78244859 original size:14 final size:13
Alignment explanation
Indices: 78244831--78244868 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
78244821 AATTATATGT
78244831 TTTTTATTTTT-A
1 TTTTTATTTTTAA
78244843 TTTTTATTTTTAGA
1 TTTTTATTTTTA-A
78244857 TTTTTATTTTTA
1 TTTTTATTTTTA
78244869 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.46
14 13 0.54
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (13 bp):
TTTTTATTTTTAA
Found at i:78248226 original size:107 final size:107
Alignment explanation
Indices: 78248036--78248247 Score: 336
Period size: 107 Copynumber: 2.0 Consensus size: 107
78248026 TGTAAAAACA
* * *
78248036 AAAAAGCAAGAAACCTTGAAACTAGACAAAAACCCCTTGAAACAATAAGTTGTTCTGCCAAAAGA
1 AAAAAGCAAAAAACCTTGAAACTAGACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAGA
* * *
78248101 GGCGAATGAGAACTGAGAAGAAGATGGAAAAAAGAGCTGAAC
66 GGCAAATGAAAACCGAGAAGAAGATGGAAAAAAGAGCTGAAC
*
78248143 AAAAAGTAAAAAACCTTGAAACT-GAACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAG
1 AAAAAGCAAAAAACCTTGAAACTAG-ACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAG
*
78248207 AGGCAAATGAAAACCGAGAAGAAGATGGCAAAAAGAGCTGA
65 AGGCAAATGAAAACCGAGAAGAAGATGGAAAAAAGAGCTGA
78248248 GTGAGGGTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
106 1 0.01
107 95 0.99
ACGTcount: A:0.50, C:0.16, G:0.20, T:0.14
Consensus pattern (107 bp):
AAAAAGCAAAAAACCTTGAAACTAGACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAGA
GGCAAATGAAAACCGAGAAGAAGATGGAAAAAAGAGCTGAAC
Found at i:78257159 original size:26 final size:26
Alignment explanation
Indices: 78257120--78257279 Score: 230
Period size: 26 Copynumber: 6.2 Consensus size: 26
78257110 TGGTACAAAT
*
78257120 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
78257146 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78257172 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78257198 TGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78257224 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78257250 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78257276 TGAT
1 TGAT
78257280 GGGCATTTCA
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 118 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78257200 original size:52 final size:52
Alignment explanation
Indices: 78257120--78257279 Score: 257
Period size: 52 Copynumber: 3.1 Consensus size: 52
78257110 TGGTACAAAT
* * *
78257120 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
* *
78257172 TGATAATAGGTTAGATAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
* *
78257224 TAATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
78257276 TGAT
1 TGAT
78257280 GGGCATTTCA
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 98 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
Found at i:78258002 original size:27 final size:27
Alignment explanation
Indices: 78257962--78258104 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
78257952 AAGAAGCGTC
*
78257962 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
78257989 CTGGTGGCTCTGCCAC-ATATATCTCTAT
1 CTGGTGGCTCTGCCACAAT-TATCT-GAT
*
78258017 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
78258045 CTGGTGGCACTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
78258072 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
78258099 CTGGTG
1 CTGGTG
78258105 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
26 9 0.09
27 63 0.64
28 5 0.05
29 20 0.20
30 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:78258046 original size:56 final size:55
Alignment explanation
Indices: 78257960--78258104 Score: 222
Period size: 56 Copynumber: 2.6 Consensus size: 55
78257950 GGAAGAAGCG
*
78257960 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTCT
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTCT
*
78258015 ATCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGT
1 -TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTCT
* *
78258071 T-CTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
78258105 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 5 0.06
54 25 0.30
55 1 0.01
56 53 0.63
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (55 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTCT
Found at i:78259239 original size:112 final size:113
Alignment explanation
Indices: 78259032--78259290 Score: 448
Period size: 112 Copynumber: 2.3 Consensus size: 113
78259022 GTGTTACAAC
*
78259032 ACTAAACCATTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTATAA
1 ACTAAACCACTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTATAA
* *
78259097 AAATATTTTTTAAAAATATATTACTAAAAAAATTACAATACGCTAAT-
66 AAATATTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATA
78259144 ACTAAACCACTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTATAA
1 ACTAAACCACTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTATAA
*
78259209 AATTATTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATA
66 AAATA-TTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATA
*
78259258 CACTAAACTACTAAACACTAACAATTTATATAA
1 -ACTAAACCACTAAACACTAACAATTTATATAA
78259291 CCAAATCAAC
Statistics
Matches: 139, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
112 68 0.49
113 40 0.29
115 31 0.22
ACGTcount: A:0.52, C:0.14, G:0.01, T:0.33
Consensus pattern (113 bp):
ACTAAACCACTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTATAA
AAATATTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATA
Found at i:78259324 original size:113 final size:111
Alignment explanation
Indices: 78259030--78259371 Score: 383
Period size: 112 Copynumber: 3.1 Consensus size: 111
78259020 GGGTGTTACA
* * * *
78259030 ACACTAAACCATTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAA-CACTAAACACTAACAATTTATATAACCAAATC-T-AACTACTAATAAAATAGCTAT
* *
78259095 AAAAATATTTTTTAAAAATATATTACTAAAAAAATTACAATACGCTAAT
63 AAAAATATTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAAT
* * *
78259144 --ACTAAACCACTAAACACTAACAATTTATATAATCTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAA-CACTAAACACTAACAATTTATATAACCAAATC-T-AACTACTAATAAAATAGCTAT
*
78259207 AAAATTATTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAAT
63 AAAAATA-TTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAAT
78259257 ACACTAAACTACTAAACACTAACAATTTATATAACCAAATC--A--ACT-ATAAAAT---TAT--
1 ACACTAAAC-ACTAAACACTAACAATTTATATAACCAAATCTAACTACTAATAAAATAGCTATAA
78259312 ---T-TTTTTTAAAAATATATTATTACTAAAAAAATCACAATACACTAAT
65 AAATATTTTTT-AAAA-ATA-TATTACTAAAAAAATCACAATACACTAAT
78259358 ACACTAAACACTAA
1 ACACTAAACACTAA
78259372 CAATTTGTAA
Statistics
Matches: 215, Mismatches: 6, Indels: 28
0.86 0.02 0.11
Matches are distributed among these distances:
98 6 0.03
99 4 0.02
100 9 0.04
101 38 0.18
105 3 0.01
108 7 0.03
109 3 0.01
111 1 0.00
112 68 0.32
113 40 0.19
114 1 0.00
115 35 0.16
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.32
Consensus pattern (111 bp):
ACACTAAACACTAAACACTAACAATTTATATAACCAAATCTAACTACTAATAAAATAGCTATAAA
AATATTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAAT
Found at i:78259950 original size:3 final size:3
Alignment explanation
Indices: 78259944--78259984 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
78259934 TACCTTTTTT
*
78259944 TTC TTC TTC TTC TTC TTC TTC TTCC TTC TTC TTC TCC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC T
78259985 CATTTCTCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:78261231 original size:28 final size:27
Alignment explanation
Indices: 78261199--78261254 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
78261189 CTTTATTAGG
78261199 AAAAAAAT-AACTTTGATGAATTTTTAAT
1 AAAAAAATGAA-TTTGA-GAATTTTTAAT
*
78261227 AAAAAATTGAATTTGAGAATTTTTAAT
1 AAAAAAATGAATTTGAGAATTTTTAAT
78261254 A
1 A
78261255 TCAAGATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 12 0.46
28 12 0.46
29 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (27 bp):
AAAAAAATGAATTTGAGAATTTTTAAT
Found at i:78262211 original size:21 final size:21
Alignment explanation
Indices: 78262187--78262293 Score: 71
Period size: 21 Copynumber: 5.1 Consensus size: 21
78262177 TTATTATTAA
78262187 ATATAATTTAACAATAATAAT
1 ATATAATTTAACAATAATAAT
78262208 ATATAATTT---AATAAT-AT
1 ATATAATTTAACAATAATAAT
* * * *
78262225 TTTTAATATAACAATTAATAAA
1 ATATAATTTAACAA-TAATAAT
* *
78262247 ATATGAA-TTAATAAAAATAAT
1 ATAT-AATTTAACAATAATAAT
* *
78262268 ATATAATATTATAAAAAAATAAT
1 ATATAAT-TTA-ACAATAATAAT
78262291 ATA
1 ATA
78262294 CAACCTACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
17 8 0.12
18 6 0.09
20 4 0.06
21 22 0.33
22 11 0.17
23 15 0.23
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (21 bp):
ATATAATTTAACAATAATAAT
Found at i:78262226 original size:58 final size:61
Alignment explanation
Indices: 78262116--78262232 Score: 159
Period size: 61 Copynumber: 2.0 Consensus size: 61
78262106 TTTAATAGGA
* **
78262116 TTATTATTAAATATAATTTAATAAAAACAATAATACTTAATTTAATCCTA-TTTTAATAAAT
1 TTATTATTAAATATAATTTAACAAAAACAATAATAC-TAATTTAATAATATTTTTAATAAAT
* *
78262177 TTATTATTAAATATAATTTAACAATAATAAT-ATA-TAATTTAATAATATTTTTAATA
1 TTATTATTAAATATAATTTAACAAAAACAATAATACTAATTTAATAATATTTTTAATA
78262233 TAACAATTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
58 11 0.22
59 8 0.16
60 3 0.06
61 28 0.56
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (61 bp):
TTATTATTAAATATAATTTAACAAAAACAATAATACTAATTTAATAATATTTTTAATAAAT
Found at i:78263160 original size:13 final size:13
Alignment explanation
Indices: 78263142--78263168 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78263132 ACTTAAGCAT
78263142 ATATAATATAATA
1 ATATAATATAATA
78263155 ATATAATATAATA
1 ATATAATATAATA
78263168 A
1 A
78263169 AGCATAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:78278239 original size:39 final size:39
Alignment explanation
Indices: 78278189--78278271 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
78278179 TATATTCTGA
78278189 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
1 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
*
78278228 ATTTTAGTTATATAAAAATTTAAAAATTTGTATGCAAGC
1 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
78278267 ATTTT
1 ATTTT
78278272 TTTATGAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.43
Consensus pattern (39 bp):
ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
Found at i:78283025 original size:24 final size:26
Alignment explanation
Indices: 78282996--78283045 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
78282986 TCTTGTTTTA
* *
78282996 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTAAAAT
78283020 ATATTTGATTTATTATATTTTAAAAT
1 ATATTTGATTTATTATATTTTAAAAT
78283046 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTAAAAT
Found at i:78283098 original size:10 final size:10
Alignment explanation
Indices: 78283083--78283116 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
78283073 AATTAATATG
78283083 GGCCGGGTCA
1 GGCCGGGTCA
78283093 GGCCGGGTCA
1 GGCCGGGTCA
78283103 GGCCGGGTCA
1 GGCCGGGTCA
78283113 GGCC
1 GGCC
78283117 CGAGCCTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.09, C:0.32, G:0.50, T:0.09
Consensus pattern (10 bp):
GGCCGGGTCA
Found at i:78288746 original size:15 final size:15
Alignment explanation
Indices: 78288726--78288762 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
78288716 TATGTTGCTT
78288726 TGTTTTGATTAATGA
1 TGTTTTGATTAATGA
78288741 TGTTTTGATTAATGA
1 TGTTTTGATTAATGA
*
78288756 TATTTTG
1 TGTTTTG
78288763 GCATAAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (15 bp):
TGTTTTGATTAATGA
Found at i:78290791 original size:136 final size:136
Alignment explanation
Indices: 78290547--78290800 Score: 490
Period size: 136 Copynumber: 1.9 Consensus size: 136
78290537 GGTAAGGGAG
*
78290547 TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAATAGTGATTCGAGATCACTAAATCCAC
1 TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
78290612 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAAATATTTTTGAAT
66 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAAATATTTTTGAAT
78290677 TAGAGA
131 TAGAGA
*
78290683 TCTCTGATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
1 TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
78290748 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAA
66 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAA
78290801 GAATTTATTA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 116 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (136 bp):
TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAAATATTTTTGAAT
TAGAGA
Found at i:78293470 original size:27 final size:27
Alignment explanation
Indices: 78293422--78293580 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
78293412 GCGAGGCTGC
* *
78293422 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
78293449 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
78293475 CAGATATATGTGGCAGAGTCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
78293502 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
78293529 CAGATATATGTGGCAGAGCCACCA-ATT
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
78293556 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
78293581 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:78293581 original size:54 final size:55
Alignment explanation
Indices: 78293440--78293583 Score: 231
Period size: 54 Copynumber: 2.7 Consensus size: 55
78293430 GTGACGAAGT
* * * *
78293440 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGT
1 CACCAGATTCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
78293494 CACCAGA-TCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATTCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
78293548 CACCA-ATTCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATTCAGATAATTGTGGCATAGCCACCAGGAC
78293584 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (55 bp):
CACCAGATTCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:78295214 original size:26 final size:26
Alignment explanation
Indices: 78295178--78295285 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
78295168 TGAAATGCCC
* *
78295178 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAACCCATT
78295204 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
78295230 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
78295256 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
78295282 ATCA
1 ATCA
78295286 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:78299945 original size:8 final size:8
Alignment explanation
Indices: 78299934--78299971 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
78299924 ATTAGATAAA
78299934 TATTATTT
1 TATTATTT
*
78299942 TATTA--A
1 TATTATTT
78299948 TATTATTT
1 TATTATTT
78299956 TATTATTT
1 TATTATTT
78299964 TATTATTT
1 TATTATTT
78299972 ATTTAGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
6 5 0.19
8 21 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TATTATTT
Found at i:78299951 original size:14 final size:14
Alignment explanation
Indices: 78299932--78299960 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
78299922 TAATTAGATA
78299932 AATATTATTTTATT
1 AATATTATTTTATT
78299946 AATATTATTTTATT
1 AATATTATTTTATT
78299960 A
1 A
78299961 TTTTATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
AATATTATTTTATT
Found at i:78299962 original size:22 final size:20
Alignment explanation
Indices: 78299934--78299975 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
78299924 ATTAGATAAA
78299934 TATTATTTTATTAATATTATTT
1 TATTATTTTATT-AT-TTATTT
78299956 TATTATTTTATTATTTATTT
1 TATTATTTTATTATTTATTT
78299976 AGTATATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTTTATTATTTATTT
Found at i:78308250 original size:4 final size:4
Alignment explanation
Indices: 78308243--78308273 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
78308233 AACTTGCTCG
*
78308243 TTTA TTTA TTTA TTTA TTCA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
78308274 CTAAAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:78308584 original size:24 final size:23
Alignment explanation
Indices: 78308539--78308584 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
78308529 CTACTTACTC
*
78308539 TAAACTTGCTTTATATATTATTT
1 TAAACTTGCTTTATATACTATTT
* *
78308562 TAAACTTGTTTTTATGTACTATT
1 TAAACTTG-CTTTATATACTATT
78308585 GTTTTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.57
Consensus pattern (23 bp):
TAAACTTGCTTTATATACTATTT
Found at i:78310803 original size:15 final size:15
Alignment explanation
Indices: 78310783--78310814 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
78310773 GTGAATGATG
78310783 TGTGGATGTCTTGGT
1 TGTGGATGTCTTGGT
*
78310798 TGTGGATGTTTTGGT
1 TGTGGATGTCTTGGT
78310813 TG
1 TG
78310815 GCTAAGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.03, G:0.41, T:0.50
Consensus pattern (15 bp):
TGTGGATGTCTTGGT
Found at i:78313840 original size:35 final size:35
Alignment explanation
Indices: 78313810--78314008 Score: 161
Period size: 35 Copynumber: 5.7 Consensus size: 35
78313800 GATCCATGGA
78313810 AAAG-TGTGAAATGTAGGTATGGTATCATCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** *
78313844 CGAGTTGTGAATTGTAGGTATGGTATCATCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** * * *
78313879 CGAGTTGAGAAATATAGGTATGGTATTATCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** ** * *
78313914 TGAGTTAAGAAATGTAGGTATGGCAT-TTCCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCAT-CCATAC
** * **
78313949 CGAGTTGTGAAACGTAGGTATGGTATTTTCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** * *
78313984 CGAG-TATAAAATGTAGGTATGGTAT
1 AAAGTTGTGAAATGTAGGTATGGTAT
78314009 TTCAATGAGG
Statistics
Matches: 142, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
34 21 0.15
35 119 0.84
36 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (35 bp):
AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
Found at i:78313898 original size:70 final size:70
Alignment explanation
Indices: 78313817--78314008 Score: 253
Period size: 70 Copynumber: 2.8 Consensus size: 70
78313807 GGAAAAGTGT
* * *
78313817 GAAATGTAGGTATGGTATCATCCATACCGAGTTGTGAATTGTAGGTATGGTATCAT-CCATACCG
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTATGAAATGTAGGTATGGTAT-ATCCCATACCG
78313881 AGTTGA
65 AGTTGA
* * * * *
78313887 GAAATATAGGTATGGTATTATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCATACCGA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTATGAAATGTAGGTATGGTATATCCCATACCGA
*
78313952 GTTGT
66 GTTGA
* * *
78313957 GAAACGTAGGTATGGTATTTTCCATACCGAG-TATAAAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTATGAAATGTAGGTATGGTAT
78314009 TTCAATGAGG
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
69 19 0.18
70 86 0.82
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.32
Consensus pattern (70 bp):
GAAATGTAGGTATGGTATTATCCATACCGAGTTATGAAATGTAGGTATGGTATATCCCATACCGA
GTTGA
Found at i:78313983 original size:105 final size:104
Alignment explanation
Indices: 78313817--78314009 Score: 282
Period size: 105 Copynumber: 1.8 Consensus size: 104
78313807 GGAAAAGTGT
* **
78313817 GAAATGTAGGTATGGTATCATCCATACCGAGTTGTGAATTGTAGGTATGGTATCATCCATACCGA
1 GAAATGTAGGTATGGCATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGA
78313882 GT-TGAGAAATATAGGTATGGTATTATCCATACTGAGTTAA
66 GTAT-A-AAATATAGGTATGGTATTATCCATACTGAGTTAA
* **
78313922 GAAATGTAGGTATGGCAT-TTCCCATACCGAGTTGTGAAACGTAGGTATGGTATTTTCCATACCG
1 GAAATGTAGGTATGGCATCAT-CCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCG
*
78313986 AGTATAAAATGTAGGTATGGTATT
65 AGTATAAAATATAGGTATGGTATT
78314010 TCAATGAGGA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
104 18 0.23
105 60 0.76
106 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (104 bp):
GAAATGTAGGTATGGCATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGA
GTATAAAATATAGGTATGGTATTATCCATACTGAGTTAA
Found at i:78316805 original size:15 final size:16
Alignment explanation
Indices: 78316785--78316814 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
78316775 AAATCTCATA
78316785 CAAAATCAAT-AATAC
1 CAAAATCAATCAATAC
78316800 CAAAATCAATCAATA
1 CAAAATCAATCAATA
78316815 AATAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (16 bp):
CAAAATCAATCAATAC
Found at i:78320980 original size:19 final size:16
Alignment explanation
Indices: 78320955--78321002 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
78320945 ATATATATAA
78320955 AAAAAATATAATAAAAT
1 AAAAAATA-AATAAAAT
78320972 AATAGAAATAAA-AAAAT
1 AA-A-AAATAAATAAAAT
78320989 AAAAAATAAATAAA
1 AAAAAATAAATAAA
78321003 TTTTTTACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 7 0.25
16 4 0.14
17 9 0.32
18 3 0.11
19 5 0.18
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAAAATAAATAAAAT
Found at i:78321759 original size:28 final size:28
Alignment explanation
Indices: 78321710--78321763 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
78321700 CGTACATGTA
* *
78321710 TATACAGTATTATCTTTTATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
* *
78321738 TATATAGTATGATTTTTAATTACTTT
1 TATACAGTATGATCTTTAATTACTTT
78321764 TTTTTGTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (28 bp):
TATACAGTATGATCTTTAATTACTTTAT
Found at i:78325008 original size:27 final size:27
Alignment explanation
Indices: 78324978--78325031 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78324968 TCTATGTACA
* *
78324978 TATATGTATATTATTTGTTCTAAAATT
1 TATATATATATCATTTGTTCTAAAATT
* *
78325005 TATATATATATCATTTTTTCTTAAATT
1 TATATATATATCATTTGTTCTAAAATT
78325032 ATTTTATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
TATATATATATCATTTGTTCTAAAATT
Found at i:78327399 original size:90 final size:89
Alignment explanation
Indices: 78327278--78327487 Score: 257
Period size: 90 Copynumber: 2.3 Consensus size: 89
78327268 TTAAGCCTTT
* * * * *
78327278 TTTTTTTTGAAAAGGGTTTGAGAGTCATTTTGATGCATTTTGAAAGTTCAAGGACTCAATTGAGT
1 TTTTTTTT-AAAAAGGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGGACCCAAATGAGT
* *
78327343 GCAAAAAAAACTAG-GGGCTTAATTGA-
65 G-AAAAAAAA-AAGAAGGCTTAATT-AC
*
78327369 TTTTTTTTAAAAAGGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTG
1 TTTTTTTTAAAAAGGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGGACCCAAATGAGTG
78327434 AAAAAAAAAAGCAAGGCTTAATTAC
66 AAAAAAAAAAG-AAGGCTTAATTAC
* *
78327459 TTTTTTTGAAAAA-GTTTGAAGG-CTTTTTG
1 TTTTTTTTAAAAAGGTTTGAGGGTCTTTTTG
78327488 CACCGTTAAG
Statistics
Matches: 106, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
88 9 0.08
89 17 0.16
90 72 0.68
91 8 0.08
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (89 bp):
TTTTTTTTAAAAAGGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGGACCCAAATGAGTG
AAAAAAAAAAGAAGGCTTAATTAC
Found at i:78327648 original size:40 final size:39
Alignment explanation
Indices: 78327604--78327693 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 39
78327594 TATATATATA
78327604 TTTTGTTTATTACAATTTT-ATA-TATAAATAACTTCACATT
1 TTTTGTTTATTAC-ATTTTAATATTATAAATAAC-T-ACATT
* *
78327644 TTTTGTTGT-TTACATTTTAATATTATATATAACTATATT
1 TTTTGTT-TATTACATTTTAATATTATAAATAACTACATT
78327683 TTTTGTGTTAT
1 TTTTGT-TTAT
78327694 AAATTATGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
39 16 0.37
40 17 0.40
41 10 0.23
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.58
Consensus pattern (39 bp):
TTTTGTTTATTACATTTTAATATTATAAATAACTACATT
Found at i:78327684 original size:39 final size:40
Alignment explanation
Indices: 78327580--78327693 Score: 105
Period size: 39 Copynumber: 2.9 Consensus size: 40
78327570 ATTATATTAT
* *
78327580 TTTTAA-ATTGTATATATA-TATATATTTTGTTTATTACAA
1 TTTTAATATTATATATA-ACTATATTTTTTGTTTATTACAA
* *
78327619 TTTT-ATA-TATAAATAACTTCACATTTTTTGTTGT-TTAC-A
1 TTTTAATATTATATATAAC-T-ATATTTTTTGTT-TATTACAA
78327658 TTTTAATATTATATATAACTATATTTTTTGTGTTAT
1 TTTTAATATTATATATAACTATATTTTTTGT-TTAT
78327694 AAATTATGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 17
0.72 0.07 0.20
Matches are distributed among these distances:
37 1 0.02
38 7 0.12
39 22 0.37
40 20 0.33
41 10 0.17
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (40 bp):
TTTTAATATTATATATAACTATATTTTTTGTTTATTACAA
Found at i:78334027 original size:12 final size:12
Alignment explanation
Indices: 78334010--78334034 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78334000 TACTGCTCCT
78334010 TTTAATTAAAAA
1 TTTAATTAAAAA
78334022 TTTAATTAAAAA
1 TTTAATTAAAAA
78334034 T
1 T
78334035 AAGTGTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TTTAATTAAAAA
Found at i:78336990 original size:31 final size:31
Alignment explanation
Indices: 78336932--78336990 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
78336922 TGTGCAATTA
* * *
78336932 TATAAATCAAACTTTGATTTCGGTTCAAATG
1 TATAAATAAAACTTTAATTTCGATTCAAATG
* *
78336963 TATAAATAAAATTTTAATTTTGATTCAA
1 TATAAATAAAACTTTAATTTCGATTCAA
78336991 TTATATATGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Consensus pattern (31 bp):
TATAAATAAAACTTTAATTTCGATTCAAATG
Found at i:78340984 original size:44 final size:44
Alignment explanation
Indices: 78340931--78341018 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
78340921 TTTAATAGAT
78340931 AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
1 AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
*
78340975 AACGACTAATTTATTTTTTGATCTAATGTACATGGATTAATTTA
1 AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
78341019 TTCATTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.45
Consensus pattern (44 bp):
AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
Found at i:78346255 original size:3 final size:3
Alignment explanation
Indices: 78346242--78346277 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
78346232 AATTTGATTA
78346242 ATT AGTT ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
78346278 TTAGTTTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:78366108 original size:9 final size:10
Alignment explanation
Indices: 78366091--78366129 Score: 55
Period size: 9 Copynumber: 4.0 Consensus size: 10
78366081 ATAAAATGTT
78366091 ATATTAATAA
1 ATATTAATAA
78366101 AT-TTAATAAA
1 ATATTAAT-AA
78366111 ATATTAAT-A
1 ATATTAATAA
78366120 ATATTAATAA
1 ATATTAATAA
78366130 TTAGACCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 14 0.54
10 7 0.27
11 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATTAATAA
Found at i:78366116 original size:20 final size:20
Alignment explanation
Indices: 78366091--78366129 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
78366081 ATAAAATGTT
78366091 ATATTAATAA-ATTTAATAAA
1 ATATTAATAATA-TTAATAAA
78366111 ATATTAATAATATTAATAA
1 ATATTAATAATATTAATAA
78366130 TTAGACCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATTAATAATATTAATAAA
Found at i:78370434 original size:43 final size:43
Alignment explanation
Indices: 78370368--78370495 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
78370358 CTAGTACAAC
* * * *
78370368 GCCAATGTCCCAGACGTGATCTTACACGTAATCACATATTGAT
1 GCCACTGTCCCAGACGTGGTCTTACACGTAATCACAAATCGAT
*
78370411 GCCACTGTCCCAGACAG-GGTCTTACACGTAAACTACAAATCGAT
1 GCCACTGTCCCAGAC-GTGGTCTTACACGTAATC-ACAAATCGAT
*
78370455 GCCAAC-GTCCCAGACGTGGTCTTACACGAAATCACAAATCG
1 GCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACAAATCG
78370496 GAATCCTATG
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
43 37 0.50
44 35 0.47
45 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
GCCACTGTCCCAGACGTGGTCTTACACGTAATCACAAATCGAT
Found at i:78370830 original size:12 final size:12
Alignment explanation
Indices: 78370813--78370837 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78370803 AAATTAAACT
78370813 TATTTAATCAAA
1 TATTTAATCAAA
78370825 TATTTAATCAAA
1 TATTTAATCAAA
78370837 T
1 T
78370838 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATTTAATCAAA
Found at i:78372085 original size:37 final size:37
Alignment explanation
Indices: 78372044--78372155 Score: 119
Period size: 37 Copynumber: 3.0 Consensus size: 37
78372034 ATTTGAAAAA
*
78372044 TAATATTATTTTAATAGATTTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGATTTAATATT-AATTTAATAT
78372081 TAATACTTATCTTAATAG-TATT-ATATTAATTTAATAT
1 TAATA-TTATCTTAATAGAT-TTAATATTAATTTAATAT
78372118 TAGAGTTATTATCTTAAT--ATTTAAT-TTAATTTAATAT
1 TA-A--TATTATCTTAATAGATTTAATATTAATTTAATAT
78372155 T
1 T
78372156 TGTCTTGTTG
Statistics
Matches: 66, Mismatches: 1, Indels: 16
0.80 0.01 0.19
Matches are distributed among these distances:
36 8 0.12
37 29 0.44
38 17 0.26
39 10 0.15
40 2 0.03
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.54
Consensus pattern (37 bp):
TAATATTATCTTAATAGATTTAATATTAATTTAATAT
Found at i:78372225 original size:22 final size:23
Alignment explanation
Indices: 78372184--78372246 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
78372174 TCTAAGATTT
78372184 AATATTAAATTTAATCTAATATA
1 AATATTAAATTTAATCTAATATA
* *
78372207 AATATTATA-TTAATTTAATATTA
1 AATATTAAATTTAATCTAATA-TA
*
78372230 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
78372247 AATAATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
22 10 0.31
23 12 0.38
24 1 0.03
25 4 0.12
26 5 0.16
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (23 bp):
AATATTAAATTTAATCTAATATA
Found at i:78375081 original size:4 final size:4
Alignment explanation
Indices: 78375074--78375107 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
78375064 TTTTAATTCT
* *
78375074 TTTA TTTA TTTA TTCA TTTA TTTA CTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
78375108 ATTCCTTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:78375093 original size:16 final size:16
Alignment explanation
Indices: 78375058--78375103 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
78375048 CTAAGGCCTC
*
78375058 TATTTATTTTAATTCTTT
1 TATTTA-TTT-ATTCATT
78375076 TATTTATTTATTCATT
1 TATTTATTTATTCATT
*
78375092 TATTTACTTATT
1 TATTTATTTATT
78375104 TATTATTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 17 0.65
17 3 0.12
18 6 0.23
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTATTTATTCATT
Found at i:78376633 original size:16 final size:16
Alignment explanation
Indices: 78376612--78376643 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78376602 TATTTTGTTA
78376612 ATTTTTATTATTATTT
1 ATTTTTATTATTATTT
*
78376628 ATTTTTATTTTTATTT
1 ATTTTTATTATTATTT
78376644 GGTTCTTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
ATTTTTATTATTATTT
Found at i:78377721 original size:14 final size:14
Alignment explanation
Indices: 78377704--78377738 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
78377694 AATATGATTG
78377704 ACTGTTTCTGAATA
1 ACTGTTTCTGAATA
* *
78377718 ACTGCTTCTGAATG
1 ACTGTTTCTGAATA
78377732 ACTGTTT
1 ACTGTTT
78377739 GAGATTGTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (14 bp):
ACTGTTTCTGAATA
Found at i:78379849 original size:15 final size:16
Alignment explanation
Indices: 78379820--78379853 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
78379810 ATATATATGT
78379820 ATATAGATATATTAGC
1 ATATAGATATATTAGC
78379836 ATATAGAT-TATTAGC
1 ATATAGATATATTAGC
78379851 ATA
1 ATA
78379854 CGTATAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (16 bp):
ATATAGATATATTAGC
Found at i:78382576 original size:10 final size:10
Alignment explanation
Indices: 78382557--78382615 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
78382547 TTAAATTCTA
78382557 AAAGATAAAT
1 AAAGATAAAT
78382567 ATAA-ATAAAT
1 A-AAGATAAAT
78382577 AAAGATAAAT
1 AAAGATAAAT
78382587 AAAGATAAAT
1 AAAGATAAAT
* *
78382597 AAGGAGAAAT
1 AAAGATAAAT
*
78382607 AAATATAAA
1 AAAGATAAA
78382616 AGCTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.90
11 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:78388507 original size:126 final size:126
Alignment explanation
Indices: 78388323--78388576 Score: 368
Period size: 126 Copynumber: 2.0 Consensus size: 126
78388313 AAGCTTCTTC
* * * *
78388323 TTGCTAATTGGTTTTGTCACAGACTTATCATTTCCTCCTTCAACCACATCCAAGTTAGAAGGGCT
1 TTGCTAACTGATTTTGTCACAGACTTATCATTTCCACCTTCAACCACATCCAACTTAGAAGGGCT
* *
78388388 GT-CGACATTGTCCTTCCCCAGCTTTCCATCAAGTGAAGGAACCTGAACATCTCGCTGCTTA
66 ATGCGA-ATTATCCTTCCCCAGCTTTCCATCAAGTGAAGGAACCTGAACATCTCGCTGCTTA
* * *
78388449 TTGCTAACTGATTTTGTCACTGA-TTCATCATTTCCACCTTCAAGCACGTCCAACTTAGAAGGGC
1 TTGCTAACTGATTTTGTCACAGACTT-ATCATTTCCACCTTCAACCACATCCAACTTAGAAGGGC
* * *
78388513 TATGGGAATTATCCTTCCCCAGCTTTCTATCAAGTGAAGGAACCTGAACATCTTGCTGCTTA
65 TATGCGAATTATCCTTCCCCAGCTTTCCATCAAGTGAAGGAACCTGAACATCTCGCTGCTTA
78388575 TT
1 TT
78388577 CTGCAGCTCA
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
125 2 0.02
126 110 0.96
127 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (126 bp):
TTGCTAACTGATTTTGTCACAGACTTATCATTTCCACCTTCAACCACATCCAACTTAGAAGGGCT
ATGCGAATTATCCTTCCCCAGCTTTCCATCAAGTGAAGGAACCTGAACATCTCGCTGCTTA
Found at i:78393324 original size:29 final size:31
Alignment explanation
Indices: 78393280--78393348 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 31
78393270 TTTTAACTTA
*
78393280 ATTTAAAATATTAATTCAAAA-AAAT-TTTG
1 ATTTAAAATATCAATTCAAAATAAATATTTG
* * *
78393309 ATTTAAAATCTCAATTTAAAATTAATATTTG
1 ATTTAAAATATCAATTCAAAATAAATATTTG
78393340 ATTTGAAAA
1 ATTT-AAAA
78393349 GCTAATTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 18 0.55
30 3 0.09
31 8 0.24
32 4 0.12
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (31 bp):
ATTTAAAATATCAATTCAAAATAAATATTTG
Found at i:78396900 original size:28 final size:27
Alignment explanation
Indices: 78396836--78396900 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
78396826 ACACAAATTG
* * *
78396836 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
78396863 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
78396892 AAAATAAAA
1 AAAATAAAA
78396901 AATATATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:78397532 original size:3 final size:3
Alignment explanation
Indices: 78397487--78397513 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
78397477 CTTATGTTTA
78397487 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
78397514 AAAACATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:78397822 original size:20 final size:20
Alignment explanation
Indices: 78397797--78397838 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
78397787 AATAAGGGTA
78397797 ATTACATGTTATTATTTACT
1 ATTACATGTTATTATTTACT
78397817 ATTACATGTTATTATTTACT
1 ATTACATGTTATTATTTACT
78397837 AT
1 AT
78397839 CATGATAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.55
Consensus pattern (20 bp):
ATTACATGTTATTATTTACT
Found at i:78402117 original size:29 final size:29
Alignment explanation
Indices: 78402080--78402182 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
78402070 GGTTGAAGAA
*
78402080 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCAATTACTGAT
* ** **
78402109 CTCGCACACATAGTG-CTCGGTTAAAAGAGT
1 CTCGCACACACAGTGCCTCAATT-ACTGA-T
78402139 -TCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCAATTACTGAT
*
78402167 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
78402183 TTGGTTAAAG
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
28 6 0.10
29 46 0.79
30 6 0.10
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAATTACTGAT
Found at i:78402167 original size:58 final size:58
Alignment explanation
Indices: 78402049--78402214 Score: 262
Period size: 58 Copynumber: 2.9 Consensus size: 58
78402039 CCCACTGACC
* * *
78402049 GATCTCGCACACATAGTGCTCGGTT-GAAGAACTCGTACACACAGTGCCTCAATTACT
1 GATCTCGCACACATAGTGCTCGGTTAAAAGAATTCGCACACACAGTGCCTCAATTACT
*
78402106 GATCTCGCACACATAGTGCTCGGTTAAAAGAGTTCGCACACACAGTGCCTCAATTACT
1 GATCTCGCACACATAGTGCTCGGTTAAAAGAATTCGCACACACAGTGCCTCAATTACT
* * *
78402164 GATCTCGCACACATAGTGCTTGGTTAAAGGAATTTGCACACACAGTGCCTC
1 GATCTCGCACACATAGTGCTCGGTTAAAAGAATTCGCACACACAGTGCCTC
78402215 TAATCATTCG
Statistics
Matches: 100, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 25 0.25
58 75 0.75
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (58 bp):
GATCTCGCACACATAGTGCTCGGTTAAAAGAATTCGCACACACAGTGCCTCAATTACT
Found at i:78402432 original size:43 final size:43
Alignment explanation
Indices: 78402368--78402501 Score: 189
Period size: 43 Copynumber: 3.1 Consensus size: 43
78402358 CCTTGCTCGA
**
78402368 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
* *
78402411 ATCACCGGCACGAAGCTTGCTAGGCACGAA-AGCCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGA-CCCGAATACAC
* * *
78402454 ATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
78402497 ATCAC
1 ATCAC
78402502 TGAGTTTCAT
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 79 0.99
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
Found at i:78406163 original size:27 final size:27
Alignment explanation
Indices: 78406133--78406214 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
78406123 CAACATCATA
78406133 GGTAATCCGTTGGGACAATAAACACAG
1 GGTAATCCGTTGGGACAATAAACACAG
* * * *
78406160 GGTAGTCCATCGGGAAAATAAACACAG
1 GGTAATCCGTTGGGACAATAAACACAG
* * *
78406187 GGTAA-CCTGTTGGGGCATTAAATACAG
1 GGTAATCC-GTTGGGACAATAAACACAG
78406214 G
1 G
78406215 TTAGACGGTG
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
26 2 0.05
27 41 0.95
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (27 bp):
GGTAATCCGTTGGGACAATAAACACAG
Found at i:78407928 original size:21 final size:21
Alignment explanation
Indices: 78407903--78407945 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
78407893 AAGAACTATT
78407903 ATCATGGCCCAAAGCCAAATC
1 ATCATGGCCCAAAGCCAAATC
**
78407924 ATCATGGCCTGAAGCCAAATC
1 ATCATGGCCCAAAGCCAAATC
78407945 A
1 A
78407946 GTAAAATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.16
Consensus pattern (21 bp):
ATCATGGCCCAAAGCCAAATC
Found at i:78409745 original size:16 final size:16
Alignment explanation
Indices: 78409724--78409754 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78409714 TTCACTATTA
*
78409724 TGTCTTTTATATTTTT
1 TGTCTTTCATATTTTT
78409740 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
78409755 GTATGCATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTCTTTCATATTTTT
Found at i:78411359 original size:17 final size:18
Alignment explanation
Indices: 78411320--78411395 Score: 68
Period size: 19 Copynumber: 4.2 Consensus size: 18
78411310 ATTCCAAAAA
*
78411320 TAATA-TTATTTTAATAGTT
1 TAATATTTAATTTAATA--T
78411339 TAATATTTAATTTAAT-T
1 TAATATTTAATTTAATAT
*
78411356 TAATATTT-ATCTTAATAG
1 TAATATTTAAT-TTAATAT
*
78411374 TAGTATATTAATTTAATAT
1 TAATAT-TTAATTTAATAT
78411393 TAA
1 TAA
78411396 ATTGATTAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
16 2 0.04
17 14 0.30
18 5 0.11
19 15 0.32
20 11 0.23
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (18 bp):
TAATATTTAATTTAATAT
Found at i:78411373 original size:37 final size:36
Alignment explanation
Indices: 78411320--78411395 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
78411310 ATTCCAAAAA
*
78411320 TAATATTATTTTAATAGTTTAATAT-TTAATTTAAT-T
1 TAATATTATCTTAATAG--TAATATATTAATTTAATAT
*
78411356 TAATATTTATCTTAATAGTAGTATATTAATTTAATAT
1 TAATA-TTATCTTAATAGTAATATATTAATTTAATAT
78411393 TAA
1 TAA
78411396 ATTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 5 0.14
36 15 0.43
37 15 0.43
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTAATATATTAATTTAATAT
Found at i:78419772 original size:5 final size:6
Alignment explanation
Indices: 78419759--78419805 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
78419749 ATAATTTAAT
*
78419759 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
78419806 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:78419806 original size:20 final size:20
Alignment explanation
Indices: 78419759--78419799 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78419749 ATAATTTAAT
**
78419759 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
*
78419779 AACTAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
78419799 A
1 A
78419800 TAAAAAACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:78419854 original size:9 final size:9
Alignment explanation
Indices: 78419825--78419874 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
78419815 TTTATACAAA
78419825 TAATTCGGT
1 TAATTCGGT
*
78419834 TAATTTGAG-
1 TAATTCG-GT
*
78419843 TAATTCGGG
1 TAATTCGGT
78419852 TAATTCGGT
1 TAATTCGGT
78419861 TAATTCGGT
1 TAATTCGGT
78419870 TAATT
1 TAATT
78419875 TTATACTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 1 0.03
9 34 0.94
10 1 0.03
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:78422951 original size:19 final size:19
Alignment explanation
Indices: 78422927--78422963 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
78422917 TGTAGCTCAC
78422927 ATGGCCCAGCCCATGTGGA
1 ATGGCCCAGCCCATGTGGA
*
78422946 ATGGCCTAGCCCATGTGG
1 ATGGCCCAGCCCATGTGG
78422964 CTGTTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (19 bp):
ATGGCCCAGCCCATGTGGA
Found at i:78423360 original size:12 final size:12
Alignment explanation
Indices: 78423343--78423367 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78423333 TCGTACGCTA
78423343 AGATTTGTGTTG
1 AGATTTGTGTTG
78423355 AGATTTGTGTTG
1 AGATTTGTGTTG
78423367 A
1 A
78423368 TACCGTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (12 bp):
AGATTTGTGTTG
Found at i:78427904 original size:21 final size:21
Alignment explanation
Indices: 78427878--78427918 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
78427868 ATCTGATCAA
*
78427878 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
78427899 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
78427919 TCGCTTGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:78434213 original size:12 final size:12
Alignment explanation
Indices: 78434194--78434231 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
78434184 CTGAATCATC
78434194 TATGCCATATCT
1 TATGCCATATCT
*
78434206 TTTGCCATATCT
1 TATGCCATATCT
78434218 TATGCCATATCT
1 TATGCCATATCT
78434230 TA
1 TA
78434232 ATAAGGGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.45
Consensus pattern (12 bp):
TATGCCATATCT
Found at i:78436494 original size:6 final size:6
Alignment explanation
Indices: 78436485--78436530 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
78436475 AGACAGAAGA
78436485 GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAG
1 GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAG
78436531 GAGATCTGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.52, T:0.15
Consensus pattern (6 bp):
GGAGAT
Found at i:78441034 original size:24 final size:24
Alignment explanation
Indices: 78440997--78441043 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
78440987 TATATATACC
78440997 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
78441021 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
78441044 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:78441898 original size:18 final size:19
Alignment explanation
Indices: 78441852--78441899 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
78441842 TAAGTATACA
* *
78441852 TATATTATTATATACATATG
1 TATATTATT-TGTACACATG
78441872 TATATTATTTGTACACATG
1 TATATTATTTGTACACATG
78441891 TA-ATTATTT
1 TATATTATTT
78441900 TTACCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (19 bp):
TATATTATTTGTACACATG
Found at i:78441993 original size:18 final size:19
Alignment explanation
Indices: 78441956--78441993 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
78441946 TTACTTTTTC
*
78441956 TTTAATCTATAATTCAATT
1 TTTAATCTATAATGCAATT
*
78441975 TTTACTCTAT-ATGCAATT
1 TTTAATCTATAATGCAATT
78441993 T
1 T
78441994 AATCCTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.32, C:0.13, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTAATCTATAATGCAATT
Found at i:78442048 original size:20 final size:21
Alignment explanation
Indices: 78442003--78442051 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
78441993 TAATCCTTTC
* * *
78442003 ACCTAATTACTCTTAATTCAA
1 ACCTAATTACACTTAACTAAA
78442024 A-CTAATT-CACTTAACTAAA
1 ACCTAATTACACTTAACTAAA
78442043 ACCTAATTA
1 ACCTAATTA
78442052 ACCACACAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 10 0.43
20 12 0.52
21 1 0.04
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (21 bp):
ACCTAATTACACTTAACTAAA
Found at i:78451867 original size:37 final size:35
Alignment explanation
Indices: 78451810--78451880 Score: 90
Period size: 37 Copynumber: 2.0 Consensus size: 35
78451800 TCACTTCAGT
*
78451810 ATTAAATTAATAAAATACTATTAAGATAAGTATTAA
1 ATTAAATTAATAAAATACTATTAAAATAA-TATTAA
*
78451846 ATTAAATTTAATATTAA-ACTATTAAAATAATATTA
1 ATTAAA-TTAATA-AAATACTATTAAAATAATATTA
78451881 TTTTGGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 11 0.35
37 18 0.58
38 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (35 bp):
ATTAAATTAATAAAATACTATTAAAATAATATTAA
Found at i:78453530 original size:28 final size:27
Alignment explanation
Indices: 78453437--78453552 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
78453427 AACCAAATTG
*
78453437 TATATGAATA-ATTTTAAAGAAAATATA
1 TATAT-AATAGATTTAAAAGAAAATATA
* *
78453464 TATATAATA-AGTTTAGAAGAAAATATT
1 TATATAATAGA-TTTAAAAGAAAATATA
* *
78453491 TACATAACAGATTTGAAAAGAAAATATA
1 TATATAATAGATTT-AAAAGAAAATATA
*
78453519 TAT-TAAATAGATTTAAAAGAAACTATA
1 TATAT-AATAGATTTAAAAGAAAATATA
*
78453546 TAAATAA
1 TATATAA
78453553 AATAACATAG
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
26 5 0.07
27 45 0.62
28 23 0.32
ACGTcount: A:0.56, C:0.03, G:0.09, T:0.33
Consensus pattern (27 bp):
TATATAATAGATTTAAAAGAAAATATA
Found at i:78453556 original size:29 final size:28
Alignment explanation
Indices: 78453499--78453556 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
78453489 TTTACATAAC
* *
78453499 AGATTTGAAAAGAAAATATATATTAAAT
1 AGATTTGAAAAGAAAATATAAATAAAAT
78453527 AGATTT-AAAAGAAACTATATAAATAAAAT
1 AGATTTGAAAAGAAA--ATATAAATAAAAT
78453556 A
1 A
78453557 ACATAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 8 0.31
28 6 0.23
29 12 0.46
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (28 bp):
AGATTTGAAAAGAAAATATAAATAAAAT
Found at i:78458155 original size:24 final size:24
Alignment explanation
Indices: 78458026--78458185 Score: 126
Period size: 24 Copynumber: 6.7 Consensus size: 24
78458016 CAACCAATTT
* ** *
78458026 CGCACACATAGTGCTAAACAAATT
1 CGCACACATAGTGCCATTCAAATC
* *
78458050 CGCACACATAGTGCCATGCTACA-C
1 CGCACACATAGTGCCATTC-AAATC
* *
78458074 CGCACACATAGTGCC-TTGAAGATT
1 CGCACACATAGTGCCATTCAA-ATC
* * ** * * *
78458098 CACTCATGTATTGACATCCAAATC
1 CGCACACATAGTGCCATTCAAATC
* *
78458122 AGCACACATAGTGCCATTCAACTC
1 CGCACACATAGTGCCATTCAAATC
78458146 CGCACACATAGTGCCATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
*
78458170 CGCACACTTAGTGCCA
1 CGCACACATAGTGCCA
78458186 ATGTTGACCT
Statistics
Matches: 102, Mismatches: 30, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 94 0.92
25 5 0.05
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.22
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATC
Found at i:78465271 original size:18 final size:18
Alignment explanation
Indices: 78465249--78465293 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
78465239 TTTGTTTTTC
78465249 AAATTTTAAATAT-TAAT
1 AAATTTTAAATATATAAT
* *
78465266 ACAATTTTGATTATATAAT
1 A-AATTTTAAATATATAAT
78465285 AAATTTTAA
1 AAATTTTAA
78465294 TGAAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 17 0.74
19 5 0.22
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
AAATTTTAAATATATAAT
Found at i:78467149 original size:19 final size:19
Alignment explanation
Indices: 78467125--78467169 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
78467115 AATTTGAAAG
**
78467125 AACGATTTGACTGTCAAAA
1 AACGATTTGACCATCAAAA
*
78467144 AACGATTTGACCATCAGAA
1 AACGATTTGACCATCAAAA
78467163 AACGATT
1 AACGATT
78467170 ATACTCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (19 bp):
AACGATTTGACCATCAAAA
Found at i:78468753 original size:20 final size:20
Alignment explanation
Indices: 78468728--78468767 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
78468718 CAGTCATGGG
78468728 AGAGAATTTCTAAGCTAGTT
1 AGAGAATTTCTAAGCTAGTT
78468748 AGAGAATTTCTAAGCTAGTT
1 AGAGAATTTCTAAGCTAGTT
78468768 CTTCATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
AGAGAATTTCTAAGCTAGTT
Found at i:78469709 original size:21 final size:21
Alignment explanation
Indices: 78469685--78469752 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
78469675 TGTTTAACCT
*
78469685 TTATGGATTTCCGTTTAGCTC
1 TTATGGATTTCCGTTTAGCAC
* * * *
78469706 TTATGAGCTTT-CGTTCAACCC
1 TTATG-GATTTCCGTTTAGCAC
* *
78469727 TTATGGGTTTCTGTTTAGCAC
1 TTATGGATTTCCGTTTAGCAC
78469748 TTATG
1 TTATG
78469753 TGCTTCTATT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
20 4 0.11
21 28 0.78
22 4 0.11
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.46
Consensus pattern (21 bp):
TTATGGATTTCCGTTTAGCAC
Found at i:78469731 original size:42 final size:41
Alignment explanation
Indices: 78469609--78469757 Score: 156
Period size: 42 Copynumber: 3.6 Consensus size: 41
78469599 TTTCACGAGC
* * *
78469609 TTCTGTTTAACTCATATGAG-TTTCCGTTCAACCCTAATAGGT
1 TTCTGTTTAGCTCTTATGAGCTTT-CGTTCAACCCTTAT-GGT
* * * * *
78469651 TTCTGTTCAGCTCTTTTGAGCTTTTGTTTAACCTTTATGGAT
1 TTCTGTTTAGCTCTTATGAGCTTTCGTTCAACCCTTATGG-T
*
78469693 TTCCGTTTAGCTCTTATGAGCTTTCGTTCAACCCTTATGGGT
1 TTCTGTTTAGCTCTTATGAGCTTTCGTTCAACCCTTAT-GGT
* *
78469735 TTCTGTTTAGCACTTATGTGCTT
1 TTCTGTTTAGCTCTTATGAGCTT
78469758 CTATTTAGCC
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
41 2 0.02
42 80 0.92
43 5 0.06
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (41 bp):
TTCTGTTTAGCTCTTATGAGCTTTCGTTCAACCCTTATGGT
Found at i:78469759 original size:21 final size:21
Alignment explanation
Indices: 78469726--78469766 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
78469716 TCGTTCAACC
* *
78469726 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGCTTCTATTTAGCA
*
78469747 CTTATGTGCTTCTATTTAGC
1 CTTATGGGCTTCTATTTAGC
78469767 CTTCGGGCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.49
Consensus pattern (21 bp):
CTTATGGGCTTCTATTTAGCA
Found at i:78472831 original size:35 final size:35
Alignment explanation
Indices: 78472792--78472861 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
78472782 GGAGTAAAAA
*
78472792 ATATGTTGCACTCTTTTCCTTTAACCAAGGTTTTT
1 ATATGTTGCACTCTTTTCCTTTAACCAAGATTTTT
*
78472827 ATATGTTGCACTCTTTTCCTTTAGCCAAGATTTTT
1 ATATGTTGCACTCTTTTCCTTTAACCAAGATTTTT
78472862 TCCCATTGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (35 bp):
ATATGTTGCACTCTTTTCCTTTAACCAAGATTTTT
Found at i:78473370 original size:19 final size:19
Alignment explanation
Indices: 78473346--78473425 Score: 119
Period size: 19 Copynumber: 4.3 Consensus size: 19
78473336 CCCAAACAAG
78473346 CCCAATAACTAAACCTAGA
1 CCCAATAACTAAACCTAGA
78473365 CCCAATAACTAAACCTAGA
1 CCCAATAACTAAACCTAGA
* *
78473384 CCC-A-AATTCAAACCTAAA
1 CCCAATAACT-AAACCTAGA
78473402 CCCAATAACTAAACCTAGA
1 CCCAATAACTAAACCTAGA
78473421 CCCAA
1 CCCAA
78473426 ATTACAAGCC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
17 3 0.06
18 12 0.22
19 36 0.67
20 3 0.06
ACGTcount: A:0.47, C:0.34, G:0.04, T:0.15
Consensus pattern (19 bp):
CCCAATAACTAAACCTAGA
Found at i:78473397 original size:37 final size:37
Alignment explanation
Indices: 78473356--78473428 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
78473346 CCCAATAACT
*
78473356 AAACCTAGACCCAATAACTAAACCTAGACCCAAATTC
1 AAACCTAAACCCAATAACTAAACCTAGACCCAAATTC
78473393 AAACCTAAACCCAATAACTAAACCTAGACCCAAATT
1 AAACCTAAACCCAATAACTAAACCTAGACCCAAATT
78473429 ACAAGCCCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.48, C:0.32, G:0.04, T:0.16
Consensus pattern (37 bp):
AAACCTAAACCCAATAACTAAACCTAGACCCAAATTC
Found at i:78493338 original size:61 final size:61
Alignment explanation
Indices: 78493212--78493338 Score: 137
Period size: 61 Copynumber: 2.1 Consensus size: 61
78493202 TATAATTAAT
* * ** * * *
78493212 TTTTAGAATTAGAAATAAATTGATAAATTTTGTAAATTTTTAGGGCTAAATTTATTGATTT
1 TTTTAGAATTAGAAATAAAATAATAAATTTTGTAAACATTGAGGGCTAAATTTATTGAATA
* * * * * *
78493273 TTTTAGAATTTGAATTAAAATAATAAATTTTGTAAACATTGAGGGTTTATTTTTTTGAATA
1 TTTTAGAATTAGAAATAAAATAATAAATTTTGTAAACATTGAGGGCTAAATTTATTGAATA
78493334 TTTTA
1 TTTTA
78493339 TATTTAAGAT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.49
Consensus pattern (61 bp):
TTTTAGAATTAGAAATAAAATAATAAATTTTGTAAACATTGAGGGCTAAATTTATTGAATA
Found at i:78495126 original size:40 final size:40
Alignment explanation
Indices: 78495076--78495192 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
78495066 CGTTTGGAGC
* * **
78495076 AAAAGCGCCGCTAAAGAGTGAGCAATAGCGGCGTTTAATT
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
78495116 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
78495156 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
78495193 TAGATAACGC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (40 bp):
AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
Found at i:78495441 original size:112 final size:112
Alignment explanation
Indices: 78495140--78495730 Score: 970
Period size: 113 Copynumber: 5.3 Consensus size: 112
78495130 AGAGTGAGCA
** *
78495140 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
78495205 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGGAC
78495253 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
78495318 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
* * *
78495365 TTAGTGGCATTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
78495430 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
**
78495476 TTAGTGGCGTTTATTGCGAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
*
78495541 CAAATAATACACCCAGATGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
* ** * * * *
78495588 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCC
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAT-AGATAACGCC
* *
78495653 GCAAATAATACTCCCAGACGGTGCCGTTTTGTGTCCTTTGGGGGGG-C
65 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
*
78495700 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
1 -TTAGTGGCGTTTATTGTAAAGCGCCGCTAA
78495731 TCTAGGTGTT
Statistics
Matches: 450, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
111 105 0.23
112 166 0.37
113 179 0.40
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (112 bp):
TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
Found at i:78495568 original size:223 final size:223
Alignment explanation
Indices: 78495157--78495730 Score: 977
Period size: 223 Copynumber: 2.6 Consensus size: 223
78495147 CGTTTAAGGA
* *
78495157 AAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGA
1 AAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAATAATACACCCAGA
78495222 CGGTGCCGTTTTGTGGCCTTTGGGGGGGGACTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAG
66 CGGTGCCGTTTTGTGGCCTTT--GGGGGGACTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAG
78495287 TGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGACGGTGCCGTTTTGTGGC
129 TGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGACGGTGCCGTTTTGTGGC
78495352 CTTTGGGGGGGACTTAGTGGCATTTATTGT
194 CTTTGGGGGGGACTTAGTGGCATTTATTGT
78495382 AAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAATAATACACCCAGA
1 AAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAATAATACACCCAGA
**
78495447 CGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGCGAAGCGCCGCTAAAGAGTG
66 CGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTG
*
78495512 AGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGATGGTGCCGTTTTGTGGCCT
131 AGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCT
*
78495577 TTGGGGGGGACTTAGTGGCGTTTATTGT
196 TTGGGGGGGACTTAGTGGCATTTATTGT
* * * * * *
78495605 AAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCCGCAAATAATACTCCCAG
1 AAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTAT-AAATAACGCCGCAAATAATACACCCAG
* * *
78495670 ACGGTGCCGTTTTGTGTCCTTTGGGGGGGCATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
65 ACGGTGCCGTTTTGTGGCCTTTGGGGGGAC-TTAGTGGCGTTTATTGTAAAGCGCCGCTAA
78495731 TCTAGGTGTT
Statistics
Matches: 330, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
223 167 0.51
224 52 0.16
225 111 0.34
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (223 bp):
AAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCGCAAATAATACACCCAGA
CGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTG
AGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCT
TTGGGGGGGACTTAGTGGCATTTATTGT
Found at i:78496359 original size:12 final size:12
Alignment explanation
Indices: 78496342--78496367 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78496332 ATATATAACT
78496342 GTAAAAGAGGTC
1 GTAAAAGAGGTC
78496354 GTAAAAGAGGTC
1 GTAAAAGAGGTC
78496366 GT
1 GT
78496368 GCTATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.35, T:0.19
Consensus pattern (12 bp):
GTAAAAGAGGTC
Found at i:78496871 original size:84 final size:84
Alignment explanation
Indices: 78496759--78496959 Score: 323
Period size: 84 Copynumber: 2.4 Consensus size: 84
78496749 TAGTTAAACT
* *
78496759 TTTAGTGGCGTTTTT-AAGAAAATGCCACAAATAATGCAATTCCAGACCACGAAAACGGTGTCGT
1 TTTAGTGGCGTTTTTCAA-AAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGT
78496823 TTCTGTTCACAGCTGTAATA
65 TTCTGTTCACAGCTGTAATA
* * *
78496843 TTTAGTGGCGTTTTTCTAAAAACACCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTTGTT
1 TTTAGTGGCGTTTTTCAAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
78496908 TCTGTTCACAGCTGTAATA
66 TCTGTTCACAGCTGTAATA
*
78496927 TTTAGTGGCGTTTTTACCAAAAACGCCACAAAA
1 TTTAGTGGCGTTTTT-CAAAAAACGCCACAAAA
78496960 CGGTGTTAAT
Statistics
Matches: 108, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
84 92 0.85
85 16 0.15
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (84 bp):
TTTAGTGGCGTTTTTCAAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
TCTGTTCACAGCTGTAATA
Found at i:78497980 original size:11 final size:11
Alignment explanation
Indices: 78497943--78497982 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
78497933 GAATATCTCA
78497943 AACT-ATGGGT
1 AACTAATGGGT
*
78497953 AACTAGTGGGT
1 AACTAATGGGT
78497964 AACTAATGGGT
1 AACTAATGGGT
78497975 AACTAATG
1 AACTAATG
78497983 TATTATCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:78499348 original size:17 final size:17
Alignment explanation
Indices: 78499326--78499483 Score: 149
Period size: 17 Copynumber: 8.6 Consensus size: 17
78499316 GTTAAATTTA
78499326 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
78499343 TTACTAAAATAAATTAC
1 TTACTAAAATACATTAC
*
78499360 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
78499383 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
78499400 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
78499417 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
78499440 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
78499457 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
78499474 TTACTAAAAT
1 TTACTAAAAT
78499484 TTGTTTAAAT
Statistics
Matches: 121, Mismatches: 4, Indels: 32
0.77 0.03 0.20
Matches are distributed among these distances:
16 6 0.05
17 84 0.69
23 25 0.21
24 6 0.05
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.41
Consensus pattern (17 bp):
TTACTAAAATACATTAC
Done.