Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 232 of 311
Found at i:78499405 original size:57 final size:57
Alignment explanation
Indices: 78499317--78499516 Score: 364
Period size: 57 Copynumber: 3.5 Consensus size: 57
78499307 CGATTGAATG
*
78499317 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
78499374 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
78499431 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
* **
78499488 TTAAATTTATTACTTAAATATGTTACTTA
1 TTAAATTTATTACTAAAATACATTACTTA
78499517 AATTTATTAC
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 139 1.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (57 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
Found at i:78499506 original size:13 final size:13
Alignment explanation
Indices: 78499488--78499558 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
78499478 TAAAATTTGT
78499488 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
78499501 TTAAATATGTTAC
1 TTAAATTTATTAC
78499514 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
78499527 TTAAATATGTTAC
1 TTAAATTTATTAC
78499540 TTAAATTTATTAC
1 TTAAATTTATTAC
78499553 TTAAAT
1 TTAAAT
78499559 AATTATAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (13 bp):
TTAAATTTATTAC
Found at i:78499524 original size:26 final size:26
Alignment explanation
Indices: 78499488--78499559 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
78499478 TAAAATTTGT
78499488 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
78499514 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
78499540 TTAAATTTATTACTTAAATA
1 TTAAATTTATTACTTAAATA
78499560 ATTATAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (26 bp):
TTAAATTTATTACTTAAATATGTTAC
Found at i:78499861 original size:142 final size:143
Alignment explanation
Indices: 78499701--78499993 Score: 527
Period size: 142 Copynumber: 2.0 Consensus size: 143
78499691 AAGATAAAAT
78499701 AAAATATAAAAAAATATGTGGAATACTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAAT
1 AAAAT-TAAAAAAATATGTGGAATACTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAAT
78499766 ATTATTAATAATTATAAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTT
65 ATTATTAATAATTAT-AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTT
78499831 TATT-AA-ATTATTA
129 TATTAAATATTATTA
* *
78499844 AAAATTAAAAAAATATGTGTAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATA
1 AAAATTAAAAAAATATGTGGAATACTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATA
78499909 TTATTAATAATTATAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTA
66 TTATTAATAATTATAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTA
78499974 TTAAATATTATTA
131 TTAAATATTATTA
*
78499987 ATAATTA
1 AAAATTA
78499994 TATTACTTAC
Statistics
Matches: 145, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
141 53 0.37
142 74 0.51
143 18 0.12
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (143 bp):
AAAATTAAAAAAATATGTGGAATACTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATA
TTATTAATAATTATAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTA
TTAAATATTATTA
Found at i:78499967 original size:72 final size:72
Alignment explanation
Indices: 78499709--78499995 Score: 517
Period size: 72 Copynumber: 4.0 Consensus size: 72
78499699 ATAAAATATA
*
78499709 AAAAAATATGTGGAATACTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
78499774 TAATTAT
66 TAATTAT
78499781 AAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATT-AA-ATTATTA
1 -AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
*
78499844 AAAATTA-
65 ATAATTAT
*
78499851 AAAAAATATGTGTAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
78499916 TAATTAT
66 TAATTAT
78499923 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
78499988 TAATTAT
66 TAATTAT
78499995 A
1 A
78499996 TTACTTACAA
Statistics
Matches: 206, Mismatches: 5, Indels: 7
0.94 0.02 0.03
Matches are distributed among these distances:
69 52 0.25
70 2 0.01
71 26 0.13
72 74 0.36
73 52 0.25
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.41
Consensus pattern (72 bp):
AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
TAATTAT
Found at i:78500027 original size:18 final size:18
Alignment explanation
Indices: 78500004--78500072 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 18
78499994 TATTACTTAC
78500004 AACTTACATAATACATTT
1 AACTTACATAATACATTT
78500022 AACTTACAACTTACATAATACATTT
1 AACTT---AC----ATAATACATTT
*
78500047 AACTGACATAATACATTT
1 AACTTACATAATACATTT
78500065 AACTTACA
1 AACTTACA
78500073 ACTTACACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
18 23 0.55
21 2 0.05
22 2 0.05
25 15 0.36
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:78500027 original size:25 final size:25
Alignment explanation
Indices: 78499998--78500294 Score: 379
Period size: 25 Copynumber: 12.3 Consensus size: 25
78499988 TAATTATATT
78499998 ACTTACAACTTACATAATACATTTA
1 ACTTACAACTTACATAATACATTTA
78500023 ACTTACAACTTACATAATACA--T-
1 ACTTACAACTTACATAATACATTTA
*
78500045 --TT--AACTGACATAATACATTTA
1 ACTTACAACTTACATAATACATTTA
* *
78500066 ACTTACAACTTACACAATACATAATA
1 ACTTACAACTTACATAATACAT-TTA
*
78500092 ACTTACAACTTACATAATACATAATA
1 ACTTACAACTTACATAATACAT-TTA
* *
78500118 ACTTACAACTTACACAATACATAATA
1 ACTTACAACTTACATAATACAT-TTA
*
78500144 ACTTACAACTTACATAATACATAATA
1 ACTTACAACTTACATAATACAT-TTA
78500170 ACTTACAACTTACATAATACATTTA
1 ACTTACAACTTACATAATACATTTA
*
78500195 ACTTACAACTTACATAATACATGTA
1 ACTTACAACTTACATAATACATTTA
78500220 ACTTACAACTTACATAATACA--T-
1 ACTTACAACTTACATAATACATTTA
78500242 --TT--AACTTACATAATACATTTA
1 ACTTACAACTTACATAATACATTTA
*
78500263 ACTTACAACTTACACAATACATTTA
1 ACTTACAACTTACATAATACATTTA
78500288 ACTTACA
1 ACTTACA
78500295 TAATAACTTA
Statistics
Matches: 247, Mismatches: 10, Indels: 30
0.86 0.03 0.10
Matches are distributed among these distances:
18 29 0.12
20 6 0.02
23 6 0.02
25 107 0.43
26 99 0.40
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.33
Consensus pattern (25 bp):
ACTTACAACTTACATAATACATTTA
Found at i:78500070 original size:43 final size:45
Alignment explanation
Indices: 78500004--78500299 Score: 316
Period size: 43 Copynumber: 6.3 Consensus size: 45
78499994 TATTACTTAC
*
78500004 AACTTACATAATACATTTAACTTACAACTTACATAATACAT-TT-
1 AACTTACATAATACATTTAACTTACAACTTACACAATACATATTA
*
78500047 AACTGACATAATACATTTAACTTACAACTTACACAATACATAATAACTTA
1 AACTTACATAATACATTTAACTTACAACTTACACAATAC---AT-A-TTA
*
78500097 CAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAACTTA
1 -AACTTACATAATACAT-TTAACTTACAACTTACACAATAC---AT-A-TTA
* *
78500149 CAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACTTA
1 -AACTTACATAATACAT-TTAACTTACAACTTACACAATACA--T-A-TTA
* *
78500200 CAACTTACATAATACATGTAACTTACAACTTACATAATACAT-TT-
1 -AACTTACATAATACATTTAACTTACAACTTACACAATACATATTA
78500244 AACTTACATAATACATTTAACTTACAACTTACACAATACAT-TT-
1 AACTTACATAATACATTTAACTTACAACTTACACAATACATATTA
78500287 AACTTACATAATA
1 AACTTACATAATA
78500300 ACTTACATAA
Statistics
Matches: 234, Mismatches: 8, Indels: 22
0.89 0.03 0.08
Matches are distributed among these distances:
43 91 0.39
45 2 0.01
46 2 0.01
48 1 0.00
49 3 0.01
50 23 0.10
51 39 0.17
52 73 0.31
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.33
Consensus pattern (45 bp):
AACTTACATAATACATTTAACTTACAACTTACACAATACATATTA
Found at i:78500079 original size:18 final size:18
Alignment explanation
Indices: 78500029--78500068 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
78500019 TTTAACTTAC
*
78500029 AACTTACATAATACATTT
1 AACTGACATAATACATTT
78500047 AACTGACATAATACATTT
1 AACTGACATAATACATTT
78500065 AACT
1 AACT
78500069 TACAACTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (18 bp):
AACTGACATAATACATTT
Found at i:78500096 original size:19 final size:18
Alignment explanation
Indices: 78500072--78500162 Score: 64
Period size: 19 Copynumber: 5.1 Consensus size: 18
78500062 TTTAACTTAC
78500072 AACTTACACAATACATAAT
1 AACTTACA-AATACATAAT
*
78500091 AACTTACAACTTACATAAT
1 AACTTACAA-ATACATAAT
* * * *
78500110 -ACATA-ATA-AC-TTAC
1 AACTTACAAATACATAAT
78500124 AACTTACACAATACATAAT
1 AACTTACA-AATACATAAT
*
78500143 AACTTACAACTTACATAAT
1 AACTTACAA-ATACATAAT
78500162 A
1 A
78500163 CATAATAACT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
14 2 0.04
15 6 0.11
16 1 0.02
17 2 0.04
18 8 0.15
19 35 0.65
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.29
Consensus pattern (18 bp):
AACTTACAAATACATAAT
Found at i:78500100 original size:26 final size:25
Alignment explanation
Indices: 78500047--78500294 Score: 330
Period size: 26 Copynumber: 10.0 Consensus size: 25
78500037 TAATACATTT
* *
78500047 AACTGACATAATACATTTAACTTAC
1 AACTTACATAATACATATAACTTAC
*
78500072 AACTTACACAATACATAATAACTTAC
1 AACTTACATAATACAT-ATAACTTAC
78500098 AACTTACATAATACATAATAACTTAC
1 AACTTACATAATACAT-ATAACTTAC
*
78500124 AACTTACACAATACATAATAACTTAC
1 AACTTACATAATACAT-ATAACTTAC
78500150 AACTTACATAATACATAATAACTTAC
1 AACTTACATAATACAT-ATAACTTAC
*
78500176 AACTTACATAATACATTTAACTTAC
1 AACTTACATAATACATATAACTTAC
*
78500201 AACTTACATAATACATGTAACTTAC
1 AACTTACATAATACATATAACTTAC
78500226 AACTTACATAATAC--AT---TT--
1 AACTTACATAATACATATAACTTAC
*
78500244 AACTTACATAATACATTTAACTTAC
1 AACTTACATAATACATATAACTTAC
* *
78500269 AACTTACACAATACATTTAACTTAC
1 AACTTACATAATACATATAACTTAC
78500294 A
1 A
78500295 TAATAACTTA
Statistics
Matches: 204, Mismatches: 11, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
18 14 0.07
20 3 0.01
23 3 0.01
25 85 0.42
26 99 0.49
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.32
Consensus pattern (25 bp):
AACTTACATAATACATATAACTTAC
Found at i:78500199 original size:18 final size:18
Alignment explanation
Indices: 78500176--78500269 Score: 85
Period size: 18 Copynumber: 5.4 Consensus size: 18
78500166 AATAACTTAC
78500176 AACTTACATAATACATTT
1 AACTTACATAATACATTT
*
78500194 AACTTACA-ACTTACA--T
1 AACTTACATA-ATACATTT
* *
78500210 AA--TACAT-GTA-ACTT
1 AACTTACATAATACATTT
78500224 ACAACTTACATAATACATTT
1 A-A-CTTACATAATACATTT
78500244 AACTTACATAATACATTT
1 AACTTACATAATACATTT
78500262 AACTTACA
1 AACTTACA
78500270 ACTTACACAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
12 1 0.02
13 2 0.03
14 6 0.10
15 1 0.02
16 3 0.05
17 1 0.02
18 41 0.66
19 3 0.05
20 4 0.06
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:78500276 original size:18 final size:18
Alignment explanation
Indices: 78500226--78500269 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
78500216 TGTAACTTAC
78500226 AACTTACATAATACATTT
1 AACTTACATAATACATTT
78500244 AACTTACATAATACATTT
1 AACTTACATAATACATTT
78500262 AACTTACA
1 AACTTACA
78500270 ACTTACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:78500303 original size:12 final size:12
Alignment explanation
Indices: 78500286--78500311 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78500276 ACAATACATT
78500286 TAACTTACATAA
1 TAACTTACATAA
78500298 TAACTTACATAA
1 TAACTTACATAA
78500310 TA
1 TA
78500312 CATTGATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
TAACTTACATAA
Found at i:78500571 original size:21 final size:21
Alignment explanation
Indices: 78500545--78500615 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
78500535 CTACAACTTA
* *
78500545 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
78500566 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
78500587 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
78500608 AAGCAGAG
1 AAGCAGAG
78500616 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:78501272 original size:42 final size:42
Alignment explanation
Indices: 78500941--78501272 Score: 348
Period size: 42 Copynumber: 7.9 Consensus size: 42
78500931 TTTTGTATAA
* * * ***
78500941 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCG-TTTGTAAA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCT
** * *******
78500982 AAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAAAA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTCCT
* * *
78501025 AAACGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCC-T
*
78501067 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTCCCTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCC-T
78501109 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCT
* * * *
78501151 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGC-GTTTTTTCCT
* *
78501193 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCT
* *
78501235 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
78501273 GTTTGTAAAC
Statistics
Matches: 253, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
41 38 0.15
42 168 0.66
43 47 0.19
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCT
Found at i:78503246 original size:40 final size:40
Alignment explanation
Indices: 78503202--78503319 Score: 131
Period size: 40 Copynumber: 3.1 Consensus size: 40
78503192 GGGTTAGCCG
78503202 ACAATATTGAATGTGAGCCCAGCTCTAGCTGGATAAACCA
1 ACAATATTGAATGTGAGCCCAGCTCTAGCTGGATAAACCA
* * * *
78503242 ACAATGTT---TGT--GCCCAGCTCTAGTCAGG-TATACCG
1 ACAATATTGAATGTGAGCCCAGCTCTAG-CTGGATAAACCA
* *
78503277 ACAATATTGAATGTGAGTCCAGCTCTAGTTGGATAAACCA
1 ACAATATTGAATGTGAGCCCAGCTCTAGCTGGATAAACCA
78503317 ACA
1 ACA
78503320 GTGTTTGAGC
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
35 24 0.39
36 3 0.05
37 3 0.05
38 3 0.05
39 2 0.03
40 26 0.43
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (40 bp):
ACAATATTGAATGTGAGCCCAGCTCTAGCTGGATAAACCA
Found at i:78503257 original size:35 final size:35
Alignment explanation
Indices: 78503218--78503333 Score: 99
Period size: 35 Copynumber: 3.2 Consensus size: 35
78503208 TTGAATGTGA
78503218 GCCCAGCTCTAGCTGGATAAACCAACAATGTTTGT
1 GCCCAGCTCTAGCTGGATAAACCAACAATGTTTGT
* * * *
78503253 GCCCAGCTCTAGTCAGG-TATACCGACAATATTGAATGT
1 GCCCAGCTCTAG-CTGGATAAACCAACAATGTT---TGT
* * * *
78503291 GAGTCCAGCTCTAGTTGGATAAACCAACAGTGTTTGA
1 --GCCCAGCTCTAGCTGGATAAACCAACAATGTTTGT
78503328 GCCCAG
1 GCCCAG
78503334 TGCTAGTTGG
Statistics
Matches: 61, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
35 29 0.48
36 3 0.05
37 2 0.03
38 3 0.05
39 2 0.03
40 22 0.36
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (35 bp):
GCCCAGCTCTAGCTGGATAAACCAACAATGTTTGT
Found at i:78503299 original size:75 final size:75
Alignment explanation
Indices: 78503172--78503333 Score: 238
Period size: 75 Copynumber: 2.2 Consensus size: 75
78503162 TAATTCAAGA
* *
78503172 GTTTGTGCCCAACGTTAGTCGGGTTAGCCGACAATATTGAATGTGAGCCCAGCTCTAGCTGGATA
1 GTTTGTGCCCAGCGTTAGTCAGGTTAGCCGACAATATTGAATGTGAGCCCAGCTCTAGCTGGATA
78503237 AACCAACAAT
66 AACCAACAAT
* *
78503247 GTTTGTGCCCAGC-TCTAGTCAGGTATA-CCGACAATATTGAATGTGAGTCCAGCTCTAGTTGGA
1 GTTTGTGCCCAGCGT-TAGTCAGGT-TAGCCGACAATATTGAATGTGAGCCCAGCTCTAGCTGGA
*
78503310 TAAACCAACAGT
64 TAAACCAACAAT
*
78503322 GTTTGAGCCCAG
1 GTTTGTGCCCAG
78503334 TGCTAGTTGG
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
74 1 0.01
75 76 0.96
76 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (75 bp):
GTTTGTGCCCAGCGTTAGTCAGGTTAGCCGACAATATTGAATGTGAGCCCAGCTCTAGCTGGATA
AACCAACAAT
Found at i:78505698 original size:36 final size:35
Alignment explanation
Indices: 78505612--78505698 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 35
78505602 AAATTCACAT
*
78505612 TTCAATTCAATTTCACTTTTTCACTTTTAATAACAA
1 TTCAATTCAA-TTCACTTTTCCACTTTTAATAACAA
*
78505648 TTCAATTCAAAATTCACTTTTCCA-TTTTCAAGTCAA-TA
1 TTCAATTC--AATTCACTTTTCCACTTTT-AA-T-AACAA
78505686 TTCAATTCAATTC
1 TTCAATTCAATTC
78505699 CACACATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
36 17 0.39
37 13 0.30
38 12 0.27
39 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.01, T:0.45
Consensus pattern (35 bp):
TTCAATTCAATTCACTTTTCCACTTTTAATAACAA
Found at i:78506008 original size:17 final size:18
Alignment explanation
Indices: 78505976--78506009 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
78505966 AATTTCTTTT
78505976 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
78505994 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
78506010 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:78506474 original size:11 final size:12
Alignment explanation
Indices: 78506452--78506480 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
78506442 TCTCCTTCAT
78506452 TTCTTTCATTTA
1 TTCTTTCATTTA
78506464 TTCTTTC-TTTA
1 TTCTTTCATTTA
78506475 TTCTTT
1 TTCTTT
78506481 TATGTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (12 bp):
TTCTTTCATTTA
Found at i:78512453 original size:39 final size:39
Alignment explanation
Indices: 78512405--78512589 Score: 307
Period size: 39 Copynumber: 4.7 Consensus size: 39
78512395 TGTATGAGAT
*
78512405 TTATATCCGGGCTAAGTTGCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGATA
* * *
78512444 TTATATCCGGGTTAAGTTCCGAAGGTATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGATA
*
78512483 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGATA
* *
78512522 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGATA
78512561 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTTCCGAAGGCATT
78512590 TGGGTTGGAA
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 136 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGATA
Found at i:78516576 original size:4 final size:4
Alignment explanation
Indices: 78516567--78516614 Score: 96
Period size: 4 Copynumber: 12.0 Consensus size: 4
78516557 TTGATCAAGA
78516567 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
78516615 AAGCTCTTAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:78521763 original size:18 final size:18
Alignment explanation
Indices: 78521730--78521764 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78521720 TAATTGGTGC
*
78521730 TTTTTTTTTCTTTTTTCT
1 TTTTTTTTTCTATTTTCT
*
78521748 TTTTTTTTTGTATTTTC
1 TTTTTTTTTCTATTTTC
78521765 CAAGTTTGCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.09, G:0.03, T:0.86
Consensus pattern (18 bp):
TTTTTTTTTCTATTTTCT
Found at i:78529203 original size:29 final size:29
Alignment explanation
Indices: 78529166--78529225 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
78529156 ATTTATAACT
* *
78529166 TTTAAAATAGTCAC-TTTTGTTCACTTATA
1 TTTAAAATA-TCACGTTCTGGTCACTTATA
*
78529195 TTTAAAATATTACGTTCTGGTCACTTATA
1 TTTAAAATATCACGTTCTGGTCACTTATA
78529224 TT
1 TT
78529226 ATTATATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 3 0.11
29 24 0.89
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.48
Consensus pattern (29 bp):
TTTAAAATATCACGTTCTGGTCACTTATA
Found at i:78530688 original size:39 final size:39
Alignment explanation
Indices: 78530634--78530742 Score: 146
Period size: 39 Copynumber: 2.8 Consensus size: 39
78530624 AAAAATTATA
* * * *
78530634 TTTAATACTACAAAAAAGTTATTATATTTATTTGTATTT
1 TTTAATACAATAAAAAATTTATTATATTTATTTGGATTT
*
78530673 TTTAATACAATAAAAAATTTATTATATTTATTTGGGTTT
1 TTTAATACAATAAAAAATTTATTATATTTATTTGGATTT
* * *
78530712 TTTAATATAATAAAATATTTAGTATATTTAT
1 TTTAATACAATAAAAAATTTATTATATTTAT
78530743 GGTAATTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (39 bp):
TTTAATACAATAAAAAATTTATTATATTTATTTGGATTT
Found at i:78530752 original size:39 final size:39
Alignment explanation
Indices: 78530645--78530761 Score: 130
Period size: 39 Copynumber: 3.0 Consensus size: 39
78530635 TTAATACTAC
* * * *
78530645 AAAAAAGTTATTATATTTATTTGTATTTTTTAATACAAT
1 AAAAAATTTAGTATATTTATTGGTATTTTTTAATATAAT
* *
78530684 AAAAAATTTATTATATTTATTTGG-GTTTTTTAATATAAT
1 AAAAAATTTAGTATATTTA-TTGGTATTTTTTAATATAAT
*
78530723 AAAATATTTAGTATATTTA-TGGTAATTTTTTTAATATAA
1 AAAAAATTTAGTATATTTATTGGT-A-TTTTTTAATATAA
78530762 ATACTTTTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
37 3 0.04
39 48 0.72
40 16 0.24
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (39 bp):
AAAAAATTTAGTATATTTATTGGTATTTTTTAATATAAT
Found at i:78531508 original size:29 final size:29
Alignment explanation
Indices: 78531475--78531532 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
78531465 ATGAAGTTAA
78531475 AAGCTTGTAGCCCTAAGAATGACATCTCC
1 AAGCTTGTAGCCCTAAGAATGACATCTCC
78531504 AAGCTTGTAGCCCTAAGAATGACATCTCC
1 AAGCTTGTAGCCCTAAGAATGACATCTCC
78531533 CTAATTATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (29 bp):
AAGCTTGTAGCCCTAAGAATGACATCTCC
Found at i:78534627 original size:12 final size:12
Alignment explanation
Indices: 78534610--78534639 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
78534600 TGTGAAAAAT
78534610 AAAATAAAATAA
1 AAAATAAAATAA
78534622 AAAATAAAATAA
1 AAAATAAAATAA
*
78534634 AGAATA
1 AAAATA
78534640 CACAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:78540465 original size:26 final size:24
Alignment explanation
Indices: 78540436--78540510 Score: 60
Period size: 26 Copynumber: 2.9 Consensus size: 24
78540426 TCTTCTTAAT
*
78540436 TATTTCATACAACTATTTTGTACATA
1 TATTTCATACAACAATTTTGTA-A-A
* *
78540462 TATTTCCATATGACCAATTCTTGTAAA
1 TATTT-CATA-CAACAATT-TTGTAAA
* *
78540489 CATTTCATACAACCATTTTGTA
1 TATTTCATACAACAATTTTGTA
78540511 TAACCAATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
24 5 0.13
25 5 0.13
26 9 0.23
27 9 0.23
28 6 0.15
29 5 0.13
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (24 bp):
TATTTCATACAACAATTTTGTAAA
Found at i:78540515 original size:13 final size:13
Alignment explanation
Indices: 78540489--78540531 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
78540479 TTCTTGTAAA
*
78540489 CATTTCATACAAC
1 CATTTCATATAAC
**
78540502 CATTTTGTATAAC
1 CATTTCATATAAC
*
78540515 CAATTCATATAAC
1 CATTTCATATAAC
78540528 CATT
1 CATT
78540532 CGTCATCTTG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.37
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:78540685 original size:46 final size:46
Alignment explanation
Indices: 78540635--78540845 Score: 302
Period size: 46 Copynumber: 4.6 Consensus size: 46
78540625 CCATAGTGTT
* * *
78540635 TTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCC-ATGGTATC
1 TTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCAAT-GTATC
* ** * *
78540681 TTTCAACCACGGTCTTATTCATTTCATGTCACGTTGCC-ATGGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAAT-GTATC
78540727 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAATGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAATGTATC
78540773 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAATGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAATGTATC
78540819 TTTCAACCATGGTCTTACACATTTCAT
1 TTTCAACCATGGTCTTACACATTTCAT
78540846 TTCAGAAAGC
Statistics
Matches: 154, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
45 4 0.03
46 148 0.96
47 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAATGTATC
Found at i:78540776 original size:25 final size:25
Alignment explanation
Indices: 78540748--78540823 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
78540738 GTCTTACACA
78540748 TTTCATATCATGTTGCCAATGTATC
1 TTTCATATCATGTTGCCAATGTATC
* * *
78540773 TTTCA-ACCATG--GTC--T-TACAC
1 TTTCATATCATGTTGCCAATGTA-TC
78540793 ATTTCATATCATGTTGCCAATGTATC
1 -TTTCATATCATGTTGCCAATGTATC
78540819 TTTCA
1 TTTCA
78540824 ACCATGGTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
19 2 0.05
20 2 0.05
21 5 0.14
22 7 0.19
24 7 0.19
25 10 0.27
26 2 0.05
27 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (25 bp):
TTTCATATCATGTTGCCAATGTATC
Found at i:78543380 original size:28 final size:28
Alignment explanation
Indices: 78543332--78543385 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
78543322 CAAATACCTA
*
78543332 TTTTTGTAATTAATATGTTTTTTATACT
1 TTTTTGTAATTAATATATTTTTTATACT
78543360 TTTTTCGTAATTAAT-TATTTTTTATA
1 TTTTT-GTAATTAATATATTTTTTATA
78543386 TTATTTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.65
Consensus pattern (28 bp):
TTTTTGTAATTAATATATTTTTTATACT
Found at i:78547705 original size:31 final size:31
Alignment explanation
Indices: 78547643--78547707 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
78547633 CATCCCAATT
* *
78547643 ACTTAAATAAAAACTTTTGAATAGTTGAGTG
1 ACTTAAATAAAAACTTTAGAATAATTGAGTG
* *
78547674 ACTTAAATAAAAACTTTAGCATAATTTAGTG
1 ACTTAAATAAAAACTTTAGAATAATTGAGTG
78547705 ACT
1 ACT
78547708 ATTTTATAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.35
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTAGAATAATTGAGTG
Found at i:78548435 original size:13 final size:12
Alignment explanation
Indices: 78548419--78548476 Score: 59
Period size: 12 Copynumber: 4.9 Consensus size: 12
78548409 ATAATCATTA
78548419 AATATTTTTAATT
1 AATA-TTTTAATT
**
78548432 AATATTTTAAAA
1 AATATTTTAATT
78548444 AATATTTT--TT
1 AATATTTTAATT
78548454 AAT-TTTTAATT
1 AATATTTTAATT
78548465 AATAATTTTAAT
1 AAT-ATTTTAAT
78548477 ACATTTATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 4 0.11
10 3 0.08
11 5 0.14
12 14 0.38
13 11 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATATTTTAATT
Found at i:78548468 original size:21 final size:22
Alignment explanation
Indices: 78548430--78548477 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
78548420 ATATTTTTAA
*
78548430 TTAATATTTTAAAAAATATTTT
1 TTAATATTTTAAAAAATAATTT
**
78548452 TTAAT-TTTTAATTAATAA-TT
1 TTAATATTTTAAAAAATAATTT
78548472 TTAATA
1 TTAATA
78548478 CATTTATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 7 0.32
21 10 0.45
22 5 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATATTTTAAAAAATAATTT
Found at i:78551467 original size:266 final size:266
Alignment explanation
Indices: 78550993--78551528 Score: 1018
Period size: 266 Copynumber: 2.0 Consensus size: 266
78550983 TGTACATGAC
*
78550993 TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTTTGCTCATTGCAACTC
1 TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC
*
78551058 TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATTATGTCAATGAATTTCTGAAG
66 TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
*
78551123 ATTTTAGAGTTTTAAATGAAGATTTACTATTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
131 ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
78551188 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
196 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
78551253 CACATA
261 CACATA
* *
78551259 TTTTGCTTGATAAATGCAGCCAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC
1 TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC
*
78551324 TGATTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
66 TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
78551389 ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
131 ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
78551454 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
196 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
78551519 CACATA
261 CACATA
78551525 TTTT
1 TTTT
78551529 CCTTCTAGAA
Statistics
Matches: 264, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
266 264 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.40
Consensus pattern (266 bp):
TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC
TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
CACATA
Found at i:78555234 original size:4 final size:4
Alignment explanation
Indices: 78555225--78555252 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
78555215 ACTGTCTTTA
78555225 ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT
78555253 GCATGCATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:78560302 original size:51 final size:51
Alignment explanation
Indices: 78560238--78560456 Score: 188
Period size: 51 Copynumber: 4.7 Consensus size: 51
78560228 TGGAAACATG
*
78560238 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
* *
78560289 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATG--AT---
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
*
78560335 A---T----GATATGATATTATAATCTTAGAGAT-------ATGATATGAA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
* * * * *
78560372 ATCTTATAAGATATTATTTTATATTCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
* * * *
78560423 ATCTTAGAAGATATGATTTTATATTATTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
78560457 TTGATTTGTA
Statistics
Matches: 138, Mismatches: 11, Indels: 38
0.74 0.06 0.20
Matches are distributed among these distances:
32 3 0.02
34 2 0.01
37 1 0.01
39 24 0.17
40 1 0.01
43 1 0.01
44 22 0.16
46 1 0.01
49 2 0.01
51 81 0.59
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
Found at i:78560347 original size:39 final size:39
Alignment explanation
Indices: 78560298--78560420 Score: 138
Period size: 39 Copynumber: 3.0 Consensus size: 39
78560288 AATCTTATAA
78560298 GATATTATATTATAATCTTAGAGATCTTAGATATGATAT
1 GATATTATATTATAATCTTAGAGATCTTAGATATGATAT
* * * * *
78560337 GATATGATATTATAATCTTAGAGATATGATATGAAATCTTATAA
1 GATATTATATTATAATCTTAGAGATCT--TA-G--ATATGATAT
* *
78560381 GATATTATTTTATATTCTTAGAGATCTTAGATATGATAT
1 GATATTATATTATAATCTTAGAGATCTTAGATATGATAT
78560420 G
1 G
78560421 TAATCTTAGA
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
39 32 0.48
41 3 0.04
42 3 0.04
44 29 0.43
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (39 bp):
GATATTATATTATAATCTTAGAGATCTTAGATATGATAT
Found at i:78563277 original size:51 final size:51
Alignment explanation
Indices: 78563213--78563312 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
78563203 TGGAAACATG
* * *
78563213 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAAAGATATTAGATATGATATGGA
* *
78563264 ATCTTATAAGATATTATATTATAATCTTAAAGATATTAGATATGATATG
1 ATCTTAAAAGATATGATATTATAATCTTAAAGATATTAGATATGATATG
78563313 ATATTATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.41, C:0.05, G:0.13, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAAAGATATTAGATATGATATGGA
Found at i:78563298 original size:44 final size:44
Alignment explanation
Indices: 78563250--78563380 Score: 164
Period size: 44 Copynumber: 3.1 Consensus size: 44
78563240 TAGAGATCTT
*
78563250 AGATATGATATGGAATCTTATAAGATATTATATTATAATCTTAA
1 AGATATGATATGGAATCTTATAAGATATTATATTATAATCTTAG
* * *
78563294 AGATAT--TA--G-ATATGATATGATATTATATTATAATCTTAG
1 AGATATGATATGGAATCTTATAAGATATTATATTATAATCTTAG
* * *
78563333 AGATATGATATGAAATCTTATAAGATATTATTTTATATTCTTAG
1 AGATATGATATGGAATCTTATAAGATATTATATTATAATCTTAG
78563377 AGAT
1 AGAT
78563381 CTTAGATATG
Statistics
Matches: 72, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
39 32 0.44
40 1 0.01
41 2 0.03
42 2 0.03
44 35 0.49
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (44 bp):
AGATATGATATGGAATCTTATAAGATATTATATTATAATCTTAG
Found at i:78563316 original size:39 final size:39
Alignment explanation
Indices: 78563273--78563395 Score: 138
Period size: 39 Copynumber: 3.0 Consensus size: 39
78563263 AATCTTATAA
*
78563273 GATATTATATTATAATCTTAAAGATATTAGATATGATAT
1 GATATTATATTATAATCTTAGAGATATTAGATATGATAT
* * *
78563312 GATATTATATTATAATCTTAGAGATATGATATGAAATCTTATAA
1 GATATTATATTATAATCTTAGAGATAT--TA-G--ATATGATAT
* * *
78563356 GATATTATTTTATATTCTTAGAGATCTTAGATATGATAT
1 GATATTATATTATAATCTTAGAGATATTAGATATGATAT
78563395 G
1 G
78563396 TAATCTTAGA
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.48
41 3 0.04
42 3 0.04
44 30 0.43
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (39 bp):
GATATTATATTATAATCTTAGAGATATTAGATATGATAT
Found at i:78563380 original size:22 final size:22
Alignment explanation
Indices: 78563263--78563380 Score: 86
Period size: 22 Copynumber: 5.5 Consensus size: 22
78563253 TATGATATGG
*
78563263 AATCTTATAAGATATTATATTAT
1 AATCTTA-GAGATATTATATTAT
* *
78563286 AATCTTAAAGATATTAGA-TAT
1 AATCTTAGAGATATTATATTAT
* *
78563307 GA---TA-TGATATTATATTAT
1 AATCTTAGAGATATTATATTAT
* *
78563325 AATCTTAGAGATATGATATGA-
1 AATCTTAGAGATATTATATTAT
* *
78563346 AATCTTATAAGATATTATTTTAT
1 AATCTTA-GAGATATTATATTAT
*
78563369 ATTCTTAGAGAT
1 AATCTTAGAGAT
78563381 CTTAGATATG
Statistics
Matches: 74, Mismatches: 14, Indels: 15
0.72 0.14 0.15
Matches are distributed among these distances:
17 8 0.11
18 6 0.08
21 13 0.18
22 34 0.46
23 13 0.18
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (22 bp):
AATCTTAGAGATATTATATTAT
Found at i:78563395 original size:51 final size:51
Alignment explanation
Indices: 78563333--78563431 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
78563323 ATAATCTTAG
* * *
78563333 AGATATGATATGAAATCTTATAAGATATTATTTTATATTCTTAGAGATCTT
1 AGATATGATATGAAATCTTAGAAGATATAATTTTATATTATTAGAGATCTT
*
78563384 AGATATGATATGTAATCTTAGAAGATATAATTTTATATTATTAGAGAT
1 AGATATGATATGAAATCTTAGAAGATATAATTTTATATTATTAGAGAT
78563432 TTGATTTGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.39, C:0.04, G:0.13, T:0.43
Consensus pattern (51 bp):
AGATATGATATGAAATCTTAGAAGATATAATTTTATATTATTAGAGATCTT
Found at i:78567220 original size:41 final size:40
Alignment explanation
Indices: 78567145--78567434 Score: 178
Period size: 41 Copynumber: 7.1 Consensus size: 40
78567135 GCAAAAATTG
78567145 TAAAACACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
*
78567186 TAAAAACAGAGCAATAACGGCGTTTT-CCTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTACC--AAAAACGCCGC
* * ***
78567227 TAAAAACAGAGCATTAGCGGCGCTCTT-GGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
* * *** *
78567267 TAAAGACCAGAGCATTAGCGGCGCTTTT-GGTAAAACGTCGC
1 TAAA-AACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
** * * ***
78567308 TAAAGCCAGAGCATTAGCGGCGCTTCT-GGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
* * ***
78567348 TAAAGATCAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGC
1 TAAA-AACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
* * ***
78567389 TAAAGACCAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGC
1 TAAA-AACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
78567430 TAAAA
1 TAAAA
78567435 GTCATATAAC
Statistics
Matches: 227, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 72 0.32
41 150 0.66
42 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
Found at i:78567302 original size:81 final size:80
Alignment explanation
Indices: 78567176--78567433 Score: 367
Period size: 81 Copynumber: 3.2 Consensus size: 80
78567166 CGTTTTACCA
* * ** *
78567176 AAAACGCCGCTAAA-AACAGAGCAATAACGGCG-TTTTCCTAAAAAACGCCGCTAAAAACAGAGC
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT--AAAACGCCGCTAAAACCAGAGC
78567239 ATTAGCGGCGCTCTTGGT
64 ATTAGCGGCGCT-TTGGT
* * *
78567257 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGCTAAAGCCAGAGCAT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAACCAGAGCAT
78567322 TAGCGGCGCTTCTGGT
66 TAGCGGCGCTT-TGGT
*
78567338 AAAACGCCGCTAAAGATCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGAGCA
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA-ACCAGAGCA
78567403 TTAGCGGCGCTTTTGGT
65 TTAGCGGCGC-TTTGGT
78567420 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
78567434 AGTCATATAA
Statistics
Matches: 161, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
80 1 0.01
81 102 0.63
82 51 0.32
83 7 0.04
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (80 bp):
AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAACCAGAGCAT
TAGCGGCGCTTTGGT
Found at i:78570209 original size:90 final size:90
Alignment explanation
Indices: 78570021--78570364 Score: 291
Period size: 90 Copynumber: 3.9 Consensus size: 90
78570011 AATTTGATTG
* *
78570021 TGATAATGGTGGC-AATGTGTTCATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAA
1 TGATAATGGTAGCAAAT-TGTGCATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAA
* *** * ** * **
78570085 ATGTGATTT-AGACTCAAATTTGATTG
65 GTACAATTTGGGA-TTGAATTCGATCA
* * * * *
78570111 TGACAATGGTAGTAAATTGTTCAGTGTTTAAAAGTGTGATTGTGATTAGTTATATTGTTTAAAAG
1 TGATAATGGTAGCAAATTGTGCATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAG
78570176 TACAATTTGGGATTGAATTCGATCA
66 TACAATTTGGGATTGAATTCGATCA
* * * * * *
78570201 TGATAATGGTAGCGAATTGTGCATTATTTAAAGGTATGGA-TGCGAATAG-T-GATTG-------
1 TGATAATGGTAGCAAATTGTGCATTGTTTAAAAGTAT-GATTGTGATTAGTTATATTGTTTAAAA
*
78570256 GTACGATTTGGGATTGAATTCGATCA
65 GTACAATTTGGGATTGAATTCGATCA
* * * * * *
78570282 CGATAATGGTAGCAAATTATGCATTGTTTGAAGGCATGGTTGTGATTAGTTATATTGTTTAAAAG
1 TGATAATGGTAGCAAATTGTGCATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAG
78570347 TA-AGATTTGGGATTGAAT
66 TACA-ATTTGGGATTGAAT
78570365 GTAGCTGTCT
Statistics
Matches: 202, Mismatches: 38, Indels: 28
0.75 0.14 0.10
Matches are distributed among these distances:
80 1 0.00
81 63 0.31
82 1 0.00
83 4 0.02
88 4 0.02
89 1 0.00
90 121 0.60
91 7 0.03
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (90 bp):
TGATAATGGTAGCAAATTGTGCATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAG
TACAATTTGGGATTGAATTCGATCA
Found at i:78572044 original size:25 final size:25
Alignment explanation
Indices: 78572010--78572060 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
78572000 AGGGGATAAG
78572010 TTAGTACACTTTTTCACTTAAATGC
1 TTAGTACACTTTTTCACTTAAATGC
*
78572035 TTAGTACACTTTTTCGCTTAAATGC
1 TTAGTACACTTTTTCACTTAAATGC
78572060 T
1 T
78572061 CTTTTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (25 bp):
TTAGTACACTTTTTCACTTAAATGC
Found at i:78573705 original size:17 final size:16
Alignment explanation
Indices: 78573685--78573718 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
78573675 TTTTCAGGAC
78573685 TTTTTTATAATATTTTA
1 TTTTTTATAAT-TTTTA
*
78573702 TTTTTTTTAATTTTTA
1 TTTTTTATAATTTTTA
78573718 T
1 T
78573719 GACCTTTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTATAATTTTTA
Found at i:78575876 original size:37 final size:37
Alignment explanation
Indices: 78575830--78575908 Score: 106
Period size: 37 Copynumber: 2.2 Consensus size: 37
78575820 GGTCTTCATG
*
78575830 ATTTA-AACTTACCTTCTTCTTTACGAGTAAAATTTA
1 ATTTACAACTTACCTTCTTATTTACGAGTAAAATTTA
* * * *
78575866 CTTTACAACTTACGTTCTTATTTATGAGTACAATTTA
1 ATTTACAACTTACCTTCTTATTTACGAGTAAAATTTA
78575903 ATTTAC
1 ATTTAC
78575909 CACTACACTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 4 0.11
37 32 0.89
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.46
Consensus pattern (37 bp):
ATTTACAACTTACCTTCTTATTTACGAGTAAAATTTA
Found at i:78579798 original size:68 final size:68
Alignment explanation
Indices: 78579671--78579804 Score: 171
Period size: 68 Copynumber: 2.0 Consensus size: 68
78579661 TATTGAAGTA
* * * ** * * *
78579671 AATTAGTGCCAACACACATCATAACAGGTATTATATCAATGATTTTAACTCAGACAATTTTTAAA
1 AATTACTGCCAACACACAGCACAACACCTATTATATCAATGATTTCAACTCAAACAATTTCTAAA
78579736 AAT
66 AAT
*
78579739 AATTACTGCCAACACACAGCACAACACCTATTATATCAATGA-TTCAAGCTCAAATAATTTCTAA
1 AATTACTGCCAACACACAGCACAACACCTATTATATCAATGATTTCAA-CTCAAACAATTTCTAA
78579803 AA
65 AA
78579805 GAAAATAACC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 4 0.07
68 52 0.93
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.29
Consensus pattern (68 bp):
AATTACTGCCAACACACAGCACAACACCTATTATATCAATGATTTCAACTCAAACAATTTCTAAA
AAT
Found at i:78580685 original size:24 final size:25
Alignment explanation
Indices: 78580652--78580700 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
78580642 AAATTCAAAA
*
78580652 TATTTATAAAAATTTTA-AAATTTT
1 TATTTATAAAAAATTTATAAATTTT
*
78580676 TATTTTTAAAAAATTTATAAATTTT
1 TATTTATAAAAAATTTATAAATTTT
78580701 AAAAAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTATAAAAAATTTATAAATTTT
Found at i:78580690 original size:17 final size:18
Alignment explanation
Indices: 78580621--78580706 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 18
78580611 AATAAATTTC
*
78580621 AAATTTTGAAAATAATTTTT
1 AAATTTT-AAAA-AATTTAT
* * *
78580641 AAAATTCAAAATATTTAT
1 AAATTTTAAAAAATTTAT
78580659 AAAAATTTT--AAAATTT-T
1 --AAATTTTAAAAAATTTAT
* *
78580676 TATTTTTAAAAAATTTAT
1 AAATTTTAAAAAATTTAT
78580694 AAATTTTAAAAAA
1 AAATTTTAAAAAA
78580707 ATCTAAAAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 12
0.68 0.15 0.16
Matches are distributed among these distances:
15 5 0.10
17 8 0.16
18 23 0.46
19 4 0.08
20 10 0.20
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (18 bp):
AAATTTTAAAAAATTTAT
Found at i:78586161 original size:25 final size:25
Alignment explanation
Indices: 78586127--78586176 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78586117 CCTTTCCATC
78586127 ATTCTTAGGGGTATTTATAGGCAGG
1 ATTCTTAGGGGTATTTATAGGCAGG
78586152 ATTCTTAGGGGTATTTATAGGCAGG
1 ATTCTTAGGGGTATTTATAGGCAGG
78586177 GTTCCGTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (25 bp):
ATTCTTAGGGGTATTTATAGGCAGG
Found at i:78590838 original size:24 final size:24
Alignment explanation
Indices: 78590811--78590858 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
78590801 TATTCAATCG
78590811 AACTTCAATATATTTTTGTATTAA
1 AACTTCAATATATTTTTGTATTAA
78590835 AACTTCAATATATTTTTGTATTAA
1 AACTTCAATATATTTTTGTATTAA
78590859 CTCCATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (24 bp):
AACTTCAATATATTTTTGTATTAA
Found at i:78590870 original size:23 final size:23
Alignment explanation
Indices: 78590811--78590871 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
78590801 TATTCAATCG
* *
78590811 AACTTCAATATATTTTTGTATTAA
1 AACTCCAAAATATTTTTGTATT-A
* *
78590835 AACTTCAATATATTTTTGTATT-
1 AACTCCAAAATATTTTTGTATTA
78590857 AACTCCATAAATATT
1 AACTCCA-AAATATT
78590872 CCTATTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 6 0.18
23 6 0.18
24 22 0.65
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.48
Consensus pattern (23 bp):
AACTCCAAAATATTTTTGTATTA
Found at i:78592668 original size:22 final size:21
Alignment explanation
Indices: 78592627--78592669 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
78592617 TTTATTCATT
*
78592627 TAATTTTAAAAAATTATAAAA
1 TAATTTTAAAAAAATATAAAA
78592648 TAATTATTAAAAAACAT-TAAAA
1 TAATT-TTAAAAAA-ATATAAAA
78592670 ATTTTCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 13 0.68
23 1 0.05
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
TAATTTTAAAAAAATATAAAA
Found at i:78593855 original size:18 final size:18
Alignment explanation
Indices: 78593817--78593857 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
78593807 ATTAGTCGAC
*
78593817 CGATTAACCGAATTCAGT
1 CGATTAACCGAATTAAGT
*
78593835 CGATTAACCGAATTAATT
1 CGATTAACCGAATTAAGT
78593853 CGATT
1 CGATT
78593858 TTACCTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (18 bp):
CGATTAACCGAATTAAGT
Found at i:78600359 original size:6 final size:6
Alignment explanation
Indices: 78600348--78600374 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
78600338 GAAAGGATTT
78600348 GGTTGA GGTTGA GGTTGA GGTTGA GGT
1 GGTTGA GGTTGA GGTTGA GGTTGA GGT
78600375 AGTTCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTTGA
Found at i:78602747 original size:12 final size:12
Alignment explanation
Indices: 78602732--78602771 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
78602722 TTTCACTTTG
78602732 TTTTTGTTTTT-
1 TTTTTGTTTTTA
*
78602743 CTTTTGTTTTTA
1 TTTTTGTTTTTA
*
78602755 TTTTTATTTTTA
1 TTTTTGTTTTTA
78602767 TTTTT
1 TTTTT
78602772 CATGTTCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.07, C:0.03, G:0.05, T:0.85
Consensus pattern (12 bp):
TTTTTGTTTTTA
Found at i:78602770 original size:17 final size:17
Alignment explanation
Indices: 78602717--78602764 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
78602707 TTTGAGTCCA
* *
78602717 TTTATTTTCACTTTGTT
1 TTTATTTTTATTTTGTT
* *
78602734 TTTGTTTTTCTTTTGTT
1 TTTATTTTTATTTTGTT
78602751 TTTATTTTTATTTT
1 TTTATTTTTATTTT
78602765 TATTTTTCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.08, C:0.06, G:0.06, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTGTT
Found at i:78604309 original size:26 final size:26
Alignment explanation
Indices: 78604280--78604340 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
78604270 AGAGATTTGA
78604280 TTTTCATGTAAGCCTATGGTAATAAC
1 TTTTCATGTAAGCCTATGGTAATAAC
78604306 TTTTCATGTAAGCCTATGGTAATAAC
1 TTTTCATGTAAGCCTATGGTAATAAC
78604332 TTTTCATGT
1 TTTTCATGT
78604341 TTGACTATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.43
Consensus pattern (26 bp):
TTTTCATGTAAGCCTATGGTAATAAC
Found at i:78606510 original size:41 final size:39
Alignment explanation
Indices: 78606465--78606545 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 39
78606455 GCTAGGTTTA
*
78606465 AAACCCAAATCCAATCACCACCACAAAGCATGCGGGACTTT
1 AAACCCAAATACAAT-ACCACCACAAAGC-TGCGGGACTTT
* * * *
78606506 AAACCTAGATATAATACCAGCACAAAGCTGCGGGACTTT
1 AAACCCAAATACAATACCACCACAAAGCTGCGGGACTTT
78606545 A
1 A
78606546 GCCCGGATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 12 0.34
40 12 0.34
41 11 0.31
ACGTcount: A:0.40, C:0.28, G:0.15, T:0.17
Consensus pattern (39 bp):
AAACCCAAATACAATACCACCACAAAGCTGCGGGACTTT
Found at i:78606541 original size:39 final size:39
Alignment explanation
Indices: 78606481--78606683 Score: 139
Period size: 39 Copynumber: 5.2 Consensus size: 39
78606471 AAATCCAATC
* *
78606481 ACCACCACAAAGCATGCGGGACTTTAAACCTAGATATAAT
1 ACCAGCACAAAGC-TGCGGGACTTTAAACCCAGATATAAT
* *
78606521 ACCAGCACAAAGCTGCGGGACTTT-AGCCCGGATATAAT
1 ACCAGCACAAAGCTGCGGGACTTTAAACCCAGATATAAT
* * * * *
78606559 ACCAGCACAAAACCTGCGGGAATTT-AGCCCGGATATAAC
1 ACCAGCAC-AAAGCTGCGGGACTTTAAACCCAGATATAAT
* * * * *
78606598 ACCAGCACGAATGCCTTCGGGGC-TT-AACCCGGATATAAC
1 ACCAGCAC-AAAG-CTGCGGGACTTTAAACCCAGATATAAT
* * * * *
78606637 ACCAGCACGAATGCCTTCGGGAC-TT-AGCCCGGATATAAC
1 ACCAGCAC-AAAG-CTGCGGGACTTTAAACCCAGATATAAT
78606676 ACCAGCAC
1 ACCAGCAC
78606684 GAATGCCTTC
Statistics
Matches: 145, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 19 0.13
39 108 0.74
40 18 0.12
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.17
Consensus pattern (39 bp):
ACCAGCACAAAGCTGCGGGACTTTAAACCCAGATATAAT
Found at i:78606713 original size:39 final size:39
Alignment explanation
Indices: 78606513--78606706 Score: 250
Period size: 39 Copynumber: 5.0 Consensus size: 39
78606503 TTTAAACCTA
* * *
78606513 GATATAATACCAGCAC-AAAG-CTGCGGGACTTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCG
* ** * *
78606551 GATATAATACCAGCAC-AAAACCTGCGGGAATTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGG-ACTTAGCCCG
* *
78606590 GATATAACACCAGCACGAATGCCTTCGGGGCTTAACCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
78606629 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
*
78606668 GATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
78606707 AGTATAATTC
Statistics
Matches: 141, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 19 0.13
39 112 0.79
40 10 0.07
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
Found at i:78607239 original size:110 final size:110
Alignment explanation
Indices: 78607046--78607265 Score: 413
Period size: 110 Copynumber: 2.0 Consensus size: 110
78607036 TGTGGATAGG
* *
78607046 CTACTCGATTGCTTTCTCATTTCCCCTATCTGATTTAGTTCTTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCATTTCCCCTATCTGATTTAGTTCCTCTTTGCTCCTGAGCTTTAAATT
78607111 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
*
78607156 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCCTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCATTTCCCCTATCTGATTTAGTTCCTCTTTGCTCCTGAGCTTTAAATT
78607221 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
78607266 AATAGTCACA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.46
Consensus pattern (110 bp):
CTACTCGATTGCTTTCTCATTTCCCCTATCTGATTTAGTTCCTCTTTGCTCCTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:78613387 original size:39 final size:40
Alignment explanation
Indices: 78613199--78613416 Score: 284
Period size: 39 Copynumber: 5.5 Consensus size: 40
78613189 ACAAAGCATG
* * * *
78613199 CGGGACTTTAAGCCCGGATATAATACCAGTAC-AAAGCCTG
1 CGGGACTTT-AGCCCGGATATAACACCAGCACGAATGCCTT
* * * *
78613239 CGGGACTTTAGCCCGAATATAATACCAGCAC-AAAGCCTG
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
78613278 CGGGACTTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
78613318 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
78613357 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
** *
78613396 CAAGAC-TTAGCTCGGATATAA
1 CGGGACTTTAGCCCGGATATAA
78613417 TTCTCCATTA
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 145 0.87
40 21 0.13
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.19
Consensus pattern (40 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:78616487 original size:46 final size:46
Alignment explanation
Indices: 78616420--78616594 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
78616410 TGTAACCCGC
78616420 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
78616466 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * ** * *
78616516 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
78616559 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
78616595 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:78616540 original size:93 final size:93
Alignment explanation
Indices: 78616428--78616598 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
78616418 GCCCATAAGT
** *
78616428 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
78616493 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
78616521 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
78616586 CGAGTTCGGATGC
66 CGAGCTCGGATGC
78616599 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:78634174 original size:22 final size:22
Alignment explanation
Indices: 78634117--78634174 Score: 52
Period size: 22 Copynumber: 2.7 Consensus size: 22
78634107 TCAAATCAAT
78634117 ATTTCT-T-GAATTTTAACAAA
1 ATTTCTCTCGAATTTTAACAAA
* *
78634137 ATTT-TCAAC-AATTTTTAAGAAA
1 ATTTCTC-TCGAA-TTTTAACAAA
78634159 ATTTCTCTCGAATTTT
1 ATTTCTCTCGAATTTT
78634175 TTGAACCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 10
0.69 0.07 0.24
Matches are distributed among these distances:
19 1 0.03
20 4 0.14
21 2 0.07
22 18 0.62
23 4 0.14
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (22 bp):
ATTTCTCTCGAATTTTAACAAA
Found at i:78634995 original size:28 final size:29
Alignment explanation
Indices: 78634964--78635024 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
78634954 CTCTACGTAA
*
78634964 TTTTATATATTTTTAAAATACTT-TATAT
1 TTTTATATACTTTTAAAATACTTATATAT
* * * *
78634992 TTTTATGTCCTTTTATAATATTTATATAT
1 TTTTATATACTTTTAAAATACTTATATAT
78635021 TTTT
1 TTTT
78635025 TAAAGTTCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTATATACTTTTAAAATACTTATATAT
Found at i:78636639 original size:17 final size:17
Alignment explanation
Indices: 78636614--78636646 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78636604 AATATAAAAT
78636614 GTATACAAATTATTATAA
1 GTATACAAATT-TTATAA
78636632 GTAT-CAAATTTTATA
1 GTATACAAATTTTATA
78636647 TTAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (17 bp):
GTATACAAATTTTATAA
Found at i:78636964 original size:16 final size:18
Alignment explanation
Indices: 78636943--78636982 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
78636933 AATCAATCTC
*
78636943 TATATACAT-TAT-CATG
1 TATATACATATATACATA
78636959 TATATACATATATACATA
1 TATATACATATATACATA
78636977 TATATA
1 TATATA
78636983 TATACATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
17 3 0.14
18 9 0.43
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATACATATATACATA
Found at i:78636972 original size:8 final size:8
Alignment explanation
Indices: 78636959--78636990 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
78636949 CATTATCATG
78636959 TATATACA
1 TATATACA
78636967 TATATACA
1 TATATACA
78636975 TATAT--A
1 TATATACA
78636981 TATATACA
1 TATATACA
78636989 TA
1 TA
78636991 CTTGAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.27
8 16 0.73
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (8 bp):
TATATACA
Found at i:78636977 original size:14 final size:14
Alignment explanation
Indices: 78636960--78636990 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
78636950 ATTATCATGT
78636960 ATATACATATATAC
1 ATATACATATATAC
*
78636974 ATATATATATATAC
1 ATATACATATATAC
78636988 ATA
1 ATA
78636991 CTTGAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATACATATATAC
Found at i:78638952 original size:22 final size:22
Alignment explanation
Indices: 78638927--78638973 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
78638917 ATTAATAATA
* *
78638927 AAACAAGAGTTGTACAATATCT
1 AAACAAAAGTTCTACAATATCT
78638949 AAACAAAAGTTCTACAATATCT
1 AAACAAAAGTTCTACAATATCT
78638971 AAA
1 AAA
78638974 TAATAACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.15, G:0.09, T:0.26
Consensus pattern (22 bp):
AAACAAAAGTTCTACAATATCT
Found at i:78641970 original size:39 final size:39
Alignment explanation
Indices: 78641927--78642006 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
78641917 GATCTTAAAA
*
78641927 GATATGATTTTATAATCTTAGAGATCTTAGATATGATAT
1 GATATGATATTATAATCTTAGAGATCTTAGATATGATAT
* *
78641966 GATATTATATTATAGTCTTAGAGATCTTAGATATGATAT
1 GATATGATATTATAATCTTAGAGATCTTAGATATGATAT
78642005 GA
1 GA
78642007 AATCTTATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.42
Consensus pattern (39 bp):
GATATGATATTATAATCTTAGAGATCTTAGATATGATAT
Found at i:78642024 original size:51 final size:51
Alignment explanation
Indices: 78641966--78642092 Score: 191
Period size: 51 Copynumber: 2.5 Consensus size: 51
78641956 GATATGATAT
* * * *
78641966 GATATTATATTATAGTCTTAGAGATCTTAGATATGATATGAAATCTTATAA
1 GATATTATTTTATATTCTTAGAGATCTTAGATATGATACGAAATCTTAGAA
* *
78642017 GATATTATTTTATATTCTTAGAAATCTTAGATATGATACGTAATCTTAGAA
1 GATATTATTTTATATTCTTAGAGATCTTAGATATGATACGAAATCTTAGAA
*
78642068 GATATGATTTTATATTCTTAGAGAT
1 GATATTATTTTATATTCTTAGAGAT
78642093 TTGATTTGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.43
Consensus pattern (51 bp):
GATATTATTTTATATTCTTAGAGATCTTAGATATGATACGAAATCTTAGAA
Found at i:78644913 original size:51 final size:51
Alignment explanation
Indices: 78644849--78645074 Score: 278
Period size: 51 Copynumber: 4.7 Consensus size: 51
78644839 TGGAAATATG
*
78644849 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
* *
78644900 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATAT-G-
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
* *
78644949 A---TAT----TAT-A--TTATAATCTTAAAGATCTTAGATATGATATGAA
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
* * *
78644990 ATCTTATAAGATATTATTTTATATTCTTAGAGATCTTAGATATGATATGTA
1 ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
* *
78645041 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTATAAGATATGATTTTATAATCTTAGAGAT
78645075 TTGATTTGTA
Statistics
Matches: 153, Mismatches: 10, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
39 29 0.19
41 2 0.01
42 3 0.02
44 3 0.02
46 3 0.02
48 3 0.02
49 2 0.01
50 1 0.01
51 107 0.70
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (51 bp):
ATCTTATAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
Found at i:78644955 original size:39 final size:39
Alignment explanation
Indices: 78644909--78644988 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
78644899 AATCTTATAA
*
78644909 GATATTATATTATAATCTTAGAGATCTTAGATATGATAT
1 GATATTATATTATAATCTTAAAGATCTTAGATATGATAT
78644948 GATATTATATTATAATCTTAAAGATCTTAGATATGATAT
1 GATATTATATTATAATCTTAAAGATCTTAGATATGATAT
78644987 GA
1 GA
78644989 AATCTTATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (39 bp):
GATATTATATTATAATCTTAAAGATCTTAGATATGATAT
Found at i:78644986 original size:29 final size:29
Alignment explanation
Indices: 78644857--78644947 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 29
78644847 TGATCTTAAA
*
78644857 AGATATGATTTTATAATCTTAGAGATCTT
1 AGATATGATATTATAATCTTAGAGATCTT
** *
78644886 AGATATGATA-TGGAATCTT----A--TA
1 AGATATGATATTATAATCTTAGAGATCTT
*
78644908 AGATATTATATTATAATCTTAGAGATCTT
1 AGATATGATATTATAATCTTAGAGATCTT
78644937 AGATATGATAT
1 AGATATGATAT
78644948 GATATTATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
22 10 0.22
23 7 0.15
24 1 0.02
27 1 0.02
28 7 0.15
29 20 0.43
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.42
Consensus pattern (29 bp):
AGATATGATATTATAATCTTAGAGATCTT
Found at i:78645002 original size:90 final size:90
Alignment explanation
Indices: 78644858--78645038 Score: 308
Period size: 90 Copynumber: 2.0 Consensus size: 90
78644848 GATCTTAAAA
* * *
78644858 GATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGAATCTTATAAGATATTATATTATA
1 GATATGATATTATAATCTTAAAGATCTTAGATATGATATGAAATCTTATAAGATATTATATTATA
78644923 ATCTTAGAGATCTTAGATATGATAT
66 ATCTTAGAGATCTTAGATATGATAT
* *
78644948 GATATTATATTATAATCTTAAAGATCTTAGATATGATATGAAATCTTATAAGATATTATTTTATA
1 GATATGATATTATAATCTTAAAGATCTTAGATATGATATGAAATCTTATAAGATATTATATTATA
*
78645013 TTCTTAGAGATCTTAGATATGATAT
66 ATCTTAGAGATCTTAGATATGATAT
78645038 G
1 G
78645039 TAATCTTAGA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (90 bp):
GATATGATATTATAATCTTAAAGATCTTAGATATGATATGAAATCTTATAAGATATTATATTATA
ATCTTAGAGATCTTAGATATGATAT
Found at i:78645079 original size:22 final size:22
Alignment explanation
Indices: 78645005--78645081 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
78644995 ATAAGATATT
78645005 ATTTTATATTCTTAGAGATCTTAG
1 ATTTTATATTCTTAGAGAT-TT-G
* * *
78645029 ATATGATATGTAATCTTAGAAGATATG
1 AT-T--T-TATATTCTTAG-AGATTTG
78645056 ATTTTATATTCTTAGAGATTTG
1 ATTTTATATTCTTAGAGATTTG
78645078 ATTT
1 ATTT
78645082 GTAGATACCC
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
22 10 0.24
23 9 0.21
24 3 0.07
25 1 0.02
26 1 0.02
27 4 0.10
28 10 0.24
29 4 0.10
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.48
Consensus pattern (22 bp):
ATTTTATATTCTTAGAGATTTG
Found at i:78646011 original size:16 final size:16
Alignment explanation
Indices: 78645971--78646014 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
78645961 TTTCAATTAA
78645971 AATTTTATTTTCTTAT
1 AATTTTATTTTCTTAT
* *
78645987 AAATATATTTT-TATAT
1 AATTTTATTTTCT-TAT
78646003 AATTTTATTTTC
1 AATTTTATTTTC
78646015 CACCCACGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (16 bp):
AATTTTATTTTCTTAT
Found at i:78649399 original size:12 final size:12
Alignment explanation
Indices: 78649382--78649406 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78649372 TTTTGGATGA
78649382 ATTTGATTGAAT
1 ATTTGATTGAAT
78649394 ATTTGATTGAAT
1 ATTTGATTGAAT
78649406 A
1 A
78649407 AGTTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTTGATTGAAT
Found at i:78649857 original size:16 final size:16
Alignment explanation
Indices: 78649836--78649870 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
78649826 AAATCAGACT
78649836 TTGAGTCTAGCAGGCC
1 TTGAGTCTAGCAGGCC
78649852 TTGAGTCTAGCAGGCC
1 TTGAGTCTAGCAGGCC
78649868 TTG
1 TTG
78649871 CGCCGGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.23, G:0.31, T:0.29
Consensus pattern (16 bp):
TTGAGTCTAGCAGGCC
Found at i:78658183 original size:20 final size:20
Alignment explanation
Indices: 78658146--78658184 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
78658136 TTACAATAAT
78658146 AATTATGTTAAAATTTATTA
1 AATTATGTTAAAATTTATTA
*
78658166 AATTA-GTTTAAATATTATT
1 AATTATGTTAAAAT-TTATT
78658185 TTTTATGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
AATTATGTTAAAATTTATTA
Found at i:78661502 original size:21 final size:19
Alignment explanation
Indices: 78661478--78661516 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 19
78661468 GCGATGAAGA
78661478 ATATTTATAGAAAAAAAAAGC
1 ATATTT-TA-AAAAAAAAAGC
78661499 ATATTTTAAAAAAAAAAG
1 ATATTTTAAAAAAAAAAG
78661517 TTGTGATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 2 0.11
21 6 0.33
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.26
Consensus pattern (19 bp):
ATATTTTAAAAAAAAAAGC
Found at i:78665268 original size:30 final size:30
Alignment explanation
Indices: 78665234--78665290 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
78665224 AATATTACAT
*
78665234 TATCTTATTTAATTCATTTGATTAAAATAC
1 TATCTTATTTAATTCATTTAATTAAAATAC
78665264 TATCTTATTTAATTCATTTAATTAAAA
1 TATCTTATTTAATTCATTTAATTAAAA
78665291 CGTAAGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.51
Consensus pattern (30 bp):
TATCTTATTTAATTCATTTAATTAAAATAC
Found at i:78673356 original size:21 final size:21
Alignment explanation
Indices: 78673330--78673370 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
78673320 ATCTGCTCAA
* *
78673330 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
78673351 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
78673371 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:78689315 original size:17 final size:18
Alignment explanation
Indices: 78689293--78689326 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
78689283 TACTTGTGGG
78689293 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
78689310 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
78689327 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:78689594 original size:17 final size:19
Alignment explanation
Indices: 78689572--78689606 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
78689562 TCAAAAATTA
78689572 AACATA-AAAT-AATATTT
1 AACATAGAAATAAATATTT
78689589 AACATAGAAATAAATATT
1 AACATAGAAATAAATATT
78689607 ATTTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (19 bp):
AACATAGAAATAAATATTT
Found at i:78689711 original size:43 final size:43
Alignment explanation
Indices: 78689646--78689763 Score: 184
Period size: 43 Copynumber: 2.7 Consensus size: 43
78689636 GATCATTATT
* *
78689646 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCAT-GATC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAG-TC
*
78689689 TTTAGCGACGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
*
78689732 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAA
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAA
78689764 TTTTTGCGGC
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
43 68 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATAGTC
Found at i:78690980 original size:5 final size:5
Alignment explanation
Indices: 78690970--78691002 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
78690960 GTTATTTTAC
78690970 AAAA- AAAA- AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
78691003 GGCCAGGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.29
5 20 0.71
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:78692916 original size:17 final size:17
Alignment explanation
Indices: 78692880--78692933 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
78692870 AATGAGCAGA
*
78692880 TCACATAAATTATCAAT
1 TCACATAAAATATCAAT
**
78692897 TCACATAAAATATCTGT
1 TCACATAAAATATCAAT
* * *
78692914 TCATATGAAATAACAAT
1 TCACATAAAATATCAAT
78692931 TCA
1 TCA
78692934 TACAATTTAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (17 bp):
TCACATAAAATATCAAT
Found at i:78693636 original size:18 final size:18
Alignment explanation
Indices: 78693613--78693647 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78693603 TCACAATATA
78693613 CAGTTTGACAAATTAATG
1 CAGTTTGACAAATTAATG
* *
78693631 CAGTTTGCCATATTAAT
1 CAGTTTGACAAATTAAT
78693648 ACAATACACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (18 bp):
CAGTTTGACAAATTAATG
Found at i:78695404 original size:21 final size:21
Alignment explanation
Indices: 78695374--78695427 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
78695364 ATTAAGGGGA
*
78695374 AATTTCCTCTTAAAAATTTAC
1 AATTTTCTCTTAAAAATTTAC
78695395 AATTTTCTCTTAAAAATTTAC
1 AATTTTCTCTTAAAAATTTAC
*
78695416 AATTTTATCTTA
1 AATTTTCTCTTA
78695428 TTTTTCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (21 bp):
AATTTTCTCTTAAAAATTTAC
Found at i:78698021 original size:30 final size:27
Alignment explanation
Indices: 78697987--78698045 Score: 73
Period size: 30 Copynumber: 2.1 Consensus size: 27
78697977 ATGTAATATA
78697987 AACATATAAGAAAAATAATAGATATAAAGT
1 AACATATAA-AAAAAT-ATAGATAT-AAGT
* *
78698017 AACATATAAAACAATATATATATAAGT
1 AACATATAAAAAAATATAGATATAAGT
78698044 AA
1 AA
78698046 TAAATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 6 0.22
28 7 0.26
29 5 0.19
30 9 0.33
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.25
Consensus pattern (27 bp):
AACATATAAAAAAATATAGATATAAGT
Found at i:78698133 original size:17 final size:18
Alignment explanation
Indices: 78698094--78698136 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
78698084 TAAGGAAAAT
*
78698094 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
78698113 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
78698130 AATAATA
1 AATAATA
78698137 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:78698133 original size:20 final size:19
Alignment explanation
Indices: 78698072--78698226 Score: 65
Period size: 20 Copynumber: 7.8 Consensus size: 19
78698062 GAAAAGATGT
**
78698072 AAAATAATAAT-T-TAAGG
1 AAAATAATAATATATAATA
78698089 AAAATAAT-ATATATAATA
1 AAAATAATAATATATAATA
*
78698107 AGTAATAATAATATATAATTA
1 A-AAATAATAATATATAA-TA
*
78698128 AAAATAATACTCATAATAA-A
1 AAAATAATAAT-AT-ATAATA
* *
78698148 ACAATTTTATAATATATAATA
1 A-AA-ATAATAATATATAATA
*
78698169 TAAAAGTAA-AAT-TAAAATAA
1 -AAAA-TAATAATATATAAT-A
78698189 ACAAATAATACA-ATATATATA
1 A-AAATAATA-ATATATA-ATA
78698210 ATAATATAATAA-ATATA
1 A-AA-ATAATAATATATA
78698227 GGACTAAATT
Statistics
Matches: 106, Mismatches: 13, Indels: 34
0.69 0.08 0.22
Matches are distributed among these distances:
16 2 0.02
17 9 0.08
18 4 0.04
19 15 0.14
20 30 0.28
21 28 0.26
22 18 0.17
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATAATAATATATAATA
Found at i:78698214 original size:17 final size:17
Alignment explanation
Indices: 78698192--78698226 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
78698182 AAAATAAACA
*
78698192 AATAATACAATATATAT
1 AATAATACAATAAATAT
*
78698209 AATAATATAATAAATAT
1 AATAATACAATAAATAT
78698226 A
1 A
78698227 GGACTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAATACAATAAATAT
Found at i:78709656 original size:14 final size:14
Alignment explanation
Indices: 78709633--78709677 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 14
78709623 ATTTATACTT
78709633 AAACTTAATTAATC
1 AAACTTAATTAATC
* *
78709647 AAATTTAATTAATTA
1 AAACTTAATTAA-TC
78709662 AAACTTAATTAA-C
1 AAACTTAATTAATC
78709675 AAA
1 AAA
78709678 AAATTAAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 3 0.12
14 11 0.42
15 12 0.46
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACTTAATTAATC
Found at i:78709678 original size:14 final size:15
Alignment explanation
Indices: 78709633--78709678 Score: 60
Period size: 14 Copynumber: 3.2 Consensus size: 15
78709623 ATTTATACTT
78709633 AAACTTAATTAATC-
1 AAACTTAATTAATCA
* *
78709647 AAATTTAATTAATTA
1 AAACTTAATTAATCA
78709662 AAACTTAATTAA-CA
1 AAACTTAATTAATCA
78709676 AAA
1 AAA
78709679 AATTAAGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (15 bp):
AAACTTAATTAATCA
Found at i:78709682 original size:22 final size:22
Alignment explanation
Indices: 78709657--78709701 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
78709647 AAATTTAATT
78709657 AATTAAAACTTAATTA-ACAAAA
1 AATT-AAACTTAATTAGACAAAA
*
78709679 AATTAAGCTTAATTAGACAAAA
1 AATTAAACTTAATTAGACAAAA
78709701 A
1 A
78709702 TTAGTGGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.27
Consensus pattern (22 bp):
AATTAAACTTAATTAGACAAAA
Found at i:78711603 original size:22 final size:22
Alignment explanation
Indices: 78711558--78711604 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
78711548 AAAGGCAATC
*
78711558 TACAAATCAAATATCTTAATAT
1 TACAAATCAAATATCTTAAGAT
*
78711580 TACAAATCAAATCT-TCTAAGAT
1 TACAAATCAAATATCT-TAAGAT
78711602 TAC
1 TAC
78711605 GGATCTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (22 bp):
TACAAATCAAATATCTTAAGAT
Found at i:78721656 original size:98 final size:98
Alignment explanation
Indices: 78721484--78721662 Score: 286
Period size: 98 Copynumber: 1.8 Consensus size: 98
78721474 GACTAATATG
* * * *
78721484 TGGAAATAATAAGTTGACGTGGTATTTCACATATGATAATATGTTTGTCACATTAAATTTTGGAA
1 TGGAAACAATAAATTGACATGGTATTTCACACATGATAATATGTTTGTCACATTAAATTTTGGAA
*
78721549 ATAGTTAAACTTAATAAACTTAATATCCAATTT
66 ATAGCTAAACTTAATAAACTTAATATCCAATTT
* **
78721582 TGGAAACAATAAATTGACATGGTATTTCACACGTGATAATATGTTTGTTGCATTAAATTTTGGAA
1 TGGAAACAATAAATTGACATGGTATTTCACACATGATAATATGTTTGTCACATTAAATTTTGGAA
78721647 ATAGCTAAACTTAATA
66 ATAGCTAAACTTAATA
78721663 TTCAATTTGG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 73 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (98 bp):
TGGAAACAATAAATTGACATGGTATTTCACACATGATAATATGTTTGTCACATTAAATTTTGGAA
ATAGCTAAACTTAATAAACTTAATATCCAATTT
Found at i:78729541 original size:5 final size:5
Alignment explanation
Indices: 78729519--78729556 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
78729509 ATTATAAATA
*
78729519 ATATT ATTTT AGTATT ATATT ATATT ATATT ATATT AT
1 ATATT ATATT A-TATT ATATT ATATT ATATT ATATT AT
78729557 TTAAATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (5 bp):
ATATT
Found at i:78731087 original size:25 final size:25
Alignment explanation
Indices: 78731031--78731080 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78731021 GGACTAAATC
78731031 AAGAACTTTGAAAATATTTGGACAA
1 AAGAACTTTGAAAATATTTGGACAA
78731056 AAGAACTTTGAAAATATTTGGACAA
1 AAGAACTTTGAAAATATTTGGACAA
78731081 CTTAACTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (25 bp):
AAGAACTTTGAAAATATTTGGACAA
Found at i:78732579 original size:38 final size:38
Alignment explanation
Indices: 78732520--78732722 Score: 122
Period size: 38 Copynumber: 4.9 Consensus size: 38
78732510 TTTTAAATTA
* * *
78732520 ACATGTATAACTGTGGCATATCTACTTAGCACCATGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
78732558 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
78732599 GAATCAATATATGTAACTGTGGC--ATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
78732641 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
* *
78732689 ACACGTATAACCGTGGTATATCCACTTAGCACCA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCA
78732723 AGTTTTTTCA
Statistics
Matches: 131, Mismatches: 15, Indels: 38
0.71 0.08 0.21
Matches are distributed among these distances:
38 59 0.45
39 2 0.02
40 1 0.01
41 1 0.01
42 3 0.02
43 1 0.01
44 4 0.03
45 20 0.15
46 9 0.07
47 8 0.06
48 23 0.18
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:78732686 original size:48 final size:47
Alignment explanation
Indices: 78732560--78732696 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 47
78732550 ACCATGTTAC
* *
78732560 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAA-CGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
78732607 ATATGTAACTGTGG--CATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAAC-GTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
78732653 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAA-CGTGGTATATCCACTTAGCACCACGTTACATGTAT
78732697 AACCGTGGTA
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
45 20 0.26
46 21 0.27
47 11 0.14
48 26 0.33
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
ATGTGTAACGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:78735796 original size:38 final size:39
Alignment explanation
Indices: 78735679--78735817 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
78735669 GCTCTGATGA
**
78735679 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
* *
78735718 GCTTCAGTTAGCCTTCGGGCTTTTGTTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
* *
78735757 GCTTCAGTTATCCTTCGGG-TTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
* *
78735795 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
78735818 AAATCACGAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 32 0.36
39 56 0.64
ACGTcount: A:0.13, C:0.24, G:0.23, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
Found at i:78736940 original size:24 final size:24
Alignment explanation
Indices: 78736913--78736964 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
78736903 ATGATTTAGT
78736913 TATGAGGTAAGTAT-ATGATGTTTG-
1 TATGAGGTAAG-ATGA-GATGTTTGA
*
78736937 TATGAGTTAAGATGAGATGTTTGA
1 TATGAGGTAAGATGAGATGTTTGA
78736961 TATG
1 TATG
78736965 GTATATCGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 10 0.40
24 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (24 bp):
TATGAGGTAAGATGAGATGTTTGA
Found at i:78742781 original size:47 final size:46
Alignment explanation
Indices: 78742719--78743078 Score: 188
Period size: 47 Copynumber: 7.6 Consensus size: 46
78742709 AGAACCAGTA
* *
78742719 TAAGACCATGTCTGGGACATGGAATCGGCATTGA-GACTAGGGCTAGTG
1 TAAGA-CATGTCTGGGACATGGCATCGGCATTGATGA-T-GAGCTAGTG
* *
78742767 TAAGACGTGTCTGGGACAT-GCATCAGCCACATT-ATGAT-AGCTAGTG
1 TAAGACATGTCTGGGACATGGCATC-G--GCATTGATGATGAGCTAGTG
* * *
78742813 TAAGACCATGTTTGGGACATGGCATCGGCGTAGA-GATGAATGCTAGTG
1 TAAGA-CATGTCTGGGACATGGCATCGGCATTGATGATG-A-GCTAGTG
* * *
78742861 TAAGACATGTCTGGGACAT-GCATCAGCCTCGATGATGATAGCTAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCATTGATGATG--AGCTAGTG
* * * *
78742908 TAAGACGTGTCTGGGACAT-GCATCGGC--T-AAGTTTCGTGCTAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCATTGATG-AT-GAGCTAGTG
* * * * * *
78742952 TAAGACATGTCTGGGATAT-ACATCAGCACATATACACGA-GAACTAGTG
1 TAAGACATGTCTGGGACATGGCATC-G-GCAT-T-GATGATGAGCTAGTG
* * * * * *
78743000 TAAGACCATGTCTGGGACATGGCATTGGCCTCGATGGA-GATAACCAGCG
1 TAAGA-CATGTCTGGGACATGGCATCGGCATTGAT-GATG--AGCTAGTG
*
78743049 TAAGACCATGTCTGGGACATGGCAGCGGCA
1 TAAGA-CATGTCTGGGACATGGCATCGGCA
78743079 ACGTAACCCA
Statistics
Matches: 245, Mismatches: 41, Indels: 51
0.73 0.12 0.15
Matches are distributed among these distances:
44 30 0.12
45 7 0.03
46 30 0.12
47 80 0.33
48 39 0.16
49 54 0.22
50 3 0.01
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGGCATCGGCATTGATGATGAGCTAGTG
Found at i:78742880 original size:94 final size:92
Alignment explanation
Indices: 78742719--78743024 Score: 359
Period size: 94 Copynumber: 3.3 Consensus size: 92
78742709 AGAACCAGTA
* * * *
78742719 TAAGACCATGTCTGGGACATGGAATCGGCATTGAGACTAGGGCTAGTGTAAGACGTGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGC-TAGAGA-TAGTGCTAGTGTAAGACATGTCTGGGAC
78742784 ATGCATCAGCCACATTATGATAGCTAGTG
64 ATGCATCAGCCACATTATGATAGCTAGTG
* *
78742813 TAAGACCATGTTTGGGACATGGCATCGGCGTAGAGATGAATGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGC-TAGAGAT-AGTGCTAGTGTAAGACATGTCTGGGAC
* *
78742878 ATGCATCAGCCTCGATGATGATAGCTAGTG
64 ATGCATCAGCCAC-ATTATGATAGCTAGTG
* * * *
78742908 TAAGA-CGTGTCTGGGACAT-GCATCGGCTA-AGTTTCGTGCTAGTGTAAGACATGTCTGGGATA
1 TAAGACCATGTCTGGGACATGGCATCGGCTAGAG-ATAGTGCTAGTGTAAGACATGTCTGGGACA
* * * *
78742970 TACATCAG-CACATATACACGAGAACTAGTG
65 TGCATCAGCCACAT-T--ATGATAGCTAGTG
78743000 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
78743025 TGGCCTCGAT
Statistics
Matches: 182, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 34 0.19
92 18 0.10
93 22 0.12
94 84 0.46
95 20 0.11
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (92 bp):
TAAGACCATGTCTGGGACATGGCATCGGCTAGAGATAGTGCTAGTGTAAGACATGTCTGGGACAT
GCATCAGCCACATTATGATAGCTAGTG
Found at i:78743031 original size:141 final size:143
Alignment explanation
Indices: 78742708--78743069 Score: 352
Period size: 141 Copynumber: 2.6 Consensus size: 143
78742698 TGGGTTATGT
* * * * * **
78742708 GAGAACCAGTATAAGACCATGTCTGGGACATGGAATCGGCATTGA-GACT-AGGGCTAGTGTAAG
1 GAGAACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGA-TGATAGCTAGTGTAAG
* *
78742771 ACGTGTCTGGGACATGCATCAGCCACATTATGATAGCTAGTGTAAGACCATGTTTGGGACATGGC
65 ACGTGTCTGGGACATGCATCAGCCACATTATGATAGCTAGTGTAAGACCATGTCTGGGACATGAC
* * * *
78742836 ATCGGCGTAGAGAT
130 ATCGACATAGACAC
* *
78742850 GA-ATGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATGATGATAGCTAGTGTAAG
1 GAGA-ACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGCTAGTGTAAG
* * *
78742912 ACGTGTCTGGGACATGCATCGGCTA-AGTT-TCG-T-GCTAGTGTAAGA-CATGTCTGGGATAT-
65 ACGTGTCTGGGACATGCATCAGCCACA-TTAT-GATAGCTAGTGTAAGACCATGTCTGGGACATG
*
78742971 ACATCAGCACATATACAC
128 ACATC-G-ACATAGACAC
* * * *
78742989 GAGAACTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGGA-GATAACCAGCGTAAG
1 GAGAACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-GATGATAGCTAGTGTAAG
*
78743053 ACCATGTCTGGGACATG
65 A-CGTGTCTGGGACATG
78743070 GCAGCGGCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 24
0.78 0.11 0.10
Matches are distributed among these distances:
137 4 0.02
138 13 0.07
139 30 0.16
140 28 0.15
141 80 0.44
142 27 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (143 bp):
GAGAACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGCTAGTGTAAGA
CGTGTCTGGGACATGCATCAGCCACATTATGATAGCTAGTGTAAGACCATGTCTGGGACATGACA
TCGACATAGACAC
Found at i:78743950 original size:55 final size:54
Alignment explanation
Indices: 78743835--78743951 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
78743825 CTTAAAATTT
* * * * *
78743835 TAAA-TCAGTATTGTCCACGGTTAGGCTACACGGGCGTGTGCCATAGCCGTGTC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACAAGGGCGTGTGCCATAGCCGTGCC
* * *
78743888 TATAAGTCAGTATTGCCCACGGGTAGGCCACAAGGGCGTGTGTCATGGCCTTGCCC
1 TA-AAGTCAGTATTGCCCACGGGTAGGCCACAAGGGCGTGTGCCATAGCCGTG-CC
78743944 TAAAGTCA
1 TAAAGTCA
78743952 ATGTCAGACA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 46 0.87
56 3 0.06
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (54 bp):
TAAAGTCAGTATTGCCCACGGGTAGGCCACAAGGGCGTGTGCCATAGCCGTGCC
Found at i:78746139 original size:109 final size:109
Alignment explanation
Indices: 78745948--78746167 Score: 431
Period size: 109 Copynumber: 2.0 Consensus size: 109
78745938 CATGCGGCTG
78745948 CTTCACTCTCTGACATCTCTGAGCGTCTCACACGATTCGAGCAGCAATGTTTTCAACGATTTGAT
1 CTTCACTCTCTGACATCTCTGAGCGTCTCACACGATTCGAGCAGCAATGTTTTCAACGATTTGAT
78746013 CACATTAATGCAACCTTACATCAGATTTGTGAGCACCTTCACAT
66 CACATTAATGCAACCTTACATCAGATTTGTGAGCACCTTCACAT
*
78746057 CTTCACTCTCTGACATCTCTGAGCGTCTCACACGATTCGAGTAGCAATGTTTTCAACGATTTGAT
1 CTTCACTCTCTGACATCTCTGAGCGTCTCACACGATTCGAGCAGCAATGTTTTCAACGATTTGAT
78746122 CACATTAATGCAACCTTACATCAGATTTGTGAGCACCTTCACAT
66 CACATTAATGCAACCTTACATCAGATTTGTGAGCACCTTCACAT
78746166 CT
1 CT
78746168 CATCGCCACG
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (109 bp):
CTTCACTCTCTGACATCTCTGAGCGTCTCACACGATTCGAGCAGCAATGTTTTCAACGATTTGAT
CACATTAATGCAACCTTACATCAGATTTGTGAGCACCTTCACAT
Done.