Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 234 of 311
Found at i:79021654 original size:27 final size:26
Alignment explanation
Indices: 79021606--79021657 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79021596 GCGAGGCTGC
*
79021606 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
79021632 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
79021658 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79021924 original size:27 final size:27
Alignment explanation
Indices: 79021894--79022086 Score: 208
Period size: 27 Copynumber: 7.2 Consensus size: 27
79021884 AACACCCTAG
** * **
79021894 GGGTAAAATGGTAATTTTATAAATTAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
79021921 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
79021948 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
79021975 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
79022002 GCGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
79022029 GGGTAAAATAGTAATTTTTTAAGTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* **
79022056 GGGTAAAACGGTAATTCCGTAAATC-A
1 GGGTAAAACAGTAATTTTGTAAATCGA
79022082 GGGTA
1 GGGTA
79022087 CTTTGGTAAT
Statistics
Matches: 142, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 6 0.04
27 136 0.96
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:79022071 original size:81 final size:81
Alignment explanation
Indices: 79021894--79022081 Score: 232
Period size: 81 Copynumber: 2.3 Consensus size: 81
79021884 AACACCCTAG
* * * * * *
79021894 GGGTAAAATGGTAATTTTATAAATTAAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACAG
1 GGGTAAAACGGTAATTTTGTAAATCAAGCGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
79021959 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
** * * * *
79021975 GGGTAAAACAATAATTTTGTAAATCGAGCGTAAAATAGTAATTCTGTCAATCGAGGGTAAAATAG
1 GGGTAAAACGGTAATTTTGTAAATCAAGCGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
* *
79022040 TAATTTTTTAAGTCGA
66 TAATTTTGTAAATCGA
**
79022056 GGGTAAAACGGTAATTCCGTAAATCA
1 GGGTAAAACGGTAATTTTGTAAATCA
79022082 GGGTACTTTG
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GGGTAAAACGGTAATTTTGTAAATCAAGCGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
TAATTTTGTAAATCGA
Found at i:79022123 original size:27 final size:27
Alignment explanation
Indices: 79022093--79022157 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
79022083 GGTACTTTGG
79022093 TAATTTTACAAGTCGAGGGTAGTTCAA
1 TAATTTTACAAGTCGAGGGTAGTTCAA
* * *
79022120 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTAGTTCAA
*
79022147 TAATTTCACAA
1 TAATTTTACAA
79022158 ATTAGAGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.35
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTAGTTCAA
Found at i:79022348 original size:27 final size:27
Alignment explanation
Indices: 79022136--79022341 Score: 277
Period size: 27 Copynumber: 7.6 Consensus size: 27
79022126 TACAGGTCGA
** * **
79022136 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79022163 AGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
79022190 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
79022217 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
79022244 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
79022271 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
79022298 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
79022325 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
79022342 GGTAAACTAA
Statistics
Matches: 159, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:79023243 original size:21 final size:21
Alignment explanation
Indices: 79023218--79023315 Score: 58
Period size: 21 Copynumber: 4.5 Consensus size: 21
79023208 AACTCGAGTG
79023218 AAAAAGAAAATGAAAGAAGAA
1 AAAAAGAAAATGAAAGAAGAA
* ** *
79023239 TAAAAGAATTTGAGAGAAGAA
1 AAAAAGAAAATGAAAGAAGAA
79023260 AAAAA-ATTGAAA-GAAAGAA-AA
1 AAAAAGA---AAATGAAAGAAGAA
* *
79023281 AAAAAGATATTGGAAATGAAGAA
1 AAAAAGAAAAT-GAAA-GAAGAA
*
79023304 ATAAAATAAAAT
1 A-AAAAGAAAAT
79023316 TTAGGTGATG
Statistics
Matches: 55, Mismatches: 13, Indels: 15
0.66 0.16 0.18
Matches are distributed among these distances:
19 1 0.02
20 1 0.02
21 32 0.58
22 10 0.18
23 4 0.07
24 7 0.13
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.14
Consensus pattern (21 bp):
AAAAAGAAAATGAAAGAAGAA
Found at i:79023267 original size:19 final size:18
Alignment explanation
Indices: 79023217--79023284 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 18
79023207 AAACTCGAGT
*
79023217 GAAAAAGAAAATGAAAGAA
1 GAAAAA-AAATTGAAAGAA
*
79023236 GAATAAAAGAATTTGAGAGAA
1 GAA-AAAA-AA-TTGAAAGAA
79023257 GAAAAAAAATTGAAAGAAA
1 GAAAAAAAATTGAAAG-AA
79023276 GAAAAAAAA
1 GAAAAAAAA
79023285 AGATATTGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 6 0.14
19 17 0.40
20 9 0.21
21 10 0.24
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (18 bp):
GAAAAAAAATTGAAAGAA
Found at i:79026931 original size:48 final size:48
Alignment explanation
Indices: 79026788--79026950 Score: 140
Period size: 48 Copynumber: 3.5 Consensus size: 48
79026778 ACACTCTAGT
* * * * * *
79026788 TTGTGGATGAACCACCTATGTTTACAGGTTAATATGTTGCCAGT-AGG
1 TTGTGAATGAACCACCTGTGTTTGCAAGTTAATAAGTTGCCAGTAAGC
* * * * *
79026835 TTGTGAAT--A-CACAATGTGTTTG-TAGATAA-AAGTTGCCACTAAGT
1 TTGTGAATGAACCAC-CTGTGTTTGCAAGTTAATAAGTTGCCAGTAAGC
*
79026879 TTGTGAATGAACCACCTGTGTTTGCAAGTTAATACGTTGCCAGTAAGC
1 TTGTGAATGAACCACCTGTGTTTGCAAGTTAATAAGTTGCCAGTAAGC
* * *
79026927 TTGTGGATAAACCACCAGTGTTTG
1 TTGTGAATGAACCACCTGTGTTTG
79026951 TAGATTATTA
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
43 9 0.10
44 17 0.19
45 7 0.08
46 9 0.10
47 15 0.17
48 33 0.37
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.33
Consensus pattern (48 bp):
TTGTGAATGAACCACCTGTGTTTGCAAGTTAATAAGTTGCCAGTAAGC
Found at i:79027102 original size:38 final size:38
Alignment explanation
Indices: 79027042--79027168 Score: 137
Period size: 38 Copynumber: 3.3 Consensus size: 38
79027032 ATACATAAAA
*
79027042 CAGTAGACATGTTTTAACATGTATTTAGTTCAACAGTAG
1 CAGTAGACATG-CTTAACATGTATTTAGTTCAACAGTAG
* * *
79027081 TAGTAGACATGCTTAACATGTATCTGGTTCAACAGTAG
1 CAGTAGACATGCTTAACATGTATTTAGTTCAACAGTAG
* * * * * * *
79027119 CAATAGAAATACTTAACTTGTATTCAGTTCAACGGTAA
1 CAGTAGACATGCTTAACATGTATTTAGTTCAACAGTAG
*
79027157 CAGTAGGCATGC
1 CAGTAGACATGC
79027169 AATCAGTAAT
Statistics
Matches: 70, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
38 60 0.86
39 10 0.14
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (38 bp):
CAGTAGACATGCTTAACATGTATTTAGTTCAACAGTAG
Found at i:79030033 original size:51 final size:50
Alignment explanation
Indices: 79029911--79030059 Score: 155
Period size: 51 Copynumber: 3.0 Consensus size: 50
79029901 AATTCAGACC
* *
79029911 TCAATATGATAAA-AATTATCAAGTTTAATGATTAATTTG---AAAAAAAA
1 TCAATATGA-AAATAATTATCAAATTTAATGATTAACTTGAACAAAAAAAA
* *
79029958 TTAATATGAAATTAATTATCAAATTTAATGATTAACTTGAACAAAAAAAA
1 TCAATATGAAAATAATTATCAAATTTAATGATTAACTTGAACAAAAAAAA
* * * * *
79030008 CTCAATATGAAAATAATT-GCTAAATTTAAAGACTAACTTAAACCAAAAAAA
1 -TCAATATGAAAATAATTATC-AAATTTAATGATTAACTTGAACAAAAAAAA
79030059 T
1 T
79030060 TTATTCCTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
46 2 0.02
47 32 0.38
50 10 0.12
51 41 0.48
ACGTcount: A:0.54, C:0.08, G:0.07, T:0.32
Consensus pattern (50 bp):
TCAATATGAAAATAATTATCAAATTTAATGATTAACTTGAACAAAAAAAA
Found at i:79030700 original size:24 final size:24
Alignment explanation
Indices: 79030668--79030716 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
79030658 GCAGACAGTT
79030668 AATACATTCTACTTATTAAACAAG
1 AATACATTCTACTTATTAAACAAG
79030692 AATACATTCTACTTATTAAACAAG
1 AATACATTCTACTTATTAAACAAG
79030716 A
1 A
79030717 TTTTATGGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (24 bp):
AATACATTCTACTTATTAAACAAG
Found at i:79032672 original size:1 final size:1
Alignment explanation
Indices: 79032666--79032696 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
79032656 ATGCCTTCAT
*
79032666 CCCCCCCCCCCCCCCCCCCCCCCACCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
79032697 GCGTCGGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.03, C:0.97, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:79033617 original size:31 final size:31
Alignment explanation
Indices: 79033582--79033651 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
79033572 GTTTGGATTA
* *
79033582 GGACTAAAATT-TCAAATTTTGAAAAGTATAG
1 GGACTAAAATTGACAAA-TTTAAAAAGTATAG
* *
79033613 GGACTAAAATTGACCAATTTAAAAAGTATAT
1 GGACTAAAATTGACAAATTTAAAAAGTATAG
79033644 GGACTAAA
1 GGACTAAA
79033652 TTTACAACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 31 0.91
32 3 0.09
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.29
Consensus pattern (31 bp):
GGACTAAAATTGACAAATTTAAAAAGTATAG
Found at i:79038620 original size:37 final size:36
Alignment explanation
Indices: 79038472--79038921 Score: 148
Period size: 36 Copynumber: 12.3 Consensus size: 36
79038462 TCGTTTTTGA
* *
79038472 CAACCTT-AAAAAGGTTGCGAGA-AGCCTTGTTTACGG
1 CAACCTTAAAAAAGGTTGCGATAGA-CC-TGTCTACGG
* * * *
79038508 CAACCCTTAATAAAA-ATTGCTATAGACCTTATCTACAG
1 CAA-CCTTAA-AAAAGGTTGCGATAGACC-TGTCTACGG
* * * *
79038546 CAACCTTTTAAAAAAGTTATG-GTATA-TCTTGTTTACGG
1 CAACC--TTAAAAAAGGT-TGCG-ATAGACCTGTCTACGG
*
79038584 CAACCTTGAAAAAAGGTTGCGATAGGCCTGTCTACGG
1 CAACCTT-AAAAAAGGTTGCGATAGACCTGTCTACGG
* * * * * * * *
79038621 AAACATTTTAAAAATGTTACAATAGACCTTGTTTATGG
1 CAAC-CTTAAAAAAGGTTGCGATAGACC-TGTCTACGG
* * **
79038659 CAACCTTAAAAAAAGGTTGGGATAGACTTGTCTAAAG
1 CAACCTT-AAAAAAGGTTGCGATAGACCTGTCTACGG
* * * *
79038696 CAACCTTAAAAAA-GTTGGTGATAGA-TTCGTTTAAGG
1 CAACCTTAAAAAAGGTT-GCGATAGACCT-GTCTACGG
* * * * *
79038732 TAACCCT-AAAAAGGTTGCGATAGATCTTGTTTAAGG
1 CAACCTTAAAAAAGGTTGCGATAGA-CCTGTCTACGG
* ** * * * * *
79038768 AAAGTTTTAGAAAATGTTGCGATTGACCTGTCTAAGA
1 CAA-CCTTAAAAAAGGTTGCGATAGACCTGTCTACGG
* ** ** * *
79038805 CAACGTT-AAAAATTTTGCGATAGACCCATTTACAG
1 CAACCTTAAAAAAGGTTGCGATAGACCTGTCTACGG
* * * *
79038840 CAACCCT-AAAAAGGTTGCGATAGACCTTTTCCAAGG
1 CAACCTTAAAAAAGGTTGCGATAGACC-TGTCTACGG
* * * * **
79038876 CAA-CTTAAAAAAAGTTGGGATAAACCCGTCTAAAG
1 CAACCTTAAAAAAGGTTGCGATAGACCTGTCTACGG
79038911 CAACCTTAAAA
1 CAACCTTAAAA
79038922 TGGTTAGGGT
Statistics
Matches: 306, Mismatches: 83, Indels: 50
0.70 0.19 0.11
Matches are distributed among these distances:
35 68 0.22
36 78 0.25
37 70 0.23
38 74 0.24
39 11 0.04
40 5 0.02
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.28
Consensus pattern (36 bp):
CAACCTTAAAAAAGGTTGCGATAGACCTGTCTACGG
Found at i:79038914 original size:35 final size:34
Alignment explanation
Indices: 79038875--79038967 Score: 116
Period size: 35 Copynumber: 2.6 Consensus size: 34
79038865 CTTTTCCAAG
*
79038875 GCAACTTAAAAAAAGTTGGGATAAACCCGTCTAAA
1 GCAACTT-AAAAAGGTTGGGATAAACCCGTCTAAA
* *
79038910 GCAACCTTAAAATGGTTAGGG-TAAACCCGTCTAAG
1 GCAA-CTTAAAAAGGTT-GGGATAAACCCGTCTAAA
79038945 GCACACTTAAAAAGGTTGGGATA
1 GCA-ACTTAAAAAGGTTGGGATA
79038968 GATCTTTGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
34 3 0.06
35 40 0.80
36 7 0.14
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.22
Consensus pattern (34 bp):
GCAACTTAAAAAGGTTGGGATAAACCCGTCTAAA
Found at i:79040091 original size:104 final size:104
Alignment explanation
Indices: 79039973--79040183 Score: 413
Period size: 104 Copynumber: 2.0 Consensus size: 104
79039963 CGCTCATCTC
79039973 TTCAATCAATGTAGTGATGGCCGATGTAGTTTGGCTTTCTCGGGTAACTGACCCATAGCCAAACA
1 TTCAATCAATGTAGTGATGGCCGATGTAGTTTGGCTTTCTCGGGTAACTGACCCATAGCCAAACA
79040038 ACCTAGATTTGGTCATCCCACGTCCATATCCCAACATTT
66 ACCTAGATTTGGTCATCCCACGTCCATATCCCAACATTT
*
79040077 TTCAATCAATGTAGTGATGGCCGATGTAGTTTGGCTTTCTCGGGTAACTGACCCGTAGCCAAACA
1 TTCAATCAATGTAGTGATGGCCGATGTAGTTTGGCTTTCTCGGGTAACTGACCCATAGCCAAACA
79040142 ACCTAGATTTGGTCATCCCACGTCCATATCCCAACATTT
66 ACCTAGATTTGGTCATCCCACGTCCATATCCCAACATTT
79040181 TTC
1 TTC
79040184 CATCCTTGTC
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (104 bp):
TTCAATCAATGTAGTGATGGCCGATGTAGTTTGGCTTTCTCGGGTAACTGACCCATAGCCAAACA
ACCTAGATTTGGTCATCCCACGTCCATATCCCAACATTT
Found at i:79051624 original size:35 final size:35
Alignment explanation
Indices: 79051592--79051712 Score: 179
Period size: 35 Copynumber: 3.5 Consensus size: 35
79051582 GGAGCAGGTG
* *
79051592 GTGGACGGCAGATGCACCGGTGGCTAGGGCAGGCA
1 GTGGACAGCAGATGCACCAGTGGCTAGGGCAGGCA
* *
79051627 GTGGACAGCAGATGCACCCGTGGCTTGGGCAGGCA
1 GTGGACAGCAGATGCACCAGTGGCTAGGGCAGGCA
* *
79051662 GTGGACAACAGATGCACCAGTGGCTGGGGCAGGCA
1 GTGGACAGCAGATGCACCAGTGGCTAGGGCAGGCA
*
79051697 GTGGACGGCAGATGCA
1 GTGGACAGCAGATGCA
79051713 ATAGGTTTGC
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 78 1.00
ACGTcount: A:0.22, C:0.23, G:0.42, T:0.12
Consensus pattern (35 bp):
GTGGACAGCAGATGCACCAGTGGCTAGGGCAGGCA
Found at i:79052350 original size:22 final size:23
Alignment explanation
Indices: 79052294--79052357 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
79052284 TACTGAAAAG
* *
79052294 TTTTTGTTTTA-ATTTTTTTTCA
1 TTTTTATTTTATATTTTTTCTCA
***
79052316 TTTTTAACATATATTTTTTCT-A
1 TTTTTATTTTATATTTTTTCTCA
79052338 TTTTTATTTTATAATTTTTT
1 TTTTTATTTTAT-ATTTTTT
79052358 TGAATATTGA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
22 17 0.53
23 15 0.47
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTTTATTTTATATTTTTTCTCA
Found at i:79052407 original size:8 final size:8
Alignment explanation
Indices: 79052396--79052446 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 8
79052386 GACTAAAATA
79052396 TTAAATTT
1 TTAAATTT
79052404 TT-AATTT
1 TTAAATTT
79052411 TTAAATATTT
1 TT-AA-ATTT
79052421 TTGAAGATTT
1 TT-AA-ATTT
79052431 TTATAATTT
1 TTA-AATTT
79052440 TTAAATT
1 TTAAATT
79052447 AACATATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.19
8 6 0.16
9 9 0.24
10 15 0.41
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (8 bp):
TTAAATTT
Found at i:79053042 original size:7 final size:7
Alignment explanation
Indices: 79053023--79053096 Score: 58
Period size: 7 Copynumber: 10.3 Consensus size: 7
79053013 TATGTTAAAA
79053023 AAACCCTT
1 AAACCC-T
79053031 AAACCCT
1 AAACCCT
79053038 AAACCCT
1 AAACCCT
*
79053045 AAACTCT
1 AAACCCT
*
79053052 AAAACCT
1 AAACCCT
***
79053059 AGAATATT
1 A-AACCCT
*
79053067 AAACTCT
1 AAACCCT
*
79053074 AAACACT
1 AAACCCT
*
79053081 AAACCTT
1 AAACCCT
79053088 AAACCCT
1 AAACCCT
79053095 AA
1 AA
79053097 CCTAAATTGA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
7 42 0.81
8 10 0.19
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.22
Consensus pattern (7 bp):
AAACCCT
Found at i:79053661 original size:131 final size:131
Alignment explanation
Indices: 79053331--79054121 Score: 914
Period size: 131 Copynumber: 6.0 Consensus size: 131
79053321 TATGTTGACA
* * * * *
79053331 AGTCTATCTG-AACACTTAGGAAAGTGCCGCCCCAAAACTGTAGTCTTAGGACTAGACAAAAGCC
1 AGTCTATC-GCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAA-CC
** * *
79053395 AACTCTTGCTCAAGCGTTGCCTTAGGCATACCTATTGCAACCCTTATACAAAGAGTTGCCGAAAG
64 AACTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAG
* *
79053460 CGC
129 AGT
* * *
79053463 AATTTATCGCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAACCA
1 AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACAC-AAAACCA
* * * *
79053528 ACTCTTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGACGAAAGA
65 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGA
79053593 GT
130 GT
* *
79053595 AGTCTAT-GCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCCTAGGACTACACAAACTCCA
1 AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAA-ACCA
* *
79053659 ACTCTTATGCAAGCGTTGCCGTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCC-AAAGC
65 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAG-
79053723 A-T
129 AGT
* * * * * *
79053725 AGTTTATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTATGACTACACAAATGCTA
1 AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAA-ACCA
* * * *
79053790 ACTC--ATTCAAGCGTTGCCATAGGCATACATATCGCAACCCTTATACAAATAGTTGGCGAAAGC
65 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGA
79053853 GT
130 GT
* * * *
79053855 AGTATATTC-CAACACTTAGGAAAGTGTTGCCCCAAAAGTGTCGTCTTAGGACTACACAACACCA
1 AGTCTA-TCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAACCA
* * * * * *
79053919 ACTCTTATTTAAGCGTTGCTTTAGACATGCTTATCCCAACCCTTATACAAAGAGTTGCCGAAAGC
65 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAA--
79053984 GTATGTT
128 G-A-G-T
* * * *
79053991 GGCCAGTCTATCGCAACACTTAGAAAAGTGTTGCCTCATAAA-TGTCGTCTTAGGACTAGACAAA
1 ----AGTCTATCGCAACACTTAGGAAAGTGTCGCCACA-AAAGTGTCGTCTTAGGACTACACAAA
* * * * *
79054055 GCCAACTCTTATTTAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGA
61 ACCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGA
79054120 AA
126 AA
79054122 ATGTATGTTG
Statistics
Matches: 568, Mismatches: 70, Indels: 34
0.85 0.10 0.05
Matches are distributed among these distances:
129 55 0.10
130 70 0.12
131 209 0.37
132 112 0.20
133 5 0.01
135 1 0.00
136 1 0.00
139 2 0.00
140 110 0.19
141 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (131 bp):
AGTCTATCGCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAACCAA
CTCTTATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGAG
T
Found at i:79053935 original size:260 final size:260
Alignment explanation
Indices: 79053341--79054121 Score: 956
Period size: 260 Copynumber: 3.0 Consensus size: 260
79053331 AGTCTATCTG
* * * * * **
79053341 AACACTTAGGAAAGTGCCGCCCCAAAACTGTAGTCTTAGGACTAGACAAAAGCCAACTCTTGCTC
1 AACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAACA-CCAACTCTTATTC
* * ** *
79053406 AAGCGTTGCCTTAGGCATACCTATTGCAACCCTTATACAAAGAGTTGCCGAAAGCGCAATTTATC
65 AAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGCATAGTTTATC
*
79053471 GCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTAT
130 GCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACAC-AAAGCCAACTC-TAT
* * * * *
79053536 TCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGACGAAAGAGTAGTCTA
193 TCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAAAGTTGACGAAAGAGTAGTATA
*
79053601 TGC
258 TCC
* * * *
79053604 AACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCCTAGGACTACACAAACTCCAACTCTTATGC
1 AACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACAC-AACACCAACTCTTATTC
*
79053669 AAGCGTTGCCGTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCC-AAAGCATAGTTTATC
65 AAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGCATAGTTTATC
* * *
79053733 CCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTATGACTACACAAATGCTAACTC-ATT
130 GCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAA-GCCAACTCTATT
* * * *
79053797 CAAGCGTTGCCATAGGCATACATATCGCAACCCTTATACAAATAGTTGGCGAAAGCGTAGTATAT
194 CAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAAAGTTGACGAAAGAGTAGTATA-
79053862 TCC
258 TCC
* *
79053865 AACACTTAGGAAAGTGTTGCCCCAAAAGTGTCGTCTTAGGACTACACAACACCAACTCTTATTTA
1 AACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAACACCAACTCTTATTCA
* * * * *
79053930 AGCGTTGCTTTAGACATGCTTATCCCAACCCTTATACAAAGAGTTGCCGAAAGCGTATGTTGGCC
66 AGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGC--A---T----
* * ** * *
79053995 AGTCTATCGCAACACTTAGAAAAGTGTTGCCTCATAAA-TGTCGTCTTAGGACTAGACAAAGCCA
122 AGTTTATCGCAACACTTAGGAAAGTGTCACCACA-AAAGTGTCGTCTTAGGACTACACAAAGCCA
* * * *
79054059 ACTCTTATTTAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGAAA
186 ACTC-TATTCAAGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAAAGTTGACGAAA
79054122 ATGTATGTTG
Statistics
Matches: 445, Mismatches: 57, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
260 116 0.26
261 54 0.12
262 65 0.15
263 98 0.22
264 2 0.00
266 1 0.00
269 7 0.02
270 48 0.11
271 54 0.12
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (260 bp):
AACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAACACCAACTCTTATTCA
AGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAGAGTTGCCGAAAGCATAGTTTATCG
CAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAGCCAACTCTATTCA
AGCGTTGCCTTAGGCATACATATCGCAACCCTTATACAAAAAGTTGACGAAAGAGTAGTATATCC
Found at i:79054116 original size:140 final size:140
Alignment explanation
Indices: 79053864--79054183 Score: 509
Period size: 140 Copynumber: 2.3 Consensus size: 140
79053854 TAGTATATTC
*
79053864 CAACACTTAGGAAAGTGTTGCCCCA-AAAGTGTCGTCTTAGGACTACACAACACCAACTCTTATT
1 CAACACTTAGAAAAGTGTTGCCCCATAAA-TGTCGTCTTAGGACTACACAACACCAACTCTTATT
* * *
79053928 TAAGCGTTGCTTTAGACATGCTTATCCCAACCCTTATACAAAGAGTTGCCGAAAGCGTATGTTGG
65 TAAGCGTTGCTTTAGACATGCATATCCCAACCCTTATACAAAAAGTTGCCGAAAACGTATGTTGG
79053993 CCAGTCTATCG
130 CCAGTCTATCG
* *
79054004 CAACACTTAGAAAAGTGTTGCCTCATAAATGTCGTCTTAGGACTAGACAA-AGCCAACTCTTATT
1 CAACACTTAGAAAAGTGTTGCCCCATAAATGTCGTCTTAGGACTACACAACA-CCAACTCTTATT
* * *
79054068 TAAGCGTTGCTTTAGGCATGCATATCGCAACCCTTATACAAAAAGTTGCCGAAAATGTATGTTGG
65 TAAGCGTTGCTTTAGACATGCATATCCCAACCCTTATACAAAAAGTTGCCGAAAACGTATGTTGG
79054133 CCAGTCTATCG
130 CCAGTCTATCG
* *
79054144 CAACACTTAGAAAAGTGTTGCCCCATAACTATCGTCTTAG
1 CAACACTTAGAAAAGTGTTGCCCCATAAATGTCGTCTTAG
79054184 CACTGTTTTG
Statistics
Matches: 166, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
139 1 0.01
140 162 0.98
141 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (140 bp):
CAACACTTAGAAAAGTGTTGCCCCATAAATGTCGTCTTAGGACTACACAACACCAACTCTTATTT
AAGCGTTGCTTTAGACATGCATATCCCAACCCTTATACAAAAAGTTGCCGAAAACGTATGTTGGC
CAGTCTATCG
Found at i:79054468 original size:7 final size:7
Alignment explanation
Indices: 79054456--79054483 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
79054446 AAATATTGAA
79054456 TTATATT
1 TTATATT
79054463 TTATATT
1 TTATATT
79054470 TTATATT
1 TTATATT
79054477 TTATATT
1 TTATATT
79054484 CATATTAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTATATT
Found at i:79055133 original size:30 final size:28
Alignment explanation
Indices: 79055099--79055164 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 28
79055089 AAATTTTATG
*
79055099 ATTTTTTAAACAATTTTAAAATAAAATATT
1 ATTTTTTAAA-AA-TTTAAAATAAAATATC
*
79055129 ATTTTTCTAAATATTTAAAATAAAATATC
1 ATTTTT-TAAAAATTTAAAATAAAATATC
79055158 ATTTTTT
1 ATTTTTT
79055165 TTCACATGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 1 0.03
29 21 0.64
30 7 0.21
31 4 0.12
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (28 bp):
ATTTTTTAAAAATTTAAAATAAAATATC
Found at i:79057864 original size:39 final size:40
Alignment explanation
Indices: 79057786--79057864 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
79057776 AAATATAATA
*
79057786 GAATAACAAACAAAACAGTTTATAAAAAAAATTTGAAATT
1 GAATAACAAACAAAACAATTTATAAAAAAAATTTGAAATT
* *
79057826 GAATAACAAACAAAACAATTTGT-AAAAAATTTTGAAATT
1 GAATAACAAACAAAACAATTTATAAAAAAAATTTGAAATT
79057865 AAATGAACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 15 0.42
40 21 0.58
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.27
Consensus pattern (40 bp):
GAATAACAAACAAAACAATTTATAAAAAAAATTTGAAATT
Found at i:79067781 original size:29 final size:30
Alignment explanation
Indices: 79067738--79067797 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
79067728 CAAGAATTTG
* *
79067738 ATAAAATTAAAATTTTGTATATAAAATTAC
1 ATAAAATTAAAATTTTATATACAAAATTAC
79067768 ATAAAA-TAAAATTTTATATACAAAATTAC
1 ATAAAATTAAAATTTTATATACAAAATTAC
79067797 A
1 A
79067798 CTGAATTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (30 bp):
ATAAAATTAAAATTTTATATACAAAATTAC
Found at i:79072932 original size:15 final size:15
Alignment explanation
Indices: 79072904--79072955 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
79072894 TTTTTTTATA
79072904 TATTATTTAAATTTT
1 TATTATTTAAATTTT
79072919 TATT-TTTAATATTTT
1 TATTATTTAA-ATTTT
*
79072934 TATAAAATTTAAATTATT
1 TAT--TATTTAAATT-TT
79072952 TATT
1 TATT
79072956 GAGGTATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 5 0.17
15 12 0.40
17 3 0.10
18 10 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTTAAATTTT
Found at i:79092361 original size:11 final size:11
Alignment explanation
Indices: 79092345--79092370 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
79092335 CTAAAAATGA
79092345 TTTTTTTTAAT
1 TTTTTTTTAAT
79092356 TTTTTTTTAAT
1 TTTTTTTTAAT
79092367 TTTT
1 TTTT
79092371 AGAGTTAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTTAAT
Found at i:79092412 original size:31 final size:31
Alignment explanation
Indices: 79092377--79092475 Score: 80
Period size: 31 Copynumber: 3.3 Consensus size: 31
79092367 TTTTAGAGTT
79092377 AGGACTAAATTGACAGATTTTGTAAATATTG
1 AGGACTAAATTGACAGATTTTGTAAATATTG
* * ** *
79092408 AGGACCAAATTTATTGCATTTT-TATA-ATT-
1 AGGACTAAATTGACAG-ATTTTGTAAATATTG
* *
79092437 A-GAGCTAAAATGACAAATTTTGTAAATATTG
1 AGGA-CTAAATTGACAGATTTTGTAAATATTG
*
79092468 AGGGCTAA
1 AGGACTAA
79092476 TTTTGTTGAT
Statistics
Matches: 49, Mismatches: 13, Indels: 12
0.66 0.18 0.16
Matches are distributed among these distances:
28 7 0.14
29 10 0.20
30 6 0.12
31 20 0.41
32 6 0.12
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.35
Consensus pattern (31 bp):
AGGACTAAATTGACAGATTTTGTAAATATTG
Found at i:79096476 original size:26 final size:26
Alignment explanation
Indices: 79096430--79096482 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
79096420 TCAAACATGC
*
79096430 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
79096456 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
79096482 A
1 A
79096483 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:79097999 original size:26 final size:26
Alignment explanation
Indices: 79097968--79098075 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
79097958 TGAAATGCCC
*
79097968 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
79097994 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
79098020 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
79098046 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
79098072 ATCA
1 ATCA
79098076 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:79103102 original size:14 final size:14
Alignment explanation
Indices: 79103083--79103113 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
79103073 CTGAAGTAGA
79103083 AAAATCATTATCAG
1 AAAATCATTATCAG
79103097 AAAATCATTATCAG
1 AAAATCATTATCAG
79103111 AAA
1 AAA
79103114 GAGAAATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (14 bp):
AAAATCATTATCAG
Found at i:79104603 original size:19 final size:19
Alignment explanation
Indices: 79104557--79104604 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
79104547 GTATATATTT
79104557 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
79104575 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
79104594 TAAGTTTTATT
1 TAAATTTTATT
79104605 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:79104666 original size:43 final size:43
Alignment explanation
Indices: 79104618--79104710 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
79104608 ATTCTAGAAA
79104618 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
79104661 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
79104704 TATTTTC
1 TATTTTC
79104711 CCAATTAAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:79109323 original size:19 final size:19
Alignment explanation
Indices: 79109281--79109324 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
79109271 ATATTTTTAA
*
79109281 TTTATTTAGGTAGATAAAT
1 TTTATTTAGATAGATAAAT
* *
79109300 CTTATTTAGATAGATAAGT
1 TTTATTTAGATAGATAAAT
79109319 TTTATT
1 TTTATT
79109325 CATATTCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.14, T:0.50
Consensus pattern (19 bp):
TTTATTTAGATAGATAAAT
Found at i:79109386 original size:43 final size:43
Alignment explanation
Indices: 79109338--79109430 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
79109328 ATTCTAGAAA
*
79109338 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAATAGTTTACTAGAATAAGGGAAC
* *
79109381 TATTTTCTTTTTATGTTTTAATAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAATAGTTTACTAGAATAAGGGAAC
79109424 TATTTTC
1 TATTTTC
79109431 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAATAGTTTACTAGAATAAGGGAAC
Found at i:79114836 original size:32 final size:32
Alignment explanation
Indices: 79114792--79114855 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
79114782 TCAATACTAG
* *
79114792 TCAGAACGATAAAGTGAAGTTGATAGATGCTA
1 TCAGAACAATAAAGTGAAGTTGACAGATGCTA
*
79114824 TCAGAACAATAAAGTGAAGTTGGCAGATGCTA
1 TCAGAACAATAAAGTGAAGTTGACAGATGCTA
79114856 ACTCTGAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.23
Consensus pattern (32 bp):
TCAGAACAATAAAGTGAAGTTGACAGATGCTA
Found at i:79123810 original size:46 final size:46
Alignment explanation
Indices: 79123758--79123939 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
79123748 AGTGTGCTCT
* * *
79123758 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATAGCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
79123804 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
79123850 CTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
79123896 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
79123940 TCATGTCAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 122 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79133174 original size:12 final size:12
Alignment explanation
Indices: 79133157--79133196 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
79133147 TAGCATACAC
79133157 TTCTCTCTCATT
1 TTCTCTCTCATT
79133169 TTCTCTCTCATT
1 TTCTCTCTCATT
79133181 TTCTCT-TCTATT
1 TTCTCTCTC-ATT
79133193 TTCT
1 TTCT
79133197 TTCCTCTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCTCTCTCATT
Found at i:79135011 original size:18 final size:18
Alignment explanation
Indices: 79134957--79135016 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
79134947 AATTCAAAGT
*
79134957 ATTTAAAAATTTTAT-AA
1 ATTTAAAAATATTATAAA
* *
79134974 TTTTAAAAA-GTTATAGAA
1 ATTTAAAAATATTATA-AA
79134992 ATTTAAAAATATTATAAA
1 ATTTAAAAATATTATAAA
*
79135010 ATCTAAA
1 ATTTAAA
79135017 CTAAATATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 4 0.11
17 8 0.23
18 18 0.51
19 5 0.14
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (18 bp):
ATTTAAAAATATTATAAA
Found at i:79136192 original size:13 final size:14
Alignment explanation
Indices: 79136156--79136206 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 14
79136146 CTCAAAGGGA
*
79136156 GTTTTAGGTTTGG-
1 GTTTGAGGTTTGGT
*
79136169 GTTTGATGTTTGGT
1 GTTTGAGGTTTGGT
79136183 GTTTG-GGTTTGGT
1 GTTTGAGGTTTGGT
* *
79136196 ATTTAAGGTTT
1 GTTTGAGGTTT
79136207 ATGGTTCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 21 0.68
14 10 0.32
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.55
Consensus pattern (14 bp):
GTTTGAGGTTTGGT
Found at i:79136206 original size:20 final size:19
Alignment explanation
Indices: 79136158--79136206 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
79136148 CAAAGGGAGT
*
79136158 TTTAGGTTTGGGTTTGATG
1 TTTAGGTTTGGGTTTGATA
* *
79136177 TTTGGTGTTTGGGTTTGGTA
1 TTTAG-GTTTGGGTTTGATA
79136197 TTTAAGGTTT
1 TTT-AGGTTT
79136207 ATGGTTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.17
20 19 0.79
21 1 0.04
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.55
Consensus pattern (19 bp):
TTTAGGTTTGGGTTTGATA
Found at i:79137495 original size:91 final size:90
Alignment explanation
Indices: 79137371--79137639 Score: 260
Period size: 91 Copynumber: 3.0 Consensus size: 90
79137361 AACTCCAAAT
* * * *
79137371 ACCATAATAATACACAGATTGATAGTTCGAGTACCACATTGAATATTTTCAAAGTATAAGTATCA
1 ACCA-AATAATACACAAATTGATAGTTCAAGTACCACATTGAACATTTTCAAAGTACAAGTATCA
** * *
79137436 TGTTGGGCAT-TTCATGAAAGTACA-A
65 CATTAGACATGTT-ATGAAAGTACAGA
* * * *
79137461 ACCTTAAATAATACACAAACTAATAGTTTAAGTACCACATTGGACATTTTCAAAGTACAAGTATC
1 ACC--AAATAATACACAAATTGATAGTTCAAGTACCACATTGAACATTTTCAAAGTACAAGTATC
*
79137526 ACATTAGACATGTTATGAAAGTACATGT
64 ACATTAGACATGTTATGAAAGTACA-GA
* * *
79137554 ACCAAATAATACACAAATTGATGGTTCAAGTACCACATT-AGACACTTTT-AAGGTACATA-TAC
1 ACCAAATAATACACAAATTGATAGTTCAAGTACCACATTGA-ACA-TTTTCAAAGTACA-AGTAT
* * *
79137616 CACATTGGATATTTTATGAAAGTA
63 CACATTAGACATGTTATGAAAGTA
79137640 TAGGTACCAA
Statistics
Matches: 148, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
90 3 0.02
91 134 0.91
92 8 0.05
93 3 0.02
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (90 bp):
ACCAAATAATACACAAATTGATAGTTCAAGTACCACATTGAACATTTTCAAAGTACAAGTATCAC
ATTAGACATGTTATGAAAGTACAGA
Found at i:79137535 original size:29 final size:31
Alignment explanation
Indices: 79137490--79137557 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 31
79137480 CTAATAGTTT
*
79137490 AAGTACCACATTGGACAT-TT-TCAAAGTAC
1 AAGTACCACATTAGACATGTTATCAAAGTAC
* *
79137519 AAGTATCACATTAGACATGTTATGAAAGTAC
1 AAGTACCACATTAGACATGTTATCAAAGTAC
*
79137550 ATGTACCA
1 AAGTACCA
79137558 AATAATACAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 16 0.50
30 2 0.06
31 14 0.44
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.28
Consensus pattern (31 bp):
AAGTACCACATTAGACATGTTATCAAAGTAC
Found at i:79140360 original size:18 final size:18
Alignment explanation
Indices: 79140337--79140380 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
79140327 ATGCCAGGTG
*
79140337 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
79140355 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
79140373 TGTTTCCT
1 TGTATCCT
79140381 TTTCCTAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.43
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:79144095 original size:126 final size:126
Alignment explanation
Indices: 79143870--79144249 Score: 627
Period size: 126 Copynumber: 3.0 Consensus size: 126
79143860 TATAGCCTCG
* * * * *
79143870 TTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACATGAGAGCTTTTTCCAGAAATTTTACTGA
1 TTTTTCCACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTGA
* *
79143935 CATTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATTA
* *
79143996 TTTTTCCATGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTAA
1 TTTTTCCACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTGA
79144061 CAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATTA
79144122 TTTTTCCACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTGA
1 TTTTTCCACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTGA
* * *
79144187 CAGTGCATCCTACTTGAAGCGTTTTCCGACACTATTT-TTCCAGAAACGTCTGCTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTT-CGGCACTATTTGTT-CAGAAACGTCTACTCAGAATTA
79144249 T
1 T
79144250 ACTTGCAGAA
Statistics
Matches: 238, Mismatches: 14, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
126 206 0.87
127 32 0.13
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (126 bp):
TTTTTCCACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTGA
CAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATTA
Found at i:79148940 original size:29 final size:29
Alignment explanation
Indices: 79148898--79148956 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79148888 TTCTCAAGCC
79148898 TTCAACAAACTTGGGATGGGCTAGGCAAT
1 TTCAACAAACTTGGGATGGGCTAGGCAAT
79148927 TTCAACAAACTTGGGATGGGCTAGGCAAT
1 TTCAACAAACTTGGGATGGGCTAGGCAAT
79148956 T
1 T
79148957 ATCTACTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (29 bp):
TTCAACAAACTTGGGATGGGCTAGGCAAT
Found at i:79150733 original size:12 final size:12
Alignment explanation
Indices: 79150713--79150773 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
79150703 TTATAATTCT
79150713 TATACATACATA
1 TATACATACATA
* *
79150725 TATATATACGTA
1 TATACATACATA
*
79150737 TAGACATACATA
1 TATACATACATA
* * *
79150749 TTTTCATTATATA
1 TATACA-TACATA
*
79150762 TATACCTACATA
1 TATACATACATA
79150774 GTTTTTTTTG
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
12 27 0.77
13 8 0.23
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (12 bp):
TATACATACATA
Found at i:79151007 original size:15 final size:15
Alignment explanation
Indices: 79150987--79151020 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
79150977 TTTATTTTTG
* *
79150987 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
79151002 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
79151017 TTAT
1 TTAT
79151021 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:79155308 original size:6 final size:6
Alignment explanation
Indices: 79155299--79155396 Score: 53
Period size: 6 Copynumber: 16.8 Consensus size: 6
79155289 GGAAAAAAGA
* * * *
79155299 AAAATC AAAATC AAAGTC AAAATG AAAAT- GAAA-- AAAATC AAAAATA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC -AAAATC
* * ** * *
79155345 AAAATA AAAAAC AAAAAG AAGAA-- AAAATC AAAATC AAGATC AAAATG
1 AAAATC AAAATC AAAATC AA-AATC AAAATC AAAATC AAAATC AAAATC
79155392 AAAAT
1 AAAAT
79155397 GAGAAAAAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
4 5 0.07
5 5 0.07
6 57 0.77
7 7 0.09
ACGTcount: A:0.71, C:0.08, G:0.07, T:0.13
Consensus pattern (6 bp):
AAAATC
Found at i:79156352 original size:12 final size:13
Alignment explanation
Indices: 79156335--79156365 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
79156325 CAAAAAAAAA
79156335 AAAAATGA-AATG
1 AAAAATGAGAATG
79156347 AAAAATGAGAATG
1 AAAAATGAGAATG
79156360 AAAAAT
1 AAAAAT
79156366 AAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAAAATGAGAATG
Found at i:79157676 original size:43 final size:43
Alignment explanation
Indices: 79157628--79157758 Score: 110
Period size: 43 Copynumber: 3.1 Consensus size: 43
79157618 AAAACAAAGC
79157628 CTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGAT
** * * * ** *
79157671 CTTGCCTTCCA--GCGTTAACAACGAAGCAGATCGAA-AA-CA-AGC
1 CTTGCCTT-CATTG-GTT-ACAGTGGAGCTGGTTAAAGAAGCAGA-T
*
79157713 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGAT
79157756 CTT
1 CTT
79157759 ATCTTCCTAC
Statistics
Matches: 62, Mismatches: 17, Indels: 18
0.64 0.18 0.19
Matches are distributed among these distances:
41 13 0.21
42 16 0.26
43 19 0.31
44 14 0.23
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
CTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGAT
Found at i:79157765 original size:85 final size:85
Alignment explanation
Indices: 79157614--79157852 Score: 273
Period size: 85 Copynumber: 2.8 Consensus size: 85
79157604 ATCAGTGAAC
* **
79157614 ATCGAAAACAAAGCCTTGCCTTCATTGGTTACAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTT
1 ATCGAAAAC-AAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTATCTT
*
79157679 CC-AGCGTTAACAACGAAGCAG
65 CCTA-CATTAACAACGAAGCAG
79157700 ATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTATCTTC
1 ATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTATCTTC
* * *
79157765 CTACATTGACAGCGAAGTAG
66 CTACATTAACAACGAAGCAG
* * * * * * * * * *
79157785 ATCGAGGACACAAGCCTTGCCTCCCTTAGTTGTAGGGGAGCAGATCAAAGACAGCAAATCTTATC
1 ATCGA--AAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATCTTATC
79157850 TTC
63 TTC
79157853 AAGTGTAAGG
Statistics
Matches: 132, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
85 72 0.55
86 10 0.08
87 35 0.27
88 15 0.11
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (85 bp):
ATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTATCTTC
CTACATTAACAACGAAGCAG
Found at i:79157979 original size:43 final size:43
Alignment explanation
Indices: 79157926--79158345 Score: 244
Period size: 43 Copynumber: 9.7 Consensus size: 43
79157916 GAAATTTCAG
*
79157926 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGACATA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
* * * * * *
79157969 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAATAAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
* * * * * *
79158011 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCA-G
1 --ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
* * * * *
79158054 GTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGA-ATTGCA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACA-T--A
* * *
79158099 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATA
1 -ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
* * * * * *
79158143 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAATAAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
* * * * * *
79158185 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCA-G
1 --ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
* * * * * * *
79158228 GTATTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGA-ATTGCA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACA-T--A
* * * * * **
79158273 GATCTTACCTCTCTGAGGTTACAGCGAAGCAGATTAAAGACATA
1 -ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
*
79158317 ATCCTATCTCCCTGAAGTTACAGTGGAGC
1 ATCTTATCTCCCTGAAGTTACAGTGGAGC
79158346 GGATTAAAAT
Statistics
Matches: 284, Mismatches: 73, Indels: 40
0.72 0.18 0.10
Matches are distributed among these distances:
41 60 0.21
42 11 0.04
43 82 0.29
44 60 0.21
45 2 0.01
46 67 0.24
47 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACATA
Found at i:79158016 original size:87 final size:87
Alignment explanation
Indices: 79157925--79158375 Score: 414
Period size: 87 Copynumber: 5.2 Consensus size: 87
79157915 GGAAATTTCA
*
79157925 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCTCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTAC
79157990 AGTGGAGCGGATTAAAATAAAG
66 AGTGGAGCGGATTAAAATAAAG
* * * * * ** * *
79158012 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCA-GGTCTTATCTCCCTGAGGTTAC
1 GATCTTATCTCTCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTAC
* ** ** **
79158075 AGCGGAGTAGACCGAAGAATTGCA-
66 AGTGGAGCGGA-TTAA-AA-TAAAG
* * *
79158099 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCTCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTAC
79158164 AGTGGAGCGGATTAAAATAAAG
66 AGTGGAGCGGATTAAAATAAAG
* * * * * * *
79158186 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAGGT-AT--TATTTCCCTGAGGTT
1 GATCTTATCTCTCTGAGGTTACAGTGGAGCAGATCGAAGACA--TAATCCTATCTCCCTGAAGTT
* ** ** **
79158247 ACAGCGGAGTAGACCGAAGAATTGCA-
64 ACAGTGGAGCGGA-TTAA-AA-TAAAG
* * * **
79158273 GATCTTACCTCTCTGAGGTTACAGCGAAGCAGATTAAAGACATAATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCTCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTAC
79158338 AGTGGAGCGGATTAAAATAAAG
66 AGTGGAGCGGATTAAAATAAAG
*
79158360 AATCTTATCTCTCTGA
1 GATCTTATCTCTCTGA
79158376 AGTGGCAGTA
Statistics
Matches: 274, Mismatches: 74, Indels: 32
0.72 0.19 0.08
Matches are distributed among these distances:
85 49 0.18
86 12 0.04
87 152 0.55
88 12 0.04
89 49 0.18
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (87 bp):
GATCTTATCTCTCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTAC
AGTGGAGCGGATTAAAATAAAG
Found at i:79158107 original size:46 final size:45
Alignment explanation
Indices: 79157921--79158298 Score: 207
Period size: 46 Copynumber: 8.7 Consensus size: 45
79157911 GGTTGGAAAT
* * *
79157921 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGACA
1 TTCAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGA-A
* * * ** **
79157967 -T-A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA
1 TTCAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
** * * ** * *
79158007 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA
1 TTCA-GATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
*
79158050 -TCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
1 TTCAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
* *
79158094 TTGCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAG-A
1 TT-CAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
* * * ** **
79158139 TAT-A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA
1 T-TCAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
** * * ** * *
79158181 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA
1 TTCA-GATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
* * *
79158224 -TCAGGTATTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
1 TTCAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
* *
79158268 TTGCAGATCTTACCTCTCTGAGGTTACAGCG
1 TT-CAGATCTTATCTCCCTGAGGTTACAGCG
79158299 AAGCAGATTA
Statistics
Matches: 254, Mismatches: 55, Indels: 46
0.72 0.15 0.13
Matches are distributed among these distances:
40 1 0.00
41 57 0.22
42 10 0.04
43 59 0.23
44 60 0.24
45 5 0.02
46 62 0.24
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (45 bp):
TTCAGATCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAA
Found at i:79158121 original size:174 final size:174
Alignment explanation
Indices: 79157918--79158393 Score: 835
Period size: 174 Copynumber: 2.7 Consensus size: 174
79157908 ATAGGTTGGA
* *
79157918 AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTG
1 AATTGCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
79157983 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
*
79158048 CATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAG
131 CATCAGGTATTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAG
*
79158092 AATTGCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTG
1 AATTGCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
79158157 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
*
79158222 CATCAGGTATTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAG
131 CATCAGGTATTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAG
* * * **
79158266 AATTGCAGATCTTACCTCTCTGAGGTTACAGCGAAGCAGATTAAAGACATAATCCTATCTCCCTG
1 AATTGCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
* **
79158331 AAGTTACAGTGGAGCGGATTAAAATAAAGAATCTTATCTCTCTGAAGTGGCAGTAGAGTAGAT
66 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
79158394 TACGTCCAAG
Statistics
Matches: 288, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 288 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (174 bp):
AATTGCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTG
AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
CATCAGGTATTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAG
Found at i:79158394 original size:87 final size:85
Alignment explanation
Indices: 79157924--79158430 Score: 364
Period size: 87 Copynumber: 5.8 Consensus size: 85
79157914 TGGAAATTTC
* * * * *
79157924 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT-TAAGACATAATCCTATCTCCCTGAAGTTA
79157989 CAGTGGAGCGGATTAAAATAA
65 CAGTGGAGCGGATTAAAATAA
* * * *
79158010 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-T-CG-CATCAGGTCTTATCTCCCTGAGGT
1 A-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTAAGACAT-A-ATCCTATCTCCCTGAAGT
* ** ** **
79158072 TACAGCGGAGTAGACCGAAGAATTGC
63 TACAGTGGAGCGGA-TTAA-AA-TAA
* * ** * * *
79158098 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT-TAAGACATAATCCTATCTCCCTGAAGTTA
79158163 CAGTGGAGCGGATTAAAATAA
65 CAGTGGAGCGGATTAAAATAA
* * ** * *
79158184 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-T-CG-CATCAGGTATTATTTCCCTGAGGT
1 A-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTAAGACAT-A-ATCCTATCTCCCTGAAGT
* ** ** **
79158246 TACAGCGGAGTAGACCGAAGAATTGC
63 TACAGTGGAGCGGA-TTAA-AA-TAA
* * * *
79158272 AGATCTTACCTCTCTGAGGTTACAG-CGAAGCAGATTAAAGACATAATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCTCTGAAGTTACAGTAG-AGTAGATT-AAGACATAATCCTATCTCCCTGAAGTT
79158336 ACAGTGGAGCGGATTAAAATAA
64 ACAGTGGAGCGGATTAAAATAA
** * * * **
79158358 AGAATCTTATCTCTCTGAAGTGGCAGTAGAGTAGATTACGTCCA-AGTCAAATCTCCCTGAAGTT
1 AG-ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTAAG-ACATAATCCTATCTCCCTGAAGTT
*
79158422 GCAGTGGAG
64 ACAGTGGAG
79158431 TAAGTTAAAA
Statistics
Matches: 314, Mismatches: 83, Indels: 48
0.71 0.19 0.11
Matches are distributed among these distances:
83 5 0.02
84 4 0.01
85 50 0.16
86 38 0.12
87 148 0.47
88 10 0.03
89 50 0.16
90 4 0.01
91 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (85 bp):
AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTAAGACATAATCCTATCTCCCTGAAGTTAC
AGTGGAGCGGATTAAAATAA
Found at i:79160230 original size:12 final size:12
Alignment explanation
Indices: 79160210--79160270 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
79160200 TTATAATTCT
79160210 TATACATACATA
1 TATACATACATA
* *
79160222 TATATATACGTA
1 TATACATACATA
*
79160234 TAGACATACATA
1 TATACATACATA
* * *
79160246 TTTTCATTATATA
1 TATACA-TACATA
*
79160259 TATACCTACATA
1 TATACATACATA
79160271 GTTTTTTTTG
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
12 27 0.77
13 8 0.23
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (12 bp):
TATACATACATA
Found at i:79160502 original size:15 final size:15
Alignment explanation
Indices: 79160482--79160515 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
79160472 TTTATTTTTG
* *
79160482 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
79160497 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
79160512 TTAT
1 TTAT
79160516 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:79162648 original size:16 final size:15
Alignment explanation
Indices: 79162626--79162662 Score: 65
Period size: 16 Copynumber: 2.4 Consensus size: 15
79162616 ATCGAATTAA
79162626 TTGATTGAATTTATT
1 TTGATTGAATTTATT
79162641 TGTGATTGAATTTATT
1 T-TGATTGAATTTATT
79162657 TTGATT
1 TTGATT
79162663 AGAGGTCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.59
Consensus pattern (15 bp):
TTGATTGAATTTATT
Found at i:79162688 original size:12 final size:12
Alignment explanation
Indices: 79162671--79162705 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
79162661 TTAGAGGTCA
79162671 GTTAATGATTTT
1 GTTAATGATTTT
79162683 GTTAATGATTTT
1 GTTAATGATTTT
* *
79162695 TTTAATAATTT
1 GTTAATGATTT
79162706 AAAAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (12 bp):
GTTAATGATTTT
Found at i:79166065 original size:23 final size:23
Alignment explanation
Indices: 79166015--79166065 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
79166005 TCACGTCGAT
*
79166015 AAATAATTTAAAAATTAAAAAAA
1 AAATAATTCAAAAATTAAAAAAA
* *
79166038 TAATAA-TCAAAATTTAAAATAAA
1 AAATAATTCAAAAATTAAAA-AAA
79166061 AAATA
1 AAATA
79166066 GTTTATATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
AAATAATTCAAAAATTAAAAAAA
Found at i:79176239 original size:19 final size:19
Alignment explanation
Indices: 79176215--79176255 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
79176205 AAAAATAAAA
* * *
79176215 TTTTTATATTTTTATACTT
1 TTTTTATAATTTAATAATT
79176234 TTTTTATAATTTAATAATT
1 TTTTTATAATTTAATAATT
79176253 TTT
1 TTT
79176256 AATTTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTATAATTTAATAATT
Found at i:79177730 original size:146 final size:150
Alignment explanation
Indices: 79177506--79177786 Score: 419
Period size: 146 Copynumber: 1.9 Consensus size: 150
79177496 TTAAAAAAAA
* *
79177506 TTTGGTGCTAGCCTGTCAATGGCTGGCACCAGATACGAGTATTTAAAAATATTTTTTTTTGTTTT
1 TTTGGTGCTAGCCTGTCAATAGCAGGCACCAGATACGAGTATTT---AATATTTTTTTTTGTTTT
* * * *
79177571 GGCCTTCTAATGGCTGGCACCAGTACG-AAAAAAAATTCAAACT-TTTTTAGTGTTGGCCTGTCA
63 GGCCTTCTAATGGCCGACACCAGCACGAAAAAAAAATTCAAA-TATTCTTAGTGTTGGCCTGTCA
79177634 ATGGCCGACAAAAAATTTAAATTT
127 ATGGCCGACAAAAAATTTAAATTT
*
79177658 TTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAG-ATTT-A-ATTTTTTTTTGTTTTGGC
1 TTTGGTGCTAGCCTGTCAATAGCAGGCACCAGATACGAGTATTTAATATTTTTTTTTGTTTTGGC
*
79177720 CTTCTAATGGCCGACACCAGCACGAAAAAAAAATTCAAATATTCTTGGTGTTGGCCTGTCAATGG
66 CTTCTAATGGCCGACACCAGCACGAAAAAAAAATTCAAATATTCTTAGTGTTGGCCTGTCAATGG
79177785 CC
131 CC
79177787 AGCACCAGGT
Statistics
Matches: 119, Mismatches: 8, Indels: 9
0.88 0.06 0.07
Matches are distributed among these distances:
146 40 0.34
147 39 0.33
151 4 0.03
152 36 0.30
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (150 bp):
TTTGGTGCTAGCCTGTCAATAGCAGGCACCAGATACGAGTATTTAATATTTTTTTTTGTTTTGGC
CTTCTAATGGCCGACACCAGCACGAAAAAAAAATTCAAATATTCTTAGTGTTGGCCTGTCAATGG
CCGACAAAAAATTTAAATTT
Found at i:79177814 original size:105 final size:104
Alignment explanation
Indices: 79177643--79177867 Score: 305
Period size: 105 Copynumber: 2.1 Consensus size: 104
79177633 AATGGCCGAC
* *
79177643 AAAAAATTTAAATTTTTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAGATTTAAT-TTT
1 AAAAAATTCAAATTTCTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAGATTTAATATTT
79177707 TTTTTGTTTTGGCCTTCTAATGGCC-GACACCAGCACGAAA
66 TTTTTGTTTTGGCCTTCTAATGGCCTG-CACCAGCAC-AAA
* * * *
79177747 AAAAAATTCAAATATTCTTGGTGTTGGCCTGTCAATGGCCA-GCACCAGGTACGAGTTTTTAA-A
1 AAAAAATTCAAAT-TTCTTGGTGCTAGCCTGTCAATAG-CAGGCACCAGGTACGAG-ATTTAATA
*
79177810 TTTTTTTTTGTTTTGGCCTTCTAATGGCCTGCACCAGTACAAA
63 -TTTTTTTTGTTTTGGCCTTCTAATGGCCTGCACCAGCACAAA
79177853 AAAAAATTCAAATTT
1 AAAAAATTCAAATTT
79177868 TTTTTTCTAG
Statistics
Matches: 108, Mismatches: 7, Indels: 11
0.86 0.06 0.09
Matches are distributed among these distances:
104 12 0.11
105 36 0.33
106 23 0.21
107 36 0.33
108 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (104 bp):
AAAAAATTCAAATTTCTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAGATTTAATATTT
TTTTTGTTTTGGCCTTCTAATGGCCTGCACCAGCACAAA
Found at i:79177858 original size:107 final size:103
Alignment explanation
Indices: 79177643--79177867 Score: 319
Period size: 107 Copynumber: 2.1 Consensus size: 103
79177633 AATGGCCGAC
* *
79177643 AAAAAATTTAAATTTTTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAGATTTAATTTTT
1 AAAAAATTCAAATTTCTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAGATTTAATTTTT
79177708 TTTTGTTTTGGCCTTCTAATGGCCGACACCAGCACGAAA
66 TTTTGTTTTGGCCTTCTAATGGCCGACACCAGCAC-AAA
* * * *
79177747 AAAAAATTCAAATATTCTTGGTGTTGGCCTGTCAATGGCCA-GCACCAGGTACGAGTTTTTAAAT
1 AAAAAATTCAAAT-TTCTTGGTGCTAGCCTGTCAATAG-CAGGCACCAGGTACGAG-ATTT-AAT
*
79177811 TTTTTTTTGTTTTGGCCTTCTAATGGCCTG-CACCAGTACAAA
62 TTTTTTTTGTTTTGGCCTTCTAATGGCC-GACACCAGCACAAA
79177853 AAAAAATTCAAATTT
1 AAAAAATTCAAATTT
79177868 TTTTTTCTAG
Statistics
Matches: 109, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
104 12 0.11
105 36 0.33
106 21 0.19
107 39 0.36
108 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (103 bp):
AAAAAATTCAAATTTCTTGGTGCTAGCCTGTCAATAGCAGGCACCAGGTACGAGATTTAATTTTT
TTTTGTTTTGGCCTTCTAATGGCCGACACCAGCACAAA
Found at i:79178748 original size:17 final size:18
Alignment explanation
Indices: 79178712--79178749 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
79178702 AGTGCATATA
*
79178712 ATTTTTTTTGAATTTTAT
1 ATTTTTTTTGAATTTAAT
*
79178730 ATTTTTTTTGTA-TTAAT
1 ATTTTTTTTGAATTTAAT
79178747 ATT
1 ATT
79178750 GTAGAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (18 bp):
ATTTTTTTTGAATTTAAT
Found at i:79188360 original size:10 final size:10
Alignment explanation
Indices: 79188345--79188372 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
79188335 ACGATTCAAA
79188345 GAAGAAGATG
1 GAAGAAGATG
79188355 GAAGAAGATG
1 GAAGAAGATG
79188365 GAAGAAGA
1 GAAGAAGA
79188373 AAAATGAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.39, T:0.07
Consensus pattern (10 bp):
GAAGAAGATG
Found at i:79193981 original size:20 final size:19
Alignment explanation
Indices: 79193942--79193982 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
79193932 AATTTGTTTG
* *
79193942 TTTAGTTAATTAACCTTAA
1 TTTAGTTAAATAAACTTAA
79193961 TTTAGTTAAATAATACTTAA
1 TTTAGTTAAATAA-ACTTAA
79193981 TT
1 TT
79193983 AATTAAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTAGTTAAATAAACTTAA
Found at i:79194010 original size:14 final size:14
Alignment explanation
Indices: 79193991--79194023 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
79193981 TTAATTAAGT
79193991 TAATAACCATATGA
1 TAATAACCATATGA
*
79194005 TAATAACCATGTGA
1 TAATAACCATATGA
79194019 TAATA
1 TAATA
79194024 CTGTCCACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (14 bp):
TAATAACCATATGA
Found at i:79195954 original size:30 final size:30
Alignment explanation
Indices: 79195918--79195977 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
79195908 AATTACATTC
79195918 AATTCAATGAGACCTACTAATTACAATGAT
1 AATTCAATGAGACCTACTAATTACAATGAT
79195948 AATTCAATGAGACCTACTAATTACAATGAT
1 AATTCAATGAGACCTACTAATTACAATGAT
79195978 TATTGATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (30 bp):
AATTCAATGAGACCTACTAATTACAATGAT
Found at i:79196015 original size:19 final size:20
Alignment explanation
Indices: 79195991--79196033 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
79195981 TGATTTAGTG
79195991 TAATTACAATGAGACCTA-C
1 TAATTACAATGAGACCTACC
79196010 TAATTACAATGAGACCTACC
1 TAATTACAATGAGACCTACC
79196030 TAAT
1 TAAT
79196034 AATTAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (20 bp):
TAATTACAATGAGACCTACC
Found at i:79196822 original size:23 final size:23
Alignment explanation
Indices: 79196778--79196824 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
79196768 AACATGTTAA
* *
79196778 ATTAATAAATTTTGATGAAAATT
1 ATTAATAAATATTAATGAAAATT
79196801 ATTAAT-AATATTAATGATAAATT
1 ATTAATAAATATTAATGA-AAATT
79196824 A
1 A
79196825 AAAATTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (23 bp):
ATTAATAAATATTAATGAAAATT
Found at i:79204974 original size:20 final size:20
Alignment explanation
Indices: 79204942--79204979 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79204932 TGTTTCACAT
79204942 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
79204962 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
79204980 AATTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:79205490 original size:18 final size:18
Alignment explanation
Indices: 79205469--79205507 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
79205459 TACTTTCCTC
79205469 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
79205487 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
79205505 TTT
1 TTT
79205508 TTTTTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:79205676 original size:39 final size:38
Alignment explanation
Indices: 79205609--79205702 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 38
79205599 ACCAATATGG
*
79205609 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAA-AGTTGA
* * *
79205648 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAAAGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAAAGTTGA
* * *
79205686 TACCTAGTACCTCATCG
1 CACCCAGTGCCTCATCG
79205703 AATCTATCCG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 18 0.39
39 25 0.54
40 3 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAAAGTTGA
Found at i:79206666 original size:12 final size:12
Alignment explanation
Indices: 79206649--79206677 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
79206639 CTCTTTTATC
79206649 TTTCTTTCCCTT
1 TTTCTTTCCCTT
79206661 TTTCTTTCCCTT
1 TTTCTTTCCCTT
79206673 TTTCT
1 TTTCT
79206678 CCCCTGCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTCTTTCCCTT
Found at i:79206668 original size:16 final size:17
Alignment explanation
Indices: 79206636--79206668 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79206626 AATCCTCAAT
*
79206636 TTTCTCTTTTATCTTTC
1 TTTCCCTTTTATCTTTC
79206653 TTTCCCTTTT-TCTTTC
1 TTTCCCTTTTATCTTTC
79206669 CCTTTTTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTCCCTTTTATCTTTC
Found at i:79208730 original size:16 final size:18
Alignment explanation
Indices: 79208709--79208746 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
79208699 GCAACGAACC
79208709 ATTTTGCT-AAAATC-AT
1 ATTTTGCTAAAAATCAAT
79208725 ATTTTGCTAAAAATCAAT
1 ATTTTGCTAAAAATCAAT
79208743 ATTT
1 ATTT
79208747 CATGTACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 6 0.30
18 6 0.30
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (18 bp):
ATTTTGCTAAAAATCAAT
Found at i:79209863 original size:76 final size:76
Alignment explanation
Indices: 79209770--79209919 Score: 282
Period size: 76 Copynumber: 2.0 Consensus size: 76
79209760 GTTTCGACGG
*
79209770 ATTTAGTCTCTCGTTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
1 ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
79209835 TGTTTAGGCGA
66 TGTTTAGGCGA
*
79209846 ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTCACATAAATCACAAATCAAATAATAATATTT
1 ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
79209911 TGTTTAGGC
66 TGTTTAGGC
79209920 ATTATTAATG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (76 bp):
ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
TGTTTAGGCGA
Found at i:79210441 original size:13 final size:13
Alignment explanation
Indices: 79210423--79210448 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79210413 AGGAGGAGAA
79210423 AAGAAGAAAACGG
1 AAGAAGAAAACGG
79210436 AAGAAGAAAACGG
1 AAGAAGAAAACGG
79210449 TGAAAAACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAACGG
Found at i:79215776 original size:64 final size:64
Alignment explanation
Indices: 79215696--79215823 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
79215686 GTTATTTGGT
*
79215696 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAAGATAATGTTATATGAAGCAACGGG
1 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAACATAATGTTATATGAAGCAACGGG
*
79215760 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGACCATAATGTTATATGAAGCAACGGG
1 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAACATAATGTTATATGAAGCAACGGG
79215824 ATCATGTTAC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (64 bp):
TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAACATAATGTTATATGAAGCAACGGG
Found at i:79218656 original size:21 final size:21
Alignment explanation
Indices: 79218600--79218662 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
79218590 CTTTGGGGGA
*
79218600 ATGGGCGGCATGGGCGACATG
1 ATGGGCGGCATGGGTGACATG
79218621 ATGGGCGGCATGGGTGACATG
1 ATGGGCGGCATGGGTGACATG
* *
79218642 ATGGGTGGCATGGGTGGCATG
1 ATGGGCGGCATGGGTGACATG
79218663 GATGAGTTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.17, C:0.14, G:0.49, T:0.19
Consensus pattern (21 bp):
ATGGGCGGCATGGGTGACATG
Found at i:79220024 original size:23 final size:23
Alignment explanation
Indices: 79219994--79220042 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
79219984 TTCAACTCGA
*
79219994 ACTTATTCGAGTTTGCTT-GAATT
1 ACTTATTCAAG-TTGCTTCGAATT
*
79220017 ACTTATTCAAGTTGGTTCGAATT
1 ACTTATTCAAGTTGCTTCGAATT
79220040 ACT
1 ACT
79220043 CGAACTCGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.45
Consensus pattern (23 bp):
ACTTATTCAAGTTGCTTCGAATT
Found at i:79227294 original size:26 final size:26
Alignment explanation
Indices: 79227264--79227314 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
79227254 GTTTATCTTG
79227264 AAACTTTATTTCCTTTTATTTTTTTC
1 AAACTTTATTTCCTTTTATTTTTTTC
79227290 AAACTTTATTTCCTTTTATTTTTTT
1 AAACTTTATTTCCTTTTATTTTTTT
79227315 TCATTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.67
Consensus pattern (26 bp):
AAACTTTATTTCCTTTTATTTTTTTC
Found at i:79228787 original size:18 final size:17
Alignment explanation
Indices: 79228760--79228795 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
79228750 TAAATAAGTT
79228760 AATTAGGATTAAATTGA
1 AATTAGGATTAAATTGA
*
79228777 AATTGAGGATTGAATTGA
1 AATT-AGGATTAAATTGA
79228795 A
1 A
79228796 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (17 bp):
AATTAGGATTAAATTGA
Found at i:79229241 original size:44 final size:44
Alignment explanation
Indices: 79229175--79229260 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
79229165 TGTACATGGA
79229175 TACTTCGACCTTGAGTCAATGAGGCACTA-ATAGTGTCGTACTGT
1 TACTTCGACCTTGAGTCAATGAGGCACTATAT-GTGTCGTACTGT
* * *
79229219 TACTTCGA-CTTCGTGTCGATGAGGCACTTTATGTGTCGTACT
1 TACTTCGACCTT-GAGTCAATGAGGCACTATATGTGTCGTACT
79229261 ATTTCTGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 3 0.08
44 32 0.86
45 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (44 bp):
TACTTCGACCTTGAGTCAATGAGGCACTATATGTGTCGTACTGT
Found at i:79230922 original size:15 final size:15
Alignment explanation
Indices: 79230902--79230931 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79230892 GTCTAACGAA
79230902 AATATTGAAGAAACT
1 AATATTGAAGAAACT
79230917 AATATTGAAGAAACT
1 AATATTGAAGAAACT
79230932 GGTCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (15 bp):
AATATTGAAGAAACT
Found at i:79235081 original size:104 final size:103
Alignment explanation
Indices: 79234901--79235123 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
79234891 TGTATATAAA
** * *
79234901 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
79234966 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
79235005 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
79235069 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
79235108 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
79235124 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 21 0.19
104 90 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:79235175 original size:70 final size:71
Alignment explanation
Indices: 79235043--79235192 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
79235033 TCATTGGTGG
* *
79235043 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
79235108 AGGGGT
66 AGGGGT
***
79235114 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
79235178 AGGGGT
66 AGGGGT
79235184 TGCTAAGTG
1 TGCTAAGTG
79235193 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:79235188 original size:26 final size:26
Alignment explanation
Indices: 79235153--79235204 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
79235143 AAATGAAAAG
* *
79235153 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
79235179 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
79235205 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:79238436 original size:14 final size:16
Alignment explanation
Indices: 79238417--79238449 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
79238407 GAGTTTGGAT
79238417 TTTTATT-AATT-TTA
1 TTTTATTAAATTATTA
79238431 TTTTATTAAATTATTA
1 TTTTATTAAATTATTA
79238447 TTT
1 TTT
79238450 ATTTTGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATTAAATTATTA
Found at i:79252863 original size:14 final size:14
Alignment explanation
Indices: 79252844--79252871 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79252834 TCCAATCAAA
79252844 AACTCATTGAGCAT
1 AACTCATTGAGCAT
79252858 AACTCATTGAGCAT
1 AACTCATTGAGCAT
79252872 TACGTAGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
AACTCATTGAGCAT
Found at i:79263752 original size:47 final size:47
Alignment explanation
Indices: 79263683--79263779 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
79263673 GCTTCCAATC
*
79263683 CAAAAGTAAAGCCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
1 CAAAAGTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
*
79263730 CAAAATTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
1 CAAAAGTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
79263777 CAA
1 CAA
79263780 TATTCGTCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (47 bp):
CAAAAGTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
Found at i:79268652 original size:151 final size:151
Alignment explanation
Indices: 79268378--79268678 Score: 602
Period size: 151 Copynumber: 2.0 Consensus size: 151
79268368 GTTGTTAGGT
79268378 AAAGTTCTCAAGACATACAGAATTGACTTCTAGAAATTCCCATGGGCAAGTTTGGCGTTTACCAA
1 AAAGTTCTCAAGACATACAGAATTGACTTCTAGAAATTCCCATGGGCAAGTTTGGCGTTTACCAA
79268443 ATAGACCAATAAGCTCATTTAGATCTTTTCTAATGGAAAACTTCCAGTGTGTTCAAGTTCAAGTC
66 ATAGACCAATAAGCTCATTTAGATCTTTTCTAATGGAAAACTTCCAGTGTGTTCAAGTTCAAGTC
79268508 TCCTAACTAAACTAGCAATCA
131 TCCTAACTAAACTAGCAATCA
79268529 AAAGTTCTCAAGACATACAGAATTGACTTCTAGAAATTCCCATGGGCAAGTTTGGCGTTTACCAA
1 AAAGTTCTCAAGACATACAGAATTGACTTCTAGAAATTCCCATGGGCAAGTTTGGCGTTTACCAA
79268594 ATAGACCAATAAGCTCATTTAGATCTTTTCTAATGGAAAACTTCCAGTGTGTTCAAGTTCAAGTC
66 ATAGACCAATAAGCTCATTTAGATCTTTTCTAATGGAAAACTTCCAGTGTGTTCAAGTTCAAGTC
79268659 TCCTAACTAAACTAGCAATC
131 TCCTAACTAAACTAGCAATC
79268679 GAAATTGACC
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 150 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (151 bp):
AAAGTTCTCAAGACATACAGAATTGACTTCTAGAAATTCCCATGGGCAAGTTTGGCGTTTACCAA
ATAGACCAATAAGCTCATTTAGATCTTTTCTAATGGAAAACTTCCAGTGTGTTCAAGTTCAAGTC
TCCTAACTAAACTAGCAATCA
Found at i:79270453 original size:17 final size:18
Alignment explanation
Indices: 79270414--79270454 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
79270404 ATCGAGTTAA
79270414 TAATTAAATCGATTAAAT
1 TAATTAAATCGATTAAAT
* *
79270432 T-ATTAAAT-TATTAATT
1 TAATTAAATCGATTAAAT
79270448 TAATTAA
1 TAATTAA
79270455 TCTAATCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 7 0.35
17 12 0.60
18 1 0.05
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
TAATTAAATCGATTAAAT
Found at i:79272590 original size:16 final size:16
Alignment explanation
Indices: 79272559--79272595 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
79272549 ATGTGAAGAA
79272559 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
79272575 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
79272591 TATTA
1 TATTA
79272596 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:79272655 original size:29 final size:30
Alignment explanation
Indices: 79272590--79272655 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
79272580 TTAAAATTTA
79272590 TTATTAAAATAAAATTGAGATATTAAATAAT
1 TTATTAAAATAAAATT-AGATATTAAATAAT
*
79272621 TTATTAAAATAATAATT-TATATT-AATAAT
1 TTATTAAAATAA-AATTAGATATTAAATAAT
79272650 TTATTA
1 TTATTA
79272656 TATAACTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 12 0.36
30 5 0.15
31 12 0.36
32 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (30 bp):
TTATTAAAATAAAATTAGATATTAAATAAT
Found at i:79272656 original size:16 final size:16
Alignment explanation
Indices: 79272609--79272658 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
79272599 TAAAATTGAG
79272609 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
* *
79272626 AAAATAATAA--T-TT
1 ATATTAATAATTTATT
79272639 ATATTAATAATTTATT
1 ATATTAATAATTTATT
79272655 ATAT
1 ATAT
79272659 AACTAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
15 1 0.04
16 11 0.42
17 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:79284628 original size:12 final size:12
Alignment explanation
Indices: 79284611--79284643 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
79284601 CGGCCAGCCC
79284611 ATATTAATTTTT
1 ATATTAATTTTT
79284623 ATATT-ATTTTT
1 ATATTAATTTTT
79284634 ATA-TAATTTT
1 ATATTAATTTT
79284644 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:79284801 original size:30 final size:30
Alignment explanation
Indices: 79284765--79284827 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
79284755 CAACTTAACA
79284765 AGCAAATGCCTCTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAACAAAATT
* *
79284795 AGCAAATGTCTTTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAACAAAATT
79284825 AGC
1 AGC
79284828 CATAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.25
Consensus pattern (30 bp):
AGCAAATGCCTCTAAAATAATAACAAAATT
Found at i:79284884 original size:22 final size:22
Alignment explanation
Indices: 79284858--79284906 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
79284848 ATATCCAAAC
79284858 AATAACAATAAAATAGTAGCAA
1 AATAACAATAAAATAGTAGCAA
* * * *
79284880 CATAATAGTAAAATGGTAGCAA
1 AATAACAATAAAATAGTAGCAA
79284902 AATAA
1 AATAA
79284907 TGAGAAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.20
Consensus pattern (22 bp):
AATAACAATAAAATAGTAGCAA
Found at i:79284907 original size:22 final size:23
Alignment explanation
Indices: 79284866--79284929 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
79284856 ACAATAACAA
*
79284866 TAAAATAGTAGCAACATAAT-AG
1 TAAAATAGTAGCAAAATAATGAG
*
79284888 TAAAATGGTAGCAAAATAATGAG
1 TAAAATAGTAGCAAAATAATGAG
*
79284911 -AAAATAATAAG-AAAATAAT
1 TAAAATAGT-AGCAAAATAAT
79284930 ATTAAAAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 32 0.89
23 4 0.11
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.22
Consensus pattern (23 bp):
TAAAATAGTAGCAAAATAATGAG
Found at i:79284936 original size:11 final size:11
Alignment explanation
Indices: 79284900--79284930 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
79284890 AAATGGTAGC
*
79284900 AAAATAATGAG
1 AAAATAATAAG
79284911 AAAATAATAAG
1 AAAATAATAAG
79284922 AAAATAATA
1 AAAATAATA
79284931 TTAAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (11 bp):
AAAATAATAAG
Found at i:79285192 original size:15 final size:16
Alignment explanation
Indices: 79285167--79285197 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
79285157 TTAATTTTTG
79285167 TTAATTTTGGTTAATT
1 TTAATTTTGGTTAATT
79285183 TTAA-TTTGGTTAATT
1 TTAATTTTGGTTAATT
79285198 CAGTTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (16 bp):
TTAATTTTGGTTAATT
Found at i:79287450 original size:20 final size:18
Alignment explanation
Indices: 79287346--79287498 Score: 68
Period size: 20 Copynumber: 8.3 Consensus size: 18
79287336 TTCAATTATG
79287346 ATTAAACTTAATCACTTTAAT
1 ATTAAA-TTAAT-A-TTTAAT
79287367 ATTAAATTAATA--TAAT
1 ATTAAATTAATATTTAAT
** * * * *
79287383 ATTTTATCTACTAGATAAAC
1 ATTAAAT-TAATA-TTTAAT
79287403 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
79287420 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAA-TA-TTTAAT
** *
79287440 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
79287459 ATTAAGATTAGTA-TTAA-
1 ATTAA-ATTAATATTTAAT
*
79287476 ATTAAATTAA-ATTAAAT
1 ATTAAATTAATATTTAAT
79287493 ATTAAA
1 ATTAAA
79287499 CTATTAAAAT
Statistics
Matches: 100, Mismatches: 19, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
15 1 0.01
16 16 0.16
17 26 0.26
18 4 0.04
19 15 0.15
20 32 0.32
21 6 0.06
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:79287480 original size:73 final size:73
Alignment explanation
Indices: 79287354--79287497 Score: 184
Period size: 73 Copynumber: 2.0 Consensus size: 73
79287344 TGATTAAACT
* * ** *
79287354 TAATCACTTTAATATTAAATTAATATAATATTTTATCTACTAGATAAACATTAAATTAAATTTAA
1 TAATCACTTTAATATTAAATTAATAAAATATATTATAGACTAGATAAACATTAAATTAAATTAAA
79287419 TATTAAGA
66 TATTAAGA
* * *
79287427 TAATTACTTTAATATTAAATTAATAAAATACTATTA-AGATTAGTATTAA-ATTAAATTAAATTA
1 TAATCACTTTAATATTAAATTAATAAAATA-TATTATAGACTAG-ATAAACATTAAATTAAATTA
79287490 AATATTAA
64 AATATTAA
79287498 ACTATTAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
73 53 0.87
74 8 0.13
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (73 bp):
TAATCACTTTAATATTAAATTAATAAAATATATTATAGACTAGATAAACATTAAATTAAATTAAA
TATTAAGA
Found at i:79290551 original size:40 final size:40
Alignment explanation
Indices: 79290486--79290597 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
79290476 ACTATGTTTG
* * *
79290486 GCACTTAGTGTGCG-ATTTGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGTGAATTAGA-ATAGCTTCGGATATATAAA
* ***
79290526 GCACTTAGTGTGTGAATTGGAATAGCTTCGGATATATGTG
1 GCACTTAGTGTGTGAATTAGAATAGCTTCGGATATATAAA
* *
79290566 GCACTAAGTGTGTGATATTAAAATAGCTTCGG
1 GCACTTAGTGTGTGA-ATTAGAATAGCTTCGG
79290598 TTTAATGTGA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 42 0.69
41 19 0.31
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGTGAATTAGAATAGCTTCGGATATATAAA
Found at i:79290606 original size:41 final size:43
Alignment explanation
Indices: 79290484--79290627 Score: 113
Period size: 40 Copynumber: 3.5 Consensus size: 43
79290474 CGACTATGTT
* * * * *
79290484 TGGCACTTAGTGTGCGAT-TTGAGATAGCTTCGGCTATA-T-A
1 TGGCACTAAGTGTGTGATATTAAAATAGCTTCGGATATAGTGA
** * **
79290524 AAGCACTTAGTGTGTGA-ATTGGAATAGCTTCGGATATA-TG-
1 TGGCACTAAGTGTGTGATATTAAAATAGCTTCGGATATAGTGA
*
79290564 TGGCACTAAGTGTGTGATATTAAAATAGCTTCGG-TTTAATGTGA
1 TGGCACTAAGTGTGTGATATTAAAATAGCTTCGGATAT-A-GTGA
*
79290608 TGGCACTAAGTGTGCGATAT
1 TGGCACTAAGTGTGTGATAT
79290628 AGTCATAGCT
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
40 48 0.57
41 15 0.18
43 2 0.02
44 19 0.23
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (43 bp):
TGGCACTAAGTGTGTGATATTAAAATAGCTTCGGATATAGTGA
Found at i:79295436 original size:46 final size:46
Alignment explanation
Indices: 79295369--79295544 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
79295359 TGTAACCCGC
* *
79295369 CCATAAGTGAACTCGGACTCAACTCAACGAACTCTGG-CGTTTGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGTAT
* *
79295415 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTCGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGTAT
* *** * * *
79295461 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGTAT
*
79295508 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79295545 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.02
46 71 0.65
47 36 0.33
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGTAT
Found at i:79295484 original size:93 final size:93
Alignment explanation
Indices: 79295377--79295548 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
79295367 GCCCATAAGT
* * *
79295377 GAACTCGGACTCAACTCAACGAACTCTGG-CGTTTGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAACTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79295441 ACGAGCTCGGATGCCTCGTTACATCTCTC
65 ACGAGCTCGGATGCCTCGTTACATCTCTC
**
79295470 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79295535 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79295549 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTCGTTACATCTCTC
Found at i:79297500 original size:15 final size:15
Alignment explanation
Indices: 79297446--79297525 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
79297436 CAAAGATAAC
*
79297446 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
79297460 AATAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
79297475 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
79297490 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
79297505 AATAGATCCAGGATA
1 AAGAAATCCAGAATA
79297520 AAGAAA
1 AAGAAA
79297526 CCCAAGATAT
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 8 0.16
15 42 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.15, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:79297534 original size:15 final size:15
Alignment explanation
Indices: 79297457--79297534 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
79297447 AGAAAACCGA
*
79297457 ATAAATAAATCCAAG
1 ATAAAGAAATCCAAG
* *
79297472 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
79297486 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
79297501 AATAAATAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79297517 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79297532 ATA
1 ATA
79297535 TGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 4 0.08
15 42 0.86
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.14, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79301235 original size:17 final size:18
Alignment explanation
Indices: 79301205--79301238 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
79301195 ATGTGGCCTA
79301205 CCCGTGTGGGCCCACACG
1 CCCGTGTGGGCCCACACG
79301223 CCCGTGT-GGCCCACAC
1 CCCGTGTGGGCCCACAC
79301239 AACCCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.12, C:0.47, G:0.29, T:0.12
Consensus pattern (18 bp):
CCCGTGTGGGCCCACACG
Found at i:79303537 original size:23 final size:22
Alignment explanation
Indices: 79303523--79303596 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 22
79303513 TTGAACCATA
*
79303523 AAAACCTTAAACCTTAAAACAT
1 AAAACCCTAAACCTTAAAACAT
* *
79303545 AAAACCCTAAACCCT-AAAC-C
1 AAAACCCTAAACCTTAAAACAT
* * * **
79303565 AAAACCATAAACATAAAAATTT
1 AAAACCCTAAACCTTAAAACAT
79303587 AAAACCCTAA
1 AAAACCCTAA
79303597 CCAAAAACCC
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
20 11 0.28
21 7 0.17
22 22 0.55
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.18
Consensus pattern (22 bp):
AAAACCCTAAACCTTAAAACAT
Found at i:79303552 original size:867 final size:862
Alignment explanation
Indices: 79301877--79303592 Score: 2758
Period size: 867 Copynumber: 2.0 Consensus size: 862
79301867 GAAACCGATT
* * *
79301877 ACCCAAATCCTACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCAGAACTACTGAAACTC
1 ACCCAAATCCCACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCACAACCACTGAAACTC
* * * * *
79301942 TAACAAAGAGCCGAGGAAAGTAAAACTCCCTCACTCGTGCAGGGATTCAATCACAGGACCTCCAG
66 TAACAAAGAGCCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCAATCACAAGACCTCCAG
*
79302007 TATATAAACACACTACTTAACCTCCAGACCAGCAGGCCCATTCTAATATGAAATTACAAGTAACT
131 TATACAAACACACTACTTAACCTCCAGACCAGCAGGCCCATTCTAATATGAAATTACAAGTAACT
*
79302072 TAATATAAGCCTGCTGACTAGATGTTAAGGCTTAATTCAGGAAAAAGCCTCCAGTCATGGCTTGA
196 TAATATAAGCCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCCTCCAGTCATGGCTTGA
* * * * *
79302137 ATTTAGGACCTCACACACACAGCCAAAACACTTAACCACTGGAGCGGATATTGTGTGCCAATGAA
261 ACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGTGCCAATAAA
*
79302202 TCACAGAGACATATTTAAAAACTTAGGGCGTTACTGAAAATTTCCAAACGAACAATTTTAACGAA
326 TCACAGAGACA-ATTTAAAAACTTAGGGCGTTACAGAAAATTTCCAAACGAACAATTTTAACGAA
*
79302267 ATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCGTTGAGTACATTGA
390 ATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCATTGAGTACATTGA
*
79302332 ATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAATTACTCTAGAAGGAATAT
455 ATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAACTACTCTAGAAGGAATAT
79302397 TTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAATTATACTCC
520 TTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAATTATACTCC
*
79302462 TACCTATTATCTGCAAAAAATGAGCTATCTATCTATATGAGACCTTATGTACAAGATATGACAGT
585 TACCTATTATCTGCAAAAAATAAGCTATCTATCTATATGAGACCTTATGTACAAGATATGACAGT
79302527 CTGTCATGACTATCCTATGTGTATGATACTGCAATGGGGAATTCACTCTCATGAGCAAAACCATA
650 CTGTCATGACTATCCTATGTGTATGATACTGCAATGGGGAATTCACTCTCATGAGCAAAACCATA
* * *
79302592 AACCCCCTAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATGGCCCTTCAATAATAA
715 AACCCCCAAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATAGCCCTTCAACAATAA
* *
79302657 AAACCTTAAACCTTAAAACCCTAAACCCTAAA-T-CC-AAACCATAAATATAAAAATTTAAAACC
780 AAACCTTAAACCTTAAAACCATAAACCCTAAACTACCAAAACCATAAACATAAAAATTTAAAACC
79302719 TTAAACCCTAAACTTTAA
845 TTAAACCCTAAACTTTAA
** *
79302737 ACCCAAATCCCACTAATTCTCATCCTAACCACCTGCTACCCAGAATCCCACAACCACTGGAACTC
1 ACCCAAATCCCACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCACAACCACTGAAACTC
* * *
79302802 TAACACAGAGTCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCGATCACAAGACCTCCAG
66 TAACAAAGAGCCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCAATCACAAGACCTCCAG
* *
79302867 TATACAAGCACACTACTTAACCTCCAGACTAGCAGGCCCATTCTAATATGAAATTACAAGTAACT
131 TATACAAACACACTACTTAACCTCCAGACCAGCAGGCCCATTCTAATATGAAATTACAAGTAACT
*
79302932 TAATATAAGCCTGCTGATTAGATGTTAAGGATTAATTCAGGAAAAAGCCAAAATTTGCCAAAGTC
196 TAATATAAGCCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCC------T-CC--AGTC
79302997 ATGGCTTGAACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGT
252 ATGGCTTGAACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGT
* *
79303062 GCCAATAAATCACAGAGAC-ATTTAAAAACTTGGGGCGTTACAGGAAATTTCCAAACGAACAATT
317 GCCAATAAATCACAGAGACAATTTAAAAACTTAGGGCGTTACAGAAAATTTCCAAACGAACAATT
* *
79303126 TTAACGAAATCTTTTAATTTCTTATTTTACTGTGTTCAACTCTATTTATTTCTATATCCATTGAG
382 TTAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCATTGAG
* *
79303191 TACATTGAATGTACAAAAATGGTTATAGCAGAGTTTCTGTTATTCGTATTAACAACTACTCTAGA
447 TACATTGAATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAACTACTCTAGA
* * *
79303256 AGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAGAT
512 AGGAATATTTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAAT
** * * * * *
79303321 TATGGTTCTACCTATTATCTGCCAAAAATAATCTATCTATTTATATGAGTCCTTATGTACAAGAT
577 TATACTCCTACCTATTATCTGCAAAAAATAAGCTATCTATCTATATGAGACCTTATGTACAAGAT
* * *
79303386 ATGACAGTCTGTCATGACTATCTTATGTGTATGATTCTGCAATGGGGAATTCACTCTCATGAGCC
642 ATGACAGTCTGTCATGACTATCCTATGTGTATGATACTGCAATGGGGAATTCACTCTCATGAGCA
* * *
79303451 AAACCCTAAACCCCCAAAACCATAACACTAACTCTAACACCCAAATCTTAAAACCATAGCCCTTG
707 AAACCATAAACCCCCAAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATAGCCCTTC
*
79303516 AACCATAAAAACCTTAAACCTTAAAA-CATAAAACCCTAAACCCTAAACCAAAACCATAAACATA
772 AACAATAAAAACCTTAAACCTTAAAACCAT-AAACCCTAAA--CT--ACCAAAACCATAAACATA
79303580 AAAATTTAAAACC
832 AAAATTTAAAACC
79303593 CTAACCAAAA
Statistics
Matches: 783, Mismatches: 56, Indels: 20
0.91 0.07 0.02
Matches are distributed among these distances:
860 225 0.29
866 3 0.00
867 443 0.57
869 83 0.11
870 1 0.00
873 2 0.00
874 26 0.03
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (862 bp):
ACCCAAATCCCACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCACAACCACTGAAACTC
TAACAAAGAGCCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCAATCACAAGACCTCCAG
TATACAAACACACTACTTAACCTCCAGACCAGCAGGCCCATTCTAATATGAAATTACAAGTAACT
TAATATAAGCCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCCTCCAGTCATGGCTTGA
ACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGTGCCAATAAA
TCACAGAGACAATTTAAAAACTTAGGGCGTTACAGAAAATTTCCAAACGAACAATTTTAACGAAA
TCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCATTGAGTACATTGAA
TGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAACTACTCTAGAAGGAATATT
TTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAATTATACTCCT
ACCTATTATCTGCAAAAAATAAGCTATCTATCTATATGAGACCTTATGTACAAGATATGACAGTC
TGTCATGACTATCCTATGTGTATGATACTGCAATGGGGAATTCACTCTCATGAGCAAAACCATAA
ACCCCCAAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATAGCCCTTCAACAATAAA
AACCTTAAACCTTAAAACCATAAACCCTAAACTACCAAAACCATAAACATAAAAATTTAAAACCT
TAAACCCTAAACTTTAA
Found at i:79303605 original size:13 final size:13
Alignment explanation
Indices: 79303587--79303611 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79303577 ATAAAAATTT
79303587 AAAACCCTAACCA
1 AAAACCCTAACCA
79303600 AAAACCCTAACC
1 AAAACCCTAACC
79303612 CTTAAACTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAACCCTAACCA
Found at i:79303759 original size:24 final size:22
Alignment explanation
Indices: 79303731--79303791 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
79303721 CTAAACCTAC
79303731 CCTTAAACCTTAAAAATAATAAAA
1 CCTTAAACCTTAAAAA-AAT-AAA
* * *
79303755 CCTTAAGCCTTTAAAACATAAA
1 CCTTAAACCTTAAAAAAATAAA
* *
79303777 CCCTAAACCATAAAA
1 CCTTAAACCTTAAAA
79303792 CCCTAACCCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 14 0.47
23 2 0.07
24 14 0.47
ACGTcount: A:0.52, C:0.23, G:0.02, T:0.23
Consensus pattern (22 bp):
CCTTAAACCTTAAAAAAATAAA
Done.