Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 237 of 311
Found at i:79938434 original size:20 final size:22
Alignment explanation
Indices: 79938387--79938435 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
79938377 TACATATAAA
*
79938387 ATATAATGTTAAAAGTATGTAT
1 ATATAATGTTAAAAGAATGTAT
**
79938409 GCATAATG-TAAAA-AATGTAT
1 ATATAATGTTAAAAGAATGTAT
79938429 ATATAAT
1 ATATAAT
79938436 ATAGTATTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 11 0.50
21 5 0.23
22 6 0.27
ACGTcount: A:0.49, C:0.02, G:0.12, T:0.37
Consensus pattern (22 bp):
ATATAATGTTAAAAGAATGTAT
Found at i:79941023 original size:21 final size:22
Alignment explanation
Indices: 79940993--79941053 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 22
79940983 TATATTTAAA
79940993 AAAT-AATATAATAATAAT-TT
1 AAATAAATATAATAATAATATT
79941013 AAATAAATATAATTATATTAATATT
1 AAATAAATATAA-TA-A-TAATATT
79941038 AAATAAA-ATAA-AATAA
1 AAATAAATATAATAATAA
79941054 AAATCTCACC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
20 7 0.19
21 8 0.22
22 3 0.08
23 1 0.03
24 8 0.22
25 9 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATAAATATAATAATAATATT
Found at i:79941034 original size:24 final size:24
Alignment explanation
Indices: 79940986--79941053 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
79940976 CTACCTATAT
79940986 ATTTAAA-AAATA-ATATAATAATA
1 ATTTAAATAAATATA-ATAATAATA
* *
79941009 ATTTAAATAAATATAATTATATTA
1 ATTTAAATAAATATAATAATAATA
79941033 ATATTAAATAAA-ATAA-AATAA
1 AT-TTAAATAAATATAATAATAA
79941054 AAATCTCACC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
23 10 0.26
24 18 0.47
25 10 0.26
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTTAAATAAATATAATAATAATA
Found at i:79943700 original size:21 final size:22
Alignment explanation
Indices: 79943674--79943730 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
79943664 GTGGGGGTCA
*
79943674 ACACGCCCATGTGAA-GTAGGC
1 ACACGCCCATGTGAAGGGAGGC
* *
79943695 ACACGCTCGTGTGAAGGGAGGC
1 ACACGCCCATGTGAAGGGAGGC
*
79943717 ACACGACCATGTGA
1 ACACGCCCATGTGA
79943731 CTATAACACA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 13 0.45
22 16 0.55
ACGTcount: A:0.28, C:0.26, G:0.32, T:0.14
Consensus pattern (22 bp):
ACACGCCCATGTGAAGGGAGGC
Found at i:79944783 original size:22 final size:23
Alignment explanation
Indices: 79944757--79944802 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
79944747 CAACCAAACC
79944757 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
79944779 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
79944802 A
1 A
79944803 CGTTATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:79947013 original size:10 final size:10
Alignment explanation
Indices: 79946998--79947028 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
79946988 CTGCTGGAAT
79946998 TGAAGAGAAA
1 TGAAGAGAAA
79947008 TGAAGAGAAA
1 TGAAGAGAAA
79947018 TGAAGAGAAA
1 TGAAGAGAAA
79947028 T
1 T
79947029 CTAGATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.29, T:0.13
Consensus pattern (10 bp):
TGAAGAGAAA
Found at i:79950653 original size:3 final size:3
Alignment explanation
Indices: 79950645--79950687 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
79950635 TACTTTAATT
79950645 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
79950688 GTGTTGTCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79951086 original size:21 final size:19
Alignment explanation
Indices: 79951050--79951093 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
79951040 TACTACGTTC
*
79951050 TATATATTTTTATATTATG
1 TATATATTTTAATATTATG
79951069 TATATATTTTAA-ATTAT-
1 TATATATTTTAATATTATG
79951086 TATATATT
1 TATATATT
79951094 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATTTTAATATTATG
Found at i:79951089 original size:17 final size:18
Alignment explanation
Indices: 79951050--79951093 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
79951040 TACTACGTTC
*
79951050 TATATATTTTTATATTATG
1 TATATA-TTTTAAATTATG
79951069 TATATATTTTAAATTAT-
1 TATATATTTTAAATTATG
79951086 TATATATT
1 TATATATT
79951094 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 10 0.42
19 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATATATTTTAAATTATG
Found at i:79951221 original size:16 final size:15
Alignment explanation
Indices: 79951189--79951233 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
79951179 ATTTCTAATA
79951189 TATGTATA-TATTA-
1 TATGTATATTATTAT
*
79951202 TATGTATTTTATATAT
1 TATGTATATTAT-TAT
79951218 TATGTATATTATTAT
1 TATGTATATTATTAT
79951233 T
1 T
79951234 TTTATCATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.26
14 3 0.11
15 6 0.22
16 11 0.41
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATGTATATTATTAT
Found at i:79951227 original size:18 final size:19
Alignment explanation
Indices: 79951193--79951232 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
79951183 CTAATATATG
*
79951193 TATATATTATATGTATT-T
1 TATATATTATATATATTAT
*
79951211 TATATATTATGTATATTAT
1 TATATATTATATATATTAT
79951230 TAT
1 TAT
79951233 TTTTATCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TATATATTATATATATTAT
Found at i:79962422 original size:17 final size:17
Alignment explanation
Indices: 79962400--79962434 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
79962390 ACATCGGTAC
79962400 AGACATCTACGGGAGCA
1 AGACATCTACGGGAGCA
79962417 AGACATCTACGGGAGCA
1 AGACATCTACGGGAGCA
79962434 A
1 A
79962435 CTCTTTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.23, G:0.29, T:0.11
Consensus pattern (17 bp):
AGACATCTACGGGAGCA
Found at i:79962917 original size:41 final size:45
Alignment explanation
Indices: 79962859--79962964 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 45
79962849 ATTATGCTTG
* *
79962859 AAAAAA-ATTAAGATGAAAACCCGAAAAAGG-G-CATCA-TAA-A
1 AAAAAAGATCAAGGTGAAAACCCGAAAAAGGTGTCATCATTAACA
* * * *
79962899 AAAAAAGATCAAGGTGAAAACCTGAAAAGGGTGTCTTGATTAACA
1 AAAAAAGATCAAGGTGAAAACCCGAAAAAGGTGTCATCATTAACA
79962944 AAAAAAGATCAAGGTGAAAAC
1 AAAAAAGATCAAGGTGAAAAC
79962965 TGTAACACCC
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
40 6 0.11
41 20 0.36
42 1 0.02
43 3 0.05
44 3 0.05
45 22 0.40
ACGTcount: A:0.55, C:0.11, G:0.19, T:0.15
Consensus pattern (45 bp):
AAAAAAGATCAAGGTGAAAACCCGAAAAAGGTGTCATCATTAACA
Found at i:79966628 original size:41 final size:42
Alignment explanation
Indices: 79966571--79966657 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
79966561 GAAGGCGATC
79966571 CCTTTTCTCTTTATGACAC-TGTTTTTACTATCATTGATTAA
1 CCTTTTCTCTTTATGACACTTGTTTTTACTATCATTGATTAA
*
79966612 CCTTTTCTCTTTATGACACTTTTTTTTACTATCATTGATTAA
1 CCTTTTCTCTTTATGACACTTGTTTTTACTATCATTGATTAA
79966654 CCTT
1 CCTT
79966658 CTTTGTTTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 19 0.43
42 25 0.57
ACGTcount: A:0.21, C:0.21, G:0.06, T:0.53
Consensus pattern (42 bp):
CCTTTTCTCTTTATGACACTTGTTTTTACTATCATTGATTAA
Found at i:79967266 original size:14 final size:15
Alignment explanation
Indices: 79967247--79967284 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
79967237 CGCTGAGGTA
79967247 TTTTCAAAAT-CTGT
1 TTTTCAAAATCCTGT
*
79967261 TTTTCAAATTCCTGT
1 TTTTCAAAATCCTGT
*
79967276 TTGTCAAAA
1 TTTTCAAAA
79967285 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (15 bp):
TTTTCAAAATCCTGT
Found at i:79967373 original size:88 final size:88
Alignment explanation
Indices: 79967193--79967405 Score: 272
Period size: 88 Copynumber: 2.4 Consensus size: 88
79967183 TTTTTTTTTT
* * * *
79967193 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAAAATC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAAGAATTTTCAAAATC
*
79967258 TGTTTTTCAAATTCCTGTTTGTC
66 TGCTTTTCAAATTCCTGTTTGTC
* ** *
79967281 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAAGAATTTTC-ATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAAGAATTTTCAAAATC
79967345 TGCTTTTC-AA-TCTCTGCTTT-TC
66 TGCTTTTCAAATTC-CTG-TTTGTC
*
79967367 AAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
79967406 TGGCTCACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
85 2 0.02
86 7 0.06
87 12 0.11
88 89 0.81
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAAGAATTTTCAAAATC
TGCTTTTCAAATTCCTGTTTGTC
Found at i:79967479 original size:78 final size:79
Alignment explanation
Indices: 79967361--79967508 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 79
79967351 TCAATCTCTG
* * * *
79967361 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTTG-GCTCACAT-GCTGAGGT
1 CTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCGAG-TCACATGGC-GAGAT
79967424 ATTTTCAGTTTTTATA
64 ATTTTCAGTTTTTATA
*
79967440 CTTTTC-AAAAAATCAACTTATATGGCGAGAGGTGAGTTGAGCCTCGAGTCACATGGCGAGATAT
1 CTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCGAGTCACATGGCGAGATAT
79967504 TTTCA
66 TTTCA
79967509 AATTCTGTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
78 53 0.85
79 9 0.15
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (79 bp):
CTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCGAGTCACATGGCGAGATAT
TTTCAGTTTTTATA
Found at i:79967524 original size:14 final size:14
Alignment explanation
Indices: 79967505--79967531 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79967495 GCGAGATATT
79967505 TTCAAATTCTGTTG
1 TTCAAATTCTGTTG
79967519 TTCAAATTCTGTT
1 TTCAAATTCTGTT
79967532 TTTAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTG
Found at i:79967625 original size:102 final size:103
Alignment explanation
Indices: 79967438--79967630 Score: 266
Period size: 102 Copynumber: 1.9 Consensus size: 103
79967428 TCAGTTTTTA
* *
79967438 TACTTTTCAAAAAATCAACTTATATGGCGAGAGGTGAGTTGAGCCTCGAGTCACATGGCGAGATA
1 TACTTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCGAGTCACATCGCGAGATA
79967503 TTTTCAAATTCTGTTGTTCAAATTCTGTTTTTAATTTC
66 TTTTCAAATTCTGTTGTTCAAATTCTGTTTTTAATTTC
* * * *
79967541 TACTTTTC-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GCTCACA-CGCTGAGG
1 TACTTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCGAG-TCACATCGC-GAGA
* * *
79967603 TATTTTCAATTTCTGTTTTTCAATTTCT
64 TATTTTCAAATTCTGTTGTTCAAATTCT
79967631 ACTTTTCAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
101 3 0.04
102 68 0.86
103 8 0.10
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (103 bp):
TACTTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCGAGTCACATCGCGAGATA
TTTTCAAATTCTGTTGTTCAAATTCTGTTTTTAATTTC
Found at i:79967636 original size:14 final size:14
Alignment explanation
Indices: 79967605--79967639 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
79967595 CGCTGAGGTA
**
79967605 TTTTCAATTTCTGT
1 TTTTCAATTTCTAC
79967619 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
79967633 TTTTCAA
1 TTTTCAA
79967640 AAAAAGTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:79967718 original size:90 final size:89
Alignment explanation
Indices: 79967523--79967981 Score: 321
Period size: 83 Copynumber: 5.2 Consensus size: 89
79967513 CTGTTGTTCA
*
79967523 AATT-CTGTTTTT-AATTTCTACTTTTC--CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
79967584 CTTGGCTCACACGCTGAGGTATTTTC
66 CTAGG--CACACGCTGAGGTATTTTC
*
79967610 AATTTCTGTTTTTCAATTTCTACTTTTCAAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAG
1 AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
*
79967675 CCTCAGG-GCACGCTGAGGTATTTTC
65 CCT-AGGCACACGCTGAGGTATTTTC
* * *
79967700 AGTTCCTGTTTTTCAATTTATATTTTTCAAAAAATAAAAAAAATCAACTCATATTGCGAGAGGTG
1 AATTCCTGTTTTTCAATTTCTACTTTTC--------AAAAAAATCAACTCATATTGCGAGAGGTG
** *
79967765 AGTTGAGCCCCGGGTCACATG-TCGAGGTATTTTC
58 AGTTGAG-CCTAGG-CACACGCT-GAGGTATTTTC
* * * * *
79967799 AAAAT-CTGCTTTT-AA-----A--TTTCAAAAAGACCAACTCATATGGCGAGAGGTGAGTTGAG
1 -AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * ** * *
79967855 CCTTGGCTTATATACTGAGCTATTTTT
65 CCTAGGC--ACACGCTGAGGTATTTTC
** * *** *
79967882 AATTTATG-TTTT-AATGTCTA-TTTT--TTTAAATCAACTCATATTGCGAGAGGTGAGTTTAGC
1 AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
79967942 CTCAGG-ACACGCTGAGGTATTTTA
66 CT-AGGCACACGCTGAGGTATTTTC
* *
79967966 AATTTCTGTTTGTCAA
1 AATTCCTGTTTTTCAA
79967982 AAATCAACTC
Statistics
Matches: 300, Mismatches: 40, Indels: 65
0.74 0.10 0.16
Matches are distributed among these distances:
81 1 0.00
82 13 0.04
83 47 0.16
84 21 0.07
85 3 0.01
86 33 0.11
87 7 0.02
88 11 0.04
89 14 0.05
90 41 0.14
91 8 0.03
92 32 0.11
93 3 0.01
97 31 0.10
98 12 0.04
99 21 0.07
100 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (89 bp):
AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTAGGCACACGCTGAGGTATTTTC
Found at i:79969790 original size:19 final size:20
Alignment explanation
Indices: 79969757--79969795 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
79969747 AATTGCCCAT
79969757 TTGACCCCTCATAGTTTCAC
1 TTGACCCCTCATAGTTTCAC
79969777 TTGACCCC-CATAGTTTCAC
1 TTGACCCCTCATAGTTTCAC
79969796 GCGTGTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.21, C:0.36, G:0.10, T:0.33
Consensus pattern (20 bp):
TTGACCCCTCATAGTTTCAC
Found at i:79977537 original size:30 final size:30
Alignment explanation
Indices: 79977503--79977576 Score: 139
Period size: 30 Copynumber: 2.5 Consensus size: 30
79977493 GTCAACGCCA
79977503 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
1 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
79977533 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
1 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
*
79977563 CCATCTGCATCTCC
1 CCATCGGCATCTCC
79977577 GGCTCCGGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.08, C:0.50, G:0.09, T:0.32
Consensus pattern (30 bp):
CCATCGGCATCTCCTTCTCCTTCCTCTCCG
Found at i:79978141 original size:15 final size:15
Alignment explanation
Indices: 79978123--79978152 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79978113 AAATTTTAAT
*
79978123 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
79978138 TTTTTATAATTTATA
1 TTTTTATAATTTATA
79978153 AAAGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:79978203 original size:30 final size:30
Alignment explanation
Indices: 79978134--79978203 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 30
79978124 TTTTATAGTT
* * *
79978134 TATATTTTTATAATTTATAAAAGATTAAAT
1 TATAATTTTATAATTTATAAAAGACTAAAA
*
79978164 TA-AATTTTTATAATTT-TAAGAGGACTAAAA
1 TATAA-TTTTATAATTTATAA-AAGACTAAAA
79978194 TATAATTTTA
1 TATAATTTTA
79978204 CTTTTATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 4 0.12
30 27 0.82
31 2 0.06
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.47
Consensus pattern (30 bp):
TATAATTTTATAATTTATAAAAGACTAAAA
Found at i:79979984 original size:18 final size:17
Alignment explanation
Indices: 79979957--79980002 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
79979947 AAGTTTAGGG
79979957 GGGGAA-TAAAAAGTTTT
1 GGGGAAGTAAAAA-TTTT
79979974 GGGGAAGT-AAAATTTT
1 GGGGAAGTAAAAATTTT
79979990 GAGGGAAAGTAAA
1 G-GGG-AAGTAAA
79980003 TAGGGGGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.20
17 13 0.52
18 5 0.20
19 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (17 bp):
GGGGAAGTAAAAATTTT
Found at i:79979995 original size:17 final size:18
Alignment explanation
Indices: 79979965--79980002 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
79979955 GGGGGGAATA
79979965 AAAAGTTTTGGGG-AAGT
1 AAAAGTTTTGGGGAAAGT
79979982 AAAA-TTTTGAGGGAAAGT
1 AAAAGTTTTG-GGGAAAGT
79980000 AAA
1 AAA
79980003 TAGGGGGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 7 0.37
18 7 0.37
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (18 bp):
AAAAGTTTTGGGGAAAGT
Found at i:79981503 original size:14 final size:14
Alignment explanation
Indices: 79981484--79981516 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
79981474 TGATGGAGGC
79981484 TGTAATTTT-TAATG
1 TGTAATTTTGT-ATG
79981498 TGTAATTTTGTATG
1 TGTAATTTTGTATG
79981512 TGTAA
1 TGTAA
79981517 CCTTAATAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (14 bp):
TGTAATTTTGTATG
Found at i:79988150 original size:17 final size:18
Alignment explanation
Indices: 79988118--79988152 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
79988108 ACTTTGAAAT
79988118 CAAGTTTAATTTCAAAAA
1 CAAGTTTAATTTCAAAAA
*
79988136 CAAGTTTTA-TTCAAAAA
1 CAAGTTTAATTTCAAAAA
79988153 TGTTATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (18 bp):
CAAGTTTAATTTCAAAAA
Found at i:79993030 original size:27 final size:27
Alignment explanation
Indices: 79992972--79993033 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
79992962 AATTTTAAAG
*
79992972 AAAATATATAAAAATTATATAATTTAT
1 AAAATATAAAAAAATTATATAATTTAT
*
79992999 TAAATATAAAATAAATTATA-AA-TTAT
1 AAAATATAAAA-AAATTATATAATTTAT
79993025 AAAAATATA
1 -AAAATATA
79993034 TGTATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.13
27 18 0.60
28 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
AAAATATAAAAAAATTATATAATTTAT
Found at i:79997940 original size:18 final size:18
Alignment explanation
Indices: 79997917--79997982 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
79997907 AAAATGTGAG
* *
79997917 AAATGATGTTCGCATTTT
1 AAATGATGTTCACATTTC
79997935 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
79997953 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
79997971 AAATGATGTTCA
1 AAATGATGTTCA
79997983 AATTGATGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:79998506 original size:72 final size:71
Alignment explanation
Indices: 79998406--79998577 Score: 229
Period size: 72 Copynumber: 2.4 Consensus size: 71
79998396 AACAAAAATC
* * * *
79998406 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
79998471 TCTAT-
66 TCTATA
* * * *
79998476 GTGTAATCTACTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGTTATTGAATTTATGTTCTACT
1 CT-AAAT-TACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
*
79998541 TATTTATA
64 TATCTATA
*
79998549 CTAAATTAGTTTTATCAATAGTTGTTTAT
1 CTAAATTACTTTTATCAATAGTTGTTTAT
79998578 ATATGATTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
70 1 0.01
71 23 0.27
72 61 0.71
73 1 0.01
ACGTcount: A:0.25, C:0.08, G:0.13, T:0.54
Consensus pattern (71 bp):
CTAAATTACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
TCTATA
Found at i:80000611 original size:13 final size:13
Alignment explanation
Indices: 80000593--80000627 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
80000583 CTTAAAATTT
*
80000593 TCAAAAGTACTTC
1 TCAAAAGCACTTC
80000606 TCAAAAGCACTTC
1 TCAAAAGCACTTC
80000619 TCAAAAGCA
1 TCAAAAGCA
80000628 TTGCCAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.23
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:80001935 original size:96 final size:96
Alignment explanation
Indices: 80001807--80001992 Score: 248
Period size: 96 Copynumber: 1.9 Consensus size: 96
80001797 AAAATGCTTC
* * ** * * * *
80001807 TTGCATGGGGCGTTTTCATCTGACATGACAGTGAAAATGCTTCTTATAGGATGTATTTTCAAGGC
1 TTGCATAGGGCATTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC
*
80001872 -TCATGTTTGACATGTCATAGGAAAACACTCA
66 AT-ATGTTTGACATGTCAGAGGAAAACACTCA
* * *
80001903 TTGCATAGGGCATTTTCATTTGACATGGCAGTGAAAACACTTCCTACAGGATGCGTTTTCAAGCC
1 TTGCATAGGGCATTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC
80001968 ATATGTTTGACATGTCAGAGGAAAA
66 ATATGTTTGACATGTCAGAGGAAAA
80001993 TGCCCCTTGT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
96 76 0.99
97 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (96 bp):
TTGCATAGGGCATTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC
ATATGTTTGACATGTCAGAGGAAAACACTCA
Found at i:80002015 original size:96 final size:95
Alignment explanation
Indices: 80001814--80002035 Score: 227
Period size: 96 Copynumber: 2.3 Consensus size: 95
80001804 TTCTTGCATG
** * * * *
80001814 GGGCGTTTTCATCTGACATGACAGTGAAAATGCTTCTTATAGGATGTATTTTCAAGGCTCATGTT
1 GGGCGTTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCCTCATGTT
* *
80001879 TGACATGTCATAGGAAAACACTCATTGCATA
66 TGACATGTCAGAGGAAAACACCCATTG-ATA
* * * *
80001910 GGGCATTTTCATTTGACATGGCAGTGAAAACACTTCCTACAGGATGCGTTTTCAAGCCAT-ATGT
1 GGGCGTTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC-TCATGT
** *
80001974 TTGACATGTCAGAGGAAAATGCCCCTTG-TA
65 TTGACATGTCAGAGGAAAACACCCATTGATA
*
80002004 GGAAGCGTTTTCA-CTGCCATG-CAGATGAAAAC
1 GG--GCGTTTTCATCTGACATGACAG-TGAAAAC
80002036 GCCCCCTGCA
Statistics
Matches: 104, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
94 7 0.07
95 13 0.12
96 83 0.80
97 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (95 bp):
GGGCGTTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCCTCATGTT
TGACATGTCAGAGGAAAACACCCATTGATA
Found at i:80003254 original size:18 final size:18
Alignment explanation
Indices: 80003231--80003265 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
80003221 TTTTTAAATG
80003231 GTGTTAGATAAAA-AAAAC
1 GTGTTAGA-AAAAGAAAAC
80003249 GTGTTAGAAAAAGAAAA
1 GTGTTAGAAAAAGAAAA
80003266 AAATCAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (18 bp):
GTGTTAGAAAAAGAAAAC
Found at i:80008971 original size:12 final size:12
Alignment explanation
Indices: 80008954--80008978 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80008944 AGCCTGAAGC
80008954 ATTTGAAGAATG
1 ATTTGAAGAATG
80008966 ATTTGAAGAATG
1 ATTTGAAGAATG
80008978 A
1 A
80008979 GGCAGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (12 bp):
ATTTGAAGAATG
Found at i:80013585 original size:9 final size:9
Alignment explanation
Indices: 80013571--80013598 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
80013561 CACGTTCACC
80013571 GGGTAAAAA
1 GGGTAAAAA
80013580 GGGTAAAAA
1 GGGTAAAAA
80013589 GGGTAAAAA
1 GGGTAAAAA
80013598 G
1 G
80013599 AAGAGTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.36, T:0.11
Consensus pattern (9 bp):
GGGTAAAAA
Found at i:80014057 original size:15 final size:16
Alignment explanation
Indices: 80014039--80014082 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
80014029 TCCTGGGAGA
*
80014039 CCAGCTCCTCCTCCT-
1 CCAGCACCTCCTCCTG
*
80014054 CCAGCACCACCTCCTG
1 CCAGCACCTCCTCCTG
80014070 CC-GCACCTCCTCC
1 CCAGCACCTCCTCC
80014083 CAAAGCAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.11, C:0.61, G:0.09, T:0.18
Consensus pattern (16 bp):
CCAGCACCTCCTCCTG
Found at i:80018458 original size:28 final size:28
Alignment explanation
Indices: 80018426--80018485 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
80018416 GTCATTATCA
80018426 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * * *
80018454 ACCCCATAAGTTATGAGACTTTTTCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
80018482 ACCC
1 ACCC
80018486 ATTAATATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:80022871 original size:32 final size:32
Alignment explanation
Indices: 80022834--80022895 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
80022824 GGTTGTAAGA
80022834 TCACTTGATCCAAGTAAAGACCCTTTCCGTTC
1 TCACTTGATCCAAGTAAAGACCCTTTCCGTTC
80022866 TCACTTGATCCAAGTAAAGACCCTTTCCGT
1 TCACTTGATCCAAGTAAAGACCCTTTCCGT
80022896 CCTCGGGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (32 bp):
TCACTTGATCCAAGTAAAGACCCTTTCCGTTC
Found at i:80023918 original size:28 final size:28
Alignment explanation
Indices: 80023878--80023937 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
80023868 GTCATTATCA
80023878 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
80023906 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
80023934 ACCC
1 ACCC
80023938 TATTAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:80024344 original size:16 final size:16
Alignment explanation
Indices: 80024325--80024360 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
80024315 CTTTTCCCCC
80024325 CTCTCCTTCCTCCCTT
1 CTCTCCTTCCTCCCTT
* *
80024341 CTCTCTTTTCTCCCTT
1 CTCTCCTTCCTCCCTT
80024357 CTCT
1 CTCT
80024361 TTCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
CTCTCCTTCCTCCCTT
Found at i:80037978 original size:74 final size:71
Alignment explanation
Indices: 80037784--80038134 Score: 373
Period size: 74 Copynumber: 4.9 Consensus size: 71
80037774 TTTGGGTACT
* * ** **
80037784 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCA
80037849 GGTCACACG
65 GGT--CACG
* **
80037858 CTGAGGTATTTTTAGTTTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
*
80037923 GTTACG
66 GTCACG
* * * **
80037929 TTGAGGTATTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATT--T-ATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCT
* *
80037994 CAAGACACG
63 CAGGTCACG
* * * *
80038003 TTGAGGTAATTTTAATTTATG-TTCCAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCGG
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
*
80038067 GGCACG
66 GTCACG
* ** * * *
80038073 CTGAGGTATTTTTAGTTTATGTTT-AGAAAATTGACTCATCTTGCGAAAGGTGAGTTAAGCCT
1 CTGAGGTATTTTTAATTTATGTTTCA-AAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCT
80038135 TTTAATTTCT
Statistics
Matches: 233, Mismatches: 39, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
70 60 0.26
71 53 0.23
72 1 0.00
73 41 0.18
74 78 0.33
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.34
Consensus pattern (71 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
GTCACG
Found at i:80038082 original size:144 final size:144
Alignment explanation
Indices: 80037784--80038096 Score: 423
Period size: 144 Copynumber: 2.2 Consensus size: 144
80037774 TTTGGGTACT
*
80037784 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * * **
80037849 GGTCACACGCTGAGGTATTTTTAGTTTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTC
66 AG-CACACGCTGAGGTAATTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTC
**
80037914 AAGCCTCAGGTTACG
130 AAGCCTCAGGGCACG
* * * **
80037929 TTGAGGTATTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATTCATG-T-TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
* *
80037994 CAAG-ACACGTTGAGGTAATTTTAATTTATG-TTCCAAAATCAACTCATATTGCGAGAGGTGAGT
64 CAAGCACACGCTGAGGTAATTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
*
80038057 CAAGCCTCGGGGCACG
129 CAAGCCTCAGGGCACG
* *
80038073 CTGAGGTATTTTTAGTTTATGTTT
1 CTGAGGTATTTTTAATTCATGTTT
80038097 AGAAAATTGA
Statistics
Matches: 146, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
142 2 0.01
143 1 0.01
144 60 0.41
145 41 0.28
146 1 0.01
147 41 0.28
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (144 bp):
CTGAGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGCACACGCTGAGGTAATTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTCA
AGCCTCAGGGCACG
Found at i:80038302 original size:88 final size:88
Alignment explanation
Indices: 80038153--80038320 Score: 248
Period size: 88 Copynumber: 1.9 Consensus size: 88
80038143 CTGTTTTTCA
* * * *
80038153 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACGTGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCATCGGCTCACATGCTGAGCTATTTTCAAATT
*
80038218 CTATTTTTCAAATTCCGTTCGTC
66 CTATTATTCAAATTCCGTTCGTC
* *
80038241 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCATCGGGTCACATG-TCGAGGTATTTTCAAAT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCATCGGCTCACATGCT-GAGCTATTTTCAAAT
*
80038305 TCTGTTATTCAAATTC
65 TCTATTATTCAAATTC
80038321 TGTTTTTAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 1 0.01
88 70 0.99
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (88 bp):
AAAATCAACTCATATTGCAAGAGATGAGTTGAGCATCGGCTCACATGCTGAGCTATTTTCAAATT
CTATTATTCAAATTCCGTTCGTC
Found at i:80038317 original size:14 final size:14
Alignment explanation
Indices: 80038298--80038324 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80038288 TCGAGGTATT
80038298 TTCAAATTCTGTTA
1 TTCAAATTCTGTTA
80038312 TTCAAATTCTGTT
1 TTCAAATTCTGTT
80038325 TTTAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTA
Found at i:80038628 original size:14 final size:14
Alignment explanation
Indices: 80038609--80038644 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
80038599 ACGCTGAGGT
* *
80038609 CTTTTCAATTTCTG
1 CTTTTCAATTCCTA
80038623 CTTTTCAATTCCTA
1 CTTTTCAATTCCTA
80038637 CTTTTCAA
1 CTTTTCAA
80038645 AAAAAATCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.19, C:0.25, G:0.03, T:0.53
Consensus pattern (14 bp):
CTTTTCAATTCCTA
Found at i:80038716 original size:13 final size:13
Alignment explanation
Indices: 80038698--80038722 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80038688 CACGCTGAGG
80038698 TATTTTCAATTTC
1 TATTTTCAATTTC
80038711 TATTTTCAATTT
1 TATTTTCAATTT
80038723 ATGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:80042779 original size:19 final size:19
Alignment explanation
Indices: 80042742--80042783 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
80042732 TAAAAATAAT
*
80042742 TATAGGAAATCTAAAATTA
1 TATAGCAAATCTAAAATTA
80042761 CTATAGCAAATCT-AAATTA
1 -TATAGCAAATCTAAAATTA
80042780 TATA
1 TATA
80042784 ATTTAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 6 0.29
20 11 0.52
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (19 bp):
TATAGCAAATCTAAAATTA
Found at i:80046350 original size:17 final size:18
Alignment explanation
Indices: 80046317--80046350 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80046307 ATTTATTTTG
80046317 TAAATCAACAATTATAAA
1 TAAATCAACAATTATAAA
*
80046335 TAAATC-ACACTTATAA
1 TAAATCAACAATTATAA
80046351 TATACATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAATCAACAATTATAAA
Found at i:80047887 original size:28 final size:29
Alignment explanation
Indices: 80047846--80047908 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 29
80047836 AATTATTTTT
80047846 AAAT-GTTAATTTAGTAATATTATG-AAA
1 AAATGGTTAATTTAGTAATATTATGAAAA
80047873 AAATGGTTAATTTAGTAATATTATGAAAA
1 AAATGGTTAATTTAGTAATATTATGAAAA
80047902 AAATGGT
1 AAATGGT
80047909 ATTCTTGTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 4 0.12
28 20 0.59
29 10 0.29
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (29 bp):
AAATGGTTAATTTAGTAATATTATGAAAA
Found at i:80051747 original size:20 final size:20
Alignment explanation
Indices: 80051722--80051771 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
80051712 TGGCTTAAAA
80051722 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
80051742 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
80051759 GTGGTAGTGGATT
1 TTGGTAGTGGATT
80051772 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:80056385 original size:20 final size:20
Alignment explanation
Indices: 80056360--80056397 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
80056350 ATGGCTTAAA
80056360 ATTGGTAGTGGATTGTTGTT
1 ATTGGTAGTGGATTGTTGTT
*
80056380 ATTGGTAGTGGGTTGTTG
1 ATTGGTAGTGGATTGTTG
80056398 GTGGTAGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.39, T:0.47
Consensus pattern (20 bp):
ATTGGTAGTGGATTGTTGTT
Found at i:80056396 original size:17 final size:18
Alignment explanation
Indices: 80056360--80056407 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
80056350 ATGGCTTAAA
80056360 ATTGGTAGTGGATTGTTGTT
1 ATTGGTAGTGG--TGTTGTT
80056380 ATTGGTAGTGG-GTTGTT
1 ATTGGTAGTGGTGTTGTT
**
80056397 GGTGGTAGTGG
1 ATTGGTAGTGG
80056408 ATTAGTGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 15 0.58
20 11 0.42
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (18 bp):
ATTGGTAGTGGTGTTGTT
Found at i:80058121 original size:3 final size:3
Alignment explanation
Indices: 80058113--80058150 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
80058103 TAAATGATTG
80058113 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
80058151 TTGATGGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:80060160 original size:36 final size:35
Alignment explanation
Indices: 80060114--80060196 Score: 112
Period size: 35 Copynumber: 2.3 Consensus size: 35
80060104 CTTTAAGAGA
* * *
80060114 AAAGTTGAAAATATCACCAATAATAGGATGACTTTG
1 AAAGTCGAAAACAT-ACCAATAATAGAATGACTTTG
* *
80060150 AAAGTCGAAAACCTACCAATAATAGAATGATTTTG
1 AAAGTCGAAAACATACCAATAATAGAATGACTTTG
80060185 AAAGTCGAAAAC
1 AAAGTCGAAAAC
80060197 CTGAAGCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 31 0.74
36 11 0.26
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (35 bp):
AAAGTCGAAAACATACCAATAATAGAATGACTTTG
Found at i:80060173 original size:35 final size:35
Alignment explanation
Indices: 80060129--80060198 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
80060119 TGAAAATATC
*
80060129 ACCAATAATAGGATGACTTTGAAAGTCGAAAACCT
1 ACCAATAATAGAATGACTTTGAAAGTCGAAAACCT
*
80060164 ACCAATAATAGAATGATTTTGAAAGTCGAAAACCT
1 ACCAATAATAGAATGACTTTGAAAGTCGAAAACCT
80060199 GAAGCTACAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (35 bp):
ACCAATAATAGAATGACTTTGAAAGTCGAAAACCT
Found at i:80069509 original size:16 final size:18
Alignment explanation
Indices: 80069478--80069514 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
80069468 ATTTTCAGTT
*
80069478 TAAAATTTTTATAATTTA
1 TAAAATTTTTATAATTAA
80069496 TAAAA-TTTTA-AATTAA
1 TAAAATTTTTATAATTAA
80069512 TAA
1 TAA
80069515 TGATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATTTTTATAATTAA
Found at i:80069540 original size:29 final size:28
Alignment explanation
Indices: 80069500--80069560 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
80069490 AATTTATAAA
*
80069500 ATTTTAAATTAATAATGATAA-AATTTT
1 ATTTTAAATTAAAAATGATAAGAATTTT
80069527 ATTTTAATATTTAAAAATGATAAGAATTTT
1 ATTTTAA-A-TTAAAAATGATAAGAATTTT
80069557 ATTT
1 ATTT
80069561 AAGAATTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 7 0.23
28 1 0.03
29 12 0.40
30 10 0.33
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (28 bp):
ATTTTAAATTAAAAATGATAAGAATTTT
Found at i:80073503 original size:17 final size:16
Alignment explanation
Indices: 80073469--80073499 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80073459 CCAATTTATT
*
80073469 TTCCCTCAAACTTTTA
1 TTCCCTAAAACTTTTA
80073485 TTCCCTAAAACTTTT
1 TTCCCTAAAACTTTT
80073500 TATTTTTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (16 bp):
TTCCCTAAAACTTTTA
Found at i:80081244 original size:8 final size:8
Alignment explanation
Indices: 80081217--80081285 Score: 97
Period size: 8 Copynumber: 8.6 Consensus size: 8
80081207 TTCATTTCGG
80081217 GAAGA-AA
1 GAAGAGAA
80081224 GAAGGAGAA
1 GAA-GAGAA
*
80081233 GAAGAAAA
1 GAAGAGAA
80081241 GAAGAGAA
1 GAAGAGAA
80081249 GAAGAGAA
1 GAAGAGAA
80081257 GAAGA-AA
1 GAAGAGAA
80081264 GGAAGAGAA
1 -GAAGAGAA
80081273 GAAGAGAA
1 GAAGAGAA
80081281 GAAGA
1 GAAGA
80081286 AGGATGCGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
7 5 0.09
8 44 0.79
9 7 0.12
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (8 bp):
GAAGAGAA
Found at i:80081255 original size:24 final size:24
Alignment explanation
Indices: 80081217--80081286 Score: 115
Period size: 24 Copynumber: 2.9 Consensus size: 24
80081207 TTCATTTCGG
80081217 GAAGA-AAGAAGGAGAAGAAGAAAA
1 GAAGAGAAGAA-GAGAAGAAGAAAA
*
80081241 GAAGAGAAGAAGAGAAGAAGAAAG
1 GAAGAGAAGAAGAGAAGAAGAAAA
80081265 GAAGAGAAGAAGAGAAGAAGAA
1 GAAGAGAAGAAGAGAAGAAGAA
80081287 GGATGCGACA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 39 0.89
25 5 0.11
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (24 bp):
GAAGAGAAGAAGAGAAGAAGAAAA
Found at i:80081723 original size:16 final size:16
Alignment explanation
Indices: 80081692--80081775 Score: 62
Period size: 16 Copynumber: 5.1 Consensus size: 16
80081682 ACCTTTTACA
80081692 AAAATACTATAAAAAAT
1 AAAATACTA-AAAAAAT
80081709 AAAATACTAAAAAAAT
1 AAAATACTAAAAAAAT
*** * * *
80081725 ATCTTAATGAAAGAAT
1 AAAATACTAAAAAAAT
80081741 AAAATA-TGAAAACAAAT
1 AAAATACT-AAAA-AAAT
* *
80081758 TAAATACGAAAAAAAT
1 AAAATACTAAAAAAAT
80081774 AA
1 AA
80081776 CTTTTTGGAG
Statistics
Matches: 50, Mismatches: 14, Indels: 7
0.70 0.20 0.10
Matches are distributed among these distances:
15 1 0.02
16 28 0.56
17 21 0.42
ACGTcount: A:0.68, C:0.06, G:0.05, T:0.21
Consensus pattern (16 bp):
AAAATACTAAAAAAAT
Found at i:80081990 original size:93 final size:98
Alignment explanation
Indices: 80081807--80082023 Score: 261
Period size: 93 Copynumber: 2.2 Consensus size: 98
80081797 TGGCGGATTT
* *
80081807 TTTACTAAAATAATAT--AAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCTGAAA
1 TTTACTAAATTAATATAAAAAAATAAAATACAAAAATAATATATTTT---AAATAAAA-CTGAAA
80081870 ATTTAAAAAATACAAACAAAAGACCAAAATCAGGGTTA
62 A-TTAAAAAATACAAACAAAAGACCAAAATCAGGGTTA
*
80081908 TTTACTAAATTAATATAAAAAAATAAAATACAAAAATAGTATATTTT-AA-AAAA-T-AAAA-TA
1 TTTACTAAATTAATATAAAAAAATAAAATACAAAAATAATATATTTTAAATAAAACTGAAAATTA
* * *
80081968 AAAAATACCAAC-AAAGTGCCAAAATTAGGGTTA
66 AAAAATACAAACAAAAG-ACCAAAATCAGGGTTA
*
80082001 TTTATTAAATTAATATAAAAAAA
1 TTTACTAAATTAATATAAAAAAA
80082024 CACTTAAATA
Statistics
Matches: 106, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
92 4 0.04
93 49 0.46
95 4 0.04
96 1 0.01
98 4 0.04
99 2 0.02
101 15 0.14
103 27 0.25
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.28
Consensus pattern (98 bp):
TTTACTAAATTAATATAAAAAAATAAAATACAAAAATAATATATTTTAAATAAAACTGAAAATTA
AAAAATACAAACAAAAGACCAAAATCAGGGTTA
Found at i:80082191 original size:149 final size:149
Alignment explanation
Indices: 80081905--80082292 Score: 551
Period size: 149 Copynumber: 2.6 Consensus size: 149
80081895 AAAATCAGGG
* *
80081905 TTATTTACTAAATTAATATAAAAAAATAAAATACAAAAATAGTATATTTT----AA-AAAA-T-A
1 TTATGTACTAAAATAATAT--AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATTGA
* * *
80081963 AAAT-AAAAAATACCAACAAAGTGCCAAAATTAGGGTTATTTATTAAATTAATATAAAAAAACAC
64 AAATAAAAAAATACCAACAAAGGGCCAAAATAAGGGATATTTATTAAATTAATATAAAAAAACAC
* *
80082027 TTAAATAATGCATTTAGAACA
129 TTAAATAATACATTTAAAACA
80082048 TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAA
1 TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAAT-TGAA
* *
80082113 AATAAAAAAATACCAATAAAGGGCCAAAATAAGGGATATTTATTAAATTAATAT-AAAAAATACT
65 AATAAAAAAATACCAACAAAGGGCCAAAATAAGGGATATTTATTAAATTAATATAAAAAAACACT
80082177 TAAATAATACATTTAAAACA
130 TAAATAATACATTTAAAACA
* *
80082197 TTATGGACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAA
1 TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATT-GAA
* *
80082262 AATAAAAAAAATATCAACAAAGGGTCAAAAT
65 AAT-AAAAAAATACCAACAAAGGGCCAAAAT
80082293 CACCTAAAAA
Statistics
Matches: 220, Mismatches: 14, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
141 29 0.13
143 17 0.08
145 2 0.01
146 4 0.02
148 2 0.01
149 96 0.44
150 70 0.32
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (149 bp):
TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATTGAAA
ATAAAAAAATACCAACAAAGGGCCAAAATAAGGGATATTTATTAAATTAATATAAAAAAACACTT
AAATAATACATTTAAAACA
Found at i:80084564 original size:33 final size:33
Alignment explanation
Indices: 80084503--80084585 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
80084493 ATCTTTGGGT
* * * *
80084503 CGTATCTACAGCAGCACAACACTTCTCCCAG-C
1 CGTATCCACCGCAGTACAACACTACTCCCAGTC
*
80084535 CAGTATCCACCGCAGTACAGCACTACTCCCAGTC
1 C-GTATCCACCGCAGTACAACACTACTCCCAGTC
80084569 CGTATCCACCGCAGTAC
1 CGTATCCACCGCAGTAC
80084586 TCCACTCCTC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
32 1 0.02
33 41 0.93
34 2 0.05
ACGTcount: A:0.27, C:0.41, G:0.14, T:0.18
Consensus pattern (33 bp):
CGTATCCACCGCAGTACAACACTACTCCCAGTC
Found at i:80084927 original size:135 final size:135
Alignment explanation
Indices: 80084685--80084955 Score: 533
Period size: 135 Copynumber: 2.0 Consensus size: 135
80084675 CATGTATCAA
80084685 ACACCCTCACCTGCGACTGAAGAGGATGTTGGTCGTCGCAATCACCCACAATGTAAATGTCGAGC
1 ACACCCTCACCTGCGACTGAAGAGGATGTTGGTCGTCGCAATCACCCACAATGTAAATGTCGAGC
80084750 TTCGCAGAAATATACCCCTAGGCCACACCATCAAACCATCAATTTTAGGGGTTTCTTGGGTTTTG
66 TTCGCAGAAATATACCCCTAGGCCACACCATCAAACCATCAATTTTAGGGGTTTCTTGGGTTTTG
80084815 ATATT
131 ATATT
80084820 ACACCCTCACCTGCGACTGAAGAGGATGTTGGTCGTCGCAATCACCCACAATGTAAATGTCGAGC
1 ACACCCTCACCTGCGACTGAAGAGGATGTTGGTCGTCGCAATCACCCACAATGTAAATGTCGAGC
*
80084885 TTCGCAGAAATATGCCCCTAGGCCACACCATCAAACCATCAATTTTAGGGGTTTCTTGGGTTTTG
66 TTCGCAGAAATATACCCCTAGGCCACACCATCAAACCATCAATTTTAGGGGTTTCTTGGGTTTTG
80084950 ATATT
131 ATATT
80084955 A
1 A
80084956 AATTTTTTTA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 135 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (135 bp):
ACACCCTCACCTGCGACTGAAGAGGATGTTGGTCGTCGCAATCACCCACAATGTAAATGTCGAGC
TTCGCAGAAATATACCCCTAGGCCACACCATCAAACCATCAATTTTAGGGGTTTCTTGGGTTTTG
ATATT
Found at i:80087377 original size:25 final size:25
Alignment explanation
Indices: 80087349--80087418 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
80087339 CTCTTTTAAT
*
80087349 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80087374 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80087399 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
80087419 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80087654 original size:27 final size:27
Alignment explanation
Indices: 80087631--80087744 Score: 142
Period size: 27 Copynumber: 4.2 Consensus size: 27
80087621 CAAGGGTGTC
80087631 TCGATAATTCTACCTTACAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATT
*
80087658 TCGATAATTCTATCC-TACAGGGTTATT
1 TCGATAATTCTA-CCTTACAGGGGTATT
* *
80087685 TC-AGTAATTCTACCCTATAGGGGTATT
1 TCGA-TAATTCTACCTTACAGGGGTATT
* *
80087712 TCGGTAATTCTACCTTACAAGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATT
*
80087739 TTGATA
1 TCGATA
80087745 TTTTACAAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.04
27 69 0.93
28 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
TCGATAATTCTACCTTACAGGGGTATT
Found at i:80087763 original size:26 final size:27
Alignment explanation
Indices: 80087729--80087951 Score: 170
Period size: 27 Copynumber: 8.3 Consensus size: 27
80087719 TTCTACCTTA
80087729 CAAGGGTATTTTGAT-ATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * *
80087755 CAAGAGTATTTCGATAATTTCACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * * *
80087782 CAGGGGTATTTTGGTAATTTTA-GAAG
1 CAAGGGTATTTTGATAATTTTACAAAT
* *
80087808 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGATAATTTTACAAAT
*
80087835 CTAGGGGTATTTT-AGTAATTTTACAAA-
1 C-AAGGGTATTTTGA-TAATTTTACAAAT
* * *
80087862 CTAGGGGTATTTTGGTAATTTTACTAAT
1 C-AAGGGTATTTTGATAATTTTACAAAT
* * ** *
80087890 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGATAATTTTACAAAT
**
80087917 CAAGGGTATTTT-AGTAATTTTGTAAAT
1 CAAGGGTATTTTGA-TAATTTTACAAAT
*
80087944 CGAGGGTA
1 CAAGGGTA
80087952 AAATGGTAAT
Statistics
Matches: 166, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.10
27 147 0.89
28 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGATAATTTTACAAAT
Found at i:80087827 original size:54 final size:54
Alignment explanation
Indices: 80087760--80087937 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 54
80087750 CAAATCAAGA
* * * *
80087760 GTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTAGAAGCTAGGG
1 GTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAGAAACTAGGG
* *
80087814 GTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTAGAAACTAGGG
* * *
80087868 GTATTTTGGTAATTTTACTAATC-GAGGGTATTTTGGTAATTTT-GTAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTAG-AAACTAGGG
*
80087922 GTATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
80087938 GTAAATCGAG
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
53 2 0.02
54 105 0.97
55 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAGAAACTAGGG
Found at i:80087861 original size:81 final size:81
Alignment explanation
Indices: 80087731--80087937 Score: 251
Period size: 81 Copynumber: 2.6 Consensus size: 81
80087721 CTACCTTACA
* * * * *
80087731 AGGGTATTTTGAT-ATTTTACAAATCAAGAGTA-TTTCGATAATTTCACAAA-TCAGGGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACT-AGGGGTATTT
*
80087793 TGGTAATTTTA-GAAGCT
64 TGGTAATTTTACGAAGCG
* *
80087810 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
* *
80087875 GGTAATTTTACTAATCG
65 GGTAATTTTACGAAGCG
**
80087892 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
80087938 GTAAATCGAG
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 11 0.10
81 88 0.81
82 9 0.08
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTG
GTAATTTTACGAAGCG
Found at i:80087945 original size:54 final size:54
Alignment explanation
Indices: 80087785--80087969 Score: 196
Period size: 54 Copynumber: 3.4 Consensus size: 54
80087775 CACAAATCAG
* * *
80087785 GGGTATTTTGGTAATTTTAG-AAGCTAGGGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTT-GTAAACTAGGGGTATTTTGGTAATTTTATAAATCGA
* **
80087838 GGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACT-AATCGA
1 -GGGTATTTTGGTAATTTTGTAAACTAGGGGTATTTTGGTAATTTTA-TAAATCGA
* * * *
80087893 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAACTAGGGGTATTTTGGTAATTTTATAAATCGA
*** *
80087947 GGGTAAAATGGTAATTCTGTAAA
1 GGGTATTTTGGTAATTTTGTAAA
80087970 TTGAGGGTAA
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 108 0.97
55 2 0.02
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTGTAAACTAGGGGTATTTTGGTAATTTTATAAATCGA
Found at i:80087959 original size:81 final size:81
Alignment explanation
Indices: 80087731--80087962 Score: 204
Period size: 81 Copynumber: 2.9 Consensus size: 81
80087721 CTACCTTACA
* * * * * ***
80087731 AGGGTATTTTGAT-ATTTTACAAATCAAGAGTA-TTTCGATAATTTCACAAATC-AGGGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAA-CGAGGGGTAAAA
* * *
80087793 TGGTAATTTTA-GAAGCT
64 TGGTAATTTTACTAATCG
* * * ***
80087810 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTAAAAT
80087875 GGTAATTTTACTAATCG
65 GGTAATTTTACTAATCG
** **
80087892 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGA-GGGTAAAAT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAA-CGAGGGGTAAAAT
80087956 GGTAATT
65 GGTAATT
80087963 CTGTAAATTG
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 12 0.09
81 104 0.82
82 10 0.08
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTAAAATG
GTAATTTTACTAATCG
Found at i:80087970 original size:27 final size:27
Alignment explanation
Indices: 80087930--80088150 Score: 318
Period size: 27 Copynumber: 8.2 Consensus size: 27
80087920 GGGTATTTTA
* *
80087930 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
80087957 GTAATTCTGTAAATTGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80087984 GTAAGTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80088011 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80088038 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
80088065 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80088092 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
80088119 GTAATTCTATAAATCAAGGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
80088145 GTAATT
1 GTAATT
80088151 TTACAAATTG
Statistics
Matches: 178, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
26 11 0.06
27 167 0.94
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:80087976 original size:81 final size:81
Alignment explanation
Indices: 80087887--80088150 Score: 260
Period size: 81 Copynumber: 3.3 Consensus size: 81
80087877 TAATTTTACT
*** * * *** * *
80087887 AATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
*
80087952 AAATGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* ** * * * * ** * *
80087968 AATTGAGGGTAAAACAGTAAGTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAAGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
80088033 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* * * *
80088049 AATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
*
80088114 AAACGGTAATTCTATA
66 AAACGGTAATTCTGTA
* *
80088130 AATCAAGGGT-AAACGGTAATT
1 AATCGAGGGTAAAATGGTAATT
80088151 TTACAAATTG
Statistics
Matches: 152, Mismatches: 31, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
80 9 0.06
81 143 0.94
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:80092948 original size:46 final size:44
Alignment explanation
Indices: 80092884--80092998 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
80092874 ACAGGACAGA
* *
80092884 ACAGAAATGAGTCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGTCATGTAAGTCCATATT--AAATATGGCATTGGAG
* * * *
80092930 ACAGGATTGAGCCATGTAATTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGTCATGTAAGTCCATATTAAATATGGCATTGGAG
* *
80092974 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGTCATGTAAGTCCAT
80092999 GTCAAAGACA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 34 0.59
46 24 0.41
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (44 bp):
ACAGGAATGAGTCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:80092976 original size:44 final size:45
Alignment explanation
Indices: 80092891--80093017 Score: 130
Period size: 44 Copynumber: 2.8 Consensus size: 45
80092881 AGAACAGAAA
* *
80092891 TGAGTCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
* * *
80092937 TGAGCCATGTAATTCCATATT-ATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
* ** * * *
80092981 TAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 TGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
80093018 TAGGATATTG
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:80094664 original size:27 final size:27
Alignment explanation
Indices: 80094602--80094664 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
80094592 TCAGCAACTG
**
80094602 GTGCCGCCTCTGACAGAGGCTTCATGA
1 GTGCCGCCTCTGACAGAGGCTTCACCA
*
80094629 GTGCTGCCTCT-ACCAGAGGCTTCACCA
1 GTGCCGCCTCTGA-CAGAGGCTTCACCA
*
80094656 TTGCCGCCT
1 GTGCCGCCT
80094665 TTGGCACATC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.16, C:0.35, G:0.25, T:0.24
Consensus pattern (27 bp):
GTGCCGCCTCTGACAGAGGCTTCACCA
Found at i:80097336 original size:5 final size:5
Alignment explanation
Indices: 80097326--80097358 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
80097316 CTGTGTGTGC
80097326 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
80097359 CACAAATTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:80101390 original size:39 final size:39
Alignment explanation
Indices: 80101345--80101429 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
80101335 CATAGTCTAC
80101345 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
1 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
*
80101384 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAGTTT
1 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
*
80101423 TCTTCTT
1 TCCTCTT
80101430 CTCTGCCCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (39 bp):
TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
Found at i:80101494 original size:5 final size:5
Alignment explanation
Indices: 80101484--80101512 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80101474 CTGTGTGTTT
80101484 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
80101513 CACATATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:80112259 original size:24 final size:24
Alignment explanation
Indices: 80112232--80112278 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
80112222 TTTAGAGGAT
*
80112232 TTTGTGTTTACGTTTTGAGGGTTC
1 TTTGTGTTTACGTTTTCAGGGTTC
* **
80112256 TTTGTTTTTGGGTTTTCAGGGTT
1 TTTGTGTTTACGTTTTCAGGGTT
80112279 TAGTCTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.30, T:0.57
Consensus pattern (24 bp):
TTTGTGTTTACGTTTTCAGGGTTC
Found at i:80113731 original size:16 final size:16
Alignment explanation
Indices: 80113712--80113755 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
80113702 AGAGGAAAAA
80113712 GAGAAGAGAGAGAAGG
1 GAGAAGAGAGAGAAGG
*
80113728 GAGAAAAGAGAGAAGG
1 GAGAAGAGAGAGAAGG
80113744 GAGGAAG-GAGAG
1 GA-GAAGAGAGAG
80113756 GGGGGAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (16 bp):
GAGAAGAGAGAGAAGG
Found at i:80115408 original size:54 final size:54
Alignment explanation
Indices: 80115303--80115462 Score: 223
Period size: 54 Copynumber: 3.0 Consensus size: 54
80115293 CATATGACCT
* * * * * *
80115303 AAGGCTCAACTCACTTCTCGCAATATGGGTTGATTTTCGAAGAATAAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
**
80115357 AAGG-TACAACTCACCTCTCGCAATATGAGTTCCTTTTTGAAAAACAGAAATTAA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
80115411 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
80115463 GGAAAGTAGA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 91 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:80134727 original size:24 final size:23
Alignment explanation
Indices: 80134671--80134721 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
80134661 GGGGAAGGTT
80134671 TTTTATTTAAAATTAATATAATTA
1 TTTTATTTAAAATTAATATAA-TA
*
80134695 TTTTATTTAATATTAATATAA-A
1 TTTTATTTAAAATTAATATAATA
80134717 TTTTA
1 TTTTA
80134722 AATTTATTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 6 0.23
24 20 0.77
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTATTTAAAATTAATATAATA
Found at i:80140837 original size:20 final size:20
Alignment explanation
Indices: 80140812--80140850 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
80140802 TGCTCTAGGG
80140812 TTAGTTTAACATTACTTTTT
1 TTAGTTTAACATTACTTTTT
80140832 TTAGTTTAACATTACTTTT
1 TTAGTTTAACATTACTTTT
80140851 GAAAAGTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.59
Consensus pattern (20 bp):
TTAGTTTAACATTACTTTTT
Found at i:80140868 original size:13 final size:13
Alignment explanation
Indices: 80140846--80140897 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
80140836 TTTAACATTA
*
80140846 CTTTTGAAAAGTT
1 CTTTTAAAAAGTT
*
80140859 CTTTTAAAAAGTG
1 CTTTTAAAAAGTT
*
80140872 ATTTTAAAAAGTAT
1 CTTTTAAAAAGT-T
*
80140886 -TTTTGAAAAGTT
1 CTTTTAAAAAGTT
80140898 TTGTTTAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
12 1 0.03
13 32 0.97
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (13 bp):
CTTTTAAAAAGTT
Found at i:80140882 original size:26 final size:26
Alignment explanation
Indices: 80140847--80140896 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
80140837 TTAACATTAC
*
80140847 TTTTGAAAAGT-TCTTTTAAAAAGTGA
1 TTTTAAAAAGTAT-TTTTAAAAAGTGA
*
80140873 TTTTAAAAAGTATTTTTGAAAAGT
1 TTTTAAAAAGTATTTTTAAAAAGT
80140897 TTTGTTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (26 bp):
TTTTAAAAAGTATTTTTAAAAAGTGA
Found at i:80141218 original size:6 final size:6
Alignment explanation
Indices: 80141209--80141239 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
80141199 AATGATAATA
80141209 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
80141240 AAAATATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:80141311 original size:20 final size:20
Alignment explanation
Indices: 80141286--80141326 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80141276 ATTATATTTT
80141286 TCAATATTATTAAACATACA
1 TCAATATTATTAAACATACA
80141306 TCAATATTATTAAACATACA
1 TCAATATTATTAAACATACA
80141326 T
1 T
80141327 ATTTAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (20 bp):
TCAATATTATTAAACATACA
Found at i:80141374 original size:29 final size:30
Alignment explanation
Indices: 80141341--80141398 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
80141331 AATTATTTAT
80141341 ATTTATTCA-TACAATAAATTA-TTAATATA
1 ATTTATT-ATTACAATAAATTATTTAATATA
**
80141370 ATTTATTATTTTAATAAATTATTTAATAT
1 ATTTATTATTACAATAAATTATTTAATAT
80141399 TTCAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 17 0.68
30 7 0.28
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (30 bp):
ATTTATTATTACAATAAATTATTTAATATA
Found at i:80141456 original size:15 final size:15
Alignment explanation
Indices: 80141411--80141458 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
80141401 CAATTTTAAT
80141411 TTAATAATAAATATTTA
1 TTAATAATAAATA--TA
*
80141428 TTACAATTATAAATATA
1 TT--AATAATAAATATA
80141445 TTAATAATAAATAT
1 TTAATAATAAATAT
80141459 TTTGTAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 11 0.41
17 6 0.22
19 10 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATAATAAATATA
Found at i:80145866 original size:23 final size:22
Alignment explanation
Indices: 80145835--80145879 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
80145825 TTAAGTGTGG
80145835 GGAGGTTGT-TTATATTTTAGTTT
1 GGAGGTTGTATT-TATTTT-GTTT
*
80145858 GGAGTTTGTATTTATTTTGTTT
1 GGAGGTTGTATTTATTTTGTTT
80145880 TGAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 14 0.70
24 2 0.10
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (22 bp):
GGAGGTTGTATTTATTTTGTTT
Found at i:80147178 original size:11 final size:11
Alignment explanation
Indices: 80147162--80147192 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
80147152 GTAATGTTAA
80147162 AATATATACAT
1 AATATATACAT
80147173 AATATATACAT
1 AATATATACAT
80147184 ATATATATA
1 A-ATATATA
80147193 AAATGAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:80147482 original size:24 final size:24
Alignment explanation
Indices: 80147455--80147570 Score: 71
Period size: 24 Copynumber: 4.9 Consensus size: 24
80147445 ACATATACAT
*
80147455 ATAATAGTGTTTAAAAATATATAC
1 ATAATAGTGTATAAAAATATATAC
* ** *
80147479 ATAAGA-TGATATGGAAATATGTAC
1 ATAATAGTG-TATAAAAATATATAC
*
80147503 ATGGAATAGTATATAAAAATATA-AC
1 AT--AATAGTGTATAAAAATATATAC
* * *
80147528 -TAATAATAT-TGAAAATATATAC
1 ATAATAGTGTATAAAAATATATAC
*
80147550 ATAATA-TATATAAAACATATA
1 ATAATAGTGTATAAAA-ATATA
80147571 CGATATATAC
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
21 9 0.13
22 12 0.17
23 11 0.15
24 24 0.34
25 2 0.03
26 12 0.17
27 1 0.01
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.33
Consensus pattern (24 bp):
ATAATAGTGTATAAAAATATATAC
Found at i:80147558 original size:22 final size:23
Alignment explanation
Indices: 80147468--80147579 Score: 90
Period size: 22 Copynumber: 4.8 Consensus size: 23
80147458 ATAGTGTTTA
*
80147468 AAAATATATACATAAGATGATATG
1 AAAATATATACATAATAT-ATATG
* * *
80147492 GAAATATGTACATGGAATAGTATATA
1 AAAATATATACAT--AATA-TATATG
80147518 AAAATATA-AC-TAATA-ATATTG
1 AAAATATATACATAATATATA-TG
80147539 AAAATATATACATAATATATAT-
1 AAAATATATACATAATATATATG
*
80147561 AAAACATATACGAT-ATATA
1 AAAATATATAC-ATAATATA
80147580 CATATACATT
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
20 3 0.04
21 9 0.12
22 21 0.29
23 8 0.11
24 15 0.21
25 2 0.03
26 13 0.18
27 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.31
Consensus pattern (23 bp):
AAAATATATACATAATATATATG
Found at i:80147883 original size:23 final size:24
Alignment explanation
Indices: 80147824--80147894 Score: 67
Period size: 23 Copynumber: 3.0 Consensus size: 24
80147814 TAATATGATC
* *
80147824 AAAATACGTACATAGAATAGTATA
1 AAAATATGTACATAAAATAGTATA
*
80147848 AGAAATATATACATGAAAATA-T-TA
1 A-AAATATGTACAT-AAAATAGTATA
*
80147872 AAAATATGTACATAATATA-TATA
1 AAAATATGTACATAAAATAGTATA
80147895 TATGGTATGG
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
22 6 0.15
23 13 0.33
24 4 0.10
25 11 0.28
26 5 0.13
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (24 bp):
AAAATATGTACATAAAATAGTATA
Found at i:80148315 original size:3 final size:3
Alignment explanation
Indices: 80148309--80148374 Score: 66
Period size: 3 Copynumber: 22.3 Consensus size: 3
80148299 TAAATATAAC
*
80148309 ATA ATA AT- ATA A-A ATA ATA ATA ATA ATA ATA ATA GTA ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
**
80148355 ATA ATA GCA ATA TATA ATA A
1 ATA ATA ATA ATA -ATA ATA A
80148375 AAACTTAATC
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
2 6 0.12
3 41 0.79
4 5 0.10
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:80148319 original size:13 final size:12
Alignment explanation
Indices: 80148301--80148360 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
80148291 AATAATACTA
80148301 AATATAACATAAT
1 AATATAA-ATAAT
80148314 AATAT-AA-AAT
1 AATATAAATAAT
80148324 AATA-ATAATAAT
1 AATATA-AATAAT
*
80148336 AATA-ATAGTAAT
1 AATATA-AATAAT
80148348 AATATAAATAAT
1 AATATAAATAAT
80148360 A
1 A
80148361 GCAATATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
10 7 0.17
11 3 0.07
12 25 0.61
13 6 0.15
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (12 bp):
AATATAAATAAT
Found at i:80153733 original size:26 final size:26
Alignment explanation
Indices: 80153687--80153739 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
80153677 TCAAACATGC
*
80153687 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
80153713 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
80153739 A
1 A
80153740 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:80155255 original size:26 final size:26
Alignment explanation
Indices: 80155219--80155326 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
80155209 TGAAATGCCC
* *
80155219 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80155245 ATAATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
80155271 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
80155297 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80155323 ATCA
1 ATCA
80155327 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80160484 original size:17 final size:18
Alignment explanation
Indices: 80160462--80160498 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80160452 TGGTGAGAAG
80160462 ATAAAT-TATACT-TTTAA
1 ATAAATATATA-TGTTTAA
80160479 ATAAATATATATGTTTAA
1 ATAAATATATATGTTTAA
80160497 AT
1 AT
80160499 CTTAAATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
ATAAATATATATGTTTAA
Found at i:80162880 original size:16 final size:16
Alignment explanation
Indices: 80162827--80162873 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
80162817 TGCCAAAAAC
80162827 AATAAAATAAATAATAA
1 AATAAAATAAA-AATAA
* * *
80162844 AATAACACAAAAATCA
1 AATAAAATAAAAATAA
80162860 AATAAAATAAAAAT
1 AATAAAATAAAAAT
80162874 GAGATAATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:80163673 original size:216 final size:215
Alignment explanation
Indices: 80163334--80163797 Score: 705
Period size: 216 Copynumber: 2.2 Consensus size: 215
80163324 CTAAAAGGGT
** **
80163334 AAATAGA-CCTTTAGTCCAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTTGACC
1 AAATAGACCCTTT-GTTAAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTCAACC
* *
80163398 CAAAACAACACCGTTTCAGGTGCTTATCCATTAAAACGGCTCAAGGACCAAATTAAAACAAAACT
65 CAAAACAACACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACT
80163463 ACAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATTGAAACGCGCTATA
130 ACAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATT-AAACGCGCTATA
* *
80163528 AAAGCAGAAGGACTGATCTCGC
194 AAAGCAAAAGAACTGATCTCGC
* * * *
80163550 AAATAGACCCTTTGTTAAAAACACGTGGATCCTGGAATGGGTCGGGTCGGATCATGGGTCAACTC
1 AAATAGACCCTTTGTTAAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTCAACCC
**
80163615 AAAACGGCACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACTA
66 AAAACAACACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACTA
* * *
80163680 CAAGTTTGTGGTAAAATTTTAAAAAATAGAAAAATGAGATAGGACTAAATTAAACGCGCTGTGAA
131 CAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATTAAACGCGCTATAAA
* *
80163745 AGCAAAAGAATTGATCTCGT
196 AGCAAAAGAACTGATCTCGC
* * *
80163765 AAATAGACCCTTTGTTGAAAACATGCGGATCCT
1 AAATAGACCCTTTGTTAAAAACACGAGGATCCT
80163798 CTGGAGTGGG
Statistics
Matches: 225, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
215 58 0.26
216 162 0.72
217 5 0.02
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (215 bp):
AAATAGACCCTTTGTTAAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTCAACCC
AAAACAACACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACTA
CAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATTAAACGCGCTATAAA
AGCAAAAGAACTGATCTCGC
Found at i:80165966 original size:14 final size:14
Alignment explanation
Indices: 80165933--80165960 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80165923 AAGCTTACTG
80165933 TAGTTTGCTTTGAT
1 TAGTTTGCTTTGAT
80165947 TAGTTTGCTTTGAT
1 TAGTTTGCTTTGAT
80165961 ATGTTTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.57
Consensus pattern (14 bp):
TAGTTTGCTTTGAT
Found at i:80166345 original size:128 final size:130
Alignment explanation
Indices: 80166184--80166517 Score: 444
Period size: 128 Copynumber: 2.6 Consensus size: 130
80166174 ATTCGTTTAA
**
80166184 AAATTCCTTAAAACGAAGGCAATGTTTGATGTTTGGAAATTCG-GGAAATCGTGCCCTATCGTGC
1 AAATT-CTTAAAAC-AAGGCAATGTTCAATGTTTGGAAATTCGAGG-AATCGTGCCCTATCGTGC
80166248 TGGGTTTCGATTTTCCCGTTTGTTC-AAAATAATCGAATATTCCTTTAGAATTTCACTCATG-TT
63 TGGGTTTCGATTTTCCCGTTTGTTCAAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTT
80166311 TCC
128 TCC
* * * * *
80166314 CAATTCTTAAAACAAGGCAATATTCAATGTTTGGAAATTCGAGGAATCGTGCCTTATCATACTGG
1 AAATTCTTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGG
* * * * *
80166379 GTTTCGA-TTTCCTGTTTGTTCAAAAATAATTGAATATTCCTTTTGAATTTCACTCGTGTTTTCT
66 GTTTCGATTTTCCCGTTTGTTCAAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCC
* * * ** *
80166443 AAATT-TTAAAGCGAGGCAAGGTTCAATGTTTGGAAATTCGAGGAATCGCACCCTACCGTGCTGG
1 AAATTCTTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGG
80166507 GTTTCGATTTT
66 GTTTCGATTTT
80166518 TCGTTGGACT
Statistics
Matches: 177, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
127 13 0.07
128 139 0.79
129 21 0.12
130 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (130 bp):
AAATTCTTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGG
GTTTCGATTTTCCCGTTTGTTCAAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCC
Found at i:80167402 original size:13 final size:12
Alignment explanation
Indices: 80167360--80167396 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
80167350 TGTTTATACA
80167360 TATTTTTTGTTTT
1 TATTTTTT-TTTT
80167373 TATTTTTATTTTT
1 TATTTTT-TTTTT
80167386 TATTTTTTTTT
1 TATTTTTTTTT
80167397 GCTATTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.17
13 18 0.78
14 1 0.04
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (12 bp):
TATTTTTTTTTT
Found at i:80167402 original size:20 final size:19
Alignment explanation
Indices: 80167360--80167396 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80167350 TGTTTATACA
*
80167360 TATTTTTTGTTTTTATTTT
1 TATTTTTTATTTTTATTTT
80167379 TATTTTTTATTTTT-TTTT
1 TATTTTTTATTTTTATTTT
80167397 GCTATTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (19 bp):
TATTTTTTATTTTTATTTT
Found at i:80167683 original size:44 final size:44
Alignment explanation
Indices: 80167619--80168351 Score: 485
Period size: 44 Copynumber: 15.9 Consensus size: 44
80167609 ATATTAGTAA
* *
80167619 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* * *
80167663 CTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTAGTAGCTTTAGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--T-G---TA-G
* * * ** * *
80167714 CTTTAGTTTATTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAG
* *
80167759 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* * *
80167803 CTTCAATCTGCTCCACTGCCACTTTAGGGAGATAAGATTCGCCATGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TAG
* * * * ** *
80167853 CTTCAATATGCTCTATTGTAACTTCATCGAGATAAGATTCGCCATGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TAG
* * * *
80167903 CTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* * * * *
80167947 CTTCAATCTGCTTCACTGCAACTGCAGTGAAATAAGATTTGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* *
80167991 CTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTTGTCATG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A-G
* ** * *
80168037 TTAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGATTTATAA
1 ----CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* * * * * * *
80168085 CTTTAATCTCCTCTACTGCAATTTCAGAGAGAGAAGATTTGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAG
* * *
80168130 CTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCACCATGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TAG
* * *
80168180 CTTCAATTTGTTCCACTGCAACTTCAGGGAGATAAGATTTATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* * * * * * * * * * *
80168224 TTTTAATCTCCTCTACTGTAATTTTAGAGAGATAAAATTTTCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGTAG
* * * * ****
80168269 CTTAAATCTACACCACTGCAACTTCAGGGAGATTAGATTAACGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
* * *
80168313 CTTCAATCTACTCCACTGCAACTTAAGAGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
80168352 CACCATAATG
Statistics
Matches: 543, Mismatches: 120, Indels: 52
0.76 0.17 0.07
Matches are distributed among these distances:
44 246 0.45
45 101 0.19
46 4 0.01
47 1 0.00
48 1 0.00
49 4 0.01
50 153 0.28
51 33 0.06
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG
Found at i:80167865 original size:50 final size:50
Alignment explanation
Indices: 80167725--80168218 Score: 302
Period size: 50 Copynumber: 10.6 Consensus size: 50
80167715 TTTAGTTTAT
* *
80167725 TCCACTGCAACTTCAGGGAGATAAGACTT-G-C-T-AT--CTTCAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGA-TTCGCCATGATAACTTCAATATGC
* * ** *
80167770 TCCACTACAACTTCAGGGAGATAAGATT-----TG-TGGCTTCAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * *
80167814 TCCACTGCCACTTTAGGGAGATAAGATTCGCCATGATAACTTCAATATGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * **
80167864 TCTATTGTAACTTCATCGAGATAAGATTCGCCATGATAACTTCAATATGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
** *
80167914 TCCACTGCAACTTCAGAGAGATAAGATT-----T-ATGGCTTCAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * * **
80167958 TTCACTGCAACTGCAGTGAAATAAGATT-----TG-TGGCTTCAATATGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * * * * *
80168002 TCCACTGCAACTTCAGGGAGATAAAATTTGTCATGTTAACTTTAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * *
80168052 TCCACTGCAACTTCAAAGAGATAAGATT-----T-ATAACTTTAATCTCC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * * * * *
80168096 TCTACTGCAATTTCAGAGAGAGAAGATT-----TGTTATCTTAAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * * *
80168141 TCCACTGCAACTTCAGGGAGATAAAATTCACCATGATAACTTCAATTTGT
1 TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
*
80168191 TCCACTGCAACTTCAGGGAGATAAGATT
1 TCCACTGCAACTTCAGAGAGATAAGATT
80168219 TATAGTTTTA
Statistics
Matches: 367, Mismatches: 60, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
42 2 0.01
44 149 0.41
45 61 0.17
49 4 0.01
50 151 0.41
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (50 bp):
TCCACTGCAACTTCAGAGAGATAAGATTCGCCATGATAACTTCAATATGC
Found at i:80167995 original size:188 final size:188
Alignment explanation
Indices: 80167725--80168214 Score: 501
Period size: 188 Copynumber: 2.6 Consensus size: 188
80167715 TTTAGTTTAT
* * *
80167725 TCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCTGCTCCACTACAACTTCAGGGAG
1 TCCACTGCAACTTCAGAGAGATAAGACTT-CTATCTTCAATCTGCTCCACTACAACTGCAGGGAA
* * * *
80167790 ATAAGATTTGTGGCTTCAATCTGCTCCACTGCCACTTTAGGGAGATAAGATTCGCCATGATAACT
65 ATAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTCGCCATGATAACT
* * * **
80167855 TCAATATGCTCTATTGTAACTTCATCGAGATAAGATTCGCCATGATAACTTCAATATGC
130 TCAATATGCTCCACTGCAACTTCAAAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * *
80167914 TCCACTGCAACTTCAGAGAGATAAGA-TT-TATGGCTTCAATCTGCTTCACTGCAACTGCAGTGA
1 TCCACTGCAACTTCAGAGAGATAAGACTTCTAT--CTTCAATCTGCTCCACTACAACTGCAGGGA
* * *
80167977 AATAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTTGTCATGTTAAC
64 AATAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTCGCCATGATAAC
* * * * *
80168042 TTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGATT-----T-ATAACTTTAATCTCC
129 TTCAATATGCTCCACTGCAACTTCAAAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * * * * * * *
80168096 TCTACTGCAATTTCAGAGAGAGAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGAGAGATAAGACTT-CTATCTTCAATCTGCTCCACTACAACTGCAGGGAA
* ** * *
80168161 ATAAAATTCACCATGATAACTTCAATTTGTTCCACTGCAACTTCAGGGAGATAA
65 ATAAGATT-----TG-TGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAA
80168215 GATTTATAGT
Statistics
Matches: 254, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
182 35 0.14
183 36 0.14
185 3 0.01
186 3 0.01
188 118 0.46
189 59 0.23
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (188 bp):
TCCACTGCAACTTCAGAGAGATAAGACTTCTATCTTCAATCTGCTCCACTACAACTGCAGGGAAA
TAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTCGCCATGATAACTT
CAATATGCTCCACTGCAACTTCAAAGAGATAAGATTCGCCATGATAACTTCAATATGC
Found at i:80168105 original size:94 final size:91
Alignment explanation
Indices: 80167607--80168351 Score: 442
Period size: 94 Copynumber: 8.1 Consensus size: 91
80167597 AACTTTAAGG
* * *
80167607 AGATATTAGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TG--GCTTTAA
1 AGAT-TTA-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAACTTCAA
*
80167669 TCTGCTCTACTGCAACTTCAGAGAGATA
64 TCTGCTCCACTGCAACTTCAGAGAGATA
* * * * ** * * *
80167697 AGATTAGTAGCTTTAGGCTTTAGTTTATTCCACTGCAACTTCAGGGAGATAAGACTTG--CTATC
1 AGATT--TA----TA-ACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAAC
* *
80167760 TTCAATCTGCTCCACTACAACTTCAGGGAGATA
59 TTCAATCTGCTCCACTGCAACTTCAGAGAGATA
* ** * * * *
80167793 AGATTTGTGGCTTCAATCTGCTCCACTGCCACTTTAGGGAGATAAGATTCGCCATGATAACTTCA
1 AGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--TTG-TAACTTCA
* * * * **
80167858 ATATGCTCTATTGTAACTTCATCGAGATA
63 ATCTGCTCCACTGCAACTTCAGAGAGATA
* * * *
80167887 AGATTCGCCATGATAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTT-ATG--GCT
1 AGATT-----T-ATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAACT
* * * *
80167949 TCAATCTGCTTCACTGCAACTGCAGTGAAATA
60 TCAATCTGCTCCACTGCAACTTCAGAGAGATA
* ** * * *
80167981 AGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTTGTCATGTTAACTTTA
1 AGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT--TG-TAACTTCA
*
80168046 ATCTGCTCCACTGCAACTTCAAAGAGATA
63 ATCTGCTCCACTGCAACTTCAGAGAGATA
* * * * * * * *
80168075 AGATTTATAACTTTAATCTCCTCTACTGCAATTTCAGAGAGAGAAGATTTG-T-TATCTTAAATC
1 AGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAACTTCAATC
*
80168138 TGCTCCACTGCAACTTCAGGGAGATA
66 TGCTCCACTGCAACTTCAGAGAGATA
* * * * *
80168164 AAATTCACCATGATAACTTCAATTTGTTCCACTGCAACTTCAGGGAGATAAGATTTATAGT---T
1 AGATT-----T-ATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAACT
* * * * * *
80168226 TTAATCTCCTCTACTGTAATTTTAGAGAGATA
60 TCAATCTGCTCCACTGCAACTTCAGAGAGATA
* * * * * * * *** *
80168258 AAATTTTCTATCTTAAATCTACACCACTGCAACTTCAGGGAGATTAGA-TTAACG--GCTTCAAT
1 AGA-TTTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAACTTCAAT
* *
80168320 CTACTCCACTGCAACTTAAGAGAGATA
65 CTGCTCCACTGCAACTTCAGAGAGATA
80168347 AGATT
1 AGATT
80168352 CACCATAATG
Statistics
Matches: 505, Mismatches: 114, Indels: 74
0.73 0.16 0.11
Matches are distributed among these distances:
88 45 0.09
89 134 0.27
90 6 0.01
91 5 0.01
94 165 0.33
95 74 0.15
96 35 0.07
97 4 0.01
99 1 0.00
100 36 0.07
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (91 bp):
AGATTTATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTAACTTCAATC
TGCTCCACTGCAACTTCAGAGAGATA
Found at i:80168197 original size:277 final size:277
Alignment explanation
Indices: 80167616--80168241 Score: 663
Period size: 277 Copynumber: 2.2 Consensus size: 277
80167606 GAGATATTAG
* * * *
80167616 TAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTCTACTG
* * * * * *
80167681 CAACTTCAGAGAGATAAGATTAGTAGCTTTAGGCTTTAGTTTATTCCACTGCAACTTCAGGGAGA
66 CAACTGCAGAGAAATAAGATTA-TAG--TTAGGCTTCAATATACTCCACTGCAACTTCAGGGAGA
* * ** * **
80167746 TAAGACTTGCTATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTGGCTTCAATC
128 TAAAACTTGCTAACTTCAATCTGCTCCACTACAACTTCAAAGAGATAAGATTTATAACTTCAATC
* * * * * * * *
80167811 TGCTCCACTGCCACTTTAGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCTATTGTAACT
193 TCCTCCACTGCCAATTTAGAGAGAGAAGATT---C-TGATAACTTAAATATGCTCCACTGCAACT
* * *
80167876 TCATCGAGATAAGATTCGCCATGA
254 TCAGCGAGATAAAATTCACCATGA
*
80167900 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATGGCTTCAATCTGCT-TCACT
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTCT-ACT
* *
80167964 GCAACTGCAGTGAAATAAGATT-T-G-T-GGCTTCAATATGCTCCACTGCAACTTCAGGGAGATA
65 GCAACTGCAGAGAAATAAGATTATAGTTAGGCTTCAATATACTCCACTGCAACTTCAGGGAGATA
* * * *
80168025 AAATTTGTCATGTTAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGATTTATAACTTTA
130 AAACTTG-C----TAACTTCAATCTGCTCCACTACAACTTCAAAGAGATAAGATTTATAACTTCA
* * * *
80168090 ATCTCCTCTACTG-CAATTTCAGAGAGAGAAGATT-TGTTATCTTAAATCTGCTCCACTGCAACT
190 ATCTCCTCCACTGCCAATTT-AGAGAGAGAAGATTCTGATAACTTAAATATGCTCCACTGCAACT
*
80168153 TCAGGGAGATAAAATTCACCATGA
254 TCAGCGAGATAAAATTCACCATGA
* * * * * *
80168177 TAACTTCAATTTGTTCCACTGCAACTTCAGGGAGATAAGATTTATAGTTTTAATCTCCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTCTACTG
80168242 TAATTTTAGA
Statistics
Matches: 287, Mismatches: 47, Indels: 23
0.80 0.13 0.06
Matches are distributed among these distances:
277 134 0.47
278 3 0.01
281 6 0.02
282 67 0.23
283 1 0.00
284 76 0.26
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (277 bp):
TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCTCTACTG
CAACTGCAGAGAAATAAGATTATAGTTAGGCTTCAATATACTCCACTGCAACTTCAGGGAGATAA
AACTTGCTAACTTCAATCTGCTCCACTACAACTTCAAAGAGATAAGATTTATAACTTCAATCTCC
TCCACTGCCAATTTAGAGAGAGAAGATTCTGATAACTTAAATATGCTCCACTGCAACTTCAGCGA
GATAAAATTCACCATGA
Found at i:80168204 original size:139 final size:139
Alignment explanation
Indices: 80167616--80168301 Score: 600
Period size: 139 Copynumber: 4.9 Consensus size: 139
80167606 GAGATATTAG
* * * * * *
80167616 TAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
* * * * * **
80167681 CAACTTCAGAGAGATAAGATTAGTAGCTTTAGGCTTTAGTTTATTCCACTGCAACTTCAGGGAGA
66 CAATTTCAGAGAGATAAGATT--T-G--TTA-TCTTAAATCTGCTCCACTGCAACTTCAGGGAGA
*
80167746 TAAGACTT-G-C-T-A
125 TAA-AATTCGCCATGA
* * * * * * * *
80167758 T--CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
* * * * * * * * * **
80167821 CCACTTT-AGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCTATTGTAACTTCATCGAGA
66 -CAATTTCAGAGAGATAAGATT-----TGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGA
*
80167885 TAAGATTCGCCATGA
125 TAAAATTCGCCATGA
* * *
80167900 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATGGCTTCAATCTGCT-TCACT
1 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTCCTCT-ACT
* * * * ** * *
80167964 GCAACTGCAGTGAAATAAGATTTG-TGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAA
65 GCAATTTCAGAGAGATAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAA
* * *
80168028 TTTGTCATGT
130 TTCGCCATGA
* * * *
80168038 TAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGATTTATAACTTTAATCTCCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
*
80168103 CAATTTCAGAGAGAGAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAAT
66 CAATTTCAGAGAGATAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAAT
*
80168168 TCACCATGA
131 TCGCCATGA
* * * *
80168177 TAACTTCAATTTGTTCCACTGCAACTTCAGGGAGATAAGATTTATAGTTTTAATCTCCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
* * * * *
80168242 TAATTTTAGAGAGATAAAATTT-TCTATCTTAAATCTACACCACTGCAACTTCAGGGAGAT
66 CAATTTCAGAGAGATAAGATTTGT-TATCTTAAATCTGCTCCACTGCAACTTCAGGGAGAT
80168302 TAGATTAACG
Statistics
Matches: 452, Mismatches: 77, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
138 116 0.26
139 181 0.40
140 74 0.16
141 5 0.01
142 4 0.01
143 4 0.01
144 68 0.15
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (139 bp):
TAACTTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
CAATTTCAGAGAGATAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAAT
TCGCCATGA
Found at i:80174390 original size:13 final size:12
Alignment explanation
Indices: 80174358--80174391 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
80174348 CTTATATATA
80174358 TATATAATAACT
1 TATATAATAACT
80174370 TA-ATAATATACT
1 TATATAATA-ACT
80174382 TATATAATAA
1 TATATAATAA
80174392 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:80175052 original size:15 final size:15
Alignment explanation
Indices: 80175020--80175057 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
80175010 CTAATTATCC
80175020 TTAATTAATCTAAAT
1 TTAATTAATCTAAAT
*
80175035 TTACTTAAT-TAAACT
1 TTAATTAATCTAAA-T
80175050 TTAATTAA
1 TTAATTAA
80175058 CCACTCACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATTAATCTAAAT
Found at i:80192520 original size:21 final size:21
Alignment explanation
Indices: 80192496--80192539 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
80192486 AAAAAAATAT
80192496 AAAAA-TAGAATAAATATATAA
1 AAAAATTAGAA-AAATATATAA
* *
80192517 AAAAATTTGAAATATATATAA
1 AAAAATTAGAAAAATATATAA
80192538 AA
1 AA
80192540 TCTAGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (21 bp):
AAAAATTAGAAAAATATATAA
Found at i:80192660 original size:11 final size:10
Alignment explanation
Indices: 80192635--80192672 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 10
80192625 TTACAAAAAT
*
80192635 TAAAAAATTG
1 TAAAAAATTA
80192645 T-AAAAATTA
1 TAAAAAATTA
80192654 TACAAAAATTA
1 TA-AAAAATTA
80192665 TAAAAAAT
1 TAAAAAAT
80192673 AAAAAATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 8 0.32
10 7 0.28
11 10 0.40
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
TAAAAAATTA
Done.