Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 238 of 311
Found at i:80193069 original size:19 final size:20
Alignment explanation
Indices: 80193039--80193079 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
80193029 AGTCAAAAGT
80193039 ATTTATAATTTTT-TATTTAA
1 ATTTATAATTTTTAT-TTTAA
80193059 ATTTA-AATTTTTATTTTAA
1 ATTTATAATTTTTATTTTAA
80193078 AT
1 AT
80193080 AAAATTGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTATAATTTTTATTTTAA
Found at i:80193084 original size:18 final size:18
Alignment explanation
Indices: 80193048--80193085 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80193038 TATTTATAAT
*
80193048 TTTTTATTTAAATTTAAA
1 TTTTTATTTAAATTAAAA
80193066 TTTTTATTTTAAA-TAAAA
1 TTTTTA-TTTAAATTAAAA
80193084 TT
1 TT
80193086 GCCACATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTATTTAAATTAAAA
Found at i:80194731 original size:24 final size:25
Alignment explanation
Indices: 80194689--80194735 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
80194679 TAAAAATACA
*
80194689 AGATTTGTGTTTTTTTTTTGTCAAC
1 AGATTTGTGATTTTTTTTTGTCAAC
80194714 AGATTTGT-ATTTTTTTTTGTCA
1 AGATTTGTGATTTTTTTTTGTCA
80194736 GAAGACTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.17, C:0.06, G:0.15, T:0.62
Consensus pattern (25 bp):
AGATTTGTGATTTTTTTTTGTCAAC
Found at i:80195015 original size:34 final size:33
Alignment explanation
Indices: 80194943--80195017 Score: 80
Period size: 33 Copynumber: 2.2 Consensus size: 33
80194933 TATCAAAATT
* * * *
80194943 ATTTAAAAAATATTTAATATATGTATATTTTAAT
1 ATTT-AAAAATATTAAATAAATGTATATTATAAA
80194977 ATTTAAAAATATTAAATAAATG-ATATTAAATAAA
1 ATTTAAAAATATTAAATAAATGTATATT--ATAAA
80195011 ATTTAAA
1 ATTTAAA
80195018 TATAAAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 5 0.14
33 16 0.46
34 14 0.40
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.43
Consensus pattern (33 bp):
ATTTAAAAATATTAAATAAATGTATATTATAAA
Found at i:80195016 original size:11 final size:12
Alignment explanation
Indices: 80194982--80195019 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 12
80194972 TTAATATTTA
80194982 AAAATATTAAAT
1 AAAATATTAAAT
80194994 AAATGATATTAAAT
1 AAA--ATATTAAAT
80195008 AAAAT-TTAAAT
1 AAAATATTAAAT
80195019 A
1 A
80195020 TAAAATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.29
12 5 0.21
14 12 0.50
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
AAAATATTAAAT
Found at i:80207908 original size:126 final size:122
Alignment explanation
Indices: 80207742--80208173 Score: 438
Period size: 125 Copynumber: 3.5 Consensus size: 122
80207732 ACATAAGGAC
* * *
80207742 ATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTACGACTTTTTCATTCA
1 ATATTTCGTATTTGGGAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGA-TTTTTCATTCA
* * * *
80207807 ACTGAACTATGGAATATCCTTGTGAGATTTCATCAATGTTTTCTTGAATTAAAACGAGGCA
65 ACTGAAATACGGAATATCCTT-TGAGATTTCATCCATGTTTTCTTAAATTAAAA--AGGCA
* * * *
80207868 ATATTTCGTGTTTGGGAGCTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTTCGTTC
1 ATATTTCGTATTTGGGAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTTCATTC
*
80207933 AACTGAAATACGGAATATCCTTTG-GAATTTTCATCCATGCTTTT-TTAAATTAAAATGG-A
64 AACTGAAATACGGAATATCCTTTGAG-A-TTTCATCCATG-TTTTCTTAAATTAAAAAGGCA
* * * * ** *
80207992 GTATTTCGTATTTGGGGAGTTTGGGAGATCGTGCCCGATCGTGCTTTGTTTCGATTTTTCATTCG
1 ATATTTCGTATTT-GGGAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCA
* ** * * * *
80208057 ACTAAAATACAAAATATCATTTTGAAATTTCATCCATGTTTTCTCAAATTAAAATAATGCA
65 ACTGAAATACGGAATATC-CTTTGAGATTTCATCCATGTTTTCTTAAATT-AAA-AAGGCA
* * * * * *
80208118 ATGTTTCGTATTTGGAAATTCGATAAATTGTGCCCAATCGTGCTGGGTTTCGATTT
1 ATATTTCGTATTTGGGAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
80208174 ACCGTTTGAG
Statistics
Matches: 255, Mismatches: 40, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
122 4 0.02
123 41 0.16
124 20 0.08
125 73 0.29
126 64 0.25
127 49 0.19
128 4 0.02
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (122 bp):
ATATTTCGTATTTGGGAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCAA
CTGAAATACGGAATATCCTTTGAGATTTCATCCATGTTTTCTTAAATTAAAAAGGCA
Found at i:80211833 original size:14 final size:14
Alignment explanation
Indices: 80211794--80211834 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
80211784 TTATTAAGTA
80211794 ATTAATAATATTTAT
1 ATTAAT-ATATTTAT
* *
80211809 ATTATTCTATTTAT
1 ATTAATATATTTAT
80211823 ATTAATATATTT
1 ATTAATATATTT
80211835 CGATTTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATATATTTAT
Found at i:80213721 original size:40 final size:40
Alignment explanation
Indices: 80213553--80213713 Score: 137
Period size: 40 Copynumber: 3.9 Consensus size: 40
80213543 GGAGTAGCGT
* * *
80213553 TAGCAGCGTTTTTCCCATAAACGTTGCGAAAGGTGAAGA-AA
1 TAGCAGCG-TTTTCCCATAAACGCTGCTAAAGGT-AAAACAA
* * * *
80213594 TAGCGGCATTTTCCCCTAAACGCAGCTAAAGGTATAACAACAA
1 TAGCAGCGTTTTCCCATAAACGCTGCTAAAGG--TAA-AACAA
* * * *
80213637 TAGCGATG-TTTTTCCCATAAACACCGCAAAAGGTAAAACAA
1 TAGC-A-GCGTTTTCCCATAAACGCTGCTAAAGGTAAAACAA
*
80213678 TAGCAGCGTTTTCCCATAAACGCTGTTAAAGGTAAA
1 TAGCAGCGTTTTCCCATAAACGCTGCTAAAGGTAAA
80213714 GTAATAGCGG
Statistics
Matches: 95, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
39 1 0.01
40 45 0.47
41 17 0.18
42 5 0.05
43 6 0.06
44 20 0.21
45 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (40 bp):
TAGCAGCGTTTTCCCATAAACGCTGCTAAAGGTAAAACAA
Found at i:80213851 original size:25 final size:25
Alignment explanation
Indices: 80213817--80213875 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
80213807 CCTCAAATCG
* *
80213817 TTTTCCCCAAATCCCTAACTTAGTT
1 TTTTCCCCAAATCCCTAACATAATT
*
80213842 TTTTCCCCAATTCCCTAACATAATT
1 TTTTCCCCAAATCCCTAACATAATT
*
80213867 TTTTTCCCA
1 TTTTCCCCA
80213876 TCCGTCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.32, G:0.02, T:0.42
Consensus pattern (25 bp):
TTTTCCCCAAATCCCTAACATAATT
Found at i:80222538 original size:13 final size:14
Alignment explanation
Indices: 80222504--80222540 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
80222494 TATTTATAAA
*
80222504 AAATATATTATTTT
1 AAATATATTATATT
80222518 AAAT-TATT-TATT
1 AAATATATTATATT
80222530 AAATATATTAT
1 AAATATATTAT
80222541 TTGTATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 7 0.35
13 8 0.40
14 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
AAATATATTATATT
Found at i:80222740 original size:28 final size:30
Alignment explanation
Indices: 80222660--80222742 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 30
80222650 TGCGCAAATC
* *
80222660 AACTACCTTTTTTAGTTGAAATAATTTTATCA
1 AACTA-CTTTTTTAGCTGAAATACTTTTAT-A
* * *
80222692 AACTACCTTTTTAACTTAAATACTTTT-T-
1 AACTACTTTTTTAGCTGAAATACTTTTATA
*
80222720 ATCTACTTTTTTAGCTGAAATAC
1 AACTACTTTTTTAGCTGAAATAC
80222743 CAATTTAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
28 19 0.45
30 1 0.02
31 17 0.40
32 5 0.12
ACGTcount: A:0.33, C:0.16, G:0.05, T:0.47
Consensus pattern (30 bp):
AACTACTTTTTTAGCTGAAATACTTTTATA
Found at i:80223750 original size:28 final size:28
Alignment explanation
Indices: 80223719--80223772 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
80223709 GCATTTTAGT
* *
80223719 AAAAACGAAT-CATTTCCGTTATTTTTG
1 AAAAAAGAATCCATTTCCGTAATTTTTG
*
80223746 AAAAAAGAGTCCATTTCCGTAATTTTT
1 AAAAAAGAATCCATTTCCGTAATTTTT
80223773 TTTGGAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (28 bp):
AAAAAAGAATCCATTTCCGTAATTTTTG
Found at i:80224311 original size:12 final size:12
Alignment explanation
Indices: 80224296--80224330 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
80224286 TATTATATTT
80224296 TTATTTTATAAA
1 TTATTTTATAAA
*
80224308 TTATTTTATAAT
1 TTATTTTATAAA
80224320 TTATATTTATA
1 TTAT-TTTATA
80224331 TTTTTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATTTTATAAA
Found at i:80224333 original size:12 final size:13
Alignment explanation
Indices: 80224282--80224330 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
80224272 TTTTCTAAAT
80224282 TTTATA-TTAT-A
1 TTTATATTTATAA
*
80224293 TTTTTATTTTATAA
1 TTTATA-TTTATAA
*
80224307 ATTAT-TTTATAA
1 TTTATATTTATAA
80224319 TTTATATTTATA
1 TTTATATTTATA
80224331 TTTTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 5 0.17
12 11 0.37
13 10 0.33
14 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTATATTTATAA
Found at i:80224340 original size:20 final size:20
Alignment explanation
Indices: 80224267--80224341 Score: 59
Period size: 19 Copynumber: 3.8 Consensus size: 20
80224257 AAAGTCAAAG
80224267 TATAGTTTTCTAAATTT-TATAT
1 TATA-TTTT-TAAATTTATAT-T
* **
80224289 TATATTTTT-ATTTTATAAA
1 TATATTTTTAAATTTATATT
80224308 T-TA-TTTTATAATTTATATT
1 TATATTTTTA-AATTTATATT
80224327 TATATTTTTAAATTT
1 TATATTTTTAAATTT
80224342 TTTTTAAGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
17 4 0.10
18 2 0.05
19 13 0.31
20 10 0.24
21 9 0.21
22 4 0.10
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (20 bp):
TATATTTTTAAATTTATATT
Found at i:80224347 original size:32 final size:32
Alignment explanation
Indices: 80224280--80224345 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
80224270 AGTTTTCTAA
*
80224280 ATTTTAT-A-TTATATTTTTATTTTATAAATT
1 ATTTTATAATTTATATTTATATTTTATAAATT
80224310 ATTTTATAATTTATATTTATATTTT-TAAATT
1 ATTTTATAATTTATATTTATATTTTATAAATT
*
80224341 TTTTT
1 ATTTT
80224346 TAAGAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 7 0.22
31 11 0.34
32 14 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (32 bp):
ATTTTATAATTTATATTTATATTTTATAAATT
Found at i:80226004 original size:19 final size:20
Alignment explanation
Indices: 80225964--80226005 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
80225954 TATTATTAGA
*
80225964 TAAAAGTTTATATTAATTTT
1 TAAAAGATTATATTAATTTT
*
80225984 TAAAAGATTAT-TTATTTTT
1 TAAAAGATTATATTAATTTT
80226003 TAA
1 TAA
80226006 TTTTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TAAAAGATTATATTAATTTT
Found at i:80235783 original size:21 final size:21
Alignment explanation
Indices: 80235749--80235789 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80235739 AGACGAGCAA
* *
80235749 TACTCCACAGCAGGTAGAGTG
1 TACTCCAAAACAGGTAGAGTG
*
80235770 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTAGAGT
80235790 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:80242383 original size:9 final size:9
Alignment explanation
Indices: 80242335--80242386 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
80242325 CAATTTATTG
*
80242335 ATATATTAT
1 ATATATTTT
*
80242344 ATCTATTTT
1 ATATATTTT
80242353 AT-T-TTTT
1 ATATATTTT
*
80242360 ATATATTCT
1 ATATATTTT
*
80242369 AAATATTTT
1 ATATATTTT
80242378 ATATATTTT
1 ATATATTTT
80242387 TATTTCTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 6 0.17
8 2 0.06
9 27 0.77
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (9 bp):
ATATATTTT
Found at i:80242609 original size:15 final size:15
Alignment explanation
Indices: 80242586--80242615 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80242576 GCCTTGTTTC
*
80242586 AATATGTGAATCAAT
1 AATAAGTGAATCAAT
80242601 AATAAGTGAATCAAT
1 AATAAGTGAATCAAT
80242616 GAATGAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (15 bp):
AATAAGTGAATCAAT
Found at i:80245881 original size:49 final size:47
Alignment explanation
Indices: 80245755--80246076 Score: 191
Period size: 46 Copynumber: 6.8 Consensus size: 47
80245745 AGGGTATAAT
* *
80245755 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
* * * * * * *
80245802 GTCAATGTCATGTCCTAGACATGCTTTTACATTGACT-ATCGAAATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATCAA
* * **
80245850 GGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATCCGT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCA-AT-CAA
* * * *
80245901 GCCGATGCCATATCCCAGACATGGTTTTACACTGACACATC--TCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATC-AA
* *
80245947 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC--TCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCAATC-AA
** * * **
80245993 GTTGATG-CATGTCCCAAACAT-GTCTGACACT-AGCTC-TCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC-AATCAA
* *
80246038 TGCCGATGTCATGTCCCAGATATGGTCTTACACTGACTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC
80246077 TCATAATGTG
Statistics
Matches: 211, Mismatches: 44, Indels: 39
0.72 0.15 0.13
Matches are distributed among these distances:
43 2 0.01
44 12 0.06
45 16 0.08
46 53 0.25
47 41 0.19
48 20 0.09
49 29 0.14
50 33 0.16
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
Found at i:80245917 original size:50 final size:46
Alignment explanation
Indices: 80245755--80245978 Score: 161
Period size: 50 Copynumber: 4.7 Consensus size: 46
80245745 AGGGTATAAT
* * *
80245755 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT--ATCGTA
* * * * * * * * *
80245802 GTCAATGTCATGTCCTAGACATGCTTTTACATTGACTATCGAAATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-C-ATATCGTA
* *
80245850 GGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G---ACACATAT-CGTA
* * *
80245901 GCCGATGCCATATCCCAGACATGGTTTTACACTGACACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGTA
80245947 GCCGATG-CATGTCCCAGACAT-GTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
80245979 GCTTACATCT
Statistics
Matches: 138, Mismatches: 28, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 13 0.09
47 28 0.20
48 5 0.04
49 27 0.20
50 35 0.25
51 2 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGTA
Found at i:80245987 original size:46 final size:48
Alignment explanation
Indices: 80245859--80246117 Score: 193
Period size: 46 Copynumber: 5.5 Consensus size: 48
80245849 AGGCCGACGC
* *
80245859 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGTAGCCGATG
* * *
80245908 CCATATCCCAGACATGGTTTTACACT-G-AC-ACATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGCCGATG
**
80245954 CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCG-AGGTTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GCCGATG
* * * * *
80246000 CATGTCCCAAACAT-GTCTGACACTAGCTCT-CGTCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GCCGATG
* * * * *
80246046 TCATGTCCCAGATATGGTCTTACACTGACTCT-CATAAT-GTGGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGTAGCCGATG
* *
80246094 CATGTCTCAAACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
80246118 AGCACACAAA
Statistics
Matches: 169, Mismatches: 29, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
44 9 0.05
45 18 0.11
46 71 0.42
47 24 0.14
48 22 0.13
49 2 0.01
50 23 0.14
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGCCGATG
Found at i:80246066 original size:94 final size:92
Alignment explanation
Indices: 80245947--80246120 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
80245937 ACATCTCGTA
* * *
80245947 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGTTGATGCATGTCCCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTCT-CATAAT-GAGGTCGATGCATGTCCCAA
80246010 ACATGTCTGACACTAGCTCTCGTCTCAAT
64 ACATGTCTGACACTAGCTCTCGTCTCAAT
* * *
80246039 GCCGATGTCATGTCCCAGATATGGTCTTACACTGACTCTCATAATGTGGTCGATGCATGTCTCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTCTCATAATGAGGTCGATGCATGTCCCAA
*
80246104 ACATGTCTTACACTAGC
64 ACATGTCTGACACTAGC
80246121 ACACAAATAA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 49 0.69
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTCTCATAATGAGGTCGATGCATGTCCCAAAC
ATGTCTGACACTAGCTCTCGTCTCAAT
Found at i:80251664 original size:24 final size:26
Alignment explanation
Indices: 80251611--80251664 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
80251601 GAGAAACATT
*
80251611 TATATTAATATTTTTAGTGTTTTTGA
1 TATATTAATATTTTTAATGTTTTTGA
80251637 TATATT-ATATTTTTTAAT-TTTTTG-
1 TATATTAATA-TTTTTAATGTTTTTGA
80251661 TATA
1 TATA
80251665 AAAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 4 0.15
25 9 0.35
26 13 0.50
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (26 bp):
TATATTAATATTTTTAATGTTTTTGA
Found at i:80255765 original size:30 final size:29
Alignment explanation
Indices: 80255723--80255782 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
80255713 TCCTTTTCTC
* * *
80255723 TTTTTTTAATAAATGGCCCAATATTTTTA
1 TTTTTTTAATAAATGACACAATATCTTTA
*
80255752 TTTTTTTGCATAAATGACACAATATCTTTA
1 TTTTTTT-AATAAATGACACAATATCTTTA
80255782 T
1 T
80255783 ACTTCTCCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.50
Consensus pattern (29 bp):
TTTTTTTAATAAATGACACAATATCTTTA
Found at i:80256603 original size:6 final size:6
Alignment explanation
Indices: 80256576--80256614 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
80256566 CTCCTCCTCA
* * *
80256576 TTTTCT TCTTCT TTTTCG TTTTAT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTT
80256615 ATTGCCCAGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:80256605 original size:18 final size:17
Alignment explanation
Indices: 80256584--80256617 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
80256574 CATTTTCTTC
80256584 TTCTTTTTCGTTTTATTT
1 TTCTTTTTC-TTTTATTT
80256602 TTCTTTTTCTTTTATT
1 TTCTTTTTCTTTTATT
80256618 GCCCAGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (17 bp):
TTCTTTTTCTTTTATTT
Found at i:80257424 original size:15 final size:16
Alignment explanation
Indices: 80257403--80257438 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
80257393 AATTTTATTT
80257403 TAATAATAATTTTAAA
1 TAATAATAATTTTAAA
80257419 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
80257434 TAATA
1 TAATA
80257439 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:80262810 original size:14 final size:14
Alignment explanation
Indices: 80262791--80262820 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80262781 CCAGAAAAGT
80262791 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
80262805 AAATCATTTTTCAG
1 AAATCATTTTCCAG
80262819 AA
1 AA
80262821 GTAATTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:80279160 original size:249 final size:249
Alignment explanation
Indices: 80278714--80279168 Score: 695
Period size: 249 Copynumber: 1.8 Consensus size: 249
80278704 GGTCAAATAA
* * * *
80278714 GAACTACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTACATC
1 GAACTACTGTAGAAAAAAAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAATACATC
* *
80278779 CTGCTTAAAGCGTTTTTGACACCATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGGAACT
66 CTGCTTAAAGCGTTTTTGACACCATTTTTCAGAACCGTATTCTCAAAATTATTTTTTCAGGAACT
* *
80278844 ACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCATGCT
131 ACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCATCATGCT
80278909 TGAAGCGTTTTTTACACCATTTTTTCAGAACCATTTTCTCAATTATTTTTTCAG
196 TGAAGCGTTTTTTACACCATTTTTTCAGAACCATTTTCTCAATTATTTTTTCAG
* * *
80278963 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCATTTTTT-AGTAATTTTGCTGACAATGCAT
1 GAACTACTGTAGAAAAAAAGCATCCACGTGGGAGC-TTTTTTCAGTAATTTTGCTAACAATACAT
* *
80279027 CCTGCTTAAAGCGTTTTTGA-ATCTATTTTTTTA-AAGCCGTATTCTCAAAATTA-TTTTTCAGG
65 CCTGCTTAAAGCGTTTTTGACA-CCA-TTTTTCAGAA-CCGTATTCTCAAAATTATTTTTTCAGG
* *
80279089 AATTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCATTAATTTTGCTAACAGTGCATTC
127 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCA-TC
80279154 -TGCTTGAAGCGTTTT
191 ATGCTTGAAGCGTTTT
80279169 GACATTATCT
Statistics
Matches: 186, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
248 1 0.01
249 156 0.84
250 29 0.16
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (249 bp):
GAACTACTGTAGAAAAAAAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAATACATC
CTGCTTAAAGCGTTTTTGACACCATTTTTCAGAACCGTATTCTCAAAATTATTTTTTCAGGAACT
ACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCATCATGCT
TGAAGCGTTTTTTACACCATTTTTTCAGAACCATTTTCTCAATTATTTTTTCAG
Found at i:80279229 original size:125 final size:126
Alignment explanation
Indices: 80278714--80279207 Score: 635
Period size: 125 Copynumber: 4.0 Consensus size: 126
80278704 GGTCAAATAA
* * * *
80278714 GAACTACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTACATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * *
80278779 CTGCTTAAAGCGTTTTTGACACCA-TTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCATCTTCTCAAAATTAATTTTTCAG
*
80278839 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * * * *
80278904 ATGCTTGAAGCGTTTTTTACACCATTTTTTCAGAACCATTTTCTC--AATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCATCTTCTCAAAATTAATTTTTCAG
* * *
80278963 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCATTTTTT-AGTAATTTTGCTGACAATGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTTCAGTAATTTTGCTAACAGTGCAT
* * * *
80279027 CCTGCTTAAAGCGTTTTTGA-ATCTATTTTTTTA-AAGCCGTATTCTCAAAATT-ATTTTTCAG
65 CCTGCTTAAAGCGTTTTTGACA-CCATTTTTTCAGAA-CCATCTTCTCAAAATTAATTTTTCAG
* * * *
80279088 GAATTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCATTAATTTTGCTAACAGTGCATT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* ** * * *
80279153 CTGCTTGAAGCG-TTTTGACATTATCTTTTCATAACTATCTTCTCAAAATTAATTT
66 CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCATCTTCTCAAAATTAATTT
80279208 ATCTGAAACA
Statistics
Matches: 324, Mismatches: 35, Indels: 20
0.85 0.09 0.05
Matches are distributed among these distances:
123 3 0.01
124 136 0.42
125 164 0.51
126 21 0.06
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCATCTTCTCAAAATTAATTTTTCAG
Found at i:80279333 original size:34 final size:33
Alignment explanation
Indices: 80279285--80279419 Score: 155
Period size: 34 Copynumber: 3.9 Consensus size: 33
80279275 CTAAACACAA
80279285 AATTATTTTAAAAAACCCTAAACCCTAATTTAATT
1 AATT-TTTT-AAAAACCCTAAACCCTAATTTAATT
*
80279320 AATTTTCTTAAAAACTCTAAACCCTAATTTAATT
1 AATTTT-TTAAAAACCCTAAACCCTAATTTAATT
* *
80279354 TATTTATTT-AAAACCCTTAAAACCTAATTTAATT
1 AATTT-TTTAAAAACCC-TAAACCCTAATTTAATT
* *
80279388 AATTTTTTAAAAAAACTCTAAACCTTAATTTA
1 AATTTTTT--AAAAACCCTAAACCCTAATTTA
80279420 TTTTTAAAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
33 9 0.10
34 52 0.60
35 19 0.22
36 6 0.07
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.41
Consensus pattern (33 bp):
AATTTTTTAAAAACCCTAAACCCTAATTTAATT
Found at i:80288888 original size:25 final size:27
Alignment explanation
Indices: 80288860--80288916 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
80288850 ATTAGATTTT
*
80288860 ATTTTATATATGTA-TATT-ATTT-CAA
1 ATTTTA-ACATGTATTATTCATTTGCAA
*
80288885 ATTTTAGCATGTATTATTCATTTGCAA
1 ATTTTAACATGTATTATTCATTTGCAA
80288912 ATTTT
1 ATTTT
80288917 TCATATGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.19
25 10 0.37
26 4 0.15
27 8 0.30
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (27 bp):
ATTTTAACATGTATTATTCATTTGCAA
Found at i:80294999 original size:64 final size:63
Alignment explanation
Indices: 80294925--80295050 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 63
80294915 CATTCATAAC
* *
80294925 ACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTAACATAAGCATT
1 ACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCT-ATCATTTAACATAAGCATT
* * **
80294989 ACATCTAGTTAGGAGCATTTGATTTATTTCGATCATATCATCCTATCATTTGGCATAAGCAT
1 ACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTATCATTTAACATAAGCAT
80295051 AGATACATGA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
63 15 0.27
64 41 0.73
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (63 bp):
ACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTATCATTTAACATAAGCATT
Found at i:80295352 original size:131 final size:131
Alignment explanation
Indices: 80295114--80295382 Score: 457
Period size: 131 Copynumber: 2.1 Consensus size: 131
80295104 ATCAGTGAAT
80295114 TTGCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTA
1 TTGCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTA
** *
80295179 ACCAGTAGTGGGGCAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGAAGTAGGCTGATG
66 ACCAGTAGTGGACCAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGAAGTAGGCTGAAG
80295244 A
131 A
* * *
80295245 TTGCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATTGAAGATGGTGGATCTTGTCTCCCTA
1 TTGCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTA
* * *
80295310 ACCAGTAGTGGACCAGATTTAAGCCACCATCTTATCTTCCTAAGTAGTAGTGGAGTAGGCTGAAG
66 ACCAGTAGTGGACCAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGAAGTAGGCTGAAG
80295375 A
131 A
80295376 TTGCAGA
1 TTGCAGA
80295383 AATTATCTCC
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 129 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (131 bp):
TTGCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTA
ACCAGTAGTGGACCAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGAAGTAGGCTGAAG
A
Found at i:80295823 original size:44 final size:44
Alignment explanation
Indices: 80295775--80295910 Score: 113
Period size: 44 Copynumber: 3.1 Consensus size: 44
80295765 ACAGTTCGTA
*
80295775 TCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCT
1 TCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAGTCTCT
* * ** * *
80295819 TCTCCCTGAGATGGCTT-A--GGAGCGGCTC-AGAGCCAC-AGT-TCGT
1 TCTCCTTGA-A--GTTTCAGCGGAGTAGATCGAG-GCTACAAGTCTC-T
80295862 ATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAGTCTCT
1 -TCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAGTCTCT
80295907 TCTC
1 TCTC
80295911 AATAAAATGG
Statistics
Matches: 67, Mismatches: 13, Indels: 24
0.64 0.12 0.23
Matches are distributed among these distances:
41 3 0.04
42 3 0.04
43 6 0.09
44 42 0.63
45 7 0.10
46 3 0.04
47 3 0.04
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (44 bp):
TCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAGTCTCT
Found at i:80295921 original size:88 final size:89
Alignment explanation
Indices: 80295685--80295929 Score: 345
Period size: 88 Copynumber: 2.8 Consensus size: 89
80295675 CAACAATTCT
* * * * * *
80295685 TATCTCCTTGAAGTTCCAGCGAAGAAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGACATTA
1 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTA
80295750 -GAGCGGCTCGAAACCACAGTTCG
66 GGAGCGGCTCGAAACCACAGTTCG
* *
80295773 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAGATGGC-TTA
1 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTA
*
80295837 GGAGCGGCTC-AGAGCCACAGTTCG
66 GGAGCGGCTCGA-AACCACAGTTCG
* * *
80295861 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAGTCTCTTCTCAATAAAATGGCATT-
1 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTA
80295925 GGAGC
66 GGAGC
80295930 AGACTGAATA
Statistics
Matches: 141, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
87 4 0.03
88 135 0.96
89 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (89 bp):
TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTA
GGAGCGGCTCGAAACCACAGTTCG
Found at i:80295953 original size:88 final size:87
Alignment explanation
Indices: 80295685--80295977 Score: 333
Period size: 88 Copynumber: 3.3 Consensus size: 87
80295675 CAACAATTCT
* * * * * * *
80295685 TATCTCCTTGAAGTTCCAGCGAAGAAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGACATTA
1 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTG
80295750 GAGCGGCTCGAAACCACAGTTCG
66 GAGCGGCT-GAAACCACAGTTCG
* *
80295773 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAGATGGC-TTA
1 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATT-
* *
80295837 GGAGCGGCTCAGAGCCACAGTTCG
65 GGAGCGGCTGA-AACCACAGTTCG
* * *
80295861 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAGTCTCTTCTCAATAAAATGGCATTG
1 TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTG
* *
80295926 GAGCAGACTGAATATACCA-A-TT-T
66 GAGC-GGCTG-A-A-ACCACAGTTCG
* *
80295949 TATCTCCTTGAAGTTGCAGTGGAGTAGAT
1 TATCTCCTTGAAGTTTCAGCGGAGTAGAT
80295978 TGAAGCCACA
Statistics
Matches: 177, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
87 3 0.02
88 161 0.91
89 7 0.04
90 3 0.02
91 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (87 bp):
TATCTCCTTGAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCATGAAATGGCATTG
GAGCGGCTGAAACCACAGTTCG
Found at i:80296005 original size:44 final size:43
Alignment explanation
Indices: 80295948--80296328 Score: 248
Period size: 44 Copynumber: 8.6 Consensus size: 43
80295938 TATACCAATT
* *
80295948 TTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAACC
1 TTATCTCC-TGAAGTTGCAGTGGAGCAGATTGAAGTCACAAACC
* * **
80295992 TTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACAAGTC
1 TTATC-TCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAACC
* * * * ** *
80296036 TTATCTCCCTGAAGTTGCAGCGGACCAGACTGAGAAT-AGTGAATC
1 TTATCT-CCTGAAGTTGCAGTGGAGCAGATTGA-AGTCA-CAAACC
* * * * *
80296081 TTATCTCTCTAAAATTGCAGTAGAGCAGAGTTAAAG-CTATAAACC
1 TTATCTC-CTGAAGTTGCAGTGGAGCAGA-TTGAAGTC-ACAAACC
* * * *
80296126 TTATCTCCTTGAAGTTGCAGTGGGGCAGGTTGAAGTTACAAGTCC
1 TTATCTCC-TGAAGTTGCAGTGGAGCAGATTGAAGTCACAA-ACC
** * * * ** *
80296171 -TATCTCCCTGAAGTTGCAGTGGAGTGGATCGAAAATGATGAATC
1 TTATCT-CCTGAAGTTGCAGTGGAGCAGATTG-AAGTCACAAACC
* * *
80296215 TTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACAAACC
1 TTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAACC
* * * **
80296259 TTATCCCTCTGAAGTTGCAGTGGGGCA-AGTTGAAGTTACAAGTC
1 TTATCTC-CTGAAGTTGCAGTGGAGCAGA-TTGAAGTCACAAACC
80296303 TTATCTCCTTGAAGTTGCAGTGGAGC
1 TTATCTCC-TGAAGTTGCAGTGGAGC
80296329 GGAATAAAGA
Statistics
Matches: 256, Mismatches: 64, Indels: 34
0.72 0.18 0.10
Matches are distributed among these distances:
43 4 0.02
44 155 0.61
45 94 0.37
46 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
TTATCTCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAACC
Found at i:80296043 original size:176 final size:175
Alignment explanation
Indices: 80295655--80296059 Score: 383
Period size: 176 Copynumber: 2.3 Consensus size: 175
80295645 TCCCTAAGCA
* * *
80295655 GTAGTGGAGCAGGTTAAAATCAACAATTCTTATCTCCTTGAAGTTCCAGCGAAGAAGATCGAAGC
1 GTAGTGGAGCAGGTTAAAGTC-ACAAGTCTTATCTCCTTGAAGTTCCAGCGGAGAAGATCGAAGC
** * *
80295720 TACAAATCTCTTCTCCTTGAAATGACATTAGAGCGGCTCGAAACCACAGTTCGTATCTCCTTGAA
65 TACAAATCTCTTCTCAATAAAATGACATTAGAGCGACTCGAAACCACAGTTCGTATCTCCTTGAA
* * * *
80295785 GTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAGAT
130 GTTGCAGCGGAGTAGATCGAAGCCACAAACCTCTTCTCCCTGAGAT
*** * * * * * * *
80295831 GGCTTAGGAGC-GGCTCAGAGCCAC-AGTTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAG
1 GTAGT-GGAGCAGG-TTAAAGTCACAAG-TCTTATCTCCTTGAAGTTCCAGCGGAGAAGATCGAA
* * * *
80295894 GCTACAAGTCTCTTCTCAATAAAATGGCATTGGAGCAGACT-GAATATACCA-A-TT-TTATCTC
63 GCTACAAATCTCTTCTCAATAAAATGACATTAGAGC-GACTCG-A-A-ACCACAGTTCGTATCTC
* * * *
80295955 CTTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAACCT-TATCTTCCTGAAGTT
124 CTTGAAGTTGCAGCGGAGTAGATCGAAGCCACAAACCTCT-TCTCCCTG-AGAT
* * *
80296008 GTAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAGCGGA
1 GTAGTGGAGCAGGTTAAAGTCACAAGTCTTATCTCCTTGAAGTTCCAGCGGA
80296060 CCAGACTGAG
Statistics
Matches: 179, Mismatches: 39, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
175 2 0.01
176 147 0.82
177 24 0.13
178 2 0.01
179 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (175 bp):
GTAGTGGAGCAGGTTAAAGTCACAAGTCTTATCTCCTTGAAGTTCCAGCGGAGAAGATCGAAGCT
ACAAATCTCTTCTCAATAAAATGACATTAGAGCGACTCGAAACCACAGTTCGTATCTCCTTGAAG
TTGCAGCGGAGTAGATCGAAGCCACAAACCTCTTCTCCCTGAGAT
Found at i:80296139 original size:134 final size:133
Alignment explanation
Indices: 80295948--80296322 Score: 443
Period size: 134 Copynumber: 2.8 Consensus size: 133
80295938 TATACCAATT
* * * * * * *
80295948 TTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAACCTTATCTTCC-TGAAGTTGTAG
1 TTATCTCCCTAAAATTGCAGTAGAGCAGATTAAAGCCACAAACCTTATC-TCCTTGAAGTTGCAG
* * *
80296012 TGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAGCGGACCAGA-CTGAGAAT-AG
65 TGGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGCGGACCAGATC-GAAAATGA-
80296075 TGAATC
128 TGAATC
* * *
80296081 TTATCTCTCTAAAATTGCAGTAGAGCAGAGTTAAAGCTATAAACCTTATCTCCTTGAAGTTGCAG
1 TTATCTCCCTAAAATTGCAGTAGAGCAGA-TTAAAGCCACAAACCTTATCTCCTTGAAGTTGCAG
* * ***
80296146 TGGGGCAGGTTGAAGTTACAAGTCCTATCTCCCTGAAGTTGCAGTGGAGTGGATCGAAAATGATG
65 TGGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGCGGACCAGATCGAAAATGATG
80296211 AATC
130 AATC
* * * * * *
80296215 TTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACAAACCTTATC-CCTCTGAAGTTGCAG
1 TTATCTCCCTAAAATTGCAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCT-TGAAGTTGCAG
* *
80296279 TGGGGCAAGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGCAG
65 TGGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAG
80296323 TGGAGCGGAA
Statistics
Matches: 207, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
132 3 0.01
133 95 0.46
134 107 0.52
135 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (133 bp):
TTATCTCCCTAAAATTGCAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTGCAGT
GGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGCGGACCAGATCGAAAATGATGA
ATC
Found at i:80296361 original size:133 final size:132
Alignment explanation
Indices: 80295948--80296377 Score: 492
Period size: 133 Copynumber: 3.2 Consensus size: 132
80295938 TATACCAATT
* * *
80295948 TTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAACCTTAT-CTTCCTGAAGTTGTAG
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACCTTATCCCT-CTGAAGTTGCAG
* * * * * * * *
80296012 TGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAGCGGACCAGACTGAGAATAGTG
65 TGGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGAAT-AGAAAAGAG
80296077 AATC
129 AATC
* * * * * *
80296081 TTATCT-CTCTAAAATTGCAGTAGAGCAGAGTTAAAGCTATAAACCTTATCTCCT-TGAAGTTGC
1 TTATCTCCT-TGAAGTTGCAGTGGAGCAGA-TTGAAGCCACAAACCTTATC-CCTCTGAAGTTGC
* * *
80296144 AGTGGGGCAGGTTGAAGTTACAAGTCCTATCTCCCTGAAGTTGCAGTGGAGTGG-ATCGAAAATG
63 AGTGGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGAATAGAAAA-G
80296208 ATGAATC
127 A-GAATC
* * *
80296215 TTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACAAACCTTATCCCTCTGAAGTTGCAGT
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACCTTATCCCTCTGAAGTTGCAGT
* * *
80296280 GGGGCAAGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCGGAATAAAGAAAACAG
66 GGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGAAT--AGAAAAGAG
80296345 -ATC
129 AATC
* *
80296348 TTATCTCCTTGAAGTTGTAATGGAGCAGAT
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGAT
80296378 CAAGCTATAA
Statistics
Matches: 248, Mismatches: 38, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
132 9 0.04
133 130 0.52
134 100 0.40
135 2 0.01
136 7 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
TTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACCTTATCCCTCTGAAGTTGCAGT
GGGGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGAATAGAAAAGAGAA
TC
Found at i:80298610 original size:25 final size:27
Alignment explanation
Indices: 80298582--80298638 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
80298572 ATTAGATTTT
*
80298582 ATTTTATATATGTA-TATT-ATTT-CAA
1 ATTTTA-ACATGTATTATTCATTTGCAA
*
80298607 ATTTTAGCATGTATTATTCATTTGCAA
1 ATTTTAACATGTATTATTCATTTGCAA
80298634 ATTTT
1 ATTTT
80298639 TCATATGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.19
25 10 0.37
26 4 0.15
27 8 0.30
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (27 bp):
ATTTTAACATGTATTATTCATTTGCAA
Found at i:80302838 original size:10 final size:10
Alignment explanation
Indices: 80302823--80302861 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
80302813 CATAAAAGAG
80302823 AAAATATAAT
1 AAAATATAAT
80302833 AAAATATAAT
1 AAAATATAAT
*
80302843 AAAATAGAAT
1 AAAATATAAT
80302853 GAAAATATA
1 -AAAATATA
80302862 CAAAAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 19 0.73
11 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (10 bp):
AAAATATAAT
Found at i:80302866 original size:20 final size:20
Alignment explanation
Indices: 80302823--80302866 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
80302813 CATAAAAGAG
* *
80302823 AAAATATAATAAAATATAAT
1 AAAATAGAATAAAATATAAC
80302843 AAAATAGAATGAAAATAT-AC
1 AAAATAGAAT-AAAATATAAC
80302863 AAAA
1 AAAA
80302867 GAAAATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAATAGAATAAAATATAAC
Found at i:80302872 original size:14 final size:14
Alignment explanation
Indices: 80302853--80302885 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80302843 AAAATAGAAT
80302853 GAAAATATACAA-AA
1 GAAAATA-ACAACAA
80302867 GAAAATAACAACAA
1 GAAAATAACAACAA
80302881 GAAAA
1 GAAAA
80302886 ATTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.73, C:0.09, G:0.09, T:0.09
Consensus pattern (14 bp):
GAAAATAACAACAA
Found at i:80303340 original size:17 final size:16
Alignment explanation
Indices: 80303318--80303368 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
80303308 CATGGTGGCA
80303318 AGTGGGGTAATGGAGTT
1 AGTGGGGT-ATGGAGTT
*
80303335 AGTGGGG--TGG-TTT
1 AGTGGGGTATGGAGTT
80303348 AGTGGGGTGATGGAGTT
1 AGTGGGGT-ATGGAGTT
80303365 AGTG
1 AGTG
80303369 ACAAGTAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 9 0.32
14 3 0.11
16 3 0.11
17 13 0.46
ACGTcount: A:0.18, C:0.00, G:0.51, T:0.31
Consensus pattern (16 bp):
AGTGGGGTATGGAGTT
Found at i:80307988 original size:12 final size:12
Alignment explanation
Indices: 80307971--80307996 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80307961 AAAATAGGGC
80307971 TTTAGCGGCGTT
1 TTTAGCGGCGTT
80307983 TTTAGCGGCGTT
1 TTTAGCGGCGTT
80307995 TT
1 TT
80307997 ATGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:80308201 original size:122 final size:123
Alignment explanation
Indices: 80308033--80308261 Score: 406
Period size: 122 Copynumber: 1.9 Consensus size: 123
80308023 ATTAGCGGCG
80308033 TTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGACAAAGCGTCGCT-AAAA
1 TTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGACAAAGCGTCGCTAAAAA
* *
80308097 ACAGAGCAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGTGGCA
66 ACAAAACAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGTGGCA
* *
80308155 TTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAATAGCGGCGTTTTTGTCAAAGCGTCGCTAAAAA
1 TTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGACAAAGCGTCGCTAAAAA
*
80308220 ATAAAACAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAA
66 ACAAAACAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAA
80308262 TAGATAACCC
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
122 58 0.57
123 43 0.43
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.21
Consensus pattern (123 bp):
TTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGACAAAGCGTCGCTAAAAA
ACAAAACAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAATAGTGGCA
Found at i:80308263 original size:41 final size:41
Alignment explanation
Indices: 80308025--80308261 Score: 377
Period size: 41 Copynumber: 5.8 Consensus size: 41
80308015 AATTATACAT
80308025 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
* *
80308066 TAGCGGCGTTTTTGACAAAGCGTCGCT-AAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
80308106 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
* * *
80308147 TAGTGGCATTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
* * * * *
80308188 TAGCGGCGTTTTTGTCAAAGCGTCGCTAAAAAATAAAACAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
80308229 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAA
80308262 TAGATAACCC
Statistics
Matches: 178, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 38 0.21
41 140 0.79
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
Found at i:80308333 original size:8 final size:8
Alignment explanation
Indices: 80308316--80308352 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
80308306 TAGTCTATAT
80308316 AACCCCTA
1 AACCCCTA
*
80308324 AACCCGTA
1 AACCCCTA
80308332 AACCCCTA
1 AACCCCTA
*
80308340 AACCACTA
1 AACCCCTA
80308348 AACCC
1 AACCC
80308353 AAAAAAACCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.41, C:0.46, G:0.03, T:0.11
Consensus pattern (8 bp):
AACCCCTA
Found at i:80309929 original size:7 final size:7
Alignment explanation
Indices: 80309917--80309948 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
80309907 AATCTTTAAA
80309917 AAAATTG
1 AAAATTG
80309924 AAAATTG
1 AAAATTG
80309931 AAAATTG
1 AAAATTG
80309938 AAAATTG
1 AAAATTG
80309945 AAAA
1 AAAA
80309949 ATAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (7 bp):
AAAATTG
Found at i:80310042 original size:16 final size:18
Alignment explanation
Indices: 80310023--80310057 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
80310013 ATCAATATTT
80310023 AAAATTT-AAAAAA-ATA
1 AAAATTTCAAAAAACATA
80310039 AAAATTTCAAAAAACATA
1 AAAATTTCAAAAAACATA
80310057 A
1 A
80310058 TCTCAGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 6 0.35
18 4 0.24
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATTTCAAAAAACATA
Found at i:80315213 original size:18 final size:18
Alignment explanation
Indices: 80315192--80315227 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80315182 TTTTTCATGA
*
80315192 TTTTTATAATATTTTATT
1 TTTTTATAAAATTTTATT
*
80315210 TTTTTTTAAAATTTTATT
1 TTTTTATAAAATTTTATT
80315228 ACCTTTAACG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTATAAAATTTTATT
Found at i:80317725 original size:24 final size:26
Alignment explanation
Indices: 80317673--80317732 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 26
80317663 CAGTTCGTAT
80317673 GAGCTTACTGATATATCAGCTCATAA
1 GAGCTTACTGATATATCAGCTCATAA
* * *
80317699 GAGCTTACT-AT-TTTCAGCTCTTCA
1 GAGCTTACTGATATATCAGCTCATAA
80317723 GAGCTTACTG
1 GAGCTTACTG
80317733 TTTCTAGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.63
25 2 0.07
26 9 0.30
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (26 bp):
GAGCTTACTGATATATCAGCTCATAA
Found at i:80327325 original size:20 final size:19
Alignment explanation
Indices: 80327300--80327337 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
80327290 TTTTAGTTTA
*
80327300 TTTTAAAAACTATTCAATTT
1 TTTTAAAAAATATT-AATTT
80327320 TTTTAAAAAATATTAATT
1 TTTTAAAAAATATTAATT
80327338 GTATAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTTAAAAAATATTAATTT
Found at i:80327422 original size:27 final size:27
Alignment explanation
Indices: 80327370--80327451 Score: 78
Period size: 27 Copynumber: 2.9 Consensus size: 27
80327360 AACATTCATT
*
80327370 ATATTATATTATTATTATTTGT-TTATAA
1 ATATAATATTATTA-TATTT-TATTATAA
* *
80327398 AT-TACATATTATCATATTTTATTATAT
1 ATATA-ATATTATTATATTTTATTATAA
80327425 ATATAATATTATTATATTATTTATTAT
1 ATATAATATTATTATA-T-TTTATTAT
80327452 GTATTATTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
26 1 0.02
27 23 0.51
28 13 0.29
29 8 0.18
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (27 bp):
ATATAATATTATTATATTTTATTATAA
Found at i:80327571 original size:17 final size:17
Alignment explanation
Indices: 80327546--80327582 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
80327536 TTCATATTTC
*
80327546 ATTATATTTTATTACAT
1 ATTACATTTTATTACAT
*
80327563 ATTACATTTTATTATAT
1 ATTACATTTTATTACAT
80327580 ATT
1 ATT
80327583 TTTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTACATTTTATTACAT
Found at i:80327582 original size:39 final size:38
Alignment explanation
Indices: 80327547--80327623 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
80327537 TCATATTTCA
* *
80327547 TTATATTTTATTA-CATAT-TACATTTTATTATATATTT
1 TTATATTAT-TTATCATATGTACATATTATTATATATTT
*
80327584 TTATATTATTTATCATATGGTATATATTATTATATATTT
1 TTATATTATTTATCATAT-GTACATATTATTATATATTT
80327623 T
1 T
80327624 GGTTATAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 3 0.09
37 13 0.38
39 18 0.53
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (38 bp):
TTATATTATTTATCATATGTACATATTATTATATATTT
Found at i:80333954 original size:4 final size:4
Alignment explanation
Indices: 80333945--80334025 Score: 72
Period size: 4 Copynumber: 19.8 Consensus size: 4
80333935 AGTAAGTTAA
* *** * *
80333945 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG AGTT ACAG AGAG CAAACG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G
**
80333995 TGAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
80334026 TAGAAAAGGG
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
4 57 0.93
5 3 0.05
6 1 0.02
ACGTcount: A:0.65, C:0.04, G:0.26, T:0.05
Consensus pattern (4 bp):
AAAG
Found at i:80341206 original size:8 final size:8
Alignment explanation
Indices: 80341188--80341227 Score: 62
Period size: 8 Copynumber: 4.8 Consensus size: 8
80341178 TTATTTCAAA
80341188 AAAAAAGAG
1 AAAAAA-AG
80341197 AAAAAAAG
1 AAAAAAAG
80341205 AAAAAAAG
1 AAAAAAAG
80341213 AAAAAAAAG
1 -AAAAAAAG
80341222 AAAAAA
1 AAAAAA
80341228 TAGAGAGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 16 0.53
9 14 0.47
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:80341210 original size:18 final size:18
Alignment explanation
Indices: 80341187--80341233 Score: 78
Period size: 17 Copynumber: 2.6 Consensus size: 18
80341177 TTTATTTCAA
80341187 AAAAAAAGAGAAAAAAAG
1 AAAAAAAGAGAAAAAAAG
80341205 AAAAAAAGA-AAAAAAAG
1 AAAAAAAGAGAAAAAAAG
80341222 AAAAAATAGAGA
1 AAAAAA-AGAGA
80341234 GGCCAAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.52
18 12 0.44
19 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (18 bp):
AAAAAAAGAGAAAAAAAG
Found at i:80342294 original size:87 final size:87
Alignment explanation
Indices: 80342187--80342399 Score: 345
Period size: 87 Copynumber: 2.4 Consensus size: 87
80342177 AAAGACAACA
* *
80342187 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGGTTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
80342252 TACGTTGAAGCAAATCTAAGAT
66 TACGTTAAAGCAAATCTAAGAT
* *
80342274 GATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
80342339 TACGTTAAAGCAAATCTAAGAT
66 TACGTTAAAGCAAATCTAAGAT
* * * *
80342361 GATTTAGTGTCTCTGTATTGGCAGAGAGCAAATCGAAGA
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGA
80342400 TAACAGATTT
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 116 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (87 bp):
GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTAAAGCAAATCTAAGAT
Found at i:80342421 original size:44 final size:44
Alignment explanation
Indices: 80342370--80342968 Score: 394
Period size: 44 Copynumber: 13.7 Consensus size: 44
80342360 TGATTTAGTG
*
80342370 TCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* * * *
80342414 TCTCTGTATTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTT
1 TCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGGC-A
* * * * * * *
80342461 TCACGTGT-TT-AC-GTTAAAGCAAATCTAAGAT----GATTTCGCG
1 TCTC-TGTATTGGCAG--AGAGCAGATCGAAGATAACAGATTTGGCA
* ** * *
80342501 TTTCTGTATTGGTGGAGAGCAGATCAAAGATACCAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* * *
80342545 TCTCTGTATTGGTAGAGAGAAGATCAAAGATAACAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
** *
80342589 TCTCTGTATTGGCAGAGAGCAGATCGAAGACATGGCTGATTTGGC-
1 TCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGGCA
* * ** * * *
80342634 TTTCAAGTGTTTTCGTTA-A-AGCAAATCTAAGAT----GATTTGGCG
1 TCTC---TGTATT-GGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* ** * *
80342676 TTTCTGTATTGGTGGTGAGCAGATCGAAGATACCAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* *
80342720 TCTCTGTATTGGCAGAAAGCAGATCGAAGATAACAGATTTGGTA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* * *** *
80342764 TCTCTGTATTGGTAGAGAGTAGATCGAAGACATAGTTGATTTGGCTT
1 TCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGGC-A
* * * * * *
80342811 TCACGTGT-TT-AC-GTTAAAGCAAATCTAAGAT----GATTTGGCG
1 TCTC-TGTATTGGCAG--AGAGCAGATCGAAGATAACAGATTTGGCA
* * *
80342851 TCTCTGTATTGGCGGAGAGCAGATCGAAGATACCAAATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* *
80342895 TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTAGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
*
80342939 TCTCTGTATTGGCAGAGAGTAGATCGAAGA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGA
80342969 CATAGCTGAT
Statistics
Matches: 436, Mismatches: 80, Indels: 78
0.73 0.13 0.13
Matches are distributed among these distances:
38 2 0.00
39 11 0.03
40 47 0.11
41 24 0.06
42 6 0.01
44 245 0.56
45 11 0.03
46 35 0.08
47 41 0.09
48 12 0.03
49 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
Found at i:80342434 original size:131 final size:131
Alignment explanation
Indices: 80342274--80342574 Score: 458
Period size: 131 Copynumber: 2.3 Consensus size: 131
80342264 AATCTAAGAT
* * * *
80342274 GATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* *
80342339 TACGTTAAAGCAAATCTAAGATGATTTAGTGTCTCTGTATTGGCAGAGAGCAAATCGAAGATAAC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAAC
80342404 A
131 A
*
80342405 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* * ** * *
80342470 TACGTTAAAGCAAATCTAAGATGATTTCGCGTTTCTGTATTGGTGGAGAGCAGATCAAAGATACC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAAC
80342535 A
131 A
* * *
80342536 GATTTGGCATCTCTGTATTGGTAGAGAGAAGATCAAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
80342575 TAACAGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 153 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (131 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAAC
A
Found at i:80342661 original size:175 final size:175
Alignment explanation
Indices: 80342370--80343101 Score: 1110
Period size: 175 Copynumber: 4.2 Consensus size: 175
80342360 TGATTTAGTG
* *
80342370 TCTCTGTATTGGCAGAGAGCAA-ATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAGAGC
1 TCTCTGTATTGGCAGAGAG-AAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGC
*
80342434 AGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTCG
65 AGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGG
* *
80342499 CGTTTCTGTATTGGTGGAGAGCAGATCAAAGATACCAGATTTGGCA
130 CGTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
*
80342545 TCTCTGTATTGGTAGAGAGAAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
1 TCTCTGTATTGGCAGAGAGAAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
* * *
80342610 GATCGAAGACATGGCTGATTTGGCTTTCAAGTGTTTTCGTTAAAGCAAATCTAAGATGATTTGGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* * * *
80342675 GTTTCTGTATTGGTGGTGAGCAGATCGAAGATACCAGATTTGGCA
131 GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
* * * * * *
80342720 TCTCTGTATTGGCAGAAAGCAGATCGAAGATAACAGATTTGGTATCTCTGTATTGGTAGAGAGTA
1 TCTCTGTATTGGCAGAGAGAAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
*
80342785 GATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* *
80342850 GTCTCTGTATTGGCGGAGAGCAGATCGAAGATACCAAATTTGGCA
131 GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
* * *
80342895 TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTAGCATCTCTGTATTGGCAGAGAGTA
1 TCTCTGTATTGGCAGAGAGAAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
* * * *
80342960 GATCGAAGACATAGCTGATTTGGCTTTTACGTGTTTACATTGAAGTAAATCTAAGATGATTTGGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* *
80343025 GTCTCTGTATTGGCGGAGAGCAGATCGAAA-ATAGCAGATTTGGCG
131 GTCTCTGTATTGGCGGAGAGCAGATC-AAAGATACCAGATTTGGCA
* * *
80343070 TCTCTGCT-TTGTCAGGGAGTAGATCAAAGATA
1 TCTCTG-TATTGGCAGAGAGAAGATCAAAGATA
80343102 TCAACATAGA
Statistics
Matches: 513, Mismatches: 41, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
174 2 0.00
175 508 0.99
176 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (175 bp):
TCTCTGTATTGGCAGAGAGAAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
Found at i:80342848 original size:306 final size:301
Alignment explanation
Indices: 80342274--80342924 Score: 733
Period size: 306 Copynumber: 2.1 Consensus size: 301
80342264 AATCTAAGAT
* * * * *
80342274 GATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGTT
*
80342339 TACGTTAAAGCAAATCTAAGATGATTTAGTGTCTCTGTATTGGCAGAGAGCAAATCGAAGATAAC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCAAATCGAAGATAAC
* * * *
80342404 AGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
131 AGATTTGGCATCTCTGTATTGACAGAAAGCAGATCGAAGA-ATAACAGATTTGGCTATCACGTGT
* * * * *
80342469 TTACGTTAAAGCAAATCTAAGATGATTTCGCGTTTCTGTATTGGTGGAGAGCAGATCAAAGATAC
195 TTA-GGTAAAGCAAATCGAAGATGATTTCGCGTTTCTGTATTCGTGGAAAGCAAATCAAAGAT--
*
80342534 CAGATTTGGCATCTCTGTATTGGTAGAGAGAAGATCAAAGATAACA
257 -AGATTTGGCATCTCTGTATTGGCAGAGAGAAGATCAAAGATAACA
*
80342580 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATGGCTGATTTGGCTTTCAAGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGTT
* * * ** * * *
80342645 TTCGTTAAAGCAAATCTAAGATGATTTGGCGTTTCTGTATTGGTGGTGAGCAGATCGAAGATACC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCAAATCGAAGATAAC
* *
80342710 AGATTTGGCATCTCTGTATTGGCAGAAAGCAGATCGAAG-ATAACAGATTTGG-TATCTC-TGTA
131 AGATTTGGCATCTCTGTATTGACAGAAAGCAGATCGAAGAATAACAGATTTGGCTATCACGTGT-
* * * *
80342772 TT-GGTAGAGAGTAGATCGAAGACATAGTTGATTTGGC-TTTCACGTGT-TTACGT-TAAAGCAA
195 TTAGGTA-A-AGCAAATCGAAG----A--TGATTTCGCGTTT--C-TGTATT-CGTGGAAAGCAA
* * * * * *
80342833 ATCTAAGAT-GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATACCA
248 ATCAAAGATAGATTTGGCATCTCTGTATTGGCAGAGAGAAGATCAAAGATAACA
* *
80342886 AATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
80342925 TAACAGATTT
Statistics
Matches: 293, Mismatches: 39, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
301 3 0.01
302 4 0.01
303 15 0.05
304 11 0.04
306 227 0.77
307 1 0.00
308 3 0.01
309 8 0.03
310 16 0.05
311 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (301 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGTT
TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCAAATCGAAGATAAC
AGATTTGGCATCTCTGTATTGACAGAAAGCAGATCGAAGAATAACAGATTTGGCTATCACGTGTT
TAGGTAAAGCAAATCGAAGATGATTTCGCGTTTCTGTATTCGTGGAAAGCAAATCAAAGATAGAT
TTGGCATCTCTGTATTGGCAGAGAGAAGATCAAAGATAACA
Found at i:80344823 original size:5 final size:5
Alignment explanation
Indices: 80344813--80344898 Score: 52
Period size: 5 Copynumber: 16.6 Consensus size: 5
80344803 TGTAACATTC
* *
80344813 ATTAT ATTAT ATTAT ATTAT TTTATT ATTAT -TTAT -TTAT AAATTAC
1 ATTAT ATTAT ATTAT ATTAT ATTA-T ATTAT ATTAT ATTAT --ATTAT
* * *
80344859 ATGT-T ATCAT ATTTT ATTAT ATATAT AATATT ATTAT ATT
1 AT-TAT ATTAT ATTAT ATTAT AT-TAT ATTA-T ATTAT ATT
80344899 TTTTATTATG
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
4 8 0.13
5 39 0.62
6 13 0.21
7 3 0.05
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:80344879 original size:27 final size:27
Alignment explanation
Indices: 80344843--80344904 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
80344833 TTTATTATTA
*
80344843 TTTATTTATAAAT-TACATGTTATCATAT
1 TTTA-TTATAAATATA-ATATTATCATAT
* *
80344871 TTTATTATATATATAATATTATTATAT
1 TTTATTATAAATATAATATTATCATAT
80344898 TTT-TTAT
1 TTTATTAT
80344905 TATGTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.13
27 20 0.67
28 6 0.20
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTATTATAAATATAATATTATCATAT
Found at i:80345027 original size:17 final size:17
Alignment explanation
Indices: 80345002--80345038 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
80344992 TTCATATTTC
*
80345002 ATTATATTTTATTACAT
1 ATTACATTTTATTACAT
*
80345019 ATTACATTTTATTATAT
1 ATTACATTTTATTACAT
80345036 ATT
1 ATT
80345039 TTTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTACATTTTATTACAT
Found at i:80345038 original size:39 final size:38
Alignment explanation
Indices: 80345003--80345079 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
80344993 TCATATTTCA
* *
80345003 TTATATTTTATTA-CATAT-TACATTTTATTATATATTT
1 TTATATTAT-TTATCATATGTACATATTATTATATATTT
*
80345040 TTATATTATTTATCATATGGTATATATTATTATATATTT
1 TTATATTATTTATCATAT-GTACATATTATTATATATTT
80345079 T
1 T
80345080 GGTTATAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 3 0.09
37 13 0.38
39 18 0.53
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (38 bp):
TTATATTATTTATCATATGTACATATTATTATATATTT
Found at i:80348176 original size:3 final size:3
Alignment explanation
Indices: 80348155--80348224 Score: 68
Period size: 3 Copynumber: 23.3 Consensus size: 3
80348145 CTCTTCTGGG
* * * * * * *
80348155 TCA TCT TCA TCA ACA TCA TCA TCA TCA TCA CCA CCA CCA CCA TCA TCC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
*
80348203 TCA TCG TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA T
80348225 TGACTTGGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.30, C:0.40, G:0.01, T:0.29
Consensus pattern (3 bp):
TCA
Found at i:80351504 original size:30 final size:30
Alignment explanation
Indices: 80351458--80351581 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
80351448 TTTTATTATG
*
80351458 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
80351489 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
80351519 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
80351549 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
80351579 CCA
1 CCA
80351582 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:80351513 original size:15 final size:15
Alignment explanation
Indices: 80351468--80351575 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
80351458 CCAATATCTC
80351468 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
80351483 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
80351498 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
80351513 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
80351528 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
80351543 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
80351558 GATACCCATATCTTT
1 GATACCCATATCTTT
80351573 GAT
1 GAT
80351576 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:80356198 original size:30 final size:30
Alignment explanation
Indices: 80356152--80356245 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
80356142 TTTTATTATG
*
80356152 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
80356183 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
80356213 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
80356243 CCA
1 CCA
80356246 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:80356207 original size:15 final size:15
Alignment explanation
Indices: 80356162--80356239 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
80356152 CCAATATCTC
80356162 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
80356177 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
80356192 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
80356207 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
80356222 GATACCCATATCTTT
1 GATACCCATATCTTT
80356237 GAT
1 GAT
80356240 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:80361165 original size:11 final size:11
Alignment explanation
Indices: 80361149--80361173 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80361139 CCTTCTATTT
80361149 ATTATCTTAAA
1 ATTATCTTAAA
80361160 ATTATCTTAAA
1 ATTATCTTAAA
80361171 ATT
1 ATT
80361174 TTTAAAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTATCTTAAA
Found at i:80362076 original size:26 final size:26
Alignment explanation
Indices: 80362047--80362128 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
80362037 TGGTACAAAT
80362047 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80362073 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80362099 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80362125 TGAT
1 TGAT
80362129 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80366074 original size:13 final size:13
Alignment explanation
Indices: 80366056--80366080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80366046 TTTAGTAGTT
80366056 TTTAGGATAAAGG
1 TTTAGGATAAAGG
80366069 TTTAGGATAAAG
1 TTTAGGATAAAG
80366081 ATTATTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (13 bp):
TTTAGGATAAAGG
Found at i:80370334 original size:40 final size:41
Alignment explanation
Indices: 80370175--80370320 Score: 185
Period size: 40 Copynumber: 3.6 Consensus size: 41
80370165 TTGAATGATG
* * *
80370175 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
80370215 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80370255 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80370296 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80370321 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80374513 original size:17 final size:18
Alignment explanation
Indices: 80374491--80374529 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
80374481 TTTATATGAT
*
80374491 ATTAAAAT-TATTAAAAA
1 ATTAAAATATATAAAAAA
80374508 ATTAAAATATATAAAAAA
1 ATTAAAATATATAAAAAA
80374526 ATTA
1 ATTA
80374530 GGGAAACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAAAATATATAAAAAA
Found at i:80374874 original size:35 final size:37
Alignment explanation
Indices: 80374811--80374889 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
80374801 GTTACAAAAT
80374811 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
80374847 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
80374882 CATATCAT
1 CATATCAT
80374890 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:80374887 original size:14 final size:15
Alignment explanation
Indices: 80374832--80374887 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
80374822 AGATTGCATA
80374832 TCATATCTAAGATTG
1 TCATATCTAAGATTG
80374847 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
80374865 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
80374882 -CATATC
1 TCATATC
80374888 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:80374897 original size:17 final size:19
Alignment explanation
Indices: 80374818--80374889 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
80374808 AATCATATCT
80374818 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
80374837 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
80374855 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
80374872 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
80374890 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:80379668 original size:23 final size:23
Alignment explanation
Indices: 80379638--80379682 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
80379628 TAGTGTCCGT
80379638 AAGTATTCTATGTAACAAGGGGA
1 AAGTATTCTATGTAACAAGGGGA
*
80379661 AAGTATTCTGTGTAACAAGGGG
1 AAGTATTCTATGTAACAAGGGG
80379683 TTCAAGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.29, T:0.27
Consensus pattern (23 bp):
AAGTATTCTATGTAACAAGGGGA
Found at i:80387864 original size:2 final size:2
Alignment explanation
Indices: 80387857--80387911 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
80387847 AACCTGGTAA
80387857 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
80387899 AG AG AG AG AG AG A
1 AG AG AG AG AG AG A
80387912 TGTCAACTAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:80390568 original size:17 final size:18
Alignment explanation
Indices: 80390541--80390574 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80390531 AAAATGTGTT
80390541 CTTTTTATTTTCAATTTG
1 CTTTTTATTTTCAATTTG
*
80390559 CTTTTT-TTTTCTATTT
1 CTTTTTATTTTCAATTT
80390575 TTATTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.74
Consensus pattern (18 bp):
CTTTTTATTTTCAATTTG
Found at i:80392341 original size:24 final size:24
Alignment explanation
Indices: 80392314--80392362 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
80392304 GTATATACAT
80392314 AAGTAAATATAATCATCTTTAGTA
1 AAGTAAATATAATCATCTTTAGTA
*
80392338 AAGTAAATATAATCATTTTTAGTA
1 AAGTAAATATAATCATCTTTAGTA
80392362 A
1 A
80392363 TACCTATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (24 bp):
AAGTAAATATAATCATCTTTAGTA
Found at i:80395155 original size:2 final size:2
Alignment explanation
Indices: 80395150--80395176 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80395140 CATCTTTAGG
80395150 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
80395177 GATGGTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80395376 original size:67 final size:67
Alignment explanation
Indices: 80395268--80395404 Score: 256
Period size: 67 Copynumber: 2.0 Consensus size: 67
80395258 TAAATTGCAT
80395268 GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATAGGTATGT
1 GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATAGGTATGT
80395333 GG
66 GG
* *
80395335 GTTATTTATATGAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATGGGTATGT
1 GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATAGGTATGT
80395400 GG
66 GG
80395402 GTT
1 GTT
80395405 TGATGGCTAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (67 bp):
GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATAGGTATGT
GG
Found at i:80398809 original size:24 final size:24
Alignment explanation
Indices: 80398764--80398811 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
80398754 ATTTAATCTT
* *
80398764 TTTATTTAATCTTTCCCTTTTTTA
1 TTTATTTAATCTTTCACATTTTTA
80398788 TTTATTTAAT-TTTCAACATTTTTA
1 TTTATTTAATCTTTC-ACATTTTTA
80398812 ATTCCTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTATTTAATCTTTCACATTTTTA
Found at i:80398906 original size:10 final size:10
Alignment explanation
Indices: 80398893--80398917 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80398883 TTTTAAATCA
80398893 TTTTTTTTAT
1 TTTTTTTTAT
80398903 TTTTTTTTAT
1 TTTTTTTTAT
80398913 TTTTT
1 TTTTT
80398918 AATGCTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:80410299 original size:33 final size:33
Alignment explanation
Indices: 80410260--80410404 Score: 125
Period size: 33 Copynumber: 4.5 Consensus size: 33
80410250 AAGGGTGGTA
* *
80410260 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
1 TTGAAAAGGAAATGTACACTTTGTGTATACCAC
* * *
80410293 TTGAAAAGGAAAAGTACA-TTATATGTGTA-CAC
1 TTGAAAAGGAAATGTACACTT-TGTGTATACCAC
** * * *
80410325 TTGAAAAGGTTATGTACACTTTGTGTGTACAAA
1 TTGAAAAGGAAATGTACACTTTGTGTATACCAC
** *
80410358 TTGAAAAGGGTATGTACACTTCGTGTA-ACCAC
1 TTGAAAAGGAAATGTACACTTTGTGTATACCAC
* *
80410390 TTGAAAGGGGAATGT
1 TTGAAAAGGAAATGT
80410405 GCACCTCGGG
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
32 43 0.47
33 49 0.53
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (33 bp):
TTGAAAAGGAAATGTACACTTTGTGTATACCAC
Found at i:80412010 original size:50 final size:50
Alignment explanation
Indices: 80411952--80412109 Score: 145
Period size: 50 Copynumber: 3.3 Consensus size: 50
80411942 CCTATACCCT
80411952 TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCC
1 TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCC
* * * *
80412002 TAAAGTTGCGGTGGAG-CAGATTGAAGCTA-C--A---AATCCTATAC-CCC
1 TAAAGTTGCAGTGG-GTCGGATTGAATCTACCATAGTGAATCTTAT-CTCCC
* * * *
80412046 TGAAGTTGCAGTGGGTCGGATGGAAGT-TACCATAGTGGATCTTATCTTCC
1 TAAAGTTGCAGTGGGTCGGATTGAA-TCTACCATAGTGAATCTTATCTCCC
*
80412096 TGAAGTTGCAGTGG
1 TAAAGTTGCAGTGG
80412110 AGTAGGATGA
Statistics
Matches: 85, Mismatches: 12, Indels: 22
0.71 0.10 0.18
Matches are distributed among these distances:
43 1 0.01
44 31 0.36
45 2 0.02
47 2 0.02
49 2 0.02
50 46 0.54
51 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCC
Found at i:80412102 original size:94 final size:94
Alignment explanation
Indices: 80411938--80412155 Score: 323
Period size: 94 Copynumber: 2.3 Consensus size: 94
80411928 GTGAAACCAT
* * *
80411938 AAATCCTATACCCTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAATCTACCATAGTGAATCTTATCTCCCT
*
80412003 AAAGTTGCGGTGGAGCA-GATTGAAGCTAC
66 AAAGTTGCAGTGGAGCAGGA-TGAAGCTAC
* *
80412032 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGT-TACCATAGTGGATCTTATCTTCC
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAA-TCTACCATAGTGAATCTTATCTCCC
* *
80412096 TGAAGTTGCAGTGGAGTAGGATGAAGCTAC
65 TAAAGTTGCAGTGGAGCAGGATGAAGCTAC
*
80412126 AATTCCTATACCCCTGAAGTTGCAGTGGGT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGT
80412156 TGGAATGAAG
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 110 0.97
95 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (94 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAATCTACCATAGTGAATCTTATCTCCCT
AAAGTTGCAGTGGAGCAGGATGAAGCTAC
Found at i:80412164 original size:44 final size:43
Alignment explanation
Indices: 80412023--80412171 Score: 147
Period size: 44 Copynumber: 3.3 Consensus size: 43
80412013 TGGAGCAGAT
* *
80412023 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGA
1 TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTAGGA
* * *
80412066 TGGAAGTTACCATAGTGGATCTTAT-CTTCCTGAAGTTGCAGTGGAGTAGGA
1 T-GAAGCTA-CA-A-T---TCCTATAC-CCCTGAAGTTGCAGTGG-GTAGGA
*
80412117 TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTTGGAA
1 TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTAGG-A
80412161 TGAAGCTACAA
1 TGAAGCTACAA
80412172 CTATAAATCC
Statistics
Matches: 86, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
43 5 0.06
44 39 0.45
45 3 0.03
46 1 0.01
47 1 0.01
48 1 0.01
49 3 0.03
50 27 0.31
51 6 0.07
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTAGGA
Found at i:80412194 original size:94 final size:93
Alignment explanation
Indices: 80411938--80412197 Score: 258
Period size: 94 Copynumber: 2.8 Consensus size: 93
80411928 GTGAAACCAT
* * * * * * **
80411938 AAATCCTATACCCTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGCTACAATAGTAAATCCCATCT-CCT
* *
80412003 AAAGTTGCGGTGGAGCAGATTGAAGCTAC
65 GAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * ** **
80412032 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGTTACCATAGTGGATCTTATCTTCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGCTACAATAGTAAATCCCATC-TCCT
*
80412097 GAAGTTGCAGTGGAGTAGGA-TGAAGCTAC
65 GAAGTTGCAGTGGAGCA-GATTGAAGCTAC
* *
80412126 AATTCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-GAAGCTACAACTA-TAAATCCCATAC-C
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGG-ATGGAAGCTACAA-TAGTAAATCCCAT-CTC
80412188 CTTGAAGTTG
63 C-TGAAGTTG
80412198 TAATGGGTCA
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.01
94 133 0.93
95 8 0.06
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (93 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGCTACAATAGTAAATCCCATCTCCTG
AAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:80412359 original size:238 final size:238
Alignment explanation
Indices: 80411936--80412390 Score: 597
Period size: 238 Copynumber: 1.9 Consensus size: 238
80411926 CAGTGAAACC
* * * * * *
80411936 ATAAATCCTATACCCTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCC
1 ATAAATCCCATACCCTTAAAGTTGCAATGGGTCAGATTAAATATACCATAGCGAATCTTATCTCC
* * * * * * *
80412001 CTAAAGTTGCGGTGGAGCAGATTGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGA
66 CTAAAGTTACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGATCAGA
* * * * *
80412066 TGGAAGTTACCATAGTGGATCTTATCTTCCTGAAGTTGCAGTGGAGTAGGATGAAGCTACAATTC
131 TGGAAGTTACCATAGTGAATCTTATCTTCCTGAAGTTGCAATGAAGTAAGATGAAGCTACAACTC
80412131 CTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAACT
196 CTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAACT
* * *
80412174 ATAAATCCCATACCCTTGAAGTTGTAATGGGTCAGATTAAATATGCCATAGCGAATCTTATCTCC
1 ATAAATCCCATACCCTTAAAGTTGCAATGGGTCAGATTAAATATACCATAGCGAATCTTATCTCC
* * ** *
80412239 CTAAAGTTACAGTGGAGTAAAATGAAGCTACAACTTTTATATCCCTGAAGTTGCAGTAGATCAGA
66 CTAAAGTTACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGATCAGA
* * *** *
80412304 TTGAATTTATTGTAGTGAATCTTATC-TCTCTGAAGTTGCAATGAAGTAAGATGAAGCTATAACT
131 TGGAAGTTACCATAGTGAATCTTATCTTC-CTGAAGTTGCAATGAAGTAAGATGAAGCTACAACT
*
80412368 CCTATATCCCTGAAGTTGCAGTG
195 CCTATACCCCTGAAGTTGCAGTG
80412391 AAGTAAGATG
Statistics
Matches: 183, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
237 2 0.01
238 181 0.99
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (238 bp):
ATAAATCCCATACCCTTAAAGTTGCAATGGGTCAGATTAAATATACCATAGCGAATCTTATCTCC
CTAAAGTTACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGATCAGA
TGGAAGTTACCATAGTGAATCTTATCTTCCTGAAGTTGCAATGAAGTAAGATGAAGCTACAACTC
CTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAACT
Found at i:80412396 original size:44 final size:44
Alignment explanation
Indices: 80412333--80412434 Score: 177
Period size: 44 Copynumber: 2.3 Consensus size: 44
80412323 TCTTATCTCT
*
80412333 CTGAAGTTGCAATGAAGTAAGATGAAGCTATAACTCCTATATCC
1 CTGAAGTTGCAATGAAGTAAGATGAAGCTATAACTCCTATAGCC
*
80412377 CTGAAGTTGCAGTGAAGTAAGATGAAGCTATAACTCCTATAGCC
1 CTGAAGTTGCAATGAAGTAAGATGAAGCTATAACTCCTATAGCC
*
80412421 TTGAAGTTGCAATG
1 CTGAAGTTGCAATG
80412435 GATCTGATTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (44 bp):
CTGAAGTTGCAATGAAGTAAGATGAAGCTATAACTCCTATAGCC
Found at i:80415738 original size:24 final size:24
Alignment explanation
Indices: 80415706--80415881 Score: 208
Period size: 24 Copynumber: 7.0 Consensus size: 24
80415696 TGGCATTGTG
*
80415706 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
*
80415730 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
80415754 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
* **
80415781 GCTAAGTGAAATAAGACTGTGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
80415806 CTAAGTGAAATAAGTCCATGGAAATAT
1 CTAAGTGAAATAAGTCCATGG---CAT
*
80415833 GCTAAGTGAAATAAGTCCATGACAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
80415858 CTAAGTGAAATAAGTCTATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
80415882 GGTGCTAAGT
Statistics
Matches: 132, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
24 85 0.64
25 4 0.03
27 4 0.03
28 39 0.30
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:80415785 original size:76 final size:78
Alignment explanation
Indices: 80415695--80415881 Score: 251
Period size: 76 Copynumber: 2.4 Consensus size: 78
80415685 TATCTAGGAT
* *
80415695 ATGGCATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGACCATGG-CAT-CTAA
1 ATGGCAATGTGCTAAGTGAAATAAGACTATGGCATCTAAGTGAAATAAGACCATGGACATGCTAA
80415758 GTGAAATAAGTCC
66 GTGAAATAAGTCC
* * *
80415771 ATGGCAATGTGCTAAGTGAAATAAGACTGTGGCATCTAAGTGAAATAAGTCCATGGAAATATGCT
1 ATGGCAATGTGCTAAGTGAAATAAGACTATGGCATCTAAGTGAAATAAGACCATGG--ACATGCT
80415836 AAGTGAAATAAGTCC
64 AAGTGAAATAAGTCC
* *
80415851 ATGAC-A--T-CTAAGTGAAATAAGTCTATGGCAT
1 ATGGCAATGTGCTAAGTGAAATAAGACTATGGCAT
80415882 GGTGCTAAGT
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
76 74 0.75
77 1 0.01
79 3 0.03
80 21 0.21
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (78 bp):
ATGGCAATGTGCTAAGTGAAATAAGACTATGGCATCTAAGTGAAATAAGACCATGGACATGCTAA
GTGAAATAAGTCC
Found at i:80415790 original size:52 final size:51
Alignment explanation
Indices: 80415706--80415893 Score: 256
Period size: 52 Copynumber: 3.7 Consensus size: 51
80415696 TGGCATTGTG
*
80415706 CTAAGTGAAATAAGACCATGGCA--T-CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCATGTGCTAAGTGAAATAAGACCATGGCAT
**
80415754 CTAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGACTGTGGCAT
1 CTAAGTGAAATAAGTCCATGGC-ATGTGCTAAGTGAAATAAGACCATGGCAT
* * * *
80415806 CTAAGTGAAATAAGTCCATGGAAATATGCTAAGTGAAATAAGTCCATGACAT
1 CTAAGTGAAATAAGTCCATGG-CATGTGCTAAGTGAAATAAGACCATGGCAT
*
80415858 CTAAGTGAAATAAGTCTATGGCATGGTGCTAAGTGA
1 CTAAGTGAAATAAGTCCATGGCAT-GTGCTAAGTGA
80415894 GAAATTTCCC
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
48 21 0.17
49 1 0.01
51 3 0.02
52 97 0.80
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (51 bp):
CTAAGTGAAATAAGTCCATGGCATGTGCTAAGTGAAATAAGACCATGGCAT
Found at i:80415972 original size:51 final size:51
Alignment explanation
Indices: 80415917--80416114 Score: 292
Period size: 51 Copynumber: 3.9 Consensus size: 51
80415907 TGAACCTTAG
*
80415917 GAATAAAATAACTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* * *
80415968 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCTACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* *
80416019 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCAGTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* *
80416070 GAATAAAATAGCTATGGTTACA-AAG-GTGGTACTATGTAAAGGCCA
1 GAATAAAATAGCTTTGG--ACACAAGTGTGGTACTATGTGAAGGCCA
80416115 TCGTGTATCT
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
51 129 0.96
52 3 0.02
53 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
Found at i:80419266 original size:42 final size:42
Alignment explanation
Indices: 80419207--80419453 Score: 298
Period size: 42 Copynumber: 5.8 Consensus size: 42
80419197 AGGGTTACTA
* *
80419207 AGATTACGTGTGAGACCATATCTGGGGTATGGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
* * * *
80419249 AGATTTCGTGTAAGACCATATCTAGGATATGGCATCAATATA
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
* * *
80419291 AGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATACG
1 AGATTACGTGTAAGACCATA-TCTGGGATA-TGGCATCGATATG
* * *
80419334 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATA
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
* * * * *
80419376 AGATTTCGTGTAAAACCATAGCTGGGCTATTGGCATCGATACG
1 AGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATATG
*
80419419 AGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTGGGATATGGCAT
80419454 TGGTACGATA
Statistics
Matches: 171, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
42 102 0.60
43 69 0.40
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:80419337 original size:85 final size:85
Alignment explanation
Indices: 80419205--80419453 Score: 394
Period size: 85 Copynumber: 2.9 Consensus size: 85
80419195 TTAGGGTTAC
* * * * * *
80419205 TAAGATTACGTGTGAGACCATA-TCTGGGGTA-TGGCATCGATATGAGATTTCGTGTAAGACCAT
1 TAAGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATACGAGATTACATGTAAGACCAT
*
80419268 ATCTAGGATATGGCATCAATA
65 ATCTGGGATATGGCATCAATA
80419289 TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
1 TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
80419354 TCTGGGATATGGCATCAATA
66 TCTGGGATATGGCATCAATA
* *
80419374 TAAGATTTCGTGTAAAACCATAGCTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
1 TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
80419439 TCTGGGATATGGCAT
66 TCTGGGATATGGCAT
80419454 TGGTACGATA
Statistics
Matches: 154, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
84 26 0.17
85 128 0.83
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (85 bp):
TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
TCTGGGATATGGCATCAATA
Found at i:80419461 original size:127 final size:127
Alignment explanation
Indices: 80419207--80419453 Score: 327
Period size: 127 Copynumber: 1.9 Consensus size: 127
80419197 AGGGTTACTA
* * * * * * *
80419207 AGATTACGTGTGAGACCATATCTGGGGTATGGCATCGATATGAGATTTCGTGTAAGACCATATCT
1 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
* * * *
80419272 AGGATATGGCATCAATATAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACG
66 AGGATATGGCATCAATACAAGATTACATGTAAGACCATAGTTGGGATATTGGCATCGATACG
80419334 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
1 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
* * * *
80419399 GGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA-TCTGGGATA-TGGCAT
66 AGGATA-TGGCATCAATACAAGATTACATGTAAGACCATAGT-TGGGATATTGGCAT
80419454 TGGTACGATA
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
127 69 0.67
128 34 0.33
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (127 bp):
AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
AGGATATGGCATCAATACAAGATTACATGTAAGACCATAGTTGGGATATTGGCATCGATACG
Found at i:80422280 original size:19 final size:19
Alignment explanation
Indices: 80422252--80422288 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80422242 GGAATAATAT
*
80422252 ATATAGGAAAATATATAAC
1 ATATAAGAAAATATATAAC
*
80422271 ATATAAGAAAATTTATAA
1 ATATAAGAAAATATATAA
80422289 ATAAAATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (19 bp):
ATATAAGAAAATATATAAC
Found at i:80422308 original size:21 final size:21
Alignment explanation
Indices: 80422284--80422329 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
80422274 TAAGAAAATT
80422284 TATAAATAAAATG-TATAATAA
1 TATAAATAAAATGATA-AATAA
*
80422305 TATAAATAATATGATAAATAA
1 TATAAATAAAATGATAAATAA
80422326 TATA
1 TATA
80422330 TAAAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
TATAAATAAAATGATAAATAA
Found at i:80422313 original size:12 final size:11
Alignment explanation
Indices: 80422298--80422344 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
80422288 AATAAAATGT
80422298 ATAATAATATAA
1 ATAAT-ATATAA
80422310 ATAATATGATAA
1 ATAATAT-ATAA
80422322 ATAATATATAAAA
1 ATAATATAT--AA
80422335 ATAATATATA
1 ATAATATATA
80422345 TACAATTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.16
12 16 0.50
13 11 0.34
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
ATAATATATAA
Found at i:80423980 original size:44 final size:43
Alignment explanation
Indices: 80423922--80424062 Score: 183
Period size: 44 Copynumber: 3.2 Consensus size: 43
80423912 ATGGAGAAAT
* * *
80423922 CAAATCTGTCATCTTCGACCTGCCCACTGTCAATACAGAGACGC
1 CAAATCTGT-ATCTTCGATCTGCTCTCTGTCAATACAGAGACGC
* * * *
80423966 CAAATCTGCTATCTTCGATCTGCTCTTTATCAATATAGAGGCGC
1 CAAATCTG-TATCTTCGATCTGCTCTCTGTCAATACAGAGACGC
*
80424010 CAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAAAGACGC
1 CAAATCTG-TATCTTCGATCTGCTCTCTGTCAATACAGAGACGC
80424054 CAAATCTGT
1 CAAATCTGT
80424063 CACCTTTGAT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.01
44 81 0.98
45 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (43 bp):
CAAATCTGTATCTTCGATCTGCTCTCTGTCAATACAGAGACGC
Found at i:80424095 original size:23 final size:23
Alignment explanation
Indices: 80424052--80424095 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
80424042 ATACAAAGAC
*
80424052 GCCAAATCTGTCACCTTTGATTT
1 GCCAAATCTGTCACCTATGATTT
*
80424075 GCCAAATCTGTCAGCTATGAT
1 GCCAAATCTGTCACCTATGAT
80424096 CTGTTCTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (23 bp):
GCCAAATCTGTCACCTATGATTT
Found at i:80424123 original size:44 final size:44
Alignment explanation
Indices: 80424075--80424391 Score: 451
Period size: 44 Copynumber: 7.2 Consensus size: 44
80424065 CCTTTGATTT
* *
80424075 GCCAAATCTGTCAGCTAT-GATCTGTTCTCTGTCAATACAGAGAC
1 GCCAAATCTGTCATCT-TCGATCTGCTCTCTGTCAATACAGAGAC
* *
80424119 GCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
* * *
80424163 GTCAAATCTGTCATTTTTGATCTGCTCAT-TGTCAATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTC-TCTGTCAATACAGAGAC
* * *
80424207 ACCAAATCTGTCATCTTTGATATGCTCTCTGTCAATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
*
80424251 GCCAAATCTGTCATCTTCGATCTGCTCTCTATCAATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
* *
80424295 GCCAAATCTATCATCTTCGATCTGCTCTCTGTCAATACAGGGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
* *
80424339 GCCAAATCTGTTATCTTCGGTCTGCTCTCTGAT-AATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTG-TCAATACAGAGAC
80424383 GCCAAATCT
1 GCCAAATCT
80424392 ACTATCGGTG
Statistics
Matches: 247, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
43 2 0.01
44 243 0.98
45 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
Found at i:80424212 original size:155 final size:155
Alignment explanation
Indices: 80423948--80424227 Score: 411
Period size: 155 Copynumber: 1.8 Consensus size: 155
80423938 GACCTGCCCA
* * * * *
80423948 CTGTCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTTATCAATATAGAGGCGCCAA
1 CTGTCAATACAGAGACGCCAAATCTGCTATCTTAGATCTGCTCTCTATCAATACAAAGACGCCAA
* *
80424013 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAAAGACGCCAAATCTGTCACCTTTGATTTGCC
66 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGACACCAAATCTGTCACCTTTGATTTGCC
80424078 AAATCTGTCAGCTATGATCTGTTCT
131 AAATCTGTCAGCTATGATCTGTTCT
* *
80424103 CTGTCAATACAGAGACGCCAAATCTG-TCATCTTAGATCTGCTCTCTGTCAATACAAAGACGTCA
1 CTGTCAATACAGAGACGCCAAATCTGCT-ATCTTAGATCTGCTCTCTATCAATACAAAGACGCCA
* * * *
80424167 AATCTGTCATTTTTGATCTGCTCAT-TGTCAATACAGAGACACCAAATCTGTCATCTTTGAT
65 AATCTGTCATCTTCGATCTGCTC-TCTGTCAATACAAAGACACCAAATCTGTCACCTTTGAT
80424228 ATGCTCTCTG
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
154 1 0.01
155 108 0.98
156 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (155 bp):
CTGTCAATACAGAGACGCCAAATCTGCTATCTTAGATCTGCTCTCTATCAATACAAAGACGCCAA
ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGACACCAAATCTGTCACCTTTGATTTGCC
AAATCTGTCAGCTATGATCTGTTCT
Found at i:80424217 original size:111 final size:110
Alignment explanation
Indices: 80423995--80424219 Score: 240
Period size: 111 Copynumber: 2.0 Consensus size: 110
80423985 CTGCTCTTTA
* * * *
80423995 TCAATATAGAGGCGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
1 TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
* * * * *****
80424060 TGTCACCTTTGATTTGCCAAATCTGTCAGCTATGATCTGTTCTCTG
66 TGTCACCTTTGATCTGCC-AATCTGTCAGATAAGAACCCAAATCTG
*
80424106 TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGTCAAATC
1 TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
**
80424171 TGTCATTTTTGATCTGCTC-AT-TGTCA-ATACAGAGACACCAAATCTG
66 TGTCACCTTTGATCTGC-CAATCTGTCAGATA-AGA-AC-CCAAATCTG
80424217 TCA
1 TCA
80424220 TCTTTGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
108 2 0.02
109 7 0.07
110 3 0.03
111 81 0.86
112 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (110 bp):
TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
TGTCACCTTTGATCTGCCAATCTGTCAGATAAGAACCCAAATCTG
Found at i:80433528 original size:318 final size:318
Alignment explanation
Indices: 80432951--80433583 Score: 1140
Period size: 318 Copynumber: 2.0 Consensus size: 318
80432941 TAACTCGACC
* * * *
80432951 GCGGAGTTATGACTTCGGTGATGATAAAGATATCGTCCAAGCATAGTCACCTTAGTTTTTAATCC
1 GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
80433016 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
66 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
* *
80433081 CGGTTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTTCCCAATCCAGCT
131 CGGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
*
80433146 CTCTTCATTGATAGCTGTATCCTCTTATATTGCATCTTCAAGTCATCTCGGTCTTCCTCAATCTT
196 CTCTTCATTGATAGCTGTATCCTCTTATATTGCATCTTCAAGTCATCTCGGTCTTCATCAATCTT
*
80433211 CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTGTGAACGTCGACGTCTAAGACT
261 CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAACGTCGACGTCTAAGACT
80433269 GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
1 GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
*
80433334 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCTCTTGGAACTTCTTCTCCTAATACT
66 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
80433399 CGGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
131 CGGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
* * * *
80433464 CTCTTCATTGATAGTTGTATCCTCTTATATTGCGTCTTCAAGTCCTTTCGGTCTTCATCAATCTT
196 CTCTTCATTGATAGCTGTATCCTCTTATATTGCATCTTCAAGTCATCTCGGTCTTCATCAATCTT
*
80433529 CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAATGTCGACGTCTAAG
261 CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAACGTCGACGTCTAAG
80433584 CTTAGTTACA
Statistics
Matches: 301, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
318 301 1.00
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (318 bp):
GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
CGGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
CTCTTCATTGATAGCTGTATCCTCTTATATTGCATCTTCAAGTCATCTCGGTCTTCATCAATCTT
CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAACGTCGACGTCTAAGACT
Found at i:80436367 original size:24 final size:24
Alignment explanation
Indices: 80436269--80436373 Score: 78
Period size: 24 Copynumber: 4.4 Consensus size: 24
80436259 AACAATGATC
* *
80436269 ATAACAATATAGATTACATAATAC
1 ATAACAATATAAATTACATAATAT
* *
80436293 AT-AC-ATAATAATATTTCATGCAAAAT
1 ATAACAAT-ATAA-ATTACAT--AATAT
*
80436319 ATAAC-ATAGAAA--ACAATAA-AT
1 ATAACAATATAAATTAC-ATAATAT
80436340 ATAACAATATAAATTACATAATAT
1 ATAACAATATAAATTACATAATAT
80436364 ATAACAATAT
1 ATAACAATAT
80436374 TTTATGCAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
21 7 0.11
22 10 0.16
23 10 0.16
24 24 0.38
25 1 0.02
26 8 0.12
27 4 0.06
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (24 bp):
ATAACAATATAAATTACATAATAT
Found at i:80436938 original size:12 final size:11
Alignment explanation
Indices: 80436923--80436969 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
80436913 AATAAAATGT
80436923 ATAATAATATAA
1 ATAAT-ATATAA
80436935 ATAATATGATAA
1 ATAATAT-ATAA
80436947 ATAATATATAAAA
1 ATAATATAT--AA
80436960 ATAATATATA
1 ATAATATATA
80436970 TACAATTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.16
12 16 0.50
13 11 0.34
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
ATAATATATAA
Found at i:80443124 original size:21 final size:20
Alignment explanation
Indices: 80443082--80443121 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
80443072 TAATTTGAAT
*
80443082 GAATAAATTTACATTTAAAA
1 GAATAAATTTACATTAAAAA
80443102 GAATAGAATTTA-ATTAAAAA
1 GAATA-AATTTACATTAAAAA
80443122 AGATAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (20 bp):
GAATAAATTTACATTAAAAA
Found at i:80443183 original size:17 final size:18
Alignment explanation
Indices: 80443143--80443192 Score: 66
Period size: 17 Copynumber: 2.7 Consensus size: 18
80443133 TAAAAAAACT
80443143 AAATAAAGAAATATTTAAAG
1 AAATAAA-AAAT-TTTAAAG
80443163 AAATAAAAAATTTTAAA-
1 AAATAAAAAATTTTAAAG
*
80443180 AAATAAACAATTT
1 AAATAAAAAATTT
80443193 AATTTAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 12 0.41
18 6 0.21
19 4 0.14
20 7 0.24
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (18 bp):
AAATAAAAAATTTTAAAG
Done.